sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +=====================================================================================+ | libsmithwaterman 0.0+git20160702.2610e25-12 (armel) Sun, 16 Jan 2022 02:19:30 +0000 | +=====================================================================================+ Package: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Source Version: 0.0+git20160702.2610e25-12 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-72075c5e-4d2a-4ae3-a274-ec8ed00ed61c' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-UZKMd0/resolver-mzKsfn' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [165 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-15-2004.51-F-2022-01-15-0801.48.pdiff [29.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2022-01-15-2004.51-F-2022-01-15-0801.48.pdiff [29.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-15-2004.51-F-2022-01-15-0801.48.pdiff [43.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2022-01-15-2004.51-F-2022-01-15-0801.48.pdiff [43.8 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armel Packages [8509 kB] Fetched 8875 kB in 4s (2359 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libsmithwaterman' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libsmithwaterman.git Please use: git clone https://salsa.debian.org/med-team/libsmithwaterman.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 33.4 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-12 (dsc) [2337 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-12 (tar) [24.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-12 (diff) [6212 B] Fetched 33.4 kB in 0s (606 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libsmithwaterman-UZKMd0/libsmithwaterman-0.0+git20160702.2610e25' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-UZKMd0' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [415 B] Get:5 copy:/<>/apt_archive ./ Packages [504 B] Fetched 1876 B in 0s (73.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:armel libdisorder0:armel libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu67 libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armel libnsl2:armel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-11-multilib gcc-11-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel glibc-doc manpages-dev:armel gnupg git bzr krb5-doc:armel krb5-user:armel libstdc++-11-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armel libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-11-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-11 g++-11-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-arm-linux-gnueabi gcc-11-arm-linux-gnueabi-base gcc-11-base:armel gcc-11-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdisorder-dev:armel libdisorder0:armel libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libicu67 libio-string-perl libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armel libnsl2:armel libperl5.32 libpipeline1 libsigsegv2 libssl1.1:armel libstdc++-11-dev libstdc++-11-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-dev libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf rpcsvc-proto sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 112 newly installed, 0 to remove and 0 not upgraded. Need to get 230 MB of archives. After this operation, 834 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [928 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-6 [2824 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-6 [4106 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-6 [293 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.4.0-4+b1 [200 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.41-2 [295 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.41-2 [129 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.41-2 [66.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.37.2-6 [143 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.5-1 [37.6 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-4 [1354 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.71-2 [343 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.5-1.1 [823 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.37.50.20220106-2 [3154 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.27-1 [104 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 rpcsvc-proto amd64 1.4.2-4 [63.1 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.33-2 [2273 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev amd64 11.2.0-14 [1979 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11 amd64 11.2.0-14 [10.2 MB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:11.2.0-2 [1636 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.21.1 [1568 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.21.1 [2171 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi-base amd64 11.2.0-9cross1 [206 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [48.3 MB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:11.2.0-2 [17.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.33-1cross1 [1130 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 11.2.0-9cross1 [38.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 11.2.0-9cross1 [88.