sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | librostlab-blast 1.0.1-13 (mips64el) Mon, 30 Jan 2023 00:20:42 +0000 | +==============================================================================+ Package: librostlab-blast Version: 1.0.1-13 Source Version: 1.0.1-13 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-e3ac2b4e-f1d7-4d92-b36f-ac070944d453' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-X8g3F4/resolver-dxCU27' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main mips64el Packages [9035 kB] Fetched 9035 kB in 1s (8916 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librostlab-blast.git Please use: git clone https://salsa.debian.org/med-team/librostlab-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 393 kB of source archives. Get:1 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-13 (dsc) [2522 B] Get:2 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-13 (tar) [384 kB] Get:3 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-13 (diff) [6540 B] Fetched 393 kB in 0s (7552 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/librostlab-blast-X8g3F4/librostlab-blast-1.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-X8g3F4' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [470 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 1987 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bison bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base graphviz groff-base intltool-debian libabsl20220623 libann0 libaom3 libapache-pom-java libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libavif15 libbrotli1 libbsd0 libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcairo2 libcdt5 libcgraph6 libclang-cpp14 libclang1-14 libcom-err2:mips64el libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libdatrie1 libdav1d6 libde265-0 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgd3 libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgraphite2-3 libgssapi-krb5-2:mips64el libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libheif1 libice6 libicu72 libio-string-perl libjbig0 libjpeg62-turbo libk5crypto3:mips64el libkeyutils1:mips64el libkpathsea6 libkrb5-3:mips64el libkrb5support0:mips64el liblab-gamut1 liblerc4 libllvm14 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmpdec3 libncursesw6 libnsl-dev:mips64el libnsl2:mips64el libnuma1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8 librostlab3:mips64el librostlab3-dev:mips64el libsm6 libsqlite3-0 libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libsvtav1enc1 libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libthai-data libthai0 libtiff6 libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libwebp7 libx11-6 libx11-data libx265-199 libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libyuv0 libz3-4 libzzip-0-13 linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db media-types po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bison-doc gcc-12-locales cpp-12-doc cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch flex-doc g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el libavalon-framework-java libcommons-logging-java-doc libexcalibur-logkit-java liblog4j1.2-java libgd-tools low-memory-monitor krb5-doc:mips64el krb5-user:mips64el librostlab-doc:mips64el libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: libfl-dev curl | wget | lynx fonts-liberation2 libidn2-0:mips64el libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin krb5-locales:mips64el libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bison bsdextrautils cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz file flex fontconfig fontconfig-config fonts-dejavu-core fonts-lmodern g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base graphviz groff-base intltool-debian libabsl20220623 libann0 libaom3 libapache-pom-java libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libavif15 libbrotli1 libbsd0 libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcairo2 libcdt5 libcgraph6 libclang-cpp14 libclang1-14 libcom-err2:mips64el libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libdatrie1 libdav1d6 libde265-0 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgd3 libglib2.0-0 libgomp1:mips64el libgomp1-mips64el-cross libgraphite2-3 libgssapi-krb5-2:mips64el libgts-0.7-5 libgvc6 libgvpr2 libharfbuzz0b libheif1 libice6 libicu72 libio-string-perl libjbig0 libjpeg62-turbo libk5crypto3:mips64el libkeyutils1:mips64el libkpathsea6 libkrb5-3:mips64el libkrb5support0:mips64el liblab-gamut1 liblerc4 libllvm14 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1 libmpdec3 libncursesw6 libnsl-dev:mips64el libnsl2:mips64el libnuma1 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8 librostlab3:mips64el librostlab3-dev:mips64el libsm6 libsqlite3-0 libssl3:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libsvtav1enc1 libsynctex2 libteckit0 libtexlua53-5 libtexluajit2 libthai-data libthai0 libtiff6 libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libwebp7 libx11-6 libx11-data libx265-199 libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libyuv0 libz3-4 libzzip-0-13 linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db media-types po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:mips64el sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 208 newly installed, 0 to remove and 0 not upgraded. Need to get 251 MB of archives. After this operation, 995 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [992 B] Get:2 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-2 [287 kB] Get:3 http://localhost:3142/debian sid/main amd64 flex amd64 2.6.4-8.1 [441 kB] Get:4 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:5 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.1-2 [812 kB] Get:6 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.1-2 [2065 kB] Get:8 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.1-2 [25.7 kB] Get:9 http://localhost:3142/debian sid/main amd64 media-types all 8.0.0 [33.4 kB] Get:10 http://localhost:3142/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:11 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-2 [134 kB] Get:12 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:13 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:14 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpython3.11-stdlib amd64 3.11.1-2 [1712 kB] Get:16 http://localhost:3142/debian sid/main amd64 python3.11 amd64 3.11.1-2 [567 kB] Get:17 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.11.1-2 [8704 B] Get:18 http://localhost:3142/debian sid/main amd64 python3 amd64 3.11.1-2 [25.4 kB] Get:19 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:20 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:22 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:23 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:24 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:25 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:26 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:27 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:28 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-1 [1386 kB] Get:29 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:30 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:31 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:32 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:33 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:34 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.39.90.20230104-1cross1 [2801 kB] Get:35 http://localhost:3142/debian sid/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.2.0-14cross2 [37.7 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross2 [8086 kB] Get:38 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:39 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:40 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-14cross2 [33.3 kB] Get:41 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.36-8cross1 [1056 kB] Get:42 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 12.2.0-14cross2 [70.