sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +=====================================================================================+ | libsmithwaterman 0.0+git20160702.2610e25-12 (armhf) Sun, 04 Sep 2022 00:20:55 +0000 | +=====================================================================================+ Package: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Source Version: 0.0+git20160702.2610e25-12 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-15df3b51-4afc-4861-bc80-fe9bf0b20229' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-xSMP6f/resolver-nkdlpV' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main armhf Packages [8963 kB] Fetched 8963 kB in 1s (6330 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libsmithwaterman' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libsmithwaterman.git Please use: git clone https://salsa.debian.org/med-team/libsmithwaterman.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 33.4 kB of source archives. Get:1 http://localhost:3142/debian sid/main libsmithwaterman 0.0+git20160702.2610e25-12 (dsc) [2337 B] Get:2 http://localhost:3142/debian sid/main libsmithwaterman 0.0+git20160702.2610e25-12 (tar) [24.9 kB] Get:3 http://localhost:3142/debian sid/main libsmithwaterman 0.0+git20160702.2610e25-12 (diff) [6212 B] Fetched 33.4 kB in 2s (19.5 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libsmithwaterman-xSMP6f/libsmithwaterman-0.0+git20160702.2610e25' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-xSMP6f' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [417 B] Get:5 copy:/<>/apt_archive ./ Packages [507 B] Fetched 1881 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libdisorder-dev:armhf libdisorder0:armhf libelf1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu71 libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:armhf libnsl2:armhf libpipeline1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sensible-utils systemd ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf krb5-doc:armhf krb5-user:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 policykit-1 Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl krb5-locales:armhf libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libdisorder-dev:armhf libdisorder0:armhf libelf1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu71 libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:armhf libnsl2:armhf libpipeline1 libssl3:armhf libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armhf sensible-utils systemd ucf 0 upgraded, 108 newly installed, 0 to remove and 0 not upgraded. Need to get 90.1 MB of archives. After this operation, 346 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian sid/main amd64 libargon2-1 amd64 0~20171227-0.3 [20.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 dmsetup amd64 2:1.02.185-1 [92.7 kB] Get:4 http://localhost:3142/debian sid/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-1 [143 kB] Get:5 http://localhost:3142/debian sid/main amd64 libjson-c5 amd64 0.16-1 [44.0 kB] Get:6 http://localhost:3142/debian sid/main amd64 libcryptsetup12 amd64 2:2.5.0-2 [256 kB] Get:7 http://localhost:3142/debian sid/main amd64 libfdisk1 amd64 2.38.1-1 [250 kB] Get:8 http://localhost:3142/debian sid/main amd64 libkmod2 amd64 30+20220630-3 [59.6 kB] Get:9 http://localhost:3142/debian sid/main amd64 libapparmor1 amd64 3.0.7-1 [103 kB] Get:10 http://localhost:3142/debian sid/main amd64 libip4tc2 amd64 1.8.8-1 [34.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libsystemd-shared amd64 251.4-3 [1698 kB] Get:12 http://localhost:3142/debian sid/main amd64 systemd amd64 251.4-3 [2901 kB] Get:13 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:16 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:17 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:18 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:19 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:20 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:21 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1 [145 kB] Get:22 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-2 [39.4 kB] Get:23 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-2 [1413 kB] Get:24 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:25 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:26 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:27 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:28 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:29 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:30 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.38.90.20220713-2 [3174 kB] Get:31 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf-base amd64 12.2.0-1cross1 [208 kB] Get:32 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [8667 kB] Get:33 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:12.2.0-1 [17.2 kB] Get:34 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-1cross1 [203 kB] Get:36 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.34-3cross1 [1073 kB] Get:37 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 12.2.0-1cross1 [36.