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 11.2.0-9cross1 [8812 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armel-cross all 11.2.0-9cross1 [1937 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 11.2.0-9cross1 [426 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 11.2.0-9cross1 [798 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-11-dev-armel-cross all 11.2.0-9cross1 [703 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [54.8 MB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:11.2.0-2 [1460 B] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.15.5-1cross1 [1541 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.33-1cross1 [1810 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-11-dev-armel-cross all 11.2.0-9cross1 [1954 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 g++-11-arm-linux-gnueabi amd64 11.2.0-9cross1 [52.4 MB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:11.2.0-2 [1176 B] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-7 [8622 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.12+dfsg-5+b1 [701 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg-2 [340 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.104 [18.6 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.6 [193 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.186-1 [179 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.6 [1054 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main armel gcc-11-base armel 11.2.0-14 [207 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 11.2.0-14 [38.4 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.33-2 [2366 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.4.0-4+b1 [2703 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 11.2.0-14 [9016 B] Get:91 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.15.5-2 [1422 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.27-1 [97.2 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.27-1 [113 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.46.5-2 [74.9 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.18.3-7 [62.4 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.18.3-7 [108 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-2 [14.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1m-1 [1275 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.18.3-7 [315 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.18.3-7 [142 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libtirpc3 armel 1.3.2-2 [71.6 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libtirpc-dev armel 1.3.2-2 [182 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.33-2 [1857 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libdisorder0 armel 0.0.2+git20130809.8062ee1-4 [6236 B] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libdisorder-dev armel 0.0.2+git20130809.8062ee1-4 [4524 B] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 11.2.0-14 [90.7 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 11.2.0-14 [467 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 11.2.0-14 [799 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.4.0-4+b1 [640 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.4.0-4+b1 [1761 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 230 MB in 2s (129 MB/s) Selecting previously unselected package perl-modules-5.32. (Reading database ... 10576 files and directories currently installed.) Preparing to unpack .../000-perl-modules-5.32_5.32.1-6_all.deb ... Unpacking perl-modules-5.32 (5.32.1-6) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../001-libperl5.32_5.32.1-6_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-6) ... Selecting previously unselected package perl. Preparing to unpack .../002-perl_5.32.1-6_amd64.deb ... Unpacking perl (5.32.1-6) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../003-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-9-base:armel. Preparing to unpack .../004-gcc-9-base_9.4.0-4+b1_armel.deb ... Unpacking gcc-9-base:armel (9.4.0-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... 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Selecting previously unselected package libdisorder0:armel. Preparing to unpack .../104-libdisorder0_0.0.2+git20130809.8062ee1-4_armel.deb ... Unpacking libdisorder0:armel (0.0.2+git20130809.8062ee1-4) ... Selecting previously unselected package libdisorder-dev:armel. Preparing to unpack .../105-libdisorder-dev_0.0.2+git20130809.8062ee1-4_armel.deb ... Unpacking libdisorder-dev:armel (0.0.2+git20130809.8062ee1-4) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../106-libgomp1_11.2.0-14_armel.deb ... Unpacking libgomp1:armel (11.2.0-14) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../107-libstdc++6_11.2.0-14_armel.deb ... Unpacking libstdc++6:armel (11.2.0-14) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../108-libubsan1_11.2.0-14_armel.deb ... Unpacking libubsan1:armel (11.2.0-14) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../109-libgcc-9-dev_9.4.0-4+b1_armel.deb ... Unpacking libgcc-9-dev:armel (9.4.0-4+b1) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../110-libstdc++-9-dev_9.4.0-4+b1_armel.deb ... Unpacking libstdc++-9-dev:armel (9.4.0-4+b1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../111-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.5-1) ... Setting up gcc-11-base:armel (11.2.0-14) ... Setting up binutils-arm-linux-gnueabi (2.37.50.20220106-2) ... Setting up gcc-11-arm-linux-gnueabi-base:amd64 (11.2.0-9cross1) ... Setting