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 12.2.0-14cross2 [102 kB] Get:44 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 12.2.0-14cross2 [7156 B] Get:45 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.2.0-14cross2 [294 kB] Get:46 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross2 [15.9 MB] Get:47 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:48 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 12.2.0-14cross2 [504 kB] Get:49 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mips64el-cross all 6.1.4-1cross1 [1812 kB] Get:50 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.36-8cross1 [1572 kB] Get:51 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.2.0-14cross2 [2065 kB] Get:52 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross2 [9006 kB] Get:53 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:55 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:57 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:58 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:59 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:60 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:63 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:68 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:69 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:70 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB] Get:71 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:72 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:73 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:74 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:75 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:76 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:77 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:78 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:79 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:80 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:81 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:82 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:83 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:84 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.11.7-2 [117 kB] Get:85 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20221030-2 [93.0 kB] Get:86 http://localhost:3142/debian sid/main amd64 libz3-4 amd64 4.8.12-3 [7216 kB] Get:87 http://localhost:3142/debian sid/main amd64 libllvm14 amd64 1:14.0.6-10+b1 [21.8 MB] Get:88 http://localhost:3142/debian sid/main amd64 libclang-cpp14 amd64 1:14.0.6-10+b1 [11.1 MB] Get:89 http://localhost:3142/debian sid/main amd64 libclang1-14 amd64 1:14.0.6-10+b1 [6150 kB] Get:90 http://localhost:3142/debian sid/main amd64 libxapian30 amd64 1.4.21-1 [1111 kB] Get:91 http://localhost:3142/debian sid/main amd64 doxygen amd64 1.9.4-4 [4611 kB] Get:92 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:93 http://localhost:3142/debian sid/main amd64 libpng16-16 amd64 1.6.39-2 [276 kB] Get:94 http://localhost:3142/debian sid/main amd64 libfreetype6 amd64 2.12.1+dfsg-4 [399 kB] Get:95 http://localhost:3142/debian sid/main amd64 fonts-dejavu-core all 2.37-2 [1069 kB] Get:96 http://localhost:3142/debian sid/main amd64 fontconfig-config amd64 2.14.1-3 [315 kB] Get:97 http://localhost:3142/debian sid/main amd64 libfontconfig1 amd64 2.14.1-3 [386 kB] Get:98 http://localhost:3142/debian sid/main amd64 fontconfig amd64 2.14.1-3 [449 kB] Get:99 http://localhost:3142/debian sid/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get:100 http://localhost:3142/debian sid/main mips64el gcc-11-base mips64el 11.3.0-11 [38.3 kB] Get:101 http://localhost:3142/debian sid/main mips64el gcc-12-base mips64el 12.2.0-14 [37.5 kB] Get:102 http://localhost:3142/debian sid/main amd64 libann0 amd64 1.1.2+doc-9 [24.2 kB] Get:103 http://localhost:3142/debian sid/main amd64 libcdt5 amd64 2.42.2-7+b3 [39.8 kB] Get:104 http://localhost:3142/debian sid/main amd64 libcgraph6 amd64 2.42.2-7+b3 [63.2 kB] Get:105 http://localhost:3142/debian sid/main amd64 libaom3 amd64 3.5.0-1 [1796 kB] Get:106 http://localhost:3142/debian sid/main amd64 libdav1d6 amd64 1.0.0-2 [495 kB] Get:107 http://localhost:3142/debian sid/main amd64 libabsl20220623 amd64 20220623.1-1 [391 kB] Get:108 http://localhost:3142/debian sid/main amd64 libgav1-1 amd64 0.18.0-1+b1 [332 kB] Get:109 http://localhost:3142/debian sid/main amd64 librav1e0 amd64 0.5.1-6 [763 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsvtav1enc1 amd64 1.4.1+dfsg-1 [2121 kB] Get:111 http://localhost:3142/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.2-1+b1 [169 kB] Get:112 http://localhost:3142/debian sid/main amd64 libyuv0 amd64 0.0~git20230104.6e4b0ac-1 [167 kB] Get:113 http://localhost:3142/debian sid/main amd64 libavif15 amd64 0.11.1-1 [93.8 kB] Get:114 http://localhost:3142/debian sid/main amd64 libde265-0 amd64 1.0.9-1.1 [250 kB] Get:115 http://localhost:3142/debian sid/main amd64 libnuma1 amd64 2.0.16-1 [21.0 kB] Get:116 http://localhost:3142/debian sid/main amd64 libx265-199 amd64 3.5-2+b1 [1150 kB] Get:117 http://localhost:3142/debian sid/main amd64 libheif1 amd64 1.14.2-1 [209 kB] Get:118 http://localhost:3142/debian sid/main amd64 libdeflate0 amd64 1.14-1 [61.4 kB] Get:119 http://localhost:3142/debian sid/main amd64 libjbig0 amd64 2.1-6.1 [31.7 kB] Get:120 http://localhost:3142/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-2 [170 kB] Get:121 http://localhost:3142/debian sid/main amd64 libwebp7 amd64 1.2.4-0.1 [285 kB] Get:122 http://localhost:3142/debian sid/main amd64 libtiff6 amd64 4.5.0-4 [315 kB] Get:123 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:124 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:125 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:126 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.8.3-3 [292 kB] Get:127 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.8.3-3 [759 kB] Get:128 http://localhost:3142/debian sid/main amd64 libxpm4 amd64 1:3.5.12-1.1 [48.4 kB] Get:129 http://localhost:3142/debian sid/main amd64 libgd3 amd64 2.3.3-7+b1 [124 kB] Get:130 http://localhost:3142/debian sid/main amd64 libglib2.0-0 amd64 2.74.5-1 [1396 kB] Get:131 http://localhost:3142/debian sid/main amd64 libgts-0.7-5 amd64 0.7.6+darcs121130-5+b1 [160 kB] Get:132 http://localhost:3142/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1 [546 kB] Get:133 http://localhost:3142/debian sid/main amd64 libxcb-render0 amd64 1.15-1 [115 kB] Get:134 http://localhost:3142/debian sid/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:135 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:136 http://localhost:3142/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:137 http://localhost:3142/debian sid/main amd64 libcairo2 amd64 1.16.0-7 [575 kB] Get:138 http://localhost:3142/debian sid/main amd64 libltdl7 amd64 2.4.7-5 [393 kB] Get:139 http://localhost:3142/debian sid/main amd64 libfribidi0 amd64 1.0.8-2.1 [65.0 kB] Get:140 http://localhost:3142/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-1 [81.2 kB] Get:141 http://localhost:3142/debian sid/main amd64 libharfbuzz0b amd64 6.0.0-1 [1938 kB] Get:142 http://localhost:3142/debian sid/main amd64 libthai-data all 0.1.29-1 [176 kB] Get:143 http://localhost:3142/debian sid/main amd64 libdatrie1 amd64 0.2.13-2+b1 [43.3 kB] Get:144 http://localhost:3142/debian sid/main amd64 libthai0 amd64 0.1.29-1 [57.5 kB] Get:145 http://localhost:3142/debian sid/main amd64 libpango-1.0-0 amd64 1.50.12+ds-1 [212 kB] Get:146 http://localhost:3142/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.50.12+ds-1 [47.4 kB] Get:147 http://localhost:3142/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.50.12+ds-1 [34.2 kB] Get:148 http://localhost:3142/debian sid/main amd64 libpathplan4 amd64 2.42.2-7+b3 [42.2 kB] Get:149 http://localhost:3142/debian sid/main amd64 libgvc6 amd64 2.42.2-7+b3 [678 kB] Get:150 http://localhost:3142/debian sid/main amd64 libgvpr2 amd64 2.42.2-7+b3 [189 kB] Get:151 http://localhost:3142/debian sid/main amd64 liblab-gamut1 amd64 2.42.2-7+b3 [198 kB] Get:152 http://localhost:3142/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:153 http://localhost:3142/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:154 http://localhost:3142/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:155 http://localhost:3142/debian sid/main amd64 libxt6 amd64 1:1.2.1-1 [189 kB] Get:156 http://localhost:3142/debian sid/main amd64 libxmu6 amd64 2:1.1.3-3 [60.1 kB] Get:157 http://localhost:3142/debian sid/main amd64 libxaw7 amd64 2:1.0.14-1 [201 kB] Get:158 http://localhost:3142/debian sid/main amd64 graphviz amd64 2.42.2-7+b3 [611 kB] Get:159 http://localhost:3142/debian sid/main amd64 