sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | librostlab-blast 1.0.1-14 (armel) Sat, 27 Apr 2024 00:29:53 +0000 | +==============================================================================+ Package: librostlab-blast Version: 1.0.1-14 Source Version: 1.0.1-14 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-6f316c53-24c2-4976-bbfe-8d4da2a65134' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-3rzjfO/resolver-GtOVsu' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main armel Packages [9335 kB] Fetched 9335 kB in 1s (7645 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'librostlab-blast' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/librostlab-blast.git Please use: git clone https://salsa.debian.org/med-team/librostlab-blast.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 393 kB of source archives. Get:1 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-14 (dsc) [2562 B] Get:2 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-14 (tar) [384 kB] Get:3 http://localhost:3142/debian sid/main librostlab-blast 1.0.1-14 (diff) [6716 B] Fetched 393 kB in 0s (6622 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/librostlab-blast-3rzjfO/librostlab-blast-1.0.1' with '<>' I: NOTICE: Log filtering will replace 'build/librostlab-blast-3rzjfO' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [847 B] Get:5 copy:/<>/apt_archive ./ Packages [890 B] Fetched 2346 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bison bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz fakeroot file flex fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-14-base:armel gcc-14-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base graphviz groff-base intltool-debian libabsl20230802 libann0 libaom3 libapache-pom-java libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libavif16 libbrotli1 libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcairo2 libcdt5 libcgraph6 libclang-cpp16t64 libclang1-16t64 libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdatrie1 libdav1d7 libde265-0 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfmt9 libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-13-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgd3 libglib2.0-0t64 libgomp1:armel libgomp1-armel-cross libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu72 libio-string-perl libjbig0 libjpeg62-turbo libkpathsea6 liblab-gamut1 liblerc4 libllvm16t64 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1t64 libncursesw6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8t64 librostlab3-dev:armel librostlab3t64:armel libsharpyuv0 libsm6 libsqlite3-0 libstdc++-13-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsvtav1enc1d1 libsynctex2 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libyaml-perl libyuv0 libz3-4 libzzip-0-13t64 m4 man-db media-types netbase po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bison-doc gcc-13-locales cpp-13-doc cpp-doc dh-make doxygen-latex doxygen-doc doxygen-gui binutils-multiarch flex-doc gcc-13-doc manpages-dev gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gsfonts graphviz-doc groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libavalon-framework-java libexcalibur-logkit-java liblog4j1.2-java libgd-tools low-memory-monitor libheif-plugin-ffmpegdec libheif-plugin-jpegdec libheif-plugin-jpegenc libheif-plugin-j2kdec libheif-plugin-j2kenc libheif-plugin-rav1e libheif-plugin-svtenc librostlab-doc:armel libstdc++-13-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk xapian-tools libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-binaries-sse2 hintview texlive-fonts-recommended-doc texlive-latex-base-doc wp2latex python3-pygments icc-profiles texlive-latex-extra-doc texlive-science texlive-latex-recommended-doc texlive-luatex texlive-pstricks dot2tex prerex texlive-pictures-doc vprerex Recommended packages: libfl-dev curl | wget | lynx fonts-liberation2 libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgts-bin libheif-plugin-aomenc libheif-plugin-x265 libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates lmodern dvisvgm tex-gyre tipa default-jre libspreadsheet-parseexcel-perl texlive-plain-generic ruby tk libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bison bsdextrautils cpp-13-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism doxygen dpkg-cross dwz fakeroot file flex fontconfig fontconfig-config fonts-dejavu-core fonts-dejavu-mono fonts-lmodern g++-13-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-13-arm-linux-gnueabi gcc-13-arm-linux-gnueabi-base gcc-13-base:armel gcc-13-cross-base-ports gcc-14-base:armel gcc-14-cross-base-ports gcc-arm-linux-gnueabi gettext gettext-base graphviz groff-base intltool-debian libabsl20230802 libann0 libaom3 libapache-pom-java libarchive-zip-perl libasan8:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libavif16 libbrotli1 libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcairo2 libcdt5 libcgraph6 libclang-cpp16t64 libclang1-16t64 libcommons-logging-java libcommons-parent-java libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libdatrie1 libdav1d7 libde265-0 libdebhelper-perl libdebian-dpkgcross-perl libdeflate0 libedit2 libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfmt9 libfontbox-java libfontconfig1 libfreetype6 libfribidi0 libgav1-1 libgcc-13-dev:armel libgcc-13-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgd3 libglib2.0-0t64 libgomp1:armel libgomp1-armel-cross libgraphite2-3 libgts-0.7-5t64 libgvc6 libgvpr2 libharfbuzz0b libheif-plugin-dav1d libheif-plugin-libde265 libheif1 libice6 libicu72 libio-string-perl libjbig0 libjpeg62-turbo libkpathsea6 liblab-gamut1 liblerc4 libllvm16t64 liblocale-gettext-perl libltdl7 libmagic-mgc libmagic1t64 libncursesw6 libpango-1.0-0 libpangocairo-1.0-0 libpangoft2-1.0-0 libpaper-utils libpaper1 libpathplan4 libpdfbox-java libpipeline1 libpixman-1-0 libpng16-16t64 libpotrace0 libptexenc1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib librav1e0 libreadline8t64 librostlab3-dev:armel librostlab3t64:armel libsharpyuv0 libsm6 libsqlite3-0 libstdc++-13-dev:armel libstdc++-13-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsvtav1enc1d1 libsynctex2 libteckit0 libtexlua53-5 libthai-data libthai0 libtiff6 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libwebp7 libx11-6 libx11-data libxapian30 libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6t64 libyaml-perl libyuv0 libz3-4 libzzip-0-13t64 m4 man-db media-types netbase po-debconf preview-latex-style python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:armel sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-extra texlive-latex-recommended texlive-pictures ucf x11-common xdg-utils 0 upgraded, 205 newly installed, 0 to remove and 0 not upgraded. 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0.21-14+b1 [161 kB] Get:24 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1+b1 [68.8 kB] Get:25 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.23.0-3+b1 [1180 kB] Get:26 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.40-7 [93.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-2 [38.0 kB] Get:28 http://localhost:3142/debian sid/main amd64 man-db amd64 2.12.1-1 [1411 kB] Get:29 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:30 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:31 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:32 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:33 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-14 [496 kB] Get:34 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.42-4 [3216 kB] Get:35 http://localhost:3142/debian sid/main amd64 bison amd64 2:3.8.2+dfsg-1+b1 [1175 kB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi-base amd64 13.2.0-13cross1 [42.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabi amd64 13.2.0-13cross1 [9283 kB] Get:38 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:13.2.1-6 [4028 B] Get:39 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:40 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base-ports all 13.2.0-13cross1 [38.2 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base-ports all 14-20240201-3cross2 [38.1 kB] Get:42 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.37-12cross1 [884 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 14-20240201-3cross2 [38.9 kB] Get:44 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 14-20240201-3cross2 [110 kB] Get:45 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 14-20240201-3cross2 [9180 B] Get:46 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 14-20240201-3cross2 [2536 kB] Get:47 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 14-20240201-3cross2 [546 kB] Get:48 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 14-20240201-3cross2 [1033 kB] Get:49 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armel-cross all 13.2.0-13cross1 [774 kB] Get:50 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabi amd64 13.2.0-13cross1 [17.8 MB] Get:51 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:13.2.1-6 [1452 B] Get:52 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.37-12cross1 [1292 kB] Get:53 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armel-cross all 13.2.0-13cross1 [2218 kB] Get:54 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http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:76 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:78 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:79 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:80 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:81 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:82 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:83 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:85 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:86 http://localhost:3142/debian sid/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:87 http://localhost:3142/debian sid/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:88 http://localhost:3142/debian sid/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:89 http://localhost:3142/debian sid/main amd64 libllvm16t64 amd64 1:16.0.6-25 [23.1 MB] Get:90 http://localhost:3142/debian sid/main amd64 libclang-cpp16t64 amd64 1:16.0.6-25 [11.5 MB] Get:91 http://localhost:3142/debian sid/main amd64 libclang1-16t64 amd64 1:16.0.6-25 [6580 kB] Get:92 http://localhost:3142/debian sid/main amd64 libfmt9 amd64 9.1.0+ds1-2 [113 kB] Get:93 http://localhost:3142/debian sid/main amd64 libxapian30 amd64 1.4.25-1 [1139 kB] Get:94 http://localhost:3142/debian sid/main amd64 doxygen amd64 1.9.8+ds-2+b1 [4913 kB] Get:95 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:96 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.1.0-2+b3 [305 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpng16-16t64 amd64 1.6.43-5 [278 kB] Get:99 http://localhost:3142/debian sid/main amd64 libfreetype6 amd64 2.13.2+dfsg-1+b4 [439 kB] Get:100 http://localhost:3142/debian sid/main amd64 fonts-dejavu-mono all 2.37-8 [489 kB] Get:101 http://localhost:3142/debian sid/main amd64 fonts-dejavu-core all 2.37-8 [840 kB] Get:102 http://localhost:3142/debian sid/main amd64 fontconfig-config amd64 2.15.0-1.1 [317 kB] Get:103 http://localhost:3142/debian sid/main amd64 libfontconfig1 amd64 2.15.0-1.1 [388 kB] Get:104 http://localhost:3142/debian sid/main amd64 fontconfig amd64 2.15.0-1.1 [463 kB] Get:105 http://localhost:3142/debian sid/main amd64 fonts-lmodern all 2.005-1 [4540 kB] Get:106 http://localhost:3142/debian sid/main armel gcc-13-base armel 13.2.0-23 [44.6 kB] Get:107 http://localhost:3142/debian sid/main armel gcc-14-base armel 14-20240330-1 [43.