sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +====================================================================================+ | libsmithwaterman 0.0+git20160702.2610e25-7 (s390x) Thu, 21 Mar 2019 21:17:55 +0000 | +====================================================================================+ Package: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Source Version: 0.0+git20160702.2610e25-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-78603215-c19b-4e00-a9c6-f12672b16df6' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [242 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-0210.00.pdiff [12.3 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-1409.56.pdiff [4068 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-2011.21.pdiff [7307 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-03-21-2011.21.pdiff [7307 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-0210.00.pdiff [4371 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-1409.56.pdiff [16.2 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-2011.21.pdiff [2657 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-03-21-2011.21.pdiff [2657 B] Get:10 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7976 kB] Fetched 8321 kB in 2s (5133 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libsmithwaterman' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libsmithwaterman.git Please use: git clone https://salsa.debian.org/med-team/libsmithwaterman.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 33.4 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-7 (dsc) [2280 B] Get:2 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-7 (tar) [24.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main libsmithwaterman 0.0+git20160702.2610e25-7 (diff) [6292 B] Fetched 33.4 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libsmithwaterman-8CnGYD/libsmithwaterman-0.0+git20160702.2610e25' with '<>' I: NOTICE: Log filtering will replace 'build/libsmithwaterman-8CnGYD' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-bkKOL2/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-bkKOL2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bkKOL2/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-bkKOL2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bkKOL2/apt_archive ./ Sources [361 B] Get:5 copy:/<>/resolver-bkKOL2/apt_archive ./ Packages [450 B] Fetched 1768 B in 0s (0 B/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 145 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bkKOL2/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [872 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-15 [2128 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-2cross1 [190 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-2cross1 [5937 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-2cross1 [185 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-7cross1 [1308 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.3.0-2cross1 [24.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.3.0-2cross1 [67.4 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.3.0-2cross1 [26.3 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.3.0-2cross1 [8088 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.3.0-2cross1 [353 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.3.0-2cross1 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.3.0-2cross1 [113 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-2cross1 [641 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6368 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.20-1cross1 [1227 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-7cross1 [2255 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-2cross1 [1483 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-2cross1 [6515 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 1s (70.1 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Unpacking crossbuild-essential-s390x (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.31.1-15) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-2cross1) ... Setting up libc6-s390x-cross (2.28-7cross1) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.3.0-2cross1) ... Setting up libatomic1-s390x-cross (8.3.0-2cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.20-1cross1) ... Setting up cross-config (2.6.15-2) ... Setting up cpp-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libitm1-s390x-cross (8.3.0-2cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (8.3.0-2cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:8.3.0-2cross1) ... Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ... Setting up libstdc++6-s390x-cross (8.3.0-2cross1) ... Setting up libasan5-s390x-cross (8.3.0-2cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (8.3.0-2cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.3.0-2cross1) ... Setting up gcc-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.3.0-2cross1) ... Setting up g++-8-s390x-linux-gnu (8.3.0-2cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-s390x-linux-gnu (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-s390x (12.6) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-bkKOL2/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-bkKOL2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bkKOL2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bkKOL2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bkKOL2/apt_archive ./ Sources [483 B] Get:5 copy:/<>/resolver-bkKOL2/apt_archive ./ Packages [571 B] Fetched 2017 B in 0s (111 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-bkKOL2/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15027 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, libdisorder-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), d-shlibs, libdisorder-dev dpkg-deb: building package 'sbuild-build-depends-libsmithwaterman-dummy' in '/<>/resolver-bkKOL2/apt_archive/sbuild-build-depends-libsmithwaterman-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libsmithwaterman-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-bkKOL2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bkKOL2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bkKOL2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bkKOL2/apt_archive ./ Sources [658 B] Get:5 copy:/<>/resolver-bkKOL2/apt_archive ./ Packages [737 B] Fetched 2358 B in 0s (0 B/s) Reading package lists... Reading package lists... Install libsmithwaterman build dependencies (apt-based resolver) ---------------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libdisorder-dev:s390x libdisorder0:s390x libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:s390x libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libbsd0 libc6:s390x libc6-dev:s390x libcroco3 libdisorder-dev:s390x libdisorder0:s390x libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgomp1:s390x libitm1:s390x libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtool libubsan1:s390x libuchardet0 linux-libc-dev:s390x m4 man-db po-debconf sbuild-build-depends-libsmithwaterman-dummy:s390x 0 upgraded, 44 newly installed, 0 to remove and 0 not upgraded. Need to get 18.8 MB of archives. After this operation, 89.