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 12.2.0-1cross1 [94.8 kB] Get:39 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 12.2.0-1cross1 [6768 B] Get:40 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 12.2.0-1cross1 [2113 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 12.2.0-1cross1 [477 kB] Get:42 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 12.2.0-1cross1 [855 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armhf-cross all 12.2.0-1cross1 [742 kB] Get:44 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [17.0 MB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:12.2.0-1 [1464 B] Get:46 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 5.18.16-1cross1 [1703 kB] Get:47 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.34-3cross1 [1411 kB] Get:48 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armhf-cross all 12.2.0-1cross1 [2036 kB] Get:49 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [9597 kB] Get:50 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:12.2.0-1 [1180 B] Get:51 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:52 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:54 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:55 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:57 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:58 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:59 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:60 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:64 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:65 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:66 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:67 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB] Get:68 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.9.1 [196 kB] Get:69 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:70 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:72 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:73 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:74 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:75 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-2 [179 kB] Get:76 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:78 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:79 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:80 http://localhost:3142/debian sid/main amd64 debhelper all 13.9.1 [1071 kB] Get:81 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.3.0-5 [209 kB] Get:82 http://localhost:3142/debian sid/main armhf gcc-12-base armhf 12.2.0-1 [208 kB] Get:83 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 12.2.0-1 [36.6 kB] Get:84 http://localhost:3142/debian sid/main armhf libc6 armhf 2.34-7 [2388 kB] Get:85 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.3.0-5 [1971 kB] Get:86 http://localhost:3142/debian sid/main armhf libatomic1 armhf 12.2.0-1 [6992 B] Get:87 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 5.19.6-1 [1591 kB] Get:88 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.28-2 [96.2 kB] Get:89 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.28-2 [125 kB] Get:90 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.46.5-2 [74.8 kB] Get:91 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20-1 [62.8 kB] Get:92 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20-1 [108 kB] Get:93 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-1 [14.7 kB] Get:94 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.5-2 [1678 kB] Get:95 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20-1 [320 kB] Get:96 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20-1 [144 kB] Get:97 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB] Get:98 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:99 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB] Get:100 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:101 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.34-7 [1446 kB] Get:102 http://localhost:3142/debian sid/main armhf libdisorder0 armhf 0.0.2+git20130809.8062ee1-4 [4812 B] Get:103 http://localhost:3142/debian sid/main armhf libdisorder-dev armhf 0.0.2+git20130809.8062ee1-4 [4432 B] Get:104 http://localhost:3142/debian sid/main armhf libgomp1 armhf 12.2.0-1 [97.0 kB] Get:105 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 12.2.0-1 [519 kB] Get:106 http://localhost:3142/debian sid/main armhf libubsan1 armhf 12.2.0-1 [856 kB] Get:107 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.3.0-5 [709 kB] Get:108 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.3.0-5 [1981 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 90.1 MB in 0s (198 MB/s) Selecting previously unselected package libargon2-1:amd64. (Reading database ... 13614 files and directories currently installed.) Preparing to unpack .../000-libargon2-1_0~20171227-0.3_amd64.deb ... Unpacking libargon2-1:amd64 (0~20171227-0.3) ... Selecting previously unselected package dmsetup. Preparing to unpack .../001-dmsetup_2%3a1.02.185-1_amd64.deb ... Unpacking dmsetup (2:1.02.185-1) ... Selecting previously unselected package libdevmapper1.02.1:amd64. Preparing to unpack .../002-libdevmapper1.02.1_2%3a1.02.185-1_amd64.deb ... Unpacking libdevmapper1.02.1:amd64 (2:1.02.185-1) ... Selecting previously unselected package libjson-c5:amd64. Preparing to unpack .../003-libjson-c5_0.16-1_amd64.deb ... Unpacking libjson-c5:amd64 (0.16-1) ... Selecting previously unselected package libcryptsetup12:amd64. Preparing to unpack .../004-libcryptsetup12_2%3a2.5.0-2_amd64.deb ... Unpacking libcryptsetup12:amd64 (2:2.5.0-2) ... Selecting previously unselected package libfdisk1:amd64. Preparing to unpack .../005-libfdisk1_2.38.1-1_amd64.deb ... 