libapache-pom-java all 29-2 [5276 B] Get:160 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 12.2.0-14 [70.5 kB] Get:161 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.36-8 [2365 kB] Get:162 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 12.2.0-14 [7444 B] Get:163 http://localhost:3142/debian sid/main mips64el linux-libc-dev mips64el 6.1.7-1 [1704 kB] Get:164 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.33-2 [94.0 kB] Get:165 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.33-2 [127 kB] Get:166 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.46.6~rc1-1.1 [16.0 kB] Get:167 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-1 [30.1 kB] Get:168 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-1 [85.2 kB] Get:169 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-2 [8432 B] Get:170 http://localhost:3142/debian sid/main mips64el libssl3 mips64el 3.0.7-2 [1479 kB] Get:171 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-1 [296 kB] Get:172 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-1 [117 kB] Get:173 http://localhost:3142/debian sid/main mips64el libtirpc3 mips64el 1.3.3+ds-1 [74.9 kB] Get:174 http://localhost:3142/debian sid/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:175 http://localhost:3142/debian sid/main mips64el libtirpc-dev mips64el 1.3.3+ds-1 [200 kB] Get:176 http://localhost:3142/debian sid/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:177 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.36-8 [1576 kB] Get:178 http://localhost:3142/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:179 http://localhost:3142/debian sid/main amd64 libcommons-logging-java all 1.2-3 [62.4 kB] Get:180 http://localhost:3142/debian sid/main amd64 libfontbox-java all 1:1.8.16-2 [211 kB] Get:181 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 12.2.0-14 [104 kB] Get:182 http://localhost:3142/debian sid/main mips64el libgcc-11-dev mips64el 11.3.0-11 [280 kB] Get:183 http://localhost:3142/debian sid/main amd64 libkpathsea6 amd64 2022.20220321.62855-5 [152 kB] Get:184 http://localhost:3142/debian sid/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:185 http://localhost:3142/debian sid/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:186 http://localhost:3142/debian sid/main amd64 libpdfbox-java all 1:1.8.16-2 [5205 kB] Get:187 http://localhost:3142/debian sid/main amd64 libptexenc1 amd64 2022.20220321.62855-5 [43.5 kB] Get:188 http://localhost:3142/debian sid/main mips64el librostlab3 mips64el 1.0.20-12 [6628 B] Get:189 http://localhost:3142/debian sid/main mips64el librostlab3-dev mips64el 1.0.20-12 [14.2 kB] Get:190 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 12.2.0-14 [546 kB] Get:191 http://localhost:3142/debian sid/main mips64el libstdc++-11-dev mips64el 11.3.0-11 [2004 kB] Get:192 http://localhost:3142/debian sid/main amd64 libsynctex2 amd64 2022.20220321.62855-5 [59.6 kB] Get:193 http://localhost:3142/debian sid/main amd64 libteckit0 amd64 2.5.11+ds1-1+b1 [335 kB] Get:194 http://localhost:3142/debian sid/main amd64 libtexlua53-5 amd64 2022.20220321.62855-5 [111 kB] Get:195 http://localhost:3142/debian sid/main amd64 libtexluajit2 amd64 2022.20220321.62855-5 [246 kB] Get:196 http://localhost:3142/debian sid/main amd64 libxi6 amd64 2:1.8-1+b1 [84.2 kB] Get:197 http://localhost:3142/debian sid/main amd64 libzzip-0-13 amd64 0.13.72+dfsg.1-1.1 [58.3 kB] Get:198 http://localhost:3142/debian sid/main amd64 tex-common all 6.18 [32.5 kB] Get:199 http://localhost:3142/debian sid/main amd64 preview-latex-style all 12.2-1 [201 kB] Get:200 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:201 http://localhost:3142/debian sid/main amd64 texlive-binaries amd64 2022.20220321.62855-5 [10.5 MB] Get:202 http://localhost:3142/debian sid/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:203 http://localhost:3142/debian sid/main amd64 texlive-base all 2022.20230122-1 [21.9 MB] Get:204 http://localhost:3142/debian sid/main amd64 texlive-fonts-recommended all 2022.20230122-1 [4987 kB] Get:205 http://localhost:3142/debian sid/main amd64 texlive-latex-base all 2022.20230122-1 [1181 kB] Get:206 http://localhost:3142/debian sid/main amd64 texlive-latex-recommended all 2022.20230122-1 [8880 kB] Get:207 http://localhost:3142/debian sid/main amd64 texlive-pictures all 2022.20230122-1 [15.8 MB] Get:208 http://localhost:3142/debian sid/main amd64 texlive-latex-extra all 2022.20230122-1 [19.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 251 MB in 2s (131 MB/s) Selecting previously unselected package m4. (Reading database ... 15192 files and directories currently installed.) Preparing to unpack .../0-m4_1.4.19-2_amd64.deb ... Unpacking m4 (1.4.19-2) ... Selecting previously unselected package flex. Preparing to unpack .../1-flex_2.6.4-8.1_amd64.deb ... Unpacking flex (2.6.4-8.1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../3-libpython3.11-minimal_3.11.1-2_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.1-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../4-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../5-python3.11-minimal_3.11.1-2_amd64.deb ... Unpacking python3.11-minimal (3.11.1-2) ... Setting up libpython3.11-minimal:amd64 (3.11.1-2) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up python3.11-minimal (3.11.1-2) ... Selecting previously unselected package python3-minimal. (Reading database ... 15704 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.1-2_amd64.deb ... Unpacking python3-minimal (3.11.1-2) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_8.0.0_all.deb ... Unpacking media-types (8.0.0) ... Selecting previously unselected package libmpdec3:amd64. Preparing to unpack .../2-libmpdec3_2.5.1-2_amd64.deb ... Unpacking libmpdec3:amd64 (2.5.1-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.4-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-2) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... 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(Reading database ... 16158 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.1-2_amd64.deb ... Unpacking python3 (3.11.1-2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-10_amd64.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:amd64. 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Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../015-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../016-binutils-mips64el-linux-gnuabi64_2.39.90.20230104-1cross1_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.39.90.20230104-1cross1) ... Selecting previously unselected package bison. Preparing to unpack .../017-bison_2%3a3.8.2+dfsg-1+b1_amd64.deb ... Unpacking bison (2:3.8.2+dfsg-1+b1) ... Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64-base:amd64. 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Setting up autoconf (2.71-3) ... Setting up libwebp7:amd64 (1.2.4-0.1) ... Setting up libnuma1:amd64 (2.0.16-1) ... Setting up librostlab3:mips64el (1.0.20-12) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libtiff6:amd64 (4.5.0-4) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up fonts-lmodern (2.005-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libthai-data (0.1.29-1) ... Setting up linux-libc-dev-mips64el-cross (6.1.4-1cross1) ... Setting up libcdt5:amd64 (2.42.2-7+b3) ... Setting up gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.2.0-14cross2) ... Setting up libcgraph6:amd64 (2.42.2-7+b3) ... Setting up cpp-12-mips64el-linux-gnuabi64 (12.2.0-14cross2) ... Setting up libde265-0:amd64 (1.0.9-1.1) ... Setting up libfile-homedir-perl (1.006-2) ... 