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libann0 amd64 1.1.2+doc-9+b1 [25.1 kB] Get:109 http://localhost:3142/debian sid/main amd64 libcdt5 amd64 2.42.2-9+b1 [39.8 kB] Get:110 http://localhost:3142/debian sid/main amd64 libcgraph6 amd64 2.42.2-9+b1 [63.6 kB] Get:111 http://localhost:3142/debian sid/main amd64 libaom3 amd64 3.8.2-2 [1869 kB] Get:112 http://localhost:3142/debian sid/main amd64 libdav1d7 amd64 1.4.1-1 [547 kB] Get:113 http://localhost:3142/debian sid/main amd64 libabsl20230802 amd64 20230802.1-4 [464 kB] Get:114 http://localhost:3142/debian sid/main amd64 libgav1-1 amd64 0.19.0-2 [350 kB] Get:115 http://localhost:3142/debian sid/main amd64 librav1e0 amd64 0.7.1-2 [900 kB] Get:116 http://localhost:3142/debian sid/main amd64 libsharpyuv0 amd64 1.3.2-0.4+b1 [108 kB] Get:117 http://localhost:3142/debian sid/main amd64 libsvtav1enc1d1 amd64 1.7.0+dfsg-2+b1 [2169 kB] Get:118 http://localhost:3142/debian sid/main amd64 libjpeg62-turbo amd64 1:2.1.5-3 [167 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyuv0 amd64 0.0~git202401110.af6ac82-1 [169 kB] Get:120 http://localhost:3142/debian sid/main amd64 libavif16 amd64 1.0.4-2 [106 kB] Get:121 http://localhost:3142/debian sid/main amd64 libheif-plugin-dav1d amd64 1.17.6-1+b2 [9856 B] Get:122 http://localhost:3142/debian sid/main amd64 libde265-0 amd64 1.0.15-1+b1 [187 kB] Get:123 http://localhost:3142/debian sid/main amd64 libheif-plugin-libde265 amd64 1.17.6-1+b2 [13.1 kB] Get:124 http://localhost:3142/debian sid/main amd64 libheif1 amd64 1.17.6-1+b2 [284 kB] Get:125 http://localhost:3142/debian sid/main amd64 libdeflate0 amd64 1.20-1 [46.0 kB] Get:126 http://localhost:3142/debian sid/main amd64 libjbig0 amd64 2.1-6.1+b1 [32.0 kB] Get:127 http://localhost:3142/debian sid/main amd64 liblerc4 amd64 4.0.0+ds-4+b1 [171 kB] Get:128 http://localhost:3142/debian sid/main amd64 libwebp7 amd64 1.3.2-0.4+b1 [308 kB] Get:129 http://localhost:3142/debian sid/main amd64 libtiff6 amd64 4.5.1+git230720-4 [322 kB] Get:130 http://localhost:3142/debian sid/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:131 http://localhost:3142/debian sid/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:132 http://localhost:3142/debian sid/main amd64 libxcb1 amd64 1.17.0-1 [144 kB] Get:133 http://localhost:3142/debian sid/main amd64 libx11-data all 2:1.8.7-1 [328 kB] Get:134 http://localhost:3142/debian sid/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:135 http://localhost:3142/debian sid/main amd64 libxpm4 amd64 1:3.5.17-1+b1 [56.1 kB] Get:136 http://localhost:3142/debian sid/main amd64 libgd3 amd64 2.3.3-9+b3 [125 kB] Get:137 http://localhost:3142/debian sid/main amd64 libglib2.0-0t64 amd64 2.78.4-7 [1455 kB] Get:138 http://localhost:3142/debian sid/main amd64 libgts-0.7-5t64 amd64 0.7.6+darcs121130-5.2 [157 kB] Get:139 http://localhost:3142/debian sid/main amd64 libpixman-1-0 amd64 0.42.2-1+b1 [556 kB] Get:140 http://localhost:3142/debian sid/main amd64 libxcb-render0 amd64 1.17.0-1 [114 kB] Get:141 http://localhost:3142/debian sid/main amd64 libxcb-shm0 amd64 1.17.0-1 [105 kB] Get:142 http://localhost:3142/debian sid/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:143 http://localhost:3142/debian sid/main amd64 libxrender1 amd64 1:0.9.10-1.1 [33.2 kB] Get:144 http://localhost:3142/debian sid/main amd64 libcairo2 amd64 1.18.0-3+b1 [531 kB] Get:145 http://localhost:3142/debian sid/main amd64 libltdl7 amd64 2.4.7-7 [393 kB] Get:146 http://localhost:3142/debian sid/main amd64 libfribidi0 amd64 1.0.13-3+b1 [71.4 kB] Get:147 http://localhost:3142/debian sid/main amd64 libgraphite2-3 amd64 1.3.14-2 [74.9 kB] Get:148 http://localhost:3142/debian sid/main amd64 libharfbuzz0b amd64 8.3.0-2+b1 [2214 kB] Get:149 http://localhost:3142/debian sid/main amd64 libthai-data all 0.1.29-2 [168 kB] Get:150 http://localhost:3142/debian sid/main amd64 libdatrie1 amd64 0.2.13-3 [37.7 kB] Get:151 http://localhost:3142/debian sid/main amd64 libthai0 amd64 0.1.29-2 [49.1 kB] Get:152 http://localhost:3142/debian sid/main amd64 libpango-1.0-0 amd64 1.52.1+ds-1 [216 kB] Get:153 http://localhost:3142/debian sid/main amd64 libpangoft2-1.0-0 amd64 1.52.1+ds-1 [48.3 kB] Get:154 http://localhost:3142/debian sid/main amd64 libpangocairo-1.0-0 amd64 1.52.1+ds-1 [35.1 kB] Get:155 http://localhost:3142/debian sid/main amd64 libpathplan4 amd64 2.42.2-9+b1 [42.2 kB] Get:156 http://localhost:3142/debian sid/main amd64 libgvc6 amd64 2.42.2-9+b1 [682 kB] Get:157 http://localhost:3142/debian sid/main amd64 libgvpr2 amd64 2.42.2-9+b1 [189 kB] Get:158 http://localhost:3142/debian sid/main amd64 liblab-gamut1 amd64 2.42.2-9+b1 [198 kB] Get:159 http://localhost:3142/debian sid/main amd64 x11-common all 1:7.7+23 [252 kB] Get:160 http://localhost:3142/debian sid/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:161 http://localhost:3142/debian sid/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:162 http://localhost:3142/debian sid/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:163 http://localhost:3142/debian sid/main amd64 libxmu6 amd64 2:1.1.3-3+b2 [58.7 kB] Get:164 http://localhost:3142/debian sid/main amd64 libxaw7 amd64 2:1.0.14-1+b2 [199 kB] Get:165 http://localhost:3142/debian sid/main amd64 graphviz amd64 2.42.2-9+b1 [614 kB] Get:166 http://localhost:3142/debian sid/main amd64 libapache-pom-java all 29-2 [5276 B] Get:167 http://localhost:3142/debian sid/main armel libgcc-s1 armel 14-20240330-1 [38.7 kB] Get:168 http://localhost:3142/debian sid/main armel libc6 armel 2.37-18 [2138 kB] Get:169 http://localhost:3142/debian sid/main armel libasan8 armel 14-20240330-1 [2544 kB] Get:170 http://localhost:3142/debian sid/main armel libatomic1 armel 14-20240330-1 [9404 B] Get:171 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.36-4 [96.9 kB] Get:172 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.36-4 [126 kB] Get:173 http://localhost:3142/debian sid/main armel libc6-dev armel 2.37-18 [1297 kB] Get:174 http://localhost:3142/debian sid/main amd64 libcommons-parent-java all 56-1 [10.8 kB] Get:175 http://localhost:3142/debian sid/main amd64 libcommons-logging-java all 1.3.0-1 [68.6 kB] Get:176 http://localhost:3142/debian sid/main amd64 libfontbox-java all 1:1.8.16-5 [211 kB] Get:177 http://localhost:3142/debian sid/main armel libgomp1 armel 14-20240330-1 [112 kB] Get:178 http://localhost:3142/debian sid/main armel libstdc++6 armel 14-20240330-1 [594 kB] Get:179 http://localhost:3142/debian sid/main armel libubsan1 armel 14-20240330-1 [1033 kB] Get:180 http://localhost:3142/debian sid/main armel libgcc-13-dev armel 13.2.0-23 [770 kB] Get:181 http://localhost:3142/debian sid/main amd64 libkpathsea6 amd64 2023.20230311.66589-9+b2 [154 kB] Get:182 http://localhost:3142/debian sid/main amd64 libpaper1 amd64 1.1.29 [12.5 kB] Get:183 http://localhost:3142/debian sid/main amd64 libpaper-utils amd64 1.1.29 [8868 B] Get:184 http://localhost:3142/debian sid/main amd64 libpdfbox-java all 1:1.8.16-5 [5527 kB] Get:185 http://localhost:3142/debian sid/main amd64 libpotrace0 amd64 1.16-2+b1 [25.2 kB] Get:186 http://localhost:3142/debian sid/main amd64 libptexenc1 amd64 2023.20230311.66589-9+b2 [47.2 kB] Get:187 http://localhost:3142/debian sid/main armel librostlab3t64 armel 1.0.20-13.1 [5084 B] Get:188 http://localhost:3142/debian sid/main armel librostlab3-dev armel 1.0.20-13.1 [12.5 kB] Get:189 http://localhost:3142/debian sid/main armel libstdc++-13-dev armel 13.2.0-23 [2263 kB] Get:190 http://localhost:3142/debian sid/main amd64 libsynctex2 amd64 2023.20230311.66589-9+b2 [62.2 kB] Get:191 http://localhost:3142/debian sid/main amd64 libteckit0 amd64 2.5.12+ds1-1 [339 kB] Get:192 http://localhost:3142/debian sid/main amd64 libtexlua53-5 amd64 2023.20230311.66589-9+b2 [113 kB] Get:193 http://localhost:3142/debian sid/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:194 http://localhost:3142/debian sid/main amd64 libzzip-0-13t64 amd64 0.13.72+dfsg.1-1.2+b1 [56.2 kB] Get:195 http://localhost:3142/debian sid/main amd64 tex-common all 6.18 [32.5 kB] Get:196 http://localhost:3142/debian sid/main amd64 preview-latex-style all 13.2-1 [350 kB] Get:197 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:198 http://localhost:3142/debian sid/main amd64 texlive-binaries amd64 2023.20230311.66589-9+b2 [8495 kB] Get:199 http://localhost:3142/debian sid/main amd64 xdg-utils all 1.1.3-4.1 [75.5 kB] Get:200 http://localhost:3142/debian sid/main amd64 texlive-base all 2023.20240207-1 [22.0 MB] Get:201 http://localhost:3142/debian sid/main amd64 texlive-fonts-recommended all 2023.20240207-1 [4990 kB] Get:202 http://localhost:3142/debian sid/main amd64 texlive-latex-base all 2023.20240207-1 [1255 kB] Get:203 http://localhost:3142/debian sid/main amd64 texlive-latex-recommended all 2023.20240207-1 [8843 kB] Get:204 http://localhost:3142/debian sid/main amd64 texlive-pictures all 2023.20240207-1 [16.7 MB] Get:205 http://localhost:3142/debian sid/main amd64 texlive-latex-extra all 2023.20240207-1 [19.7 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 260 MB in 2s (143 MB/s) Selecting previously unselected package m4. (Reading database ... 12851 files and directories currently installed.) Preparing to unpack .../0-m4_1.4.19-4_amd64.deb ... Unpacking m4 (1.4.19-4) ... Selecting previously unselected package flex. Preparing to unpack .../1-flex_2.6.4-8.2+b2_amd64.deb ... Unpacking flex (2.6.4-8.2+b2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../2-liblocale-gettext-perl_1.07-7_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7) ... Selecting previously unselected package libpython3.11-minimal:amd64. Preparing to unpack .../3-libpython3.11-minimal_3.11.9-1_amd64.deb ... Unpacking libpython3.11-minimal:amd64 (3.11.9-1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../4-libexpat1_2.6.2-1_amd64.deb ... Unpacking libexpat1:amd64 (2.6.2-1) ... Selecting previously unselected package python3.11-minimal. Preparing to unpack .../5-python3.11-minimal_3.11.9-1_amd64.deb ... Unpacking python3.11-minimal (3.11.9-1) ... Setting up libpython3.11-minimal:amd64 (3.11.9-1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up python3.11-minimal (3.11.9-1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13364 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.11.8-1_amd64.deb ... Unpacking python3-minimal (3.11.8-1) ... Selecting previously unselected package media-types. Preparing to unpack .../1-media-types_10.1.0_all.deb ... Unpacking media-types (10.1.0) ... Selecting previously unselected package netbase. Preparing to unpack .../2-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../3-libncursesw6_6.4+20240414-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4+20240414-1) ... Selecting previously unselected package readline-common. Preparing to unpack .../4-readline-common_8.2-4_all.deb ... Unpacking readline-common (8.2-4) ... Selecting previously unselected package libreadline8t64:amd64. Preparing to unpack .../5-libreadline8t64_8.2-4_amd64.deb ... Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.3-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.3-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. Preparing to unpack .../8-python3.11_3.11.9-1_amd64.deb ... Unpacking python3.11 (3.11.9-1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../9-libpython3-stdlib_3.11.8-1_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3-minimal (3.11.8-1) ... Selecting previously unselected package python3. (Reading database ... 13845 files and directories currently installed.) Preparing to unpack .../000-python3_3.11.8-1_amd64.deb ... Unpacking python3 (3.11.8-1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.45-3_amd64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... Selecting previously unselected package libmagic1t64:amd64. Preparing to unpack .../003-libmagic1t64_1%3a5.45-3_amd64.deb ... Unpacking libmagic1t64:amd64 (1:5.45-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.45-3_amd64.deb ... Unpacking file (1:5.45-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-14+b1_amd64.deb ... Unpacking gettext-base (0.21-14+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../006-libuchardet0_0.0.8-1+b1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.8-1+b1) ... Selecting previously unselected package groff-base. Preparing to unpack .../007-groff-base_1.23.0-3+b1_amd64.deb ... Unpacking groff-base (1.23.0-3+b1) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../008-bsdextrautils_2.40-7_amd64.deb ... Unpacking bsdextrautils (2.40-7) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../009-libpipeline1_1.5.7-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-2) ... Selecting previously unselected package man-db. Preparing to unpack .../010-man-db_2.12.1-1_amd64.deb ... Unpacking man-db (2.12.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../011-ucf_3.0043+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0043+nmu1) ... Selecting previously unselected package autoconf. Preparing to unpack .../012-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../013-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../014-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. 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Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up media-types (10.1.0) ... Setting up libpipeline1:amd64 (1.5.7-2) ... Setting up libgraphite2-3:amd64 (1.3.14-2) ... Setting up libpixman-1-0:amd64 (0.42.2-1+b1) ... Setting up libxapian30:amd64 (1.4.25-1) ... Setting up libsharpyuv0:amd64 (1.3.2-0.4+b1) ... Setting up libaom3:amd64 (3.8.2-2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up binutils-arm-linux-gnueabi (2.42-4) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up liblerc4:amd64 (4.0.0+ds-4+b1) ... Setting up bsdextrautils (2.40-7) ... Setting up libdatrie1:amd64 (0.2.13-3) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up librostlab3t64:armel (1.0.20-13.1) ... Setting up gcc-14-base:armel (14-20240330-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.15.3) ... Setting up libbrotli1:amd64 (1.1.0-2+b3) ... Setting up libfontbox-java (1:1.8.16-5) ... 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Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up flex (2.6.4-8.2+b2) ... Setting up libxcb1:amd64 (1.17.0-1) ... Setting up gettext (0.21-14+b1) ... Setting up libpdfbox-java (1:1.8.16-5) ... Setting up cpp-13-arm-linux-gnueabi (13.2.0-13cross1) ... Setting up libgomp1-armel-cross (14-20240201-3cross2) ... Setting up libtool (2.4.7-7) ... Setting up libxcb-render0:amd64 (1.17.0-1) ... Setting up fontconfig-config (2.15.0-1.1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up libgcc-s1-armel-cross (14-20240201-3cross2) ... Setting up libcommons-parent-java (56-1) ... Setting up libcommons-logging-java (1.3.0-1) ... Setting up libxcb-shm0:amd64 (1.17.0-1) ... Setting up libstdc++6-armel-cross (14-20240201-3cross2) ... Setting up libatomic1-armel-cross (14-20240201-3cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libllvm16t64:amd64 (1:16.0.6-25) ... Setting up dh-autoreconf (20) ... Setting up libthai0:amd64 (0.1.29-2) ... Setting up cpp-arm-linux-gnueabi (4:13.2.1-6) ... Setting up libptexenc1:amd64 (2023.20230311.66589-9+b2) ... Setting up libfreetype6:amd64 (2.13.2+dfsg-1+b4) ... Setting up libubsan1-armel-cross (14-20240201-3cross2) ... Setting up libgav1-1:amd64 (0.19.0-2) ... Setting up ucf (3.0043+nmu1) ... Setting up libreadline8t64:amd64 (8.2-4) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up libgvpr2:amd64 (2.42.2-9+b1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libharfbuzz0b:amd64 (8.3.0-2+b1) ... Setting up libfontconfig1:amd64 (2.15.0-1.1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libpaper1:amd64 (1.1.29) ... Creating config file /etc/papersize with new version Setting up fontconfig (2.15.0-1.1) ... Regenerating fonts cache... done. Setting up libavif16:amd64 (1.0.4-2) ... Setting up libasan8-armel-cross (14-20240201-3cross2) ... Setting up libxpm4:amd64 (1:3.5.17-1+b1) ... Setting up libxrender1:amd64 (1:0.9.10-1.1) ... Setting up libgcc-13-dev-armel-cross (13.2.0-13cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpython3.11-stdlib:amd64 (3.11.9-1) ... Setting up libpango-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up gcc-13-arm-linux-gnueabi (13.2.0-13cross1) ... Setting up libpaper-utils (1.1.29) ... Setting up libclang1-16t64 (1:16.0.6-25) ... Setting up man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libclang-cpp16t64 (1:16.0.6-25) ... Setting up libcairo2:amd64 (1.18.0-3+b1) ... Setting up tex-common (6.18) ... update-language: texlive-base not installed and configured, doing nothing! Setting up doxygen (1.9.8+ds-2+b1) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libstdc++-13-dev-armel-cross (13.2.0-13cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:13.2.1-6) ... Setting up libpangoft2-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libpangocairo-1.0-0:amd64 (1.52.1+ds-1) ... Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libxmu6:amd64 (2:1.1.3-3+b2) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up g++-13-arm-linux-gnueabi (13.2.0-13cross1) ... Setting up preview-latex-style (13.2-1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up libxaw7:amd64 (2:1.0.14-1+b2) ... Setting up g++-arm-linux-gnueabi (4:13.2.1-6) ... Setting up libxml-simple-perl (2.25-2) ... Setting up texlive-binaries (2023.20230311.66589-9+b2) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up texlive-base (2023.20240207-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/tex-ini-files/pdftexconfig.tex Setting up libconfig-auto-perl (0.44-2) ... Setting up texlive-latex-base (2023.20240207-1) ... Setting up texlive-latex-recommended (2023.20240207-1) ... Setting up texlive-pictures (2023.20240207-1) ... Setting up texlive-fonts-recommended (2023.20240207-1) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up texlive-latex-extra (2023.20240207-1) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-armel (12.10) ... Setting up libgcc-s1:armel (14-20240330-1) ... Setting up libc6:armel (2.37-18) ... Setting up libasan8:armel (14-20240330-1) ... Setting up libheif-plugin-dav1d:amd64 (1.17.6-1+b2) ... Setting up libstdc++6:armel (14-20240330-1) ... Setting up libheif-plugin-libde265:amd64 (1.17.6-1+b2) ... Setting up libheif1:amd64 (1.17.6-1+b2) ... Setting up libcrypt1:armel (1:4.4.36-4) ... Setting up libgomp1:armel (14-20240330-1) ... Setting up libgd3:amd64 (2.3.3-9+b3) ... Setting up libgvc6 (2.42.2-9+b1) ... Setting up libatomic1:armel (14-20240330-1) ... Setting up libubsan1:armel (14-20240330-1) ... Setting up libgcc-13-dev:armel (13.2.0-23) ... Setting up libcrypt-dev:armel (1:4.4.36-4) ... Setting up libc6-dev:armel (2.37-18) ... Setting up libstdc++-13-dev:armel (13.2.0-23) ... Setting up graphviz (2.42.2-9+b1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for tex-common (6.18) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-20-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.85-1 (2024-04-11) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-18 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-armel-cross_13.2.0-13cross1 libstdc++6_14-20240330-1 libstdc++6-armel-cross_14-20240201-3cross2 linux-libc-dev_6.7.12-1 Package versions: adduser_3.137 apt_2.9.2 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13.1 base-passwd_3.6.3 bash_5.2.21-2 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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: librostlab-blast Binary: librostlab-blast0v5, librostlab-blast0-dev, librostlab-blast-doc Architecture: any all Version: 1.0.1-14 Maintainer: Debian Med Packaging Team Uploaders: Laszlo Kajan , Andreas Tille , Étienne Mollier Homepage: https://rostlab.org/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/librostlab-blast Vcs-Git: https://salsa.debian.org/med-team/librostlab-blast.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, bison, doxygen, flex, graphviz, texlive-latex-recommended, librostlab-dev, texlive-fonts-recommended, texlive-latex-extra Package-List: librostlab-blast-doc deb doc optional arch=all librostlab-blast0-dev deb libdevel optional arch=any librostlab-blast0v5 deb libs optional arch=any Checksums-Sha1: 5b5cff416807dae2daad3d17540c7fa70bb8bc70 384023 librostlab-blast_1.0.1.orig.tar.gz 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MiFPeWBURdNVFj/1+yhPoAN9I2M+hXsWk+HpHyXEwa+cAlVTRLsJIGDSOxom6iCq BaRZHfiHUghtFMOOZ1H9nnOox48Mcap6TG20dxp+RUaAClxwv7Hopq/A0S4dxh/S TXdhBFEha5RbnicsLTIf3Y8+nSTcpe6b09mvfws3Cf1+LJbPmxDHcBkWr+82JUVy q2hG3Lp5en+EtOkn9pB6RzALLVRPwYnLS7QKcxUlFjx4GTgANZfzgf4xmWS/4RLi fi/dpSsN2W2qy6ZVAMGDJA3dyagPAHTH3ZIF1WdcSXTL1UQYra4laca78tO1UxC/ o0oqrjCyllJw2KTGtjnTAr9omNKXRw65u/0GldsjS2M9LJWGD3erCR6hVs55QFuP FVxbVyDGfhlKC6ZLzX7D5dKpyayhYTlfBkWrS5KsNKRtMwO3Q47syVr8Xlr2cfb4 zjpaLJkIM/noe8A= =YAd2 -----END PGP SIGNATURE----- gpgv: Signature made Wed Apr 24 11:20:29 2024 UTC gpgv: using RSA key 8F91B227C7D6F2B1948C8236793CF67E8F0D11DA gpgv: issuer "emollier@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./librostlab-blast_1.0.1-14.dsc: no acceptable signature found dpkg-source: info: extracting librostlab-blast in /<> dpkg-source: info: unpacking librostlab-blast_1.0.1.orig.tar.gz dpkg-source: info: unpacking librostlab-blast_1.0.1-14.