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Unpacking sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libip4tc2:amd64 (1.8.8-1) ... Setting up libpipeline1:amd64 (1.5.6-2) ... Setting up libicu71:amd64 (71.1-3) ... Setting up gcc-11-base:armhf (11.3.0-5) ... Setting up libfile-which-perl (1.27-1) ... Setting up libapparmor1:amd64 (3.0.7-1) ... Setting up libc6-armhf-cross (2.34-3cross1) ... Setting up gcc-12-cross-base (12.2.0-1cross1) ... Setting up bsdextrautils (2.38.1-1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-s1-armhf-cross (12.2.0-1cross1) ... Setting up libargon2-1:amd64 (0~20171227-0.3) ... Setting up libdebhelper-perl (13.9.1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:armhf (5.19.6-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libatomic1-armhf-cross (12.2.0-1cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:armhf (12.2.0-1) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libstdc++6-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf-base:amd64 (12.2.0-1cross1) ... Setting up linux-libc-dev-armhf-cross (5.18.16-1cross1) ... Setting up autopoint (0.21-9) ... Setting up libubsan1-armhf-cross (12.2.0-1cross1) ... Setting up d-shlibs (0.104) ... Setting up autoconf (2.71-2) ... Setting up libfdisk1:amd64 (2.38.1-1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up binutils-arm-linux-gnueabihf (2.38.90.20220713-2) ... Setting up libelf1:amd64 (0.187-2) ... Setting up libjson-c5:amd64 (0.16-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libkmod2:amd64 (30+20220630-3) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (12.2.0-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libasan8-armhf-cross (12.2.0-1cross1) ... Setting up gettext (0.21-9) ... Setting up libtool (2.4.7-4) ... Setting up libc6-dev-armhf-cross (2.34-3cross1) ... Setting up cpp-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up dh-autoreconf (20) ... Setting up libsystemd-shared:amd64 (251.4-3) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up libgcc-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up g++-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-1) ... Setting up dmsetup (2:1.02.185-1) ... Setting up libcryptsetup12:amd64 (2:2.5.0-2) ... Setting up systemd (251.4-3) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libgcc-s1:armhf (12.2.0-1) ... Setting up libc6:armhf (2.34-7) ... Setting up libstdc++6:armhf (12.2.0-1) ... Setting up libdisorder0:armhf (0.0.2+git20130809.8062ee1-4) ... Setting up libkeyutils1:armhf (1.6.3-1) ... Setting up libssl3:armhf (3.0.5-2) ... Setting up debhelper (13.9.1) ... Setting up libcrypt1:armhf (1:4.4.28-2) ... Setting up libcom-err2:armhf (1.46.5-2) ... Setting up libgomp1:armhf (12.2.0-1) ... Setting up libasan6:armhf (11.3.0-5) ... Setting up libkrb5support0:armhf (1.20-1) ... Setting up libatomic1:armhf (12.2.0-1) ... Setting up libk5crypto3:armhf (1.20-1) ... Setting up libdisorder-dev:armhf (0.0.2+git20130809.8062ee1-4) ... Setting up libubsan1:armhf (12.2.0-1) ... Setting up libgcc-11-dev:armhf (11.3.0-5) ... Setting up libcrypt-dev:armhf (1:4.4.28-2) ... Setting up libkrb5-3:armhf (1.20-1) ... Setting up libgssapi-krb5-2:armhf (1.20-1) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.34-7) ... Setting up libstdc++-11-dev:armhf (11.3.0-5) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-11_11.3.0-5 g++-12_12.2.0-1 gcc-11_11.3.0-5 gcc-12_12.2.0-1 libc6-dev_2.34-7 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-armhf-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-armhf-cross_12.2.0-1cross1 linux-libc-dev_5.19.6-1 Package versions: adduser_3.128 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2 binutils-arm-linux-gnueabihf_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:12.2.0-1 cpp-11_11.3.0-5 cpp-12_12.2.0-1 cpp-12-arm-linux-gnueabihf_12.2.0-1cross1 cpp-arm-linux-gnueabihf_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-armhf_12.9 d-shlibs_0.104 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dmsetup_2:1.02.185-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-5 g++-12_12.2.0-1 g++-12-arm-linux-gnueabihf_12.2.0-1cross1 g++-arm-linux-gnueabihf_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-5 gcc-11-base_11.3.0-5 gcc-12_12.2.0-1 gcc-12-arm-linux-gnueabihf_12.2.0-1cross1 gcc-12-arm-linux-gnueabihf-base_12.2.0-1cross1 gcc-12-base_12.2.0-1 gcc-12-cross-base_12.2.0-1cross1 gcc-9-base_9.5.0-2 gcc-arm-linux-gnueabihf_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5 libasan8_12.2.0-1 libasan8-armhf-cross_12.2.0-1cross1 libatomic1_12.2.0-1 libatomic1-armhf-cross_12.2.0-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38.1-1 libbz2-1.0_1.0.8-5 libc-bin_2.34-7 libc-dev-bin_2.34-7 libc6_2.34-7 libc6-armhf-cross_2.34-3cross1 libc6-dev_2.34-7 libc6-dev-armhf-cross_2.34-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdevmapper1.02.1_2:1.02.185-1 libdisorder-dev_0.0.2+git20130809.8062ee1-4 libdisorder0_0.0.2+git20130809.8062ee1-4 libdpkg-perl_1.21.9 libelf1_0.187-2 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-5 libgcc-12-dev_12.2.0-1 libgcc-12-dev-armhf-cross_12.2.0-1cross1 libgcc-s1_12.2.0-1 libgcc-s1-armhf-cross_12.2.0-1cross1 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1+b1 libgdbm6_1.23-1+b1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgomp1-armhf-cross_12.2.0-1cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 libhogweed6_3.8.1-2 libicu71_71.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libip4tc2_1.8.8-1 libisl23_0.25-1 libitm1_12.2.0-1 libjson-c5_0.16-1 libk5crypto3_1.20-1 libkeyutils1_1.6.3-1 libkmod2_30+20220630-3 libkrb5-3_1.20-1 libkrb5support0_1.20-1 liblocale-gettext-perl_1.07-4+b2 liblsan0_12.2.0-1 liblz4-1_1.9.4-1 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38.1-1 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-2 libpam-modules-bin_1.5.2-2 libpam-runtime_1.5.2-2 libpam0g_1.5.2-2 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libpipeline1_1.5.6-2 libquadmath0_12.2.0-1 libseccomp2_2.5.4-1+b1 libselinux1_3.4-1+b1 libsemanage-common_3.4-1 libsemanage2_3.4-1+b1 libsepol2_3.4-2 libsmartcols1_2.38.1-1 libss2_1.46.5-2 libssl3_3.0.5-2 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-armhf-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-armhf-cross_12.2.0-1cross1 libsub-override-perl_0.09-3 libsystemd-shared_251.4-3 libsystemd0_251.4-3 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-4 libtsan0_11.3.0-5 libtsan2_12.2.0-1 libubsan1_12.2.0-1 libubsan1-armhf-cross_12.2.0-1cross1 libuchardet0_0.0.7-1 libudev1_251.4-3 libunistring2_1.0-1 libuuid1_2.38.1-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-2 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.5.2+dfsg-1 linux-libc-dev_5.19.6-1 linux-libc-dev-armhf-cross_5.18.16-1cross1 login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 mount_2.38.1-1 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_251.4-3 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libsmithwaterman Binary: libsmithwaterman0, libsmithwaterman-dev, smithwaterman Architecture: any Version: 0.0+git20160702.2610e25-12 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/ekg/smithwaterman Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/libsmithwaterman Vcs-Git: https://salsa.debian.org/med-team/libsmithwaterman.