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Setting up gettext (0.21-10) ... Setting up libatomic1-mips64el-cross (12.2.0-14cross2) ... Setting up libpdfbox-java (1:1.8.16-2) ... Setting up libavif15:amd64 (0.11.1-1) ... Setting up libtool (2.4.7-5) ... Setting up libxcb-render0:amd64 (1.15-1) ... Setting up fontconfig-config (2.14.1-3) ... Setting up libedit2:amd64 (3.1-20221030-2) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.2-3) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up librostlab3-dev:mips64el (1.0.20-12) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-1) ... Setting up libptexenc1:amd64 (2022.20220321.62855-5) ... Setting up libfreetype6:amd64 (2.12.1+dfsg-4) ... Setting up libc6-dev-mips64el-cross (2.36-8cross1) ... Setting up ucf (3.0043) ... Setting up libstdc++6-mips64el-cross (12.2.0-14cross2) ... Setting up libx265-199:amd64 (3.5-2+b1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libllvm14:amd64 (1:14.0.6-10+b1) ... Setting up libgvpr2:amd64 (2.42.2-7+b3) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libx11-6:amd64 (2:1.8.3-3) ... Setting up libharfbuzz0b:amd64 (6.0.0-1) ... Setting up libfontconfig1:amd64 (2.14.1-3) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.14.1-3) ... Regenerating fonts cache... done. Setting up libgcc-12-dev-mips64el-cross (12.2.0-14cross2) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.2.0-14cross2) ... Setting up libxpm4:amd64 (1:3.5.12-1.1) ... Setting up libstdc++-12-dev-mips64el-cross (12.2.0-14cross2) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.1-2) ... Setting up libpango-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libheif1:amd64 (1.14.2-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libclang1-14 (1:14.0.6-10+b1) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.2.0-14cross2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libcairo2:amd64 (1.16.0-7) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libgd3:amd64 (2.3.3-7+b1) ... Setting up libclang-cpp14 (1:14.0.6-10+b1) ... Setting up libxt6:amd64 (1:1.2.1-1) ... Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpangoft2-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.50.12+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.1-2) ... Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up python3.11 (3.11.1-2) ... Setting up libxmu6:amd64 (2:1.1.3-3) ... Setting up libxi6:amd64 (2:1.8-1+b1) ... Setting up preview-latex-style (12.2-1) ... Setting up debhelper (13.11.4) ... Setting up python3 (3.11.1-2) ... Setting up libxaw7:amd64 (2:1.0.14-1) ... Setting up doxygen (1.9.4-4) ... Setting up libgvc6 (2.42.2-7+b3) ... Setting up libxml-simple-perl (2.25-2) ... Setting up texlive-binaries (2022.20220321.62855-5) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2022.20230122-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up graphviz (2.42.2-7+b3) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up texlive-latex-base (2022.20230122-1) ... Setting up texlive-latex-recommended (2022.20230122-1) ... Setting up texlive-pictures (2022.20230122-1) ... Setting up texlive-fonts-recommended (2022.20230122-1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up texlive-latex-extra (2022.20230122-1) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (12.2.0-14) ... Setting up libc6:mips64el (2.36-8) ... Setting up libstdc++6:mips64el (12.2.0-14) ... Setting up libkeyutils1:mips64el (1.6.3-2) ... Setting up libssl3:mips64el (3.0.7-2) ... Setting up libcrypt1:mips64el (1:4.4.33-2) ... Setting up libcom-err2:mips64el (1.46.6~rc1-1.1) ... Setting up libgomp1:mips64el (12.2.0-14) ... Setting up libkrb5support0:mips64el (1.20.1-1) ... Setting up libatomic1:mips64el (12.2.0-14) ... Setting up libk5crypto3:mips64el (1.20.1-1) ... Setting up libgcc-11-dev:mips64el (11.3.0-11) ... Setting up libcrypt-dev:mips64el (1:4.4.33-2) ... Setting up libkrb5-3:mips64el (1.20.1-1) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-1) ... Setting up libtirpc3:mips64el (1.3.3+ds-1) ... Setting up libtirpc-dev:mips64el (1.3.3+ds-1) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.36-8) ... Setting up libstdc++-11-dev:mips64el (11.3.0-11) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.19 g++-11_11.3.0-11 g++-12_12.2.0-14 gcc-11_11.3.0-11 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mips64el-cross_12.2.0-14cross2 libstdc++6_12.2.0-14 libstdc++6-mips64el-cross_12.2.0-14cross2 linux-libc-dev_6.1.7-1 Package versions: adduser_3.130 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 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+------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librostlab-blast Binary: librostlab-blast0v5, librostlab-blast0-dev, librostlab-blast-doc Architecture: any all Version: 1.0.1-13 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille Homepage: https://rostlab.org/ Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Package-List: librostlab-blast-doc deb doc optional arch=all librostlab-blast0-dev deb libdevel optional arch=any librostlab-blast0v5 deb libs optional arch=any Checksums-Sha1: 5b5cff416807dae2daad3d17540c7fa70bb8bc70 384023 librostlab-blast_1.0.1.orig.tar.gz 666d475fcd709b263d5a16d8402a51e82b93ad20 6540 librostlab-blast_1.0.1-13.debian.tar.xz Checksums-Sha256: 7c0a0181253b3006585b7ffb755fb9720181e70d91dd25ec511b5d88bd6ece45 384023 librostlab-blast_1.0.1.orig.tar.gz 067fb54fe8f18a5ef1d982aca23e52ce4685adf5e4609b8d3f40245a9d13283e 6540 librostlab-blast_1.0.1-13.debian.tar.xz Files: da93e9eed00ac33083748462b50f673f 384023 librostlab-blast_1.0.1.orig.tar.gz 0738f235ddc4811b63d72af1aedfda01 6540 librostlab-blast_1.0.1-13.debian.tar.xz Dgit: c34fec849576d38fb1b7f38f56213c8398901edb debian archive/debian/1.0.1-13 https://git.dgit.debian.org/librostlab-blast -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEj5GyJ8fW8rGUjII2eTz2fo8NEdoFAmM1lEoUHGVtb2xsaWVy QGRlYmlhbi5vcmcACgkQeTz2fo8NEdqZUxAApKCSbeWPhjzSQl157vn7rjWM1Nn9 9dX9rM4VrgZsMfpg/2tNe72QLxjf/aXNaSykR61EnyaNzfU1Ds3qyChIS7XdE/75 AS5EF1NLTGX9cFjsGWzvGX34MbhmsuLovK60yyVKit/Jbv7nF/zOJ1Lm2ziuvyPy 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dpkg-source: info: unpacking librostlab-blast_1.0.1-13.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch dpkg-source: info: applying modernize_c++.patch dpkg-source: info: applying gcc-12.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-e3ac2b4e-f1d7-4d92-b36f-ac070944d453 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-13 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:11: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:11: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/mips64el-linux-gnuabi64 --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mips64el-linux-gnuabi64 --enable-doxygen-dot --enable-doxygen-pdf=No configure: loading site script /etc/dpkg-cross/cross-config.mips64el checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for mips64el-linux-gnuabi64-strip... mips64el-linux-gnuabi64-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for mips64el-linux-gnuabi64-gcc... mips64el-linux-gnuabi64-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether mips64el-linux-gnuabi64-gcc accepts -g... yes checking for mips64el-linux-gnuabi64-gcc option to enable C11 features... none needed checking whether mips64el-linux-gnuabi64-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of mips64el-linux-gnuabi64-gcc... none checking for mips64el-linux-gnuabi64-g++... mips64el-linux-gnuabi64-g++ checking whether the compiler supports GNU C++... yes checking whether mips64el-linux-gnuabi64-g++ accepts -g... yes checking for mips64el-linux-gnuabi64-g++ option to enable C++11 features... none needed checking dependency style of mips64el-linux-gnuabi64-g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... mips64el-unknown-linux-gnuabi64 checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by mips64el-linux-gnuabi64-gcc... /usr/mips64el-linux-gnuabi64/bin/ld checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/mips64el-linux-gnuabi64-nm -B checking the name lister (/usr/bin/mips64el-linux-gnuabi64-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to mips64el-unknown-linux-gnuabi64 format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/mips64el-linux-gnuabi64/bin/ld option to reload object files... -r checking for mips64el-linux-gnuabi64-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for mips64el-linux-gnuabi64-objdump... mips64el-linux-gnuabi64-objdump checking how to recognize dependent libraries... pass_all checking for mips64el-linux-gnuabi64-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for mips64el-linux-gnuabi64-ar... mips64el-linux-gnuabi64-ar checking for archiver @FILE support... @ checking for mips64el-linux-gnuabi64-strip... (cached) mips64el-linux-gnuabi64-strip checking for mips64el-linux-gnuabi64-ranlib... mips64el-linux-gnuabi64-ranlib checking command to parse /usr/bin/mips64el-linux-gnuabi64-nm -B output from mips64el-linux-gnuabi64-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for mips64el-linux-gnuabi64-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if mips64el-linux-gnuabi64-gcc supports -fno-rtti -fno-exceptions... no checking for mips64el-linux-gnuabi64-gcc option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-gcc PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-gcc static flag -static works... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-gcc supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-gcc linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... mips64el-linux-gnuabi64-g++ -E checking for ld used by mips64el-linux-gnuabi64-g++... /usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip checking if the linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) is GNU ld... yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking for mips64el-linux-gnuabi64-g++ option to produce PIC... -fPIC -DPIC checking if mips64el-linux-gnuabi64-g++ PIC flag -fPIC -DPIC works... yes checking if mips64el-linux-gnuabi64-g++ static flag -static works... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... yes checking if mips64el-linux-gnuabi64-g++ supports -c -o file.o... (cached) yes checking whether the mips64el-linux-gnuabi64-g++ linker (/usr/mips64el-linux-gnuabi64/bin/ld -m elf64ltsmip) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for rostlab/aux_functions.h... yes checking for rostlab/rostlab_stdexcept.h... yes checking for mips64el-linux-gnuabi64-doxygen... no checking for doxygen... /usr/bin/doxygen checking for mips64el-linux-gnuabi64-perl... no checking for perl... /usr/bin/perl checking for mips64el-linux-gnuabi64-dot... no checking for dot... /usr/bin/dot checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in lib make[4]: Entering directory '/<>/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /<>/lib/blast-parser-parser.ypp:1.1-9: warning: POSIX Yacc does not support %skeleton [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:1.11-20: warning: POSIX Yacc does not support string literals [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:20.1-8: warning: POSIX Yacc does not support %require [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:20.10-16: warning: POSIX Yacc does not support string literals [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~ /<>/lib/blast-parser-parser.ypp:21.1-8: warning: POSIX Yacc does not support %defines [-Wyacc] 21 | %defines | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~ /<>/lib/blast-parser-parser.ypp:22.19-34: warning: POSIX Yacc does not support string literals [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-34: warning: deprecated directive: ‘%define namespace "rostlab::blast"’, use ‘%define api.namespace {rostlab::blast}’ [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | %define api.namespace {rostlab::blast} /<>/lib/blast-parser-parser.ypp:24.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 24 | %code requires { | ^~~~~ /<>/lib/blast-parser-parser.ypp:37.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 37 | %error-verbose | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:37.1-14: warning: deprecated directive: ‘%error-verbose’, use ‘%define parse.error verbose’ [-Wdeprecated] 37 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /<>/lib/blast-parser-parser.ypp:39.1-15: warning: POSIX Yacc does not support %initial-action [-Wyacc] 39 | %initial-action | ^~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:53.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 53 | %code { | ^~~~~ /<>/lib/blast-parser-parser.ypp:59.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 59 | %token END 0 "end of file" | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:72.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 72 | %token QUERYEQ "Query=" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:73.29-39: warning: POSIX Yacc does not support string literals [-Wyacc] 73 | %token DATABASECOLON "Database:" | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:74.29-48: warning: POSIX Yacc does not support string literals [-Wyacc] 74 | %token RESFROMROUND "Results from round" | ^~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:75.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 75 | %token SCOREEQ "Score =" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:76.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 76 | %token EXPECTEQ "Expect =" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:77.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 77 | %token METHODCOLON "Method:" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:78.29-42: warning: POSIX Yacc does not support string literals [-Wyacc] 78 | %token IDENTITIESEQ "Identities =" | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:79.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 79 | %token POSITIVESEQ "Positives =" | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:80.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 80 | %token GAPSEQ "Gaps =" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:81.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 81 | %token STRANDEQ "Strand =" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:82.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 82 | %token FRAMEEQ "Frame =" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:83.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 83 | %token QUERYCOLON "Query:" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:84.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 84 | %token SBJCTCOLON "Sbjct:" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:88.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 88 | %destructor { delete $$; } | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:90.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 90 | %printer { debug_stream () << *$$; } | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:91.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 91 | %printer { debug_stream () << $$; } | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:109.9-16: warning: POSIX Yacc does not support string literals [-Wyacc] 109 | query: "Query=" STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:122.11-21: warning: POSIX Yacc does not support string literals [-Wyacc] 122 | database: "Database:" STRING INT INT | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:137.15-34: warning: POSIX Yacc does not support string literals [-Wyacc] 137 | | "Results from round" INT | ^~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:201.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 201 | hsp_headerfield: "Score =" num INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:203.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 203 | | "Expect =" num | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:205.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 205 | | "Method:" STRING | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:207.19-32: warning: POSIX Yacc does not support string literals [-Wyacc] 207 | | "Identities =" INT | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:209.19-31: warning: POSIX Yacc does not support string literals [-Wyacc] 209 | | "Positives =" INT | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:211.19-26: warning: POSIX Yacc does not support string literals [-Wyacc] 211 | | "Gaps =" INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:213.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 213 | | "Strand =" STRING '/' STRING | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:215.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 215 | | "Frame =" INT '/' INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:217.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 217 | | "Frame =" INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:224.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:224.46-53: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:247.