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying reproducible.patch dpkg-source: info: applying modernize_c++.patch dpkg-source: info: applying gcc-12.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.DCF3zUnIZU/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-6f316c53-24c2-4976-bbfe-8d4da2a65134 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package librostlab-blast dpkg-buildpackage: info: source version 1.0.1-14 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Étienne Mollier dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean rm -f lib/librostlab-blast.tag make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead cp: warning: behavior of -n is non-portable and may change in future; use --update=none instead dh_autoreconf -a libtoolize: putting auxiliary files in '.'. libtoolize: copying file './ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'm4'. libtoolize: copying file 'm4/libtool.m4' libtoolize: copying file 'm4/ltoptions.m4' libtoolize: copying file 'm4/ltsugar.m4' libtoolize: copying file 'm4/ltversion.m4' libtoolize: copying file 'm4/lt~obsolete.m4' configure.ac:9: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:9: You should run autoupdate. m4/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:9: the top level configure.ac:11: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:11: the top level configure.ac:7: installing './compile' configure.ac:5: installing './missing' lib/Makefile.am: installing './depcomp' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --enable-doxygen-dot --enable-doxygen-pdf=No ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi --enable-doxygen-dot --enable-doxygen-pdf=No configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to enable C11 features... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of arm-linux-gnueabi-gcc... none checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed checking dependency style of arm-linux-gnueabi-g++... none checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking how to print strings... printf checking for a sed that does not truncate output... /usr/bin/sed checking for grep that handles long lines and -e... /usr/bin/grep checking for egrep... /usr/bin/grep -E checking for fgrep... /usr/bin/grep -F checking for ld used by arm-linux-gnueabi-gcc... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabi-nm -B checking the name lister (/usr/bin/arm-linux-gnueabi-nm -B) interface... BSD nm checking whether ln -s works... yes checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabi format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabi/bin/ld option to reload object files... -r checking for arm-linux-gnueabi-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for arm-linux-gnueabi-objdump... arm-linux-gnueabi-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabi-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabi-strip... (cached) arm-linux-gnueabi-strip checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking command to parse /usr/bin/arm-linux-gnueabi-nm -B output from arm-linux-gnueabi-gcc object... ok checking for sysroot... no checking for a working dd... /usr/bin/dd checking how to truncate binary pipes... /usr/bin/dd bs=4096 count=1 checking for arm-linux-gnueabi-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabi-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabi-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-gcc static flag -static works... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-gcc linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking how to run the C++ preprocessor... arm-linux-gnueabi-g++ -E checking for ld used by arm-linux-gnueabi-g++... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabi-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-g++ static flag -static works... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking for bison... bison -y checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for rostlab/aux_functions.h... yes checking for rostlab/rostlab_stdexcept.h... yes checking for arm-linux-gnueabi-doxygen... no checking for doxygen... /usr/bin/doxygen checking for arm-linux-gnueabi-perl... no checking for perl... /usr/bin/perl checking for arm-linux-gnueabi-dot... no checking for dot... /usr/bin/dot checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating lib/Makefile config.status: creating lib/Doxyfile config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in lib make[4]: Entering directory '/<>/lib' mkdir -p rostlab /bin/bash ../ylwrap blast-parser-parser.ypp y.tab.c blast-parser-parser.cpp y.tab.h rostlab/blast-parser-parser.h y.output blast-parser-parser.output stack.hh rostlab/blast-parser-stack.h location.hh rostlab/blast-parser-location.h position.hh rostlab/blast-parser-position.h -- bison -y /<>/lib/blast-parser-parser.ypp:1.1-9: warning: POSIX Yacc does not support %skeleton [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:1.11-20: warning: POSIX Yacc does not support string literals [-Wyacc] 1 | %skeleton "lalr1.cc" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:20.1-8: warning: POSIX Yacc does not support %require [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:20.10-16: warning: POSIX Yacc does not support string literals [-Wyacc] 20 | %require "2.4.1" | ^~~~~~~ /<>/lib/blast-parser-parser.ypp:21.1-8: warning: POSIX Yacc does not support %defines [-Wyacc] 21 | %defines | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-7: warning: POSIX Yacc does not support %define [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~ /<>/lib/blast-parser-parser.ypp:22.19-34: warning: POSIX Yacc does not support string literals [-Wyacc] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-34: warning: deprecated directive: ‘%define namespace "rostlab::blast"’, use ‘%define api.namespace {rostlab::blast}’ [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ | %define api.namespace {rostlab::blast} /<>/lib/blast-parser-parser.ypp:24.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 24 | %code requires { | ^~~~~ /<>/lib/blast-parser-parser.ypp:37.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 37 | %error-verbose | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:37.1-14: warning: deprecated directive: ‘%error-verbose’, use ‘%define parse.error verbose’ [-Wdeprecated] 37 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /<>/lib/blast-parser-parser.ypp:39.1-15: warning: POSIX Yacc does not support %initial-action [-Wyacc] 39 | %initial-action | ^~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:53.1-5: warning: POSIX Yacc does not support %code [-Wyacc] 53 | %code { | ^~~~~ /<>/lib/blast-parser-parser.ypp:59.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 59 | %token END 0 "end of file" | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:72.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 72 | %token QUERYEQ "Query=" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:73.29-39: warning: POSIX Yacc does not support string literals [-Wyacc] 73 | %token DATABASECOLON "Database:" | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:74.29-48: warning: POSIX Yacc does not support string literals [-Wyacc] 74 | %token RESFROMROUND "Results from round" | ^~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:75.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 75 | %token SCOREEQ "Score =" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:76.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 76 | %token EXPECTEQ "Expect =" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:77.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 77 | %token METHODCOLON "Method:" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:78.29-42: warning: POSIX Yacc does not support string literals [-Wyacc] 78 | %token IDENTITIESEQ "Identities =" | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:79.29-41: warning: POSIX Yacc does not support string literals [-Wyacc] 79 | %token POSITIVESEQ "Positives =" | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:80.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 80 | %token GAPSEQ "Gaps =" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:81.29-38: warning: POSIX Yacc does not support string literals [-Wyacc] 81 | %token STRANDEQ "Strand =" | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:82.29-37: warning: POSIX Yacc does not support string literals [-Wyacc] 82 | %token FRAMEEQ "Frame =" | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:83.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 83 | %token QUERYCOLON "Query:" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:84.29-36: warning: POSIX Yacc does not support string literals [-Wyacc] 84 | %token SBJCTCOLON "Sbjct:" | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:88.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 88 | %destructor { delete $$; } | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:90.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 90 | %printer { debug_stream () << *$$; } | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:91.1-8: warning: POSIX Yacc does not support %printer [-Wyacc] 91 | %printer { debug_stream () << $$; } | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:109.9-16: warning: POSIX Yacc does not support string literals [-Wyacc] 109 | query: "Query=" STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:122.11-21: warning: POSIX Yacc does not support string literals [-Wyacc] 122 | database: "Database:" STRING INT INT | ^~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:137.15-34: warning: POSIX Yacc does not support string literals [-Wyacc] 137 | | "Results from round" INT | ^~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:201.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 201 | hsp_headerfield: "Score =" num INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:203.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 203 | | "Expect =" num | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:205.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 205 | | "Method:" STRING | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:207.19-32: warning: POSIX Yacc does not support string literals [-Wyacc] 207 | | "Identities =" INT | ^~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:209.19-31: warning: POSIX Yacc does not support string literals [-Wyacc] 209 | | "Positives =" INT | ^~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:211.19-26: warning: POSIX Yacc does not support string literals [-Wyacc] 211 | | "Gaps =" INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:213.19-28: warning: POSIX Yacc does not support string literals [-Wyacc] 213 | | "Strand =" STRING '/' STRING | ^~~~~~~~~~ /<>/lib/blast-parser-parser.ypp:215.