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), d-shlibs, libdisorder-dev Package-List: libsmithwaterman-dev deb libdevel optional arch=any libsmithwaterman0 deb libs optional arch=any smithwaterman deb science optional arch=any Checksums-Sha1: 6b131fcd61fdcbd2d86ac7ea415983caf3a0e03e 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 5426e9515a47f3fc38f4fb91999c784ea3ac9331 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Checksums-Sha256: 6266f043c8a12cad8b1309f620c180fc422a1e9ee9df0163691652fa523f5bd3 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz d37cebbe58fa8ab750eff71dcf0ddafe63895ecc254e52c17eb34dcb746b681b 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz Files: 75f2ad1f67ed481fcd8b8a4178950e5c 24856 libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz 8ed7f78831dbbd00b613afb87724010a 6212 libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz -----BEGIN PGP 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made Wed Oct 13 08:03:39 2021 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./libsmithwaterman_0.0+git20160702.2610e25-12.dsc dpkg-source: info: extracting libsmithwaterman in /<> dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25-12.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-15df3b51-4afc-4861-bc80-fe9bf0b20229 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libsmithwaterman dpkg-buildpackage: info: source version 0.0+git20160702.2610e25-12 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean --no-parallel dh_clean debian/rules binary-arch dh binary-arch --no-parallel dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: warning: The macro `AC_PROG_LIBTOOL' is obsolete. configure.ac:30: You should run autoupdate. config/libtool.m4:100: AC_PROG_LIBTOOL is expanded from... configure.ac:30: the top level configure.ac:51: warning: The macro `AC_HEADER_STDC' is obsolete. configure.ac:51: You should run autoupdate. ./lib/autoconf/headers.m4:704: AC_HEADER_STDC is expanded from... configure.ac:51: the top level configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/arm-linux-gnueabihf --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=arm-linux-gnueabihf configure: loading site script /etc/dpkg-cross/cross-config.armhf checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for arm-linux-gnueabihf-strip... arm-linux-gnueabihf-strip checking for a race-free mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1000' is supported by ustar format... yes checking whether GID '1000' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... arm-unknown-linux-gnueabihf checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for arm-linux-gnueabihf-gcc... arm-linux-gnueabihf-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether arm-linux-gnueabihf-gcc accepts -g... yes checking for arm-linux-gnueabihf-gcc option to enable C11 features... none needed checking whether arm-linux-gnueabihf-gcc understands -c and -o together... yes checking dependency style of arm-linux-gnueabihf-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by arm-linux-gnueabihf-gcc... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/arm-linux-gnueabihf-nm -B checking the name lister (/usr/bin/arm-linux-gnueabihf-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to arm-unknown-linux-gnueabihf format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/arm-linux-gnueabihf/bin/ld option to reload object files... -r checking for arm-linux-gnueabihf-file... no checking for file... file configure: WARNING: using cross tools not prefixed with host triplet checking for arm-linux-gnueabihf-objdump... arm-linux-gnueabihf-objdump checking how to recognize dependent libraries... pass_all checking for arm-linux-gnueabihf-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for arm-linux-gnueabihf-ar... arm-linux-gnueabihf-ar checking for archiver @FILE support... @ checking for arm-linux-gnueabihf-strip... (cached) arm-linux-gnueabihf-strip checking for arm-linux-gnueabihf-ranlib... arm-linux-gnueabihf-ranlib checking command to parse /usr/bin/arm-linux-gnueabihf-nm -B output from arm-linux-gnueabihf-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for arm-linux-gnueabihf-mt... no checking for mt... no checking if : is a manifest tool... no checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if arm-linux-gnueabihf-gcc supports -fno-rtti -fno-exceptions... no checking for arm-linux-gnueabihf-gcc option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-gcc PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-gcc static flag -static works... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... yes checking if arm-linux-gnueabihf-gcc supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-gcc linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for arm-linux-gnueabihf-g++... arm-linux-gnueabihf-g++ checking whether the compiler supports GNU C++... yes checking whether arm-linux-gnueabihf-g++ accepts -g... yes checking for arm-linux-gnueabihf-g++ option to enable C++11 features... none needed checking dependency style of arm-linux-gnueabihf-g++... none checking how to run the C++ preprocessor... arm-linux-gnueabihf-g++ -E checking for ld used by arm-linux-gnueabihf-g++... /usr/arm-linux-gnueabihf/bin/ld checking if the linker (/usr/arm-linux-gnueabihf/bin/ld) is GNU ld... yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking for arm-linux-gnueabihf-g++ option to produce PIC... -fPIC -DPIC checking if arm-linux-gnueabihf-g++ PIC flag -fPIC -DPIC works... yes checking if arm-linux-gnueabihf-g++ static flag -static works... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... yes checking if arm-linux-gnueabihf-g++ supports -c -o file.o... (cached) yes checking whether the arm-linux-gnueabihf-g++ linker (/usr/arm-linux-gnueabihf/bin/ld) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 16912: AX_CXXFLAGS: command not found checking for egrep... (cached) /bin/grep -E checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libsmithwaterman.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-am make[2]: Entering directory '/<>' arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o smithwaterman.o smithwaterman.cpp /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-BandedSmithWaterman.lo `test -f 'BandedSmithWaterman.cpp' || echo './'`BandedSmithWaterman.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-BandedSmithWaterman.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -o libsmithwaterman_la-BandedSmithWaterman.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-IndelAllele.lo `test -f 'IndelAllele.cpp' || echo './'`IndelAllele.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-IndelAllele.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -o libsmithwaterman_la-IndelAllele.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-LeftAlign.lo `test -f 'LeftAlign.cpp' || echo './'`LeftAlign.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-LeftAlign.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -o libsmithwaterman_la-LeftAlign.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-Repeats.lo `test -f 'Repeats.cpp' || echo './'`Repeats.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-Repeats.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -o libsmithwaterman_la-Repeats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-SmithWatermanGotoh.lo `test -f 'SmithWatermanGotoh.cpp' || echo './'`SmithWatermanGotoh.cpp libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-SmithWatermanGotoh.o libtool: compile: arm-linux-gnueabihf-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -o libsmithwaterman_la-SmithWatermanGotoh.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libsmithwaterman.la -rpath /usr/lib/arm-linux-gnueabihf libsmithwaterman_la-BandedSmithWaterman.lo libsmithwaterman_la-IndelAllele.lo libsmithwaterman_la-LeftAlign.lo libsmithwaterman_la-Repeats.lo libsmithwaterman_la-SmithWatermanGotoh.lo libtool: link: arm-linux-gnueabihf-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/arm-linux-gnueabihf/12/../../../../arm-linux-gnueabihf/lib/crti.o /usr/lib/gcc-cross/arm-linux-gnueabihf/12/crtbeginS.o .libs/libsmithwaterman_la-BandedSmithWaterman.o .libs/libsmithwaterman_la-IndelAllele.o .libs/libsmithwaterman_la-LeftAlign.o .libs/libsmithwaterman_la-Repeats.o .libs/libsmithwaterman_la-SmithWatermanGotoh.o -L/usr/lib/gcc-cross/arm-linux-gnueabihf/12 -L/usr/lib/gcc-cross/arm-linux-gnueabihf/12/../../../../arm-linux-gnueabihf/lib -L/lib/arm-linux-gnueabihf -L/usr/lib/arm-linux-gnueabihf -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/arm-linux-gnueabihf/12/crtendS.o /usr/lib/gcc-cross/arm-linux-gnueabihf/12/../../../../arm-linux-gnueabihf/lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsmithwaterman.so.0 -o .libs/libsmithwaterman.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so.0" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so.0") libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so") libtool: link: arm-linux-gnueabihf-ar cr .libs/libsmithwaterman.a libsmithwaterman_la-BandedSmithWaterman.o libsmithwaterman_la-IndelAllele.o libsmithwaterman_la-LeftAlign.o libsmithwaterman_la-Repeats.o libsmithwaterman_la-SmithWatermanGotoh.o libtool: link: arm-linux-gnueabihf-ranlib .libs/libsmithwaterman.a libtool: link: ( cd ".libs" && rm -f "libsmithwaterman.la" && ln -s "../libsmithwaterman.la" "libsmithwaterman.la" ) /bin/bash ./libtool --tag=CXX --mode=link arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o smithwaterman smithwaterman.o libsmithwaterman.la -ldisorder libtool: link: arm-linux-gnueabihf-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/smithwaterman smithwaterman.o ./.libs/libsmithwaterman.so -ldisorder make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libsmithwaterman-0.0\+git20160702.2610e25/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' /bin/bash ./libtool --mode=install /usr/bin/install -c libsmithwaterman.la '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/libsmithwaterman.so.0.0.0 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0.0.0 libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so.0 || { rm -f libsmithwaterman.so.0 && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so.0; }; }) libtool: install: (cd /<>/debian/tmp/usr/lib/arm-linux-gnueabihf && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so || { rm -f libsmithwaterman.so && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so; }; }) libtool: install: /usr/bin/install -c .libs/libsmithwaterman.lai /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.la libtool: install: /usr/bin/install -c .libs/libsmithwaterman.a /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.a libtool: install: chmod 644 /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.a libtool: install: arm-linux-gnueabihf-ranlib /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.a libtool: warning: remember to run 