up bsdextrautils (2.37.2-6) ... Setting up libicu67:amd64 (67.1-7) ... Setting up cpp-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up perl-modules-5.32 (5.32.1-6) ... Setting up libmagic1:amd64 (1:5.41-2) ... Setting up linux-libc-dev:armel (5.15.5-2) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.41-2) ... Setting up linux-libc-dev-armel-cross (5.15.5-1cross1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up cpp-arm-linux-gnueabi (4:11.2.0-2) ... Setting up rpcsvc-proto (1.4.2-4) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up d-shlibs (0.104) ... Setting up libperl5.32:amd64 (5.32.1-6) ... Setting up libc6-armel-cross (2.33-1cross1) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.17) ... Setting up libcrypt-dev:amd64 (1:4.4.27-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.33-2) ... Setting up libc6-dev-armel-cross (2.33-1cross1) ... Setting up libelf1:amd64 (0.186-1) ... Setting up libxml2:amd64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up gcc-9-base:armel (9.4.0-4+b1) ... Setting up gettext (0.21-4) ... Setting up libgomp1-armel-cross (11.2.0-9cross1) ... Setting up libtool (2.4.6-15) ... Setting up libgcc-s1-armel-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libstdc++6-armel-cross (11.2.0-9cross1) ... Setting up libatomic1-armel-cross (11.2.0-9cross1) ... Setting up perl (5.32.1-6) ... Setting up libubsan1-armel-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.21.1) ... Setting up autoconf (2.71-2) ... Setting up libstdc++-11-dev:amd64 (11.2.0-14) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up libsub-override-perl (0.09-2) ... Setting up libasan6-armel-cross (11.2.0-9cross1) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up libgcc-11-dev-armel-cross (11.2.0-9cross1) ... Setting up g++-11 (11.2.0-14) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.6) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.21.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up g++ (4:11.2.0-2) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up libstdc++-11-dev-armel-cross (11.2.0-9cross1) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gcc-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-11-arm-linux-gnueabi (11.2.0-9cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up gcc-arm-linux-gnueabi (4:11.2.0-2) ... Setting up debhelper (13.6) ... Setting up g++-arm-linux-gnueabi (4:11.2.0-2) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (11.2.0-14) ... Setting up libc6:armel (2.33-2) ... Setting up libstdc++6:armel (11.2.0-14) ... Setting up libdisorder0:armel (0.0.2+git20130809.8062ee1-4) ... Setting up libkeyutils1:armel (1.6.1-2) ... Setting up libssl1.1:armel (1.1.1m-1) ... Setting up libcrypt1:armel (1:4.4.27-1) ... Setting up libcom-err2:armel (1.46.5-2) ... Setting up libgomp1:armel (11.2.0-14) ... Setting up libkrb5support0:armel (1.18.3-7) ... Setting up libasan5:armel (9.4.0-4+b1) ... Setting up libatomic1:armel (11.2.0-14) ... Setting up libk5crypto3:armel (1.18.3-7) ... Setting up libdisorder-dev:armel (0.0.2+git20130809.8062ee1-4) ... Setting up libubsan1:armel (11.2.0-14) ... Setting up libcrypt-dev:armel (1:4.4.27-1) ... Setting up libkrb5-3:armel (1.18.3-7) ... Setting up libgcc-9-dev:armel (9.4.0-4+b1) ... Setting up libgssapi-krb5-2:armel (1.18.3-7) ... Setting up libtirpc3:armel (1.3.2-2) ... Setting up libtirpc-dev:armel (1.3.2-2) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.33-2) ... Setting up libstdc++-9-dev:armel (9.4.0-4+b1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.33-2) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-17-amd64 #1 SMP Debian 4.19.194-3 (2021-07-18) amd64 (x86_64) Toolchain package versions: binutils_2.37.50.20220106-2 dpkg-dev_1.21.1 g++-11_11.2.0-14 gcc-11_11.2.0-14 libc6-dev_2.33-2 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-armel-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-4+b1 libstdc++6_11.2.0-14 libstdc++6-armel-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.50.20220106-2 binutils-arm-linux-gnueabi_2.37.50.20220106-2 binutils-common_2.37.50.20220106-2 binutils-x86-64-linux-gnu_2.37.50.20220106-2 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-6 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-14 cpp-11-arm-linux-gnueabi_11.2.0-9cross1 cpp-8_8.4.0-7 cpp-arm-linux-gnueabi_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-armel_12.9 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.26-1.2 fdisk_2.37.2-6 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-14 g++-11-arm-linux-gnueabi_11.2.0-9cross1 g++-arm-linux-gnueabi_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-14 gcc-11-arm-linux-gnueabi_11.2.0-9cross1 gcc-11-arm-linux-gnueabi-base_11.2.0-9cross1 gcc-11-base_11.2.0-14 gcc-11-cross-base_11.2.0-9cross1 gcc-8-base_8.4.0-7 gcc-9-base_9.4.0-4+b1 gcc-arm-linux-gnueabi_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.3.14 libarchive-zip-perl_1.68-1 libasan5_9.4.0-4+b1 libasan6_11.2.0-14 libasan6-armel-cross_11.2.0-9cross1 libatomic1_11.2.0-14 libatomic1-armel-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libbinutils_2.37.50.20220106-2 libblkid1_2.37.2-6 libbz2-1.0_1.0.8-5 libc-bin_2.33-2 libc-dev-bin_2.33-2 libc6_2.33-2 libc6-armel-cross_2.33-1cross1 libc6-dev_2.33-2 libc6-dev-armel-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libctf-nobfd0_2.37.50.20220106-2 