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 215 | | "Frame =" INT '/' INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:217.19-27: warning: POSIX Yacc does not support string literals [-Wyacc] 217 | | "Frame =" INT | ^~~~~~~~~ /<>/lib/blast-parser-parser.ypp:224.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:224.46-53: warning: POSIX Yacc does not support string literals [-Wyacc] 224 | alitriple: "Query:" INT STRING INT STRING "Sbjct:" INT STRING INT | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:247.15-22: warning: POSIX Yacc does not support string literals [-Wyacc] 247 | | "Query:" '0' /* bug as far as I can tell */ | ^~~~~~~~ /<>/lib/blast-parser-parser.ypp:22.1-34: warning: %define variable 'api.namespace' requires '{...}' values [-Wdeprecated] 22 | %define namespace "rostlab::blast" | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/lib/blast-parser-parser.ypp: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating rostlab/blast-parser-location.h updating rostlab/blast-parser-position.h updating rostlab/blast-parser-stack.h updating rostlab/blast-parser-parser.h sed -i -e 's,\by.tab.h\b,rostlab/blast-parser-parser.h,g' blast-parser-parser.cpp sed -i -e 's,\bstack.hh\b,rostlab/blast-parser-stack.h,g;s,\blocation.hh\b,rostlab/blast-parser-location.h,g;' rostlab/blast-parser-parser.h sed -i -e 's,\bposition.hh\b,rostlab/blast-parser-position.h,g;' rostlab/blast-parser-location.h /bin/bash ../ylwrap blast-parser-scanner.lpp lex.yy.c blast-parser-scanner.cpp -- flex make all-am make[5]: Entering directory '/<>/lib' /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-driver.lo `test -f 'blast-parser-driver.cpp' || echo './'`blast-parser-driver.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blast-parser-driver.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-driver.o In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:65, from ./rostlab/blast-result.h:24, from blast-parser-parser.ypp:26, from rostlab/blast-parser-driver.h:26, from blast-parser-driver.cpp:19: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1619:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:238:44: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘rostlab::blast::hit::hit(const rostlab::blast::hit&)’ at ./rostlab/blast-result.h:140:8, inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = rostlab::blast::hit; _Args = {const rostlab::blast::hit&}]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hit*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hit*; bool _TrivialValueTypes = false]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hit*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hit*; _Tp = rostlab::blast::hit]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::pointer std::vector<_Tp, _Alloc>::_M_allocate_and_copy(size_type, _ForwardIterator, _ForwardIterator) [with _ForwardIterator = __gnu_cxx::__normal_iterator >; _Tp = rostlab::blast::hit; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1619:35, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hit; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:238:44, inlined from ‘rostlab::blast::result& rostlab::blast::result::operator=(const rostlab::blast::result&)’ at ./rostlab/blast-result.h:164:8, inlined from ‘const rostlab::blast::parser_driver::result_type& rostlab::blast::parser_driver::parse(bool, bool)’ at blast-parser-driver.cpp:29:25: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = __gnu_cxx::__normal_iterator >; _ForwardIterator = rostlab::blast::hsp*; _Tp = rostlab::blast::hsp]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>::vector(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:603:31, inlined from ‘rostlab::blast::hit::hit(const rostlab::blast::hit&)’ at ./rostlab/blast-result.h:140:8, inlined from ‘void std::_Construct(_Tp*, _Args&& ...) [with _Tp = rostlab::blast::hit; _Args = {rostlab::blast::hit&}]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_construct.h:119:7, inlined from ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:120:21, inlined from ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*; bool _TrivialValueTypes = false]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:32, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = rostlab::blast::hit*; _ForwardIterator = rostlab::blast::hit*; _Tp = rostlab::blast::hit]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘std::vector<_Tp, _Alloc>& std::vector<_Tp, _Alloc>::operator=(const std::vector<_Tp, _Alloc>&) [with _Tp = rostlab::blast::hit; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:257:35, inlined from ‘rostlab::blast::result& rostlab::blast::result::operator=(const rostlab::blast::result&)’ at ./rostlab/blast-result.h:164:8, inlined from ‘const rostlab::blast::parser_driver::result_type& rostlab::blast::parser_driver::parse(bool, bool)’ at blast-parser-driver.cpp:29:25: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blast-parser-driver.cpp -o librostlab_blast_la-blast-parser-driver.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o librostlab_blast_la-blast-parser-parser.lo `test -f 'blast-parser-parser.cpp' || echo './'`blast-parser-parser.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blast-parser-parser.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-blast-parser-parser.o In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:72, from ./rostlab/blast-result.h:24, from blast-parser-parser.ypp:26, from blast-parser-parser.cpp:41: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const rostlab::blast::oneline&}; _Tp = rostlab::blast::oneline; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::hsp}; _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:65: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h: In function ‘_ForwardIterator std::__do_uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 113 | __do_uninit_copy(_InputIterator __first, _InputIterator __last, | ^~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:113:5: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:445:7: note: parameter passing for argument of type ‘std::vector >::iterator’ changed in GCC 7.1 445 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Tp = rostlab::blast::parser::stack_symbol_type]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = rostlab::blast::parser::stack_symbol_type*; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Allocator = allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:399:2, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:493:3: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In static member function ‘static _ForwardIterator std::__uninitialized_copy<_TrivialValueTypes>::__uninit_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = std::move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; bool _TrivialValueTypes = false]’, inlined from ‘_ForwardIterator std::uninitialized_copy(_InputIterator, _InputIterator, _ForwardIterator) [with _InputIterator = move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:185:15, inlined from ‘_ForwardIterator std::__uninitialized_copy_a(_InputIterator, _InputIterator, _ForwardIterator, allocator<_Tp>&) [with _InputIterator = move_iterator; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Tp = rostlab::blast::parser::stack_symbol_type]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:373:37, inlined from ‘_ForwardIterator std::__uninitialized_move_if_noexcept_a(_InputIterator, _InputIterator, _ForwardIterator, _Allocator&) [with _InputIterator = rostlab::blast::parser::stack_symbol_type*; _ForwardIterator = rostlab::blast::parser::stack_symbol_type*; _Allocator = allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:399:2, inlined from ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:500:3: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_uninitialized.h:137:39: note: parameter passing for argument of type ‘std::move_iterator’ changed in GCC 7.1 137 | { return std::__do_uninit_copy(__first, __last, __result); } | ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {rostlab::blast::parser::stack_symbol_type}; _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = rostlab::blast::parser::stack_symbol_type; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘void rostlab::blast::parser::stack::push(T&&) [with T = rostlab::blast::parser::stack_symbol_type; S = std::vector >]’ at rostlab/blast-parser-parser.h:761:24, inlined from ‘void rostlab::blast::parser::yypush_(const char*, stack_symbol_type&&)’ at blast-parser-parser.cpp:443:19: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator > >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/13/vector:66: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = rostlab::blast::oneline; _Alloc = std::allocator]’, inlined from ‘virtual int rostlab::blast::parser::parse()’ at blast-parser-parser.ypp:160:33: /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1289:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1289 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {rostlab::blast::hsp}; _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = rostlab::blast::hsp; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/13/bits/stl_vector.h:1296:21, inlined from ‘virtual int rostlab::blast::parser::parse()’ at blast-parser-parser.ypp:202:69: /usr/arm-linux-gnueabi/include/c++/13/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c blast-parser-parser.cpp -o librostlab_blast_la-blast-parser-parser.o >/dev/null 2>&1 \ \ /bin/bash ../ylwrap `test -f 'blast-parser-scanner.lpp' || echo './'`blast-parser-scanner.lpp lex.yy.c librostlab_blast_la-blast-parser-scanner.cpp -- flex -Cfe /bin/bash ../libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo `test -f 'librostlab_blast_la-blast-parser-scanner.cpp' || echo './'`librostlab_blast_la-blast-parser-scanner.