'libtool --finish /usr/lib/arm-linux-gnueabihf' /bin/mkdir -p '/<>/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c smithwaterman '/<>/debian/tmp/usr/bin' libtool: warning: 'libsmithwaterman.la' has not been installed in '/usr/lib/arm-linux-gnueabihf' libtool: install: /usr/bin/install -c .libs/smithwaterman /<>/debian/tmp/usr/bin/smithwaterman /bin/mkdir -p '/<>/debian/tmp/usr/include/smithwaterman' /usr/bin/install -c -m 644 BandedSmithWaterman.h IndelAllele.h LeftAlign.h Mosaik.h Repeats.h SmithWatermanGotoh.h convert.h '/<>/debian/tmp/usr/include/smithwaterman' /bin/mkdir -p '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' /usr/bin/install -c -m 644 libsmithwaterman.pc '/<>/debian/tmp/usr/lib/arm-linux-gnueabihf/pkgconfig' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/arm-linux-gnueabihf/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabihf install -d -m 755 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.a debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabihf mv debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabihf mv /<>/debian/tmp/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0.0.0 debian/libsmithwaterman0/usr/lib/arm-linux-gnueabihf PKGDEV=libsmithwaterman-dev PKGSHL=libsmithwaterman0 install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabihf/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/arm-linux-gnueabihf/pkgconfig find debian -name "lib*.la" -delete make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol shannon_H used by debian/libsmithwaterman0/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libsmithwaterman0/usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: debian/smithwaterman/usr/bin/smithwaterman contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/smithwaterman/usr/bin/smithwaterman was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsmithwaterman-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libsmithwaterman0' in '../libsmithwaterman0_0.0+git20160702.2610e25-12_armhf.deb'. dpkg-deb: building package 'libsmithwaterman0-dbgsym' in '../libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_armhf.deb'. dpkg-deb: building package 'libsmithwaterman-dev' in '../libsmithwaterman-dev_0.0+git20160702.2610e25-12_armhf.deb'. dpkg-deb: building package 'smithwaterman' in '../smithwaterman_0.0+git20160702.2610e25-12_armhf.deb'. dpkg-deb: building package 'smithwaterman-dbgsym' in '../smithwaterman-dbgsym_0.0+git20160702.2610e25-12_armhf.deb'. dpkg-genbuildinfo --build=any -O../libsmithwaterman_0.0+git20160702.2610e25-12_armhf.buildinfo dpkg-genchanges --build=any -O../libsmithwaterman_0.0+git20160702.2610e25-12_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-09-04T00:21:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libsmithwaterman_0.0+git20160702.2610e25-12_armhf.changes: ---------------------------------------------------------- Format: 1.8 Date: Wed, 13 Oct 2021 10:01:23 +0200 Source: libsmithwaterman Binary: libsmithwaterman-dev libsmithwaterman0 libsmithwaterman0-dbgsym smithwaterman smithwaterman-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 0.0+git20160702.2610e25-12 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two strings or genomic sequence smithwaterman - determine similar regions between two strings or genomic sequence Closes: 984207 Changes: libsmithwaterman (0.0+git20160702.2610e25-12) unstable; urgency=medium . * Packaging update * Standards-Version: 4.6.0 (routine-update) * Apply multi-arch hints. + libsmithwaterman-dev, libsmithwaterman0: Add Multi-Arch: same. * Drop symbols file to reduce maintenance burden Closes: #984207 Checksums-Sha1: afe5a9c8c86e4a65488cd047530b46b5e3b11d4b 37928 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science optional smithwaterman_0.0+git20160702.2610e25-12_armhf.deb /<>/libsmithwaterman_0.0+git20160702.2610e25-12_armhf.changes.new could not be renamed to /<>/libsmithwaterman_0.0+git20160702.2610e25-12_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libsmithwaterman Binary: libsmithwaterman-dev libsmithwaterman0 libsmithwaterman0-dbgsym smithwaterman smithwaterman-dbgsym Architecture: armhf Version: 0.0+git20160702.2610e25-12 Checksums-Md5: 9dcf6200f0e599c1d9dcb0ee08c67802 37928 libsmithwaterman-dev_0.0+git20160702.2610e25-12_armhf.deb 61c2eb64cf060d6208a3ac8963988c1a 405792 libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_armhf.deb 734d1e4ed88d0d507809031e52472374 32788 libsmithwaterman0_0.0+git20160702.2610e25-12_armhf.deb 631dea1251ede30a95f303ee6cb5a2cf 62564 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508ced914fb036ea15ae1ac895631d5c1ea5b7238a643c17b4d65783eadf608a 32788 libsmithwaterman0_0.0+git20160702.2610e25-12_armhf.deb 99854b862eeb002abe41012879797cae3efa73f37251c868c8819d0e20426562 62564 smithwaterman-dbgsym_0.0+git20160702.2610e25-12_armhf.deb 534041021a607af5d3f9da212228496f6fc030fb025824a9487d7e4e2f2b7daf 12480 smithwaterman_0.0+git20160702.2610e25-12_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Sep 2022 00:21:38 +0000 Build-Path: /<> Installed-Build-Depends: adduser (= 3.128), apt (= 2.5.2), autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2), binutils (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), binutils-x86-64-linux-gnu (= 2.38.90.20220713-2), bsdextrautils (= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-5), cpp-12 (= 12.2.0-1), d-shlibs (= 0.104), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.9.1), debian-archive-keyring (= 2021.1.1), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dmsetup (= 2:1.02.185-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-1), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-5), gcc-11-base (= 11.3.0-5), gcc-12 (= 12.2.0-1), gcc-12-base (= 12.2.0-1), gettext (= 0.21-9), gettext-base (= 0.21-9), gpgv (= 