libctf0_2.37.50.20220106-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.21.1 libelf1_0.186-1 libext2fs2_1.46.5-2 libfakeroot_1.26-1.2 libfdisk1_2.37.2-6 libffi6_3.2.1-9 libffi8_3.4.2-3 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-14 libgcc-11-dev-armel-cross_11.2.0-9cross1 libgcc-9-dev_9.4.0-4+b1 libgcc-s1_11.2.0-14 libgcc-s1-armel-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-5 libgomp1_11.2.0-14 libgomp1-armel-cross_11.2.0-9cross1 libgpg-error0_1.43-2 libgssapi-krb5-2_1.18.3-7 libhogweed4_3.5.1+really3.4.1-1 libhogweed6_3.7.3-1 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl19_0.20-2 libisl23_0.24-2 libitm1_11.2.0-14 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-14 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-6 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libmpx2_8.4.0-7 libncursesw6_6.3-1 libnettle6_3.5.1+really3.4.1-1 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.28_5.28.1-6 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libquadmath0_11.2.0-14 libreadline8_8.1.2-1 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage1_3.1-2 libsemanage2_3.3-1+b1 libsepol1_3.1-1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-6 libss2_1.46.5-2 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-armel-cross_11.2.0-9cross1 libstdc++-9-dev_9.4.0-4+b1 libstdc++6_11.2.0-14 libstdc++6-armel-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_250.2-3 libtasn1-6_4.18.0-4 libtinfo6_6.3-1 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-14 libubsan1_11.2.0-14 libubsan1-armel-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_250.2-3 libunistring2_0.9.10-6 libuuid1_2.37.2-6 libxml-libxml-perl_2.0207+dfsg-2 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.5-2 linux-libc-dev-armel-cross_5.15.5-1cross1 login_1:4.8.1-2 logsave_1.46.5-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-6 ncurses-base_6.3-1 ncurses-bin_6.3-1 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.28_5.28.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 readline-common_8.1.2-1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-6 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libsmithwaterman Binary: libsmithwaterman0, libsmithwaterman-dev, smithwaterman Architecture: any Version: 0.0+git20160702.2610e25-12 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ekg/smithwaterman Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev Package-List: libsmithwaterman-dev deb libdevel optional arch=any libsmithwaterman0 deb libs optional arch=any smithwaterman deb science optional arch=any Checksums-Sha1: 6b131fcd61fdcbd2d86ac7ea415983caf3a0e03e 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 5426e9515a47f3fc38f4fb91999c784ea3ac9331 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Checksums-Sha256: 6266f043c8a12cad8b1309f620c180fc422a1e9ee9df0163691652fa523f5bd3 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz d37cebbe58fa8ab750eff71dcf0ddafe63895ecc254e52c17eb34dcb746b681b 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Files: 75f2ad1f67ed481fcd8b8a4178950e5c 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 8ed7f78831dbbd00b613afb87724010a 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmFmktsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtED/Q//bygXEryBJWTVDRou3puu6bHWXDrG8D2d 456e7RyCvUXJljUY8fvQF6mYsv7hC/MHuLlKkY5S4lmsA7AU9+FTZ0eyQFfqVBJG XIvAefc5KURSgeDsuVtmf5e2wehlfkl6ecWKJ6VMO67ZXogHkCT+MgHJrc3qc4rK 6Be1uhfhzIP/g8DwaoI+TxHPmyDVfyEjVDZXYYwchWwXlRtfeVopaRNAZPq5zyEl Lnc8sWjpwn9wRyxCwmZaJ9b9tvGiJMO54JgHu+LzHaKYwjFWRBhke7+7E9wykccj VonmSmyzshlt7FSXBU/2uD7awL3giOkzBKbJ2y6c4mFgd4jOF4bKhtQNn5ryLEnp CrOI1tHyN7ztVDFpM2bz1KedQHz4V0NppKm80hMUPIWr5RW52B0bpiMIb/ZNUZpb 8eYnH8qnb08zEbpaSlgoXo+FlTSlY7e4cPGkYPKTn9ti/hpaRStjSt6m7lxH+p9e 0RLswUVu4o0cmm6bl/fhcjby4fu0bC4b5f92CjLbIZYOgCTgEOr3P8TqLNKazgoU cGOVmVscgVFgURmKpep78nmhz9Dbcz7m0yQMxdo5q/Se5UbapSinsyk8KT81loQn BhsDznAKvvojZw1mXVNI5LO0R0QinfNiwrk5D8auMxn4NYw9bd9UVWyf9gHTMorf KsOR5zmnVWc= =r5ar -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.NvLHDybA/trustedkeys.kbx': General error gpgv: Signature made Wed Oct 13 08:03:39 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libsmithwaterman_0.0+git20160702.2610e25-12.dsc dpkg-source: info: extracting libsmithwaterman in /<> dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-72075c5e-4d2a-4ae3-a274-ec8ed00ed61c SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libsmithwaterman dpkg-buildpackage: info: source version 0.0+git20160702.2610e25-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --no-parallel dh_clean debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:99: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabi --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabi configure: loading site script /etc/dpkg-cross/cross-config.armel checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabi-strip... arm-linux-gnueabi-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1003' is supported by ustar format... yes checking whether GID '1003' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabi checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for arm-linux-gnueabi-gcc... arm-linux-gnueabi-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabi-gcc accepts -g... yes checking for arm-linux-gnueabi-gcc option to enable C11 features... none needed checking whether arm-linux-gnueabi-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabi-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabi-gcc... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabi-nm -B checking the name lister (/usr/bin/arm-linux-gnueabi-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabi format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabi/bin/ld option to reload object files... -r checking for arm-linux-gnueabi-objdump... arm-linux-gnueabi-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabi-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabi-ar... arm-linux-gnueabi-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabi-strip... (cached) arm-linux-gnueabi-strip checking for arm-linux-gnueabi-ranlib... arm-linux-gnueabi-ranlib checking command to parse /usr/bin/arm-linux-gnueabi-nm -B output from arm-linux-gnueabi-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabi-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabi-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabi-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-gcc static flag -static works... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... yes checking if arm-linux-gnueabi-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-gcc linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for arm-linux-gnueabi-g++... arm-linux-gnueabi-g++ checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabi-g++ accepts -g... yes checking for arm-linux-gnueabi-g++ option to enable C++11 features... none needed checking dependency style of arm-linux-gnueabi-g++... none checking how to run the C++ preprocessor... arm-linux-gnueabi-g++ -E checking for ld used by arm-linux-gnueabi-g++... /usr/arm-linux-gnueabi/bin/ld checking if the linker (/usr/arm-linux-gnueabi/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabi-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabi-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabi-g++ static flag -static works... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... yes checking if arm-linux-gnueabi-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabi-g++ linker (/usr/arm-linux-gnueabi/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16776: AX_CXXFLAGS: command not found checking for egrep... (cached) /bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libsmithwaterman.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-am make[2]: Entering directory '/<>' arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o smithwaterman.o smithwaterman.cpp /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-BandedSmithWaterman.lo `test -f 'BandedSmithWaterman.cpp' || echo './'`BandedSmithWaterman.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-BandedSmithWaterman.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -o libsmithwaterman_la-BandedSmithWaterman.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-IndelAllele.lo `test -f 'IndelAllele.cpp' || echo './'`IndelAllele.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-IndelAllele.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -o libsmithwaterman_la-IndelAllele.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-LeftAlign.lo `test -f 'LeftAlign.cpp' || echo './'`LeftAlign.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-LeftAlign.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -o libsmithwaterman_la-LeftAlign.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-Repeats.lo `test -f 'Repeats.cpp' || echo './'`Repeats.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-Repeats.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -o libsmithwaterman_la-Repeats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-SmithWatermanGotoh.lo `test -f 'SmithWatermanGotoh.cpp' || echo './'`SmithWatermanGotoh.cpp libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-SmithWatermanGotoh.o libtool: compile: arm-linux-gnueabi-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -o libsmithwaterman_la-SmithWatermanGotoh.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libsmithwaterman.la -rpath /usr/lib/arm-linux-gnueabi libsmithwaterman_la-BandedSmithWaterman.lo libsmithwaterman_la-IndelAllele.lo libsmithwaterman_la-LeftAlign.lo libsmithwaterman_la-Repeats.lo libsmithwaterman_la-SmithWatermanGotoh.lo libtool: link: arm-linux-gnueabi-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabi/11/../../../../arm-linux-gnueabi/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabi/11/crtbeginS.o .libs/libsmithwaterman_la-BandedSmithWaterman.o .libs/libsmithwaterman_la-IndelAllele.o .libs/libsmithwaterman_la-LeftAlign.o .libs/libsmithwaterman_la-Repeats.o .libs/libsmithwaterman_la-SmithWatermanGotoh.o -L/usr/lib/gcc-cross/arm-linux-gnueabi/11 -L/usr/lib/gcc-cross/arm-linux-gnueabi/11/../../../../arm-linux-gnueabi/lib -L/lib/arm-linux-gnueabi -L/usr/lib/arm-linux-gnueabi -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabi/11/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabi/11/../../../../arm-linux-gnueabi/lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsmithwaterman.so.0 -o .libs/libsmithwaterman.