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 247 | | "Query:" '0' /* bug as far as I can tell */ | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-34: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make all-am make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1 \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe /bin/bash ../libtool --tag=CXX --mode=compile mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: compile: mips64el-linux-gnuabi64-g++ -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link mips64el-linux-gnuabi64-g++ -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/mips64el-linux-gnuabi64 librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo libtool: link: mips64el-linux-gnuabi64-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/../../../../mips64el-linux-gnuabi64/lib/../lib/crti.o /usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/12 -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/../../../../mips64el-linux-gnuabi64/lib/../lib -L/lib/mips64el-linux-gnuabi64 -L/lib/../lib -L/usr/lib/mips64el-linux-gnuabi64 -L/usr/lib/../lib -L/usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/../../../../mips64el-linux-gnuabi64/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/crtendS.o /usr/lib/gcc-cross/mips64el-linux-gnuabi64/12/../../../../mips64el-linux-gnuabi64/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0 libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0") libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so") libtool: link: mips64el-linux-gnuabi64-ar cr .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: link: mips64el-linux-gnuabi64-ranlib .libs/librostlab-blast.a libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" ) make[5]: Leaving directory '/<>/lib' make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'all-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/<>/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1165 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1441 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. error: Tag file '/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it... /<>/lib/rostlab/blast-parser-location.h:34: warning: the name 'location.hh' supplied as the argument in the \file statement is not an input file /<>/lib/rostlab/blast-parser-parser.h:35: warning: the name 'y.tab.h' supplied as the argument in the \file statement is not an input file Doxygen version used: 1.9.4 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for files in directory /<>/examples Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /<>/lib/rostlab/blast-parser-driver.h... Parsing file /<>/lib/rostlab/blast-parser-driver.h... Preprocessing /<>/lib/rostlab/blast-parser-location.h... Parsing file /<>/lib/rostlab/blast-parser-location.h... Preprocessing /<>/lib/rostlab/blast-parser-parser.h... Parsing file /<>/lib/rostlab/blast-parser-parser.h... Preprocessing /<>/lib/rostlab/blast-parser-position.h... Parsing file /<>/lib/rostlab/blast-parser-position.h... Preprocessing /<>/lib/rostlab/blast-parser-stack.h... Parsing file /<>/lib/rostlab/blast-parser-stack.h... Preprocessing /<>/lib/rostlab/blast-result.h... Parsing file /<>/lib/rostlab/blast-result.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/blast-parser-driver.h... Generating code for file rostlab/blast-parser-location.h... Generating code for file rostlab/blast-parser-parser.h... Generating code for file rostlab/blast-parser-position.h... Generating code for file rostlab/blast-parser-stack.h... Generating code for file rostlab/blast-result.h... Generating file documentation... Generating docs for file rostlab/blast-parser-driver.h... Generating docs for file rostlab/blast-parser-location.h... Generating docs for file rostlab/blast-parser-parser.h... Generating docs for file rostlab/blast-parser-position.h... Generating docs for file rostlab/blast-parser-stack.h... Generating docs for file rostlab/blast-result.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating namespace index... Generating docs for namespace rostlab Generating docs for namespace rostlab::blast Generating docs for compound rostlab::blast::hit... Generating docs for compound rostlab::blast::hsp... Generating docs for compound rostlab::blast::location... Generating docs for compound rostlab::blast::oneline... Generating docs for compound rostlab::blast::parser... Generating docs for nested compound rostlab::blast::parser::basic_symbol... Generating docs for nested compound rostlab::blast::parser::by_kind... Generating docs for nested compound rostlab::blast::parser::context... Generating docs for nested compound rostlab::blast::parser::stack::slice... Generating docs for nested compound rostlab::blast::parser::symbol_kind... Generating docs for nested compound rostlab::blast::parser::symbol_type... Generating docs for nested compound rostlab::blast::parser::syntax_error... Generating docs for nested compound rostlab::blast::parser::token... Generating docs for nested compound rostlab::blast::parser::value_type... Generating docs for compound rostlab::blast::parser_driver... Generating docs for compound rostlab::blast::parser_error... Generating docs for compound rostlab::blast::position... Generating docs for compound rostlab::blast::result... Generating docs for compound rostlab::blast::round... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating module index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 17 parallel threads... Running dot for graph 1/56 Running dot for graph 2/56 Running dot for graph 3/56 Running dot for graph 4/56 Running dot for graph 5/56 Running dot for graph 6/56 Running dot for graph 7/56 Running dot for graph 8/56 Running dot for graph 9/56 Running dot for graph 10/56 Running dot for graph 11/56 Running dot for graph 12/56 Running dot for graph 13/56 Running dot for graph 14/56 Running dot for graph 15/56 Running dot for graph 16/56 Running dot for graph 17/56 Running dot for graph 18/56 Running dot for graph 19/56 Running dot for graph 20/56 Running dot for graph 21/56 Running dot for graph 22/56 Running dot for graph 23/56 Running dot for graph 24/56 Running dot for graph 25/56 Running dot for graph 26/56 Running dot for graph 27/56 Running dot for graph 28/56 Running dot for graph 29/56 Running dot for graph 30/56 Running dot for graph 31/56 Running dot for graph 32/56 Running dot for graph 33/56 Running dot for graph 34/56 Running dot for graph 35/56 Running dot for graph 36/56 Running dot for graph 37/56 Running dot for graph 38/56 Running dot for graph 39/56 Running dot for graph 40/56 Running dot for graph 41/56 Running dot for graph 42/56 Running dot for graph 43/56 Running dot for graph 44/56 Running dot for graph 45/56 Running dot for graph 46/56 Running dot for graph 47/56 Running dot for graph 48/56 Running dot for graph 49/56 Running dot for graph 50/56 Running dot for graph 51/56 Running dot for graph 52/56 Running dot for graph 53/56 Running dot for graph 54/56 Running dot for graph 55/56 Running dot for graph 56/56 Patching output file 1/23 Patching output file 2/23 Patching output file 3/23 Patching output file 4/23 Patching output file 5/23 Patching output file 6/23 Patching output file 7/23 Patching output file 8/23 Patching output file 9/23 Patching output file 10/23 Patching output file 11/23 Patching output file 12/23 Patching output file 13/23 Patching output file 14/23 Patching output file 15/23 Patching output file 16/23 Patching output file 17/23 Patching output file 18/23 Patching output file 19/23 Patching output file 20/23 Patching output file 21/23 Patching output file 22/23 Patching output file 23/23 lookup cache used 647/65536 hits=3167 misses=740 finished... make[2]: Leaving directory '/<>/lib' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in lib make[2]: Entering directory '/<>/lib' make install-am make[3]: Entering directory '/<>/lib' make[4]: Entering directory '/<>/lib' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64' libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64 && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.la libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.a libtool: install: mips64el-linux-gnuabi64-ranlib /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.a libtool: warning: remember to run 'libtool --finish /usr/lib/mips64el-linux-gnuabi64' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/<>/debian/tmp/usr/include/rostlab' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/<>/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/<>/lib' make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/doc/librostlab-blast/examples' /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/<>/debian/tmp/usr/share/doc/librostlab-blast/examples' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --exclude-la \ --v5 \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab-blast0-dev/usr/lib/mips64el-linux-gnuabi64 install -d -m 755 debian/librostlab-blast0v5/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/mips64el-linux-gnuabi64 mv debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/mips64el-linux-gnuabi64 mv /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/mips64el-linux-gnuabi64 mv /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/mips64el-linux-gnuabi64 PKGDEV=librostlab-blast0-dev PKGSHL=librostlab-blast0v5 install -d -m 755 debian/librostlab-blast0-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' find debian -name jquery.js -delete dh_link make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xlibrostlab-blast.tag make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-13_mips64el.deb'. dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-13_mips64el.deb'. dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-13_mips64el.deb'. dpkg-genbuildinfo --build=any -O../librostlab-blast_1.0.1-13_mips64el.buildinfo dpkg-genchanges --build=any -O../librostlab-blast_1.0.1-13_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-30T00:22:14Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ librostlab-blast_1.0.1-13_mips64el.changes: ------------------------------------------- Format: 1.8 Date: Thu, 29 Sep 2022 14:37:03 +0200 Source: librostlab-blast Binary: librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.1-13 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra Closes: 1012990 Changes: librostlab-blast (1.0.1-13) unstable; urgency=medium . * Team upload. * gcc-12.patch: added; fix ftbfs with gcc-12. (Closes: #1012990) * Standards-Version: 4.6.1 (routine-update) * d/rules: filter librostlab-blast.tag to remove build path; attempt to improve build reproducibility. * d/rules: limit dh_installdocs to architecture independent builds. Checksums-Sha1: 76c34f20d6c6bc9b7b45df3cd9d5442f9b64ac6a 94256 librostlab-blast0-dev_1.0.1-13_mips64el.deb 54b9b6c32ee091c255383d4b98e3ca4bb0fc0676 414540 librostlab-blast0v5-dbgsym_1.0.1-13_mips64el.deb b9a5f7b33b10fb09c60169ede152849154638955 73492 librostlab-blast0v5_1.0.1-13_mips64el.deb 1e80f58781c1e0b45040f0a0a9e3832b2c131aac 9624 librostlab-blast_1.0.1-13_mips64el.buildinfo Checksums-Sha256: 120e87d72bb729929becc40657a8db941c3a14c65befc2c6a4b60110d430a328 94256 librostlab-blast0-dev_1.0.1-13_mips64el.deb 1895c5a2b73813379d3ad069422cc2affa6271c4e188c287b17f5b006dd2bb2d 414540 librostlab-blast0v5-dbgsym_1.0.1-13_mips64el.deb f69ddc030e573be3e9ce02d51aa0e7809c2dc18fd3d7d69df5de445cd5ee2aed 73492 librostlab-blast0v5_1.0.1-13_mips64el.deb ce13cef16c6e8e27e9a79c930ae48d43767ccd89929e5165da6a8eee08172006 9624 librostlab-blast_1.0.1-13_mips64el.buildinfo Files: 19f53eb1dc486019bc152895c985e801 94256 libdevel optional librostlab-blast0-dev_1.0.1-13_mips64el.deb 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autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2.15-2), binutils (= 2.40-2), binutils-common (= 2.40-2), binutils-x86-64-linux-gnu (= 2.40-2), bison (= 2:3.8.2+dfsg-1+b1), bsdextrautils (= 2.38.1-4), bsdutils (= 1:2.38.1-4), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-11 (= 11.3.0-11), cpp-12 (= 12.2.0-14), d-shlibs (= 0.104), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debian-archive-keyring (= 2021.1.1), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-3), doxygen (= 1.9.4-4), dpkg (= 1.21.19), dpkg-dev (= 1.21.19), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), flex (= 2.6.4-8.1), fontconfig (= 2.14.1-3), fontconfig-config (= 2.14.1-3), fonts-dejavu-core (= 2.37-2), fonts-lmodern (= 2.005-1), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-11 (= 11.3.0-11), gcc-11-base (= 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(= 1.23-3), libgdbm6 (= 1.23-3), libglib2.0-0 (= 2.74.5-1), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.8-4), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgraphite2-3 (= 1.3.14-1), libgssapi-krb5-2 (= 1.20.1-1), libgts-0.7-5 (= 0.7.6+darcs121130-5+b1), libgvc6 (= 2.42.2-7+b3), libgvpr2 (= 2.42.2-7+b3), libharfbuzz0b (= 6.0.0-1), libheif1 (= 1.14.2-1), libhogweed6 (= 3.8.1-2), libice6 (= 2:1.0.10-1), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libjbig0 (= 2.1-6.1), libjpeg62-turbo (= 1:2.1.2-1+b1), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-2), libkpathsea6 (= 2022.20220321.62855-5), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), liblab-gamut1 (= 2.42.2-7+b3), liblerc4 (= 4.0.0+ds-2), libllvm14 (= 1:14.0.6-10+b1), liblsan0 (= 12.2.0-14), libltdl7 (= 2.4.7-5), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.0), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4), libmpc3 (= 1.3.1-1), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4-2), libnettle8 (= 3.8.1-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnuma1 (= 2.0.16-1), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpango-1.0-0 (= 1.50.12+ds-1), libpangocairo-1.0-0 (= 1.50.12+ds-1), libpangoft2-1.0-0 (= 1.50.12+ds-1), libpaper-utils (= 1.1.28+b1), libpaper1 (= 1.1.28+b1), libpathplan4 (= 2.42.2-7+b3), libpcre2-8-0 (= 10.42-1), libpdfbox-java (= 1:1.8.16-2), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpixman-1-0 (= 0.42.2-1), libpng16-16 (= 1.6.39-2), libptexenc1 (= 2022.20220321.62855-5), libpython3-stdlib (= 3.11.1-2), libpython3.11-minimal (= 3.11.1-2), libpython3.11-stdlib (= 3.11.1-2), libquadmath0 (= 12.2.0-14), librav1e0 (= 0.5.1-6), libreadline8 (= 8.2-1.3), librostlab3 (= 1.0.20-12), librostlab3-dev (= 1.0.20-12), libseccomp2 (= 2.5.4-1+b2), libselinux1 (= 3.4-1+b4), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1+b4), libsepol2 (= 3.4-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.38.1-4), libsqlite3-0 (= 3.40.1-1), libssl3 (= 3.0.7-2), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsvtav1enc1 (= 1.4.1+dfsg-1), libsynctex2 (= 2022.20220321.62855-5), libsystemd0 (= 252.4-2), libtasn1-6 (= 4.19.0-2), libteckit0 (= 2.5.11+ds1-1+b1), libtexlua53-5 (= 2022.20220321.62855-5), libtexluajit2 (= 2022.20220321.62855-5), libtext-glob-perl (= 0.11-3), libthai-data (= 0.1.29-1), libthai0 (= 0.1.29-1), libtiff6 (= 4.5.0-4), libtinfo6 (= 6.4-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan0 (= 11.3.0-11), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.4-2), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4), libwebp7 (= 1.2.4-0.1), libx11-6 (= 2:1.8.3-3), libx11-data (= 2:1.8.3-3), libx265-199 (= 3.5-2+b1), libxapian30 (= 1.4.21-1), libxau6 (= 1:1.0.9-1), libxaw7 (= 2:1.0.14-1), libxcb-render0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb1 (= 1.15-1), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1+b1), libxi6 (= 2:1.8-1+b1), libxml2 (= 2.9.14+dfsg-1.1+b2), libxmu6 (= 2:1.1.3-3), libxpm4 (= 1:3.5.12-1.1), libxrender1 (= 1:0.9.10-1.1), libxt6 (= 1:1.2.1-1), libxxhash0 (= 0.8.1-1), libyuv0 (= 0.0~git20230104.6e4b0ac-1), libz3-4 (= 4.8.12-3), libzstd1 (= 1.5.2+dfsg2-3), libzzip-0-13 (= 0.13.72+dfsg.1-1.1), linux-libc-dev (= 6.1.7-1), login (= 1:4.13+dfsg1-1), m4 (= 1.4.19-2), make (= 4.3-4.1), man-db (= 2.11.2-1), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), ncurses-base (= 6.4-2), ncurses-bin (= 6.4-2), passwd (= 1:4.13+dfsg1-1), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 12.2-1), python3 (= 3.11.1-2), python3-minimal (= 3.11.1-2), python3.11 (= 3.11.1-2), python3.11-minimal (= 3.11.1-2), readline-common (= 8.2-1.3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-2), t1utils (= 1.41-4), tar (= 1.34+dfsg-1.1), tex-common (= 6.18), texlive-base (= 2022.20230122-1), texlive-binaries (= 2022.20220321.62855-5), texlive-fonts-recommended (= 2022.20230122-1), texlive-latex-base (= 2022.20230122-1), texlive-latex-extra (= 2022.20230122-1), texlive-latex-recommended (= 2022.20230122-1), texlive-pictures (= 2022.20230122-1), ucf (= 3.0043), usrmerge (= 35), util-linux (= 2.38.1-4), util-linux-extra (= 2.38.1-4), x11-common (= 1:7.7+23), xdg-utils (= 1.1.3-4.1), xz-utils (= 5.4.1-0.0), zlib1g (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1664455023" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librostlab-blast0-dev_1.0.1-13_mips64el.deb ------------------------------------------- new Debian package, version 2.0. size 94256 bytes: control archive=1232 bytes. 