2.2.35-3), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1), libapt-pkg6.0 (= 2.5.2), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan6 (= 11.3.0-5), libasan8 (= 12.2.0-1), libatomic1 (= 12.2.0-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38.1-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-7), libc-dev-bin (= 2.34-7), libc6 (= 2.34-7), libc6-dev (= 2.34-7), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9.1), libdevmapper1.02.1 (= 2:1.02.185-1), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4), libdisorder0 (= 0.0.2+git20130809.8062ee1-4), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-2), libfdisk1 (= 2.38.1-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5), libgcc-12-dev (= 12.2.0-1), libgcc-s1 (= 12.2.0-1), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1+b1), libgdbm6 (= 1.23-1+b1), libgmp10 (= 2:6.2.1+dfsg1-1), libgnutls30 (= 3.7.7-2), libgomp1 (= 12.2.0-1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libhogweed6 (= 3.8.1-2), libicu71 (= 71.1-3), libidn2-0 (= 2.3.3-1+b1), libip4tc2 (= 1.8.8-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblsan0 (= 12.2.0-1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnettle8 (= 3.8.1-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libquadmath0 (= 12.2.0-1), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1+b1), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38.1-1), libssl3 (= 3.0.5-2), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-3), libsystemd0 (= 251.4-3), libtasn1-6 (= 4.18.0-4), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libxml2 (= 2.9.14+dfsg-1+b1), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.6-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), mount (= 2.38.1-1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), passwd (= 1:4.11.1+dfsg1-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), systemd (= 251.4-3), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1634112083" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsmithwaterman-dev_0.0+git20160702.2610e25-12_armhf.deb --------------------------------------------------------- new Debian package, version 2.0. size 37928 bytes: control archive=1152 bytes. 901 bytes, 20 lines control 859 bytes, 11 lines md5sums Package: libsmithwaterman-dev Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 123 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12), libdisorder-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (devel) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This is the development package containing the statically linked library and the header files. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/include/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/include/smithwaterman/ -rw-r--r-- root/root 4545 2021-10-13 08:01 ./usr/include/smithwaterman/BandedSmithWaterman.h -rw-r--r-- root/root 1040 2021-10-13 08:01 ./usr/include/smithwaterman/IndelAllele.h -rw-r--r-- root/root 882 2021-10-13 08:01 ./usr/include/smithwaterman/LeftAlign.h -rw-r--r-- root/root 1716 2021-10-13 08:01 ./usr/include/smithwaterman/Mosaik.h -rw-r--r-- root/root 211 2021-10-13 08:01 ./usr/include/smithwaterman/Repeats.h -rw-r--r-- root/root 3970 2021-10-13 08:01 ./usr/include/smithwaterman/SmithWatermanGotoh.h -rw-r--r-- root/root 470 2021-10-13 08:01 ./usr/include/smithwaterman/convert.h drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/ -rw-r--r-- root/root 91310 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/libsmithwaterman.a lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/libsmithwaterman.so -> libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/ -rw-r--r-- root/root 264 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/pkgconfig/libsmithwaterman.pc drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/ -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman-dev/copyright libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-12_armhf.deb ------------------------------------------------------------- new Debian package, version 2.0. size 405792 bytes: control archive=576 bytes. 464 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsmithwaterman0-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 419 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-12) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsmithwaterman0 Build-Ids: 9bb6c90b631e54a6dfc15697f722a2acaede5114 drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/9b/ -rw-r--r-- root/root 418604 2021-10-13 08:01 ./usr/lib/debug/.build-id/9b/b6c90b631e54a6dfc15697f722a2acaede5114.debug drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0-dbgsym -> libsmithwaterman0 libsmithwaterman0_0.0+git20160702.2610e25-12_armhf.deb ------------------------------------------------------ new Debian package, version 2.0. size 32788 bytes: control archive=1012 bytes. 828 bytes, 19 lines control 322 bytes, 4 lines md5sums 66 bytes, 1 lines shlibs 67 bytes, 2 lines triggers Package: libsmithwaterman0 Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 84 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.5), libstdc++6 (>= 5.2) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (lib) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This package contains the dynamic library. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0 -> libsmithwaterman.so.0.0.0 -rw-r--r-- root/root 66924 2021-10-13 08:01 ./usr/lib/arm-linux-gnueabihf/libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/ -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/libsmithwaterman0/copyright drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/man/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/man/man1/ -rw-r--r-- root/root 831 2021-10-13 08:01 ./usr/share/man/man1/smithwaterman.1.gz smithwaterman-dbgsym_0.0+git20160702.2610e25-12_armhf.deb --------------------------------------------------------- new Debian package, version 2.0. size 62564 bytes: control archive=556 bytes. 