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so.0" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so.0") libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so") libtool: link: arm-linux-gnueabi-ar cr .libs/libsmithwaterman.a libsmithwaterman_la-BandedSmithWaterman.o libsmithwaterman_la-IndelAllele.o libsmithwaterman_la-LeftAlign.o libsmithwaterman_la-Repeats.o libsmithwaterman_la-SmithWatermanGotoh.o libtool: link: arm-linux-gnueabi-ranlib .libs/libsmithwaterman.a libtool: link: ( cd ".libs" && rm -f "libsmithwaterman.la" && ln -s "../libsmithwaterman.la" "libsmithwaterman.la" ) /bin/bash ./libtool --tag=CXX --mode=link arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o smithwaterman smithwaterman.o libsmithwaterman.la -ldisorder libtool: link: arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/smithwaterman smithwaterman.o ./.libs/libsmithwaterman.so -ldisorder make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libsmithwaterman-0.0\+git20160702.2610e25/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' /bin/bash ./libtool --mode=install /usr/bin/install -c libsmithwaterman.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/libsmithwaterman.so.0.0.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so.0 || { rm -f libsmithwaterman.so.0 && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabi && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so || { rm -f libsmithwaterman.so && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so; }; }) libtool: install: /usr/bin/install -c .libs/libsmithwaterman.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.la libtool: install: /usr/bin/install -c .libs/libsmithwaterman.a /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.a libtool: install: arm-linux-gnueabi-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabi' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c smithwaterman '/<>/debian/tmp/usr/bin' libtool: warning: 'libsmithwaterman.la' has not been installed in '/usr/lib/arm-linux-gnueabi' libtool: install: /usr/bin/install -c .libs/smithwaterman /<>/debian/tmp/usr/bin/smithwaterman /bin/mkdir -p '/<>/debian/tmp/usr/include/smithwaterman' /usr/bin/install -c -m 644 BandedSmithWaterman.h IndelAllele.h LeftAlign.h Mosaik.h Repeats.h SmithWatermanGotoh.h convert.h '/<>/debian/tmp/usr/include/smithwaterman' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/pkgconfig' /usr/bin/install -c -m 644 libsmithwaterman.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabi/pkgconfig' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabi/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabi install -d -m 755 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.a debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabi mv debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.so debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabi mv /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0.0.0 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabi PKGDEV=libsmithwaterman-dev PKGSHL=libsmithwaterman0 install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabi/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabi/pkgconfig find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsmithwaterman0/usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol shannon_H used by debian/libsmithwaterman0/usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/smithwaterman/usr/bin/smithwaterman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/smithwaterman/usr/bin/smithwaterman was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsmithwaterman-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libsmithwaterman0' in '../libsmithwaterman0_0.0+git20160702.2610e25-12_armel.deb'. dpkg-deb: building package 'libsmithwaterman0-dbgsym' in '../libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_armel.deb'. dpkg-deb: building package 'libsmithwaterman-dev' in '../libsmithwaterman-dev_0.0+git20160702.2610e25-12_armel.deb'. dpkg-deb: building package 'smithwaterman' in '../smithwaterman_0.0+git20160702.2610e25-12_armel.deb'. dpkg-deb: building package 'smithwaterman-dbgsym' in '../smithwaterman-dbgsym_0.0+git20160702.2610e25-12_armel.deb'. dpkg-genbuildinfo --build=any -O../libsmithwaterman_0.0+git20160702.2610e25-12_armel.buildinfo dpkg-genchanges --build=any -O../libsmithwaterman_0.0+git20160702.2610e25-12_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-16T02:20:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libsmithwaterman_0.0+git20160702.2610e25-12_armel.changes: ---------------------------------------------------------- Format: 1.8 Date: Wed, 13 Oct 2021 10:01:23 +0200 Source: libsmithwaterman Binary: libsmithwaterman-dev libsmithwaterman0 libsmithwaterman0-dbgsym smithwaterman smithwaterman-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 0.0+git20160702.2610e25-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two strings or genomic sequence smithwaterman - determine similar regions between two strings or genomic sequence Closes: 984207 Changes: libsmithwaterman (0.0+git20160702.2610e25-12) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + libsmithwaterman-dev, libsmithwaterman0: Add Multi-Arch: same. * Drop symbols file to reduce maintenance burden Closes: #984207 Checksums-Sha1: 362ccd47e410339efecce1e27bcd5768e830b0b3 37884 libsmithwaterman-dev_0.0+git20160702.2610e25-12_armel.deb 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a550639b9a528d57028947d455a8820e5f640e5231c0f0c689996241b67153f9 12548 smithwaterman_0.0+git20160702.2610e25-12_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 16 Jan 2022 02:20:56 