974 bytes, 24 lines control 1143 bytes, 14 lines md5sums Package: librostlab-blast0-dev Source: librostlab-blast Version: 1.0.1-13 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1461 Depends: librostlab-blast0v5 (= 1.0.1-13), librostlab-dev Suggests: librostlab-blast-doc Conflicts: librostlab-blast-dev Provides: librostlab-blast-dev Section: libdevel Priority: optional Homepage: https://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel) This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains files necessary for developing applications with librostlab-blast. drwxr-xr-x root/root 0 2022-09-29 12:37 ./ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/include/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/include/rostlab/ -rw-r--r-- root/root 4139 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-driver.h -rw-r--r-- root/root 8083 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-location.h -rw-r--r-- root/root 27508 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-parser.h -rw-r--r-- root/root 421 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-position.h -rw-r--r-- root/root 320 2022-09-29 12:37 ./usr/include/rostlab/blast-parser-stack.h -rw-r--r-- root/root 10981 2022-09-29 12:37 ./usr/include/rostlab/blast-result.h drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 1416338 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/librostlab-blast.a lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so -> librostlab-blast.so.0.0.0 drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/ -rw-r--r-- root/root 816 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/README.test -rw-r--r-- root/root 991 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz -rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz -rw-r--r-- root/root 2021 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/copyright drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/ -rw-r--r-- root/root 4462 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali -rw-r--r-- root/root 324 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp -rw-r--r-- root/root 712 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0-dev/run-unit-test librostlab-blast0v5-dbgsym_1.0.1-13_mips64el.deb ------------------------------------------------ new Debian package, version 2.0. size 414540 bytes: control archive=552 bytes. 420 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: librostlab-blast0v5-dbgsym Source: librostlab-blast Version: 1.0.1-13 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 438 Depends: librostlab-blast0v5 (= 1.0.1-13) Section: debug Priority: optional Description: debug symbols for librostlab-blast0v5 Build-Ids: 69e2b8a32b028137599b78a1e25e4f2cc8f2d7a8 drwxr-xr-x root/root 0 2022-09-29 12:37 ./ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/debug/.build-id/69/ -rw-r--r-- root/root 437704 2022-09-29 12:37 ./usr/lib/debug/.build-id/69/e2b8a32b028137599b78a1e25e4f2cc8f2d7a8.debug drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5-dbgsym -> librostlab-blast0v5 librostlab-blast0v5_1.0.1-13_mips64el.deb ----------------------------------------- new Debian package, version 2.0. size 73492 bytes: control archive=1004 bytes. 853 bytes, 21 lines control 339 bytes, 4 lines md5sums 50 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: librostlab-blast0v5 Source: librostlab-blast Version: 1.0.1-13 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1304 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.0), libstdc++6 (>= 11) Conflicts: librostlab-blast0 Section: libs Priority: optional Homepage: https://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains the shared library. drwxr-xr-x root/root 0 2022-09-29 12:37 ./ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/ lrwxrwxrwx root/root 0 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0 -rw-r--r-- root/root 1319648 2022-09-29 12:37 ./usr/lib/mips64el-linux-gnuabi64/librostlab-blast.so.0.0.0 drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/ -rw-r--r-- root/root 991 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz -rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz -rw-r--r-- root/root 2021 2022-09-29 12:37 ./usr/share/doc/librostlab-blast0v5/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [604 B] Get:5 copy:/<>/apt_archive ./ Packages [694 B] Fetched 2261 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:mips64el unzip 0 upgraded, 123 newly installed, 0 to remove and 0 not upgraded. Need to get 12.6 MB of archives. After this operation, 48.6 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.7-2 [1399 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB] Get:8 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB] Get:9 http://localhost:3142/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB] Get:10 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:11 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:12 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl 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sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:77 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:78 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:79 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:80 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:89 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:90 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-3 [21.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:92 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:94 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:95 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:98 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:99 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:100 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:102 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:104 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-2 [105 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:107 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.32-1 [57.6 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB] Get:109 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:111 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:112 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:117 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB] Get:119 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:120 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:121 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:122 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:123 http://localhost:3142/debian sid/main amd64 lintian all 2.116.2 [1129 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.6 MB in 0s (98.3 MB/s) Selecting previously unselected package netbase. (Reading database ... 44459 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.7-2_amd64.deb ... Unpacking openssl (3.0.7-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../004-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.40-1_amd64.deb ... Unpacking gpgconf (2.2.40-1) ... Selecting previously unselected package gpg. Preparing to unpack .../006-gpg_2.2.40-1_amd64.deb ... 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Preparing to unpack .../121-lintian_2.116.2_all.deb ... Unpacking lintian (2.116.2) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:mips64el. Preparing to unpack .../122-sbuild-build-depends-lintian-dummy_0.invalid.0_mips64el.deb ... Unpacking sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... 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Setting up openssl (3.0.7-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.001+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.12.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.80-1) ... Setting up libio-socket-ssl-perl (2.078-1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.2) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 34228 Build-Time: 25 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 59 Job: librostlab-blast_1.0.1-13 Lintian: pass Machine Architecture: amd64 Package: librostlab-blast Package-Time: 92 Source-Version: 1.0.1-13 Space: 34228 Status: successful Version: 1.0.1-13 -------------------------------------------------------------------------------- Finished at 2023-01-30T00:22:14Z Build needed 00:01:32, 34228k disk space