434 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: smithwaterman-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 76 Depends: smithwaterman (= 0.0+git20160702.2610e25-12) Section: debug Priority: optional Description: debug symbols for smithwaterman Build-Ids: 55e94f8a0085e7fae87c78cfcadb7732cd7ad48f drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/lib/debug/.build-id/55/ -rw-r--r-- root/root 67528 2021-10-13 08:01 ./usr/lib/debug/.build-id/55/e94f8a0085e7fae87c78cfcadb7732cd7ad48f.debug drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman-dbgsym -> smithwaterman smithwaterman_0.0+git20160702.2610e25-12_armhf.deb -------------------------------------------------- new Debian package, version 2.0. size 12480 bytes: control archive=932 bytes. 831 bytes, 16 lines control 444 bytes, 6 lines md5sums Package: smithwaterman Source: libsmithwaterman Version: 0.0+git20160702.2610e25-12 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 98 Depends: libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. drwxr-xr-x root/root 0 2021-10-13 08:01 ./ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/bin/ -rwxr-xr-x root/root 67208 2021-10-13 08:01 ./usr/bin/smithwaterman drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman/ -rw-r--r-- root/root 278 2021-10-13 08:01 ./usr/share/doc/smithwaterman/README.test -rw-r--r-- root/root 1425 2021-10-13 08:01 ./usr/share/doc/smithwaterman/changelog.Debian.gz -rw-r--r-- root/root 1417 2021-10-13 08:01 ./usr/share/doc/smithwaterman/copyright drwxr-xr-x root/root 0 2021-10-13 08:01 ./usr/share/doc/smithwaterman/examples/ -rw-r--r-- root/root 17911 2016-07-02 19:45 ./usr/share/doc/smithwaterman/examples/examples.txt -rw-r--r-- root/root 580 2021-10-13 08:01 ./usr/share/doc/smithwaterman/run-unit-test lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [546 B] Get:5 copy:/<>/apt_archive ./ Packages [636 B] Fetched 2145 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 14.3 MB of archives. After this operation, 52.0 MB of additional disk space will be used. 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[37.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-3 [18.8 kB] Get:98 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:100 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:101 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:102 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:103 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:104 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-2 [11.9 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2 [13.7 kB] Get:107 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:108 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:109 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1 [17.5 kB] Get:110 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:111 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:112 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:113 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 4.025+ds-1 [103 kB] Get:114 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 4.025+ds-1 [104 kB] Get:115 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:116 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.25-1 [53.3 kB] Get:117 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:118 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2 [27.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5 [8656 B] Get:120 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:122 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:123 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2 [73.0 kB] Get:124 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:125 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:126 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:127 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB] Get:128 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:129 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:130 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:131 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:132 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:133 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.3 MB in 0s (105 MB/s) Selecting previously unselected package netbase. 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Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-1+b2) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-5) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:amd64 (3.39.2-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:amd64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:amd64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... 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Setting up libperlio-gzip-perl (0.20-1) ... Setting up readline-common (8.2~rc2-2) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.2~rc2-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.78-1) ... Setting up gpgconf (2.2.35-3) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up gpg (2.2.35-3) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... Processing triggers for man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 13896 Build-Time: 22 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 11 Job: libsmithwaterman_0.0+git20160702.2610e25-12 Lintian: pass Machine Architecture: amd64 Package: libsmithwaterman Package-Time: 43 Source-Version: 0.0+git20160702.2610e25-12 Space: 13896 Status: successful Version: 0.0+git20160702.2610e25-12 -------------------------------------------------------------------------------- Finished at 2022-09-04T00:21:38Z Build needed 00:00:43, 13896k disk space