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.118), apt (= 2.3.14), autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.37.50.20220106-2), binutils-common (= 2.37.50.20220106-2), binutils-x86-64-linux-gnu (= 2.37.50.20220106-2), bsdextrautils (= 2.37.2-6), bsdutils (= 1:2.37.2-6), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-14), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debian-archive-keyring (= 2021.1.1), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-14), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-14), gcc-11-base (= 11.2.0-14), gettext (= 0.21-4), gettext-base (= 0.21-4), gpgv (= 2.2.27-3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapt-pkg6.0 (= 2.3.14), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-14), libatomic1 (= 11.2.0-14), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37.50.20220106-2), libblkid1 (= 2.37.2-6), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-2), libc-dev-bin (= 2.33-2), libc6 (= 2.33-2), libc6-dev (= 2.33-2), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-14), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37.50.20220106-2), libctf0 (= 2.37.50.20220106-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4), libdisorder0 (= 0.0.2+git20130809.8062ee1-4), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libffi8 (= 3.4.2-3), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-14), libgcc-s1 (= 11.2.0-14), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3), libgnutls30 (= 3.7.2-5), libgomp1 (= 11.2.0-14), libgpg-error0 (= 1.43-2), libgssapi-krb5-2 (= 1.18.3-7), libhogweed6 (= 3.7.3-1), libicu67 (= 67.1-7), libidn2-0 (= 2.3.2-2), libisl23 (= 0.24-2), libitm1 (= 11.2.0-14), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-14), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-6), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.7.3-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.0-6), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.5-1), libquadmath0 (= 11.2.0-14), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsemanage-common (= 3.3-1), libsemanage2 (= 3.3-1+b1), libsepol2 (= 3.3-1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-6), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-14), libstdc++6 (= 11.2.0-14), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.2-3), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3-1), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-14), libubsan1 (= 11.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 250.2-3), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-6), libxml2 (= 2.9.12+dfsg-5+b1), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-1), ncurses-bin (= 6.3-1), passwd (= 1:4.8.1-2), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-6), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1634112083" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsmithwaterman-dev_0.0+git20160702.2610e25-12_armel.deb --------------------------------------------------------- new Debian package, version 2.0. size 37884 bytes: control archive=1152 bytes. 901 bytes, 20 lines control 855 bytes, 11 lines md5sums Package: libsmithwaterman-dev Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 142 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libdisorder-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (devel) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This is the development package containing the statically linked library and the header files. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/include/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/include/smithwaterman/ -rw-r--r-- root/root 4545 2021-10-13 08:01 ./usr/include/smithwaterman/BandedSmithWaterman.h -rw-r--r-- root/root 1040 2021-10-13 08:01 ./usr/include/smithwaterman/IndelAllele.h -rw-r--r-- root/root 882 2021-10-13 08:01 ./usr/include/smithwaterman/LeftAlign.h -rw-r--r-- root/root 1716 2021-10-13 08:01 ./usr/include/smithwaterman/Mosaik.h -rw-r--r-- root/root 211 2021-10-13 08:01 ./usr/include/smithwaterman/Repeats.h -rw-r--r-- root/root 3970 2021-10-13 08:01 ./usr/include/smithwaterman/SmithWatermanGotoh.h -rw-r--r-- root/root 470 2021-10-13 08:01 ./usr/include/smithwaterman/convert.h drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 111470 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/libsmithwaterman.a lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/libsmithwaterman.so -> libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/pkgconfig/ -rw-r--r-- root/root 264 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/pkgconfig/libsmithwaterman.pc drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/ -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/copyright libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_armel.deb ------------------------------------------------------------- new Debian package, version 2.0. size 398296 bytes: control archive=572 bytes. 464 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsmithwaterman0-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 412 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsmithwaterman0 Build-Ids: e3dccee8b8671122be15cfea7854f3f772297b7d drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 410832 2021-10-13 08:01 ./usr/lib/debug/.build-id/e3/dccee8b8671122be15cfea7854f3f772297b7d.debug drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0-dbgsym -> libsmithwaterman0 libsmithwaterman0_0.0+git20160702.2610e25-12_armel.deb ------------------------------------------------------ new Debian package, version 2.0. size 32152 bytes: control archive=1008 bytes. 