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -fPIC -DPIC -o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I.. -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -c librostlab_blast_la-blast-parser-scanner.cpp -o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o >/dev/null 2>&1 /bin/bash ../libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -Wall -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -version-info 0:0:0 -Wall -Wl,-z,relro -Wl,-z,now -o librostlab-blast.la -rpath /usr/lib/arm-linux-gnueabi librostlab_blast_la-blast-parser-driver.lo librostlab_blast_la-blast-parser-parser.lo librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.lo libtool: link: arm-linux-gnueabi-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabi/13/../../../../arm-linux-gnueabi/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabi/13/crtbeginS.o .libs/librostlab_blast_la-blast-parser-driver.o .libs/librostlab_blast_la-blast-parser-parser.o .libs/librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o -L/usr/lib/gcc-cross/arm-linux-gnueabi/13 -L/usr/lib/gcc-cross/arm-linux-gnueabi/13/../../../../arm-linux-gnueabi/lib -L/lib/arm-linux-gnueabi -L/usr/lib/arm-linux-gnueabi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabi/13/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabi/13/../../../../arm-linux-gnueabi/lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,librostlab-blast.so.0 -o .libs/librostlab-blast.so.0.0.0 libtool: link: (cd ".libs" && rm -f "librostlab-blast.so.0" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so.0") libtool: link: (cd ".libs" && rm -f "librostlab-blast.so" && ln -s "librostlab-blast.so.0.0.0" "librostlab-blast.so") libtool: link: arm-linux-gnueabi-ar cr .libs/librostlab-blast.a librostlab_blast_la-blast-parser-driver.o librostlab_blast_la-blast-parser-parser.o librostlab_blast_la-librostlab_blast_la-blast-parser-scanner.o libtool: link: arm-linux-gnueabi-ranlib .libs/librostlab-blast.a libtool: link: ( cd ".libs" && rm -f "librostlab-blast.la" && ln -s "../librostlab-blast.la" "librostlab-blast.la" ) make[5]: Leaving directory '/<>/lib' make[4]: Leaving directory '/<>/lib' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' /usr/bin/make -C lib doxygen-doc make[2]: Entering directory '/<>/lib' rm -rf ../doxygen-doc SRCDIR='.' PROJECT='librostlab-blast' DOCDIR='../doxygen-doc' VERSION='1.0.1' PERL_PATH='/usr/bin/perl' HAVE_DOT='YES' DOT_PATH='/usr/bin' GENERATE_MAN='NO' GENERATE_RTF='NO' GENERATE_XML='NO' GENERATE_HTMLHELP='NO' GENERATE_CHI='NO' GENERATE_HTML='YES' GENERATE_LATEX='NO' /usr/bin/doxygen ./Doxyfile warning: Tag 'SYMBOL_CACHE_SIZE' at line 290 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'SHOW_DIRECTORIES' at line 490 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'COLS_IN_ALPHA_INDEX' at line 761 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_TIMESTAMP' at line 841 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'HTML_ALIGN_MEMBERS' at line 847 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'USE_INLINE_TREES' at line 1032 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'FORMULA_TRANSPARENT' at line 1059 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'LATEX_SOURCE_CODE' at line 1165 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_SCHEMA' at line 1257 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'XML_DTD' at line 1263 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'PERL_PATH' at line 1428 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'CLASS_DIAGRAMS' at line 1441 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'MSCGEN_PATH' at line 1450 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTNAME' at line 1482 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_FONTSIZE' at line 1487 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: Tag 'DOT_TRANSPARENT' at line 1611 of file './Doxyfile' has become obsolete. To avoid this warning please remove this line from your configuration file or upgrade it using "doxygen -u" warning: argument 'a4wide' for option PAPER_TYPE is not a valid enum value Using the default: a4! warning: doxygen no longer ships with the FreeSans font. You may want to clear or change DOT_FONTNAME. Otherwise you run the risk that the wrong font is being used for dot generated graphs. error: Tag file '/usr/share/doc/librostlab-doc/librostlab.tag' does not exist or is not a file. Skipping it... /<>/lib/rostlab/blast-parser-location.h:34: warning: the name 'location.hh' supplied as the argument in the \file statement is not an input file /<>/lib/rostlab/blast-parser-parser.h:35: warning: the name 'y.tab.h' supplied as the argument in the \file statement is not an input file Doxygen version used: 1.9.8 Notice: Output directory '../doxygen-doc' does not exist. I have created it for you. Searching for include files... Searching for example files... Searching for files in directory /<>/examples Searching for images... Searching for dot files... Searching for msc files... Searching for dia files... Searching for files to exclude Searching INPUT for files to process... Searching for files in directory /<>/lib/rostlab Reading and parsing tag files Parsing files Preprocessing /<>/lib/rostlab/blast-parser-driver.h... Parsing file /<>/lib/rostlab/blast-parser-driver.h... Preprocessing /<>/lib/rostlab/blast-parser-location.h... Parsing file /<>/lib/rostlab/blast-parser-location.h... Preprocessing /<>/lib/rostlab/blast-parser-parser.h... Parsing file /<>/lib/rostlab/blast-parser-parser.h... Preprocessing /<>/lib/rostlab/blast-parser-position.h... Parsing file /<>/lib/rostlab/blast-parser-position.h... Preprocessing /<>/lib/rostlab/blast-parser-stack.h... Parsing file /<>/lib/rostlab/blast-parser-stack.h... Preprocessing /<>/lib/rostlab/blast-result.h... Parsing file /<>/lib/rostlab/blast-result.h... Building macro definition list... Building group list... Building directory list... Building namespace list... Building file list... Building class list... Building concept list... Computing nesting relations for classes... Associating documentation with classes... Associating documentation with concepts... Associating documentation with modules... Building example list... Searching for enumerations... Searching for documented typedefs... Searching for members imported via using declarations... Searching for included using directives... Searching for documented variables... Building interface member list... Building member list... Searching for friends... Searching for documented defines... Computing class inheritance relations... Computing class usage relations... Flushing cached template relations that have become invalid... Computing class relations... Add enum values to enums... Searching for member function documentation... Creating members for template instances... Building page list... Search for main page... Computing page relations... Determining the scope of groups... Computing module relations... Sorting lists... Determining which enums are documented Computing member relations... Building full member lists recursively... Adding members to member groups. Computing member references... Inheriting documentation... Generating disk names... Adding source references... Adding xrefitems... Sorting member lists... Setting anonymous enum type... Computing dependencies between directories... Generating citations page... Counting members... Counting data structures... Resolving user defined references... Finding anchors and sections in the documentation... Transferring function references... Combining using relations... Adding members to index pages... Correcting members for VHDL... Computing tooltip texts... Generating style sheet... Generating search indices... Generating example documentation... Generating file sources... Generating code for file rostlab/blast-parser-driver.h... Generating code for file rostlab/blast-parser-location.h... Generating code for file rostlab/blast-parser-parser.h... Generating code for file rostlab/blast-parser-position.h... Generating code for file rostlab/blast-parser-stack.h... Generating code for file rostlab/blast-result.h... Generating file documentation... Generating docs for file rostlab/blast-parser-driver.h... Generating docs for file rostlab/blast-parser-location.h... Generating docs for file rostlab/blast-parser-parser.h... Generating docs for file rostlab/blast-parser-position.h... Generating docs for file rostlab/blast-parser-stack.h... Generating docs for file rostlab/blast-result.h... Generating page documentation... Generating group documentation... Generating class documentation... Generating concept documentation... Generating module documentation... Generating namespace documentation... Generating docs for namespace rostlab Generating docs for namespace rostlab::blast Generating docs for compound rostlab::blast::hit... Generating docs for compound rostlab::blast::hsp... Generating docs for compound rostlab::blast::location... Generating docs for compound rostlab::blast::oneline... Generating docs for compound rostlab::blast::parser... Generating docs for nested compound rostlab::blast::parser::basic_symbol... Generating docs for nested compound rostlab::blast::parser::by_kind... Generating docs for nested compound rostlab::blast::parser::context... Generating docs for nested compound rostlab::blast::parser::stack::slice... Generating docs for nested compound rostlab::blast::parser::symbol_kind... Generating docs for nested compound rostlab::blast::parser::symbol_type... Generating docs for nested compound rostlab::blast::parser::syntax_error... Generating docs for nested compound rostlab::blast::parser::token... Generating docs for nested compound rostlab::blast::parser::value_type... Generating docs for compound rostlab::blast::parser_driver... Generating docs for compound rostlab::blast::parser_error... Generating docs for compound rostlab::blast::position... Generating docs for compound rostlab::blast::result... Generating docs for compound rostlab::blast::round... Generating graph info page... Generating directory documentation... Generating index page... Generating page index... Generating topic index... Generating module index... Generating module member index... Generating namespace index... Generating namespace member index... Generating concept index... Generating annotated compound index... Generating alphabetical compound index... Generating hierarchical class index... Generating graphical class hierarchy... Generating member index... Generating file index... Generating file member index... Generating example index... finalizing index lists... writing tag file... Running plantuml with JAVA... Running dot... Generating dot graphs using 17 parallel threads... Running dot for graph 1/56 Running dot for graph 2/56 Running dot for graph 3/56 Running dot for graph 4/56 Running dot for graph 5/56 Running dot for graph 6/56 Running dot for graph 7/56 Running dot for graph 8/56 Running dot for graph 9/56 Running dot for graph 10/56 Running dot for graph 11/56 Running dot for graph 12/56 Running dot for graph 13/56 Running dot for graph 14/56 Running dot for graph 15/56 Running dot for graph 16/56 Running dot for graph 17/56 Running dot for graph 18/56 Running dot for graph 19/56 Running dot for graph 20/56 Running dot for graph 21/56 Running dot for graph 22/56 Running dot for graph 23/56 Running dot for graph 24/56 Running dot for graph 25/56 Running dot for graph 26/56 Running dot for graph 27/56 Running dot for graph 28/56 Running dot for graph 29/56 Running dot for graph 30/56 Running dot for graph 31/56 Running dot for graph 32/56 Running dot for graph 33/56 Running dot for graph 34/56 Running dot for graph 35/56 Running dot for graph 36/56 Running dot