828 bytes, 19 lines control 320 bytes, 4 lines md5sums 66 bytes, 1 lines shlibs 65 bytes, 2 lines triggers Package: libsmithwaterman0 Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 92 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (lib) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This package contains the dynamic library. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0 -> libsmithwaterman.so.0.0.0 -rw-r--r-- root/root 75108 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabi/libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/ -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/copyright drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/man/man1/ -rw-r--r-- root/root 831 2021-10-13 08:01 ./usr/share/man/man1/smithwaterman.1.gz smithwaterman-dbgsym_0.0+git20160702.2610e25-12_armel.deb --------------------------------------------------------- new Debian package, version 2.0. size 63388 bytes: control archive=556 bytes. 434 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: smithwaterman-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 77 Depends: smithwaterman (= 0.0+git20160702.2610e25-12) Section: debug Priority: optional Description: debug symbols for smithwaterman Build-Ids: 9483135225c10d34ccb5166524cb9e6285378cee drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/94/ -rw-r--r-- root/root 68400 2021-10-13 08:01 ./usr/lib/debug/.build-id/94/83135225c10d34ccb5166524cb9e6285378cee.debug drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman-dbgsym -> smithwaterman smithwaterman_0.0+git20160702.2610e25-12_armel.deb -------------------------------------------------- new Debian package, version 2.0. size 12548 bytes: control archive=932 bytes. 830 bytes, 16 lines control 444 bytes, 6 lines md5sums Package: smithwaterman Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 50 Depends: libc6 (>= 2.4), libdisorder0 (>= 0.0.2), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/bin/ -rwxr-xr-x root/root 18048 2021-10-13 08:01 ./usr/bin/smithwaterman drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman/ -rw-r--r-- root/root 278 2021-10-13 08:01 ./usr/share/doc/smithwaterman/README.test -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/smithwaterman/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/smithwaterman/copyright drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman/examples/ -rw-r--r-- root/root 17911 2016-07-02 19:45 ./usr/share/doc/smithwaterman/examples/examples.txt -rw-r--r-- root/root 580 2021-10-13 08:01 ./usr/share/doc/smithwaterman/run-unit-test lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [546 B] Get:5 copy:/<>/apt_archive ./ Packages [635 B] Fetched 2144 B in 0s (82.1 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 101 newly installed, 0 to remove and 0 not upgraded. Need to get 7570 kB of archives. After this operation, 22.6 MB of additional disk space will be used. 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http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libio-prompt-tiny-perl all 0.003-1 [9150 B] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.120-1 [54.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.009-1 [11.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.634-1 [46.5 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.21-1 [50.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.26-1 [28.7 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-1+b2 [27.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.13-1 [13.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-1 [197 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.10-1 [91.0 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1 [35.5 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-5 [88.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7570 kB in 0s (26.5 MB/s) Selecting previously unselected package diffstat. (Reading database ... 21076 files and directories currently installed.) Preparing to unpack .../000-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../001-libassuan0_2.5.5-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../002-gpgconf_2.2.27-3_amd64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../003-libsqlite3-0_3.37.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.37.2-1) ... Selecting previously unselected package gpg. Preparing to unpack .../004-gpg_2.2.27-3_amd64.deb ... Unpacking gpg (2.2.27-3) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../005-libaliased-perl_0.34-1.1_all.deb ... Unpacking libaliased-perl (0.34-1.1) ... Selecting previously unselected package libapt-pkg-perl. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 13912 Build-Time: 38 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 36 Job: libsmithwaterman_0.0+git20160702.2610e25-12 Lintian: pass Machine Architecture: amd64 Package: libsmithwaterman Package-Time: 87 Source-Version: 0.0+git20160702.2610e25-12 Space: 13912 Status: successful Version: 0.0+git20160702.2610e25-12 -------------------------------------------------------------------------------- Finished at 2022-01-16T02:20:57Z Build needed 00:01:27, 13912k disk space