for graph 37/56 Running dot for graph 38/56 Running dot for graph 39/56 Running dot for graph 40/56 Running dot for graph 41/56 Running dot for graph 42/56 Running dot for graph 43/56 Running dot for graph 44/56 Running dot for graph 45/56 Running dot for graph 46/56 Running dot for graph 47/56 Running dot for graph 48/56 Running dot for graph 49/56 Running dot for graph 50/56 Running dot for graph 51/56 Running dot for graph 52/56 Running dot for graph 53/56 Running dot for graph 54/56 Running dot for graph 55/56 Running dot for graph 56/56 Patching output file 1/23 Patching output file 2/23 Patching output file 3/23 Patching output file 4/23 Patching output file 5/23 Patching output file 6/23 Patching output file 7/23 Patching output file 8/23 Patching output file 9/23 Patching output file 10/23 Patching output file 11/23 Patching output file 12/23 Patching output file 13/23 Patching output file 14/23 Patching output file 15/23 Patching output file 16/23 Patching output file 17/23 Patching output file 18/23 Patching output file 19/23 Patching output file 20/23 Patching output file 21/23 Patching output file 22/23 Patching output file 23/23 type lookup cache used 573/65536 hits=1135 misses=666 symbol lookup cache used 476/65536 hits=2431 misses=476 finished... make[2]: Leaving directory '/<>/lib' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' Making install in lib make[2]: Entering directory '/<>/lib' make install-am make[3]: Entering directory '/<>/lib' make[4]: Entering directory '/<>/lib' /usr/bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /bin/bash ../libtool --mode=install /usr/bin/install -c librostlab-blast.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/librostlab-blast.so.0.0.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so.0 || { rm -f librostlab-blast.so.0 && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f librostlab-blast.so.0.0.0 librostlab-blast.so || { rm -f librostlab-blast.so && ln -s librostlab-blast.so.0.0.0 librostlab-blast.so; }; }) libtool: install: /usr/bin/install -c .libs/librostlab-blast.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.la libtool: install: /usr/bin/install -c .libs/librostlab-blast.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-driver.h rostlab/blast-result.h '/<>/debian/tmp/usr/include/rostlab' /usr/bin/mkdir -p '/<>/debian/tmp/usr/include/rostlab' /usr/bin/install -c -m 644 rostlab/blast-parser-location.h rostlab/blast-parser-parser.h rostlab/blast-parser-position.h rostlab/blast-parser-stack.h '/<>/debian/tmp/usr/include/rostlab' make[4]: Leaving directory '/<>/lib' make[3]: Leaving directory '/<>/lib' make[2]: Leaving directory '/<>/lib' make[2]: Entering directory '/<>' make[3]: Entering directory '/<>' make[3]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/tmp/usr/share/doc/librostlab-blast/examples' /usr/bin/install -c -m 644 examples/converged.ali examples/parseblast.cpp '/<>/debian/tmp/usr/share/doc/librostlab-blast/examples' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' d-shlibmove --commit \ --multiarch \ --exclude-la \ --v5 \ --movedev debian/tmp/usr/include/* usr/include \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabi install -d -m 755 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.a debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.so debian/librostlab-blast0-dev/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.so.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/librostlab-blast.so.0.0.0 debian/librostlab-blast0v5/usr/lib/arm-linux-gnueabi PKGDEV=librostlab-blast0-dev PKGSHL=librostlab-blast0v5 install -d -m 755 debian/librostlab-blast0-dev/usr/include mv debian/tmp/usr/include/rostlab debian/librostlab-blast0-dev/usr/include find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_perl -a debian/rules override_dh_link make[1]: Entering directory '/<>' find debian -name jquery.js -delete dh_link make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xlibrostlab-blast.tag make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'librostlab-blast0v5' in '../librostlab-blast0v5_1.0.1-14_armel.deb'. dpkg-deb: building package 'librostlab-blast0v5-dbgsym' in '../librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb'. dpkg-deb: building package 'librostlab-blast0-dev' in '../librostlab-blast0-dev_1.0.1-14_armel.deb'. dpkg-genbuildinfo --build=any -O../librostlab-blast_1.0.1-14_armel.buildinfo dpkg-genchanges --build=any -O../librostlab-blast_1.0.1-14_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-27T00:31:45Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ librostlab-blast_1.0.1-14_armel.changes: ---------------------------------------- Format: 1.8 Date: Wed, 24 Apr 2024 13:16:38 +0200 Source: librostlab-blast Binary: librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.0.1-14 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Étienne Mollier Description: librostlab-blast0-dev - very fast C++ library for parsing the output of NCBI BLAST progra librostlab-blast0v5 - very fast C++ library for parsing the output of NCBI BLAST progra Closes: 1048643 Changes: librostlab-blast (1.0.1-14) unstable; urgency=medium . * d/control: add myself to uploaders. * d/control: declare compliance to standards version 4.7.0. * d/clean: new: cleanup doxygen-doc/. (Closes: #1048643) * d/control: mark librostlab-blast0v5 M-A: same. * d/control: mark librostlab-blast-doc M-A: foreign. Checksums-Sha1: 47696c3e231acbf155536e77d91e610f6ded8ab4 90368 librostlab-blast0-dev_1.0.1-14_armel.deb f95d9d8c431d819bbaa20617a2d69b5197d7360b 439772 librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 079edf5144ccd77b881299e82dce55875f8ceef0 72548 librostlab-blast0v5_1.0.1-14_armel.deb fe40e4c41ae6617b2b4506a70dd8d38d7cfd53e0 9714 librostlab-blast_1.0.1-14_armel.buildinfo Checksums-Sha256: f792c0aa639e96651eb897058fbdae3b95e24ee628885f1df618118e38068061 90368 librostlab-blast0-dev_1.0.1-14_armel.deb 163f60732ad405a0e88f3d19a88ff475981b72a28fbbe9c24d646c82545ff62c 439772 librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 1f67e177e8cb2fcb55f128020ea744721297bc836a6855b907f5cde82506303e 72548 librostlab-blast0v5_1.0.1-14_armel.deb 419ecfdea2db5c92ac9161ab030491895c73b0cb2fcc911a648a04ef20e8418b 9714 librostlab-blast_1.0.1-14_armel.buildinfo Files: 01adead5c45f32c124a66799fe73eba4 90368 libdevel optional librostlab-blast0-dev_1.0.1-14_armel.deb 98af687feae44e05cbe84b9ce7b740db 439772 debug optional librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 83f892c2aee12ce4aca3c6798b979847 72548 libs optional librostlab-blast0v5_1.0.1-14_armel.deb a2f9d7033ed809339354a27aa45607ec 9714 science optional librostlab-blast_1.0.1-14_armel.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: librostlab-blast Binary: librostlab-blast0-dev librostlab-blast0v5 librostlab-blast0v5-dbgsym Architecture: armel Version: 1.0.1-14 Checksums-Md5: 01adead5c45f32c124a66799fe73eba4 90368 librostlab-blast0-dev_1.0.1-14_armel.deb 98af687feae44e05cbe84b9ce7b740db 439772 librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 83f892c2aee12ce4aca3c6798b979847 72548 librostlab-blast0v5_1.0.1-14_armel.deb Checksums-Sha1: 47696c3e231acbf155536e77d91e610f6ded8ab4 90368 librostlab-blast0-dev_1.0.1-14_armel.deb f95d9d8c431d819bbaa20617a2d69b5197d7360b 439772 librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 079edf5144ccd77b881299e82dce55875f8ceef0 72548 librostlab-blast0v5_1.0.1-14_armel.deb Checksums-Sha256: f792c0aa639e96651eb897058fbdae3b95e24ee628885f1df618118e38068061 90368 librostlab-blast0-dev_1.0.1-14_armel.deb 163f60732ad405a0e88f3d19a88ff475981b72a28fbbe9c24d646c82545ff62c 439772 librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb 1f67e177e8cb2fcb55f128020ea744721297bc836a6855b907f5cde82506303e 72548 librostlab-blast0v5_1.0.1-14_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sat, 27 Apr 2024 00:31:44 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.137), apt (= 2.9.2), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13.1), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bison (= 2:3.8.2+dfsg-1+b1), bsdextrautils (= 2.40-7), bsdutils (= 1:2.40-7), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), d-shlibs (= 0.106), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debian-archive-keyring (= 2023.4), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), doxygen (= 1.9.8+ds-2+b1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), flex (= 2.6.4-8.2+b2), fontconfig (= 2.15.0-1.1), fontconfig-config (= 2.15.0-1.1), fonts-dejavu-core (= 2.37-8), fonts-dejavu-mono (= 2.37-8), fonts-lmodern (= 2.005-1), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), gpgv (= 2.2.40-3), graphviz (= 2.42.2-9+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libabsl20230802 (= 20230802.1-4), libacl1 (= 2.3.2-1), libann0 (= 1.1.2+doc-9+b1), libaom3 (= 3.8.2-2), libapache-pom-java (= 29-2), libapt-pkg6.0t64 (= 2.9.2), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libavif16 (= 1.0.4-2), libbinutils (= 2.42-4), libblkid1 (= 2.40-7), libbrotli1 (= 1.1.0-2+b3), libbsd0 (= 0.12.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-18), libc-dev-bin (= 2.37-18), libc6 (= 2.37-18), libc6-dev (= 2.37-18), libcairo2 (= 1.18.0-3+b1), libcap-ng0 (= 0.8.5-1), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcdt5 (= 2.42.2-9+b1), libcgraph6 (= 2.42.2-9+b1), libclang-cpp16t64 (= 1:16.0.6-25), libclang1-16t64 (= 1:16.0.6-25), libcommons-logging-java (= 1.3.0-1), libcommons-parent-java (= 56-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdatrie1 (= 0.2.13-3), libdav1d7 (= 1.4.1-1), libdb5.3t64 (= 5.3.28+dfsg2-7), libde265-0 (= 1.0.15-1+b1), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdeflate0 (= 1.20-1), libdpkg-perl (= 1.22.6), libedit2 (= 3.1-20230828-1), libelf1t64 (= 0.191-1+b1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libfmt9 (= 9.1.0+ds1-2), libfontbox-java (= 1:1.8.16-5), libfontconfig1 (= 2.15.0-1.1), libfreetype6 (= 2.13.2+dfsg-1+b4), libfribidi0 (= 1.0.13-3+b1), libgav1-1 (= 0.19.0-2), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgcrypt20 (= 1.10.3-2), libgd3 (= 2.3.3-9+b3), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libglib2.0-0t64 (= 2.78.4-7), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.5-2), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libgraphite2-3 (= 1.3.14-2), libgts-0.7-5t64 (= 0.7.6+darcs121130-5.2), libgvc6 (= 2.42.2-9+b1), libgvpr2 (= 2.42.2-9+b1), libharfbuzz0b (= 8.3.0-2+b1), libheif-plugin-dav1d (= 1.17.6-1+b2), libheif-plugin-libde265 (= 1.17.6-1+b2), libheif1 (= 1.17.6-1+b2), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14-20240330-1), libice6 (= 2:1.0.10-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), libjbig0 (= 2.1-6.1+b1), libjpeg62-turbo (= 1:2.1.5-3), libkpathsea6 (= 2023.20230311.66589-9+b2), liblab-gamut1 (= 2.42.2-9+b1), liblerc4 (= 4.0.0+ds-4+b1), libllvm16t64 (= 1:16.0.6-25), liblsan0 (= 14-20240330-1), libltdl7 (= 2.4.7-7), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmount1 (= 2.40-7), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.4+20240414-1), libnettle8t64 (= 3.9.1-2.2), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0g (= 1.5.3-7), libpango-1.0-0 (= 1.52.1+ds-1), libpangocairo-1.0-0 (= 1.52.1+ds-1), libpangoft2-1.0-0 (= 1.52.1+ds-1), libpaper-utils (= 1.1.29), libpaper1 (= 1.1.29), libpathplan4 (= 2.42.2-9+b1), libpcre2-8-0 (= 10.42-4+b1), libpdfbox-java (= 1:1.8.16-5), libperl5.38t64 (= 5.38.2-3.2+b2), libpipeline1 (= 1.5.7-2), libpixman-1-0 (= 0.42.2-1+b1), libpng16-16t64 (= 1.6.43-5), libpotrace0 (= 1.16-2+b1), libptexenc1 (= 2023.20230311.66589-9+b2), libpython3-stdlib (= 3.11.8-1), libpython3.11-minimal (= 3.11.9-1), libpython3.11-stdlib (= 3.11.9-1), libquadmath0 (= 14-20240330-1), librav1e0 (= 0.7.1-2), libreadline8t64 (= 8.2-4), librostlab3-dev (= 1.0.20-13.1), librostlab3t64 (= 1.0.20-13.1), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsemanage-common (= 3.5-1), libsemanage2 (= 3.5-1+b3), libsepol2 (= 3.5-2), libsframe1 (= 2.42-4), libsharpyuv0 (= 1.3.2-0.4+b1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.40-7), libsqlite3-0 (= 3.45.3-1), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsvtav1enc1d1 (= 1.7.0+dfsg-2+b1), libsynctex2 (= 2023.20230311.66589-9+b2), libsystemd0 (= 255.5-1), libtasn1-6 (= 4.19.0-3+b2), libteckit0 (= 2.5.12+ds1-1), libtexlua53-5 (= 2023.20230311.66589-9+b2), libthai-data (= 0.1.29-2), libthai0 (= 0.1.29-2), libtiff6 (= 4.5.1+git230720-4), libtinfo6 (= 6.4+20240414-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.5-1), libunistring5 (= 1.2-1), libuuid1 (= 2.40-7), libwebp7 (= 1.3.2-0.4+b1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libxapian30 (= 1.4.25-1), libxau6 (= 1:1.0.9-1), libxaw7 (= 2:1.0.14-1+b2), libxcb-render0 (= 1.17.0-1), libxcb-shm0 (= 1.17.0-1), libxcb1 (= 1.17.0-1), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.4-1+b1), libxi6 (= 2:1.8.1-1), libxml2 (= 2.9.14+dfsg-1.3+b2), libxmu6 (= 2:1.1.3-3+b2), libxpm4 (= 1:3.5.17-1+b1), libxrender1 (= 1:0.9.10-1.1), libxt6t64 (= 1:1.2.1-1.2), libxxhash0 (= 0.8.2-2+b1), libyuv0 (= 0.0~git202401110.af6ac82-1), libz3-4 (= 4.8.12-3.1+b2), libzstd1 (= 1.5.5+dfsg2-2), libzzip-0-13t64 (= 0.13.72+dfsg.1-1.2+b1), linux-libc-dev (= 6.7.12-1), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncurses-base (= 6.4+20240414-1), ncurses-bin (= 6.4+20240414-1), netbase (= 6.4), passwd (= 1:4.13+dfsg1-4), patch (= 2.7.6-7), perl (= 5.38.2-3.2+b2), perl-base (= 5.38.2-3.2+b2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), preview-latex-style (= 13.2-1), python3 (= 3.11.8-1), python3-minimal (= 3.11.8-1), python3.11 (= 3.11.9-1), python3.11-minimal (= 3.11.9-1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.09-1), t1utils (= 1.41-4), tar (= 1.35+dfsg-3), tex-common (= 6.18), texlive-base (= 2023.20240207-1), texlive-binaries (= 2023.20230311.66589-9+b2), texlive-fonts-recommended (= 2023.20240207-1), texlive-latex-base (= 2023.20240207-1), texlive-latex-extra (= 2023.20240207-1), texlive-latex-recommended (= 2023.20240207-1), texlive-pictures (= 2023.20240207-1), tzdata (= 2024a-3), ucf (= 3.0043+nmu1), usr-is-merged (= 39), util-linux (= 2.40-7), x11-common (= 1:7.7+23), xdg-utils (= 1.1.3-4.1), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1713957398" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ librostlab-blast0-dev_1.0.1-14_armel.deb ---------------------------------------- new Debian package, version 2.0. size 90368 bytes: control archive=1224 bytes. 971 bytes, 24 lines control 1137 bytes, 14 lines md5sums Package: librostlab-blast0-dev Source: librostlab-blast Version: 1.0.1-14 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1384 Depends: librostlab-blast0v5 (= 1.0.1-14), librostlab-dev Suggests: librostlab-blast-doc Conflicts: librostlab-blast-dev Provides: librostlab-blast-dev Section: libdevel Priority: optional Homepage: https://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs (devel) This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains files necessary for developing applications with librostlab-blast. drwxr-xr-x root/root 0 2024-04-24 11:16 ./ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/include/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/include/rostlab/ -rw-r--r-- root/root 4139 2024-04-24 11:16 ./usr/include/rostlab/blast-parser-driver.h -rw-r--r-- root/root 8083 2024-04-24 11:16 ./usr/include/rostlab/blast-parser-location.h -rw-r--r-- root/root 27508 2024-04-24 11:16 ./usr/include/rostlab/blast-parser-parser.h -rw-r--r-- root/root 421 2024-04-24 11:16 ./usr/include/rostlab/blast-parser-position.h -rw-r--r-- root/root 320 2024-04-24 11:16 ./usr/include/rostlab/blast-parser-stack.h -rw-r--r-- root/root 10981 2024-04-24 11:16 ./usr/include/rostlab/blast-result.h drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 1337452 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/librostlab-blast.a lrwxrwxrwx root/root 0 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/librostlab-blast.so -> librostlab-blast.so.0.0.0 drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/ -rw-r--r-- root/root 816 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/README.test -rw-r--r-- root/root 1000 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/changelog.Debian.gz -rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0-dev/changelog.gz -rw-r--r-- root/root 2021 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/copyright drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/examples/ -rw-r--r-- root/root 4462 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/examples/converged.ali -rw-r--r-- root/root 324 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/examples/parseblast.cpp -rw-r--r-- root/root 712 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0-dev/run-unit-test librostlab-blast0v5-dbgsym_1.0.1-14_armel.deb --------------------------------------------- new Debian package, version 2.0. size 439772 bytes: control archive=556 bytes. 434 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: librostlab-blast0v5-dbgsym Source: librostlab-blast Version: 1.0.1-14 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 456 Depends: librostlab-blast0v5 (= 1.0.1-14) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for librostlab-blast0v5 Build-Ids: 6736aeafb66d16c354155274c34bd32d45fc0569 drwxr-xr-x root/root 0 2024-04-24 11:16 ./ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/debug/.build-id/67/ -rw-r--r-- root/root 456672 2024-04-24 11:16 ./usr/lib/debug/.build-id/67/36aeafb66d16c354155274c34bd32d45fc0569.debug drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0v5-dbgsym -> librostlab-blast0v5 librostlab-blast0v5_1.0.1-14_armel.deb -------------------------------------- new Debian package, version 2.0. size 72548 bytes: control archive=1008 bytes. 869 bytes, 22 lines control 333 bytes, 4 lines md5sums 50 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: librostlab-blast0v5 Source: librostlab-blast Version: 1.0.1-14 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1261 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 13.1) Conflicts: librostlab-blast0 Section: libs Priority: optional Multi-Arch: same Homepage: https://rostlab.org/ Description: very fast C++ library for parsing the output of NCBI BLAST programs This package provides a very fast library for parsing the default output of NCBI BLAST programs into a C++ structure. . libzerg is faster, but it provides only lexing (i.e. it only returns pairs of token identifiers and token string values). librostlab-blast uses a parser generated with bison on top of a flex-generated lexer very similar to that of libzerg. . This package contains the shared library. drwxr-xr-x root/root 0 2024-04-24 11:16 ./ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/librostlab-blast.so.0 -> librostlab-blast.so.0.0.0 -rw-r--r-- root/root 1275292 2024-04-24 11:16 ./usr/lib/arm-linux-gnueabi/librostlab-blast.so.0.0.0 drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0v5/ -rw-r--r-- root/root 997 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0v5/changelog.Debian.gz -rw-r--r-- root/root 210 2012-11-24 19:25 ./usr/share/doc/librostlab-blast0v5/changelog.gz -rw-r--r-- root/root 2021 2024-04-24 11:16 ./usr/share/doc/librostlab-blast0v5/copyright lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1429 B] Get:5 copy:/<>/apt_archive ./ Packages [1508 B] Fetched 3552 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armel unzip 0 upgraded, 124 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 49.0 MB of additional disk space will be used. 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http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:78 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:82 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:85 http://localhost:3142/debian sid/main amd64 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libpackage-stash-perl all 0.40-1 [22.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:99 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:104 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:108 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:110 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:112 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:116 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:117 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:120 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:121 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:122 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:123 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:124 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 0s (98.9 MB/s) Selecting previously unselected package openssl. (Reading database ... 41927 files and directories currently installed.) Preparing to unpack .../000-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../003-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package gpg. Preparing to unpack .../005-gpg_2.2.40-3_amd64.deb ... Unpacking gpg (2.2.40-3) ... Selecting previously unselected package iso-codes. 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... 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Setting up gpg (2.2.40-3) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.37-18) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 30680 Build-Time: 26 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 78 Job: librostlab-blast_1.0.1-14 Lintian: pass Machine Architecture: amd64 Package: librostlab-blast Package-Time: 112 Source-Version: 1.0.1-14 Space: 30680 Status: successful Version: 1.0.1-14 -------------------------------------------------------------------------------- Finished at 2024-04-27T00:31:45Z Build needed 00:01:52, 30680k disk space