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bkKOL2/apt_archive ./ sbuild-build-depends-libsmithwaterman-dummy 0.invalid.0 [892 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 d-shlibs all 0.84 [17.2 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-3 [190 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.3.0-3 [24.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-8 [2504 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.3.0-3 [391 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.3.0-3 [321 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.3.0-3 [8188 B] Get:36 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.28-2 [1155 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-8 [2269 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libdisorder0 s390x 0.0.2+git20130809.8062ee1-1 [4312 B] Get:39 http://debian.oregonstate.edu/debian unstable/main s390x libdisorder-dev s390x 0.0.2+git20130809.8062ee1-1 [4220 B] Get:40 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.3.0-3 [68.9 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.3.0-3 [26.7 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.3.0-3 [113 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-3 [641 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-3 [1503 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.8 MB in 0s (73.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15027 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package d-shlibs. Preparing to unpack .../13-d-shlibs_0.84_all.deb ... Unpacking d-shlibs (0.84) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../17-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../18-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../19-libelf1_0.176-1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1) ... Selecting previously unselected package dwz. Preparing to unpack .../20-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../21-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../22-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../23-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../24-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../25-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../26-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../27-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:s390x. Preparing to unpack .../28-gcc-8-base_8.3.0-3_s390x.deb ... Unpacking gcc-8-base:s390x (8.3.0-3) ... Selecting previously unselected package libgcc1:s390x. Preparing to unpack .../29-libgcc1_1%3a8.3.0-3_s390x.deb ... Unpacking libgcc1:s390x (1:8.3.0-3) ... Selecting previously unselected package libc6:s390x. Preparing to unpack .../30-libc6_2.28-8_s390x.deb ... Unpacking libc6:s390x (2.28-8) ... Selecting previously unselected package libstdc++6:s390x. Preparing to unpack .../31-libstdc++6_8.3.0-3_s390x.deb ... Unpacking libstdc++6:s390x (8.3.0-3) ... Selecting previously unselected package libasan5:s390x. Preparing to unpack .../32-libasan5_8.3.0-3_s390x.deb ... Unpacking libasan5:s390x (8.3.0-3) ... Selecting previously unselected package libatomic1:s390x. Preparing to unpack .../33-libatomic1_8.3.0-3_s390x.deb ... Unpacking libatomic1:s390x (8.3.0-3) ... Selecting previously unselected package linux-libc-dev:s390x. Preparing to unpack .../34-linux-libc-dev_4.19.28-2_s390x.deb ... Unpacking linux-libc-dev:s390x (4.19.28-2) ... Selecting previously unselected package libc6-dev:s390x. Preparing to unpack .../35-libc6-dev_2.28-8_s390x.deb ... Unpacking libc6-dev:s390x (2.28-8) ... Selecting previously unselected package libdisorder0:s390x. Preparing to unpack .../36-libdisorder0_0.0.2+git20130809.8062ee1-1_s390x.deb ... Unpacking libdisorder0:s390x (0.0.2+git20130809.8062ee1-1) ... Selecting previously unselected package libdisorder-dev:s390x. Preparing to unpack .../37-libdisorder-dev_0.0.2+git20130809.8062ee1-1_s390x.deb ... Unpacking libdisorder-dev:s390x (0.0.2+git20130809.8062ee1-1) ... Selecting previously unselected package libgomp1:s390x. Preparing to unpack .../38-libgomp1_8.3.0-3_s390x.deb ... Unpacking libgomp1:s390x (8.3.0-3) ... Selecting previously unselected package libitm1:s390x. Preparing to unpack .../39-libitm1_8.3.0-3_s390x.deb ... Unpacking libitm1:s390x (8.3.0-3) ... Selecting previously unselected package libubsan1:s390x. Preparing to unpack .../40-libubsan1_8.3.0-3_s390x.deb ... Unpacking libubsan1:s390x (8.3.0-3) ... Selecting previously unselected package libgcc-8-dev:s390x. Preparing to unpack .../41-libgcc-8-dev_8.3.0-3_s390x.deb ... Unpacking libgcc-8-dev:s390x (8.3.0-3) ... Selecting previously unselected package libstdc++-8-dev:s390x. Preparing to unpack .../42-libstdc++-8-dev_8.3.0-3_s390x.deb ... Unpacking libstdc++-8-dev:s390x (8.3.0-3) ... Selecting previously unselected package sbuild-build-depends-libsmithwaterman-dummy:s390x. Preparing to unpack .../43-sbuild-build-depends-libsmithwaterman-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-libsmithwaterman-dummy:s390x (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:s390x (4.19.28-2) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:s390x (8.3.0-3) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up d-shlibs (0.84) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:s390x (2.28-8) ... Setting up libc6-dev:s390x (2.28-8) ... Setting up libitm1:s390x (8.3.0-3) ... Setting up libdisorder0:s390x (0.0.2+git20130809.8062ee1-1) ... Setting up libgcc1:s390x (1:8.3.0-3) ... Setting up libgomp1:s390x (8.3.0-3) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:s390x (8.3.0-3) ... Setting up libdisorder-dev:s390x (0.0.2+git20130809.8062ee1-1) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libstdc++6:s390x (8.3.0-3) ... Setting up debhelper (12.1.1) ... Setting up libasan5:s390x (8.3.0-3) ... Setting up libubsan1:s390x (8.3.0-3) ... Setting up libgcc-8-dev:s390x (8.3.0-3) ... Setting up libstdc++-8-dev:s390x (8.3.0-3) ... Setting up sbuild-build-depends-libsmithwaterman-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-15 dpkg-dev_1.19.5 g++-8_8.3.0-3 gcc-8_8.3.0-3 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-s390x-cross_8.3.0-2cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.1 base-passwd_3.5.46 bash_5.0-2 binutils_2.31.1-15 binutils-common_2.31.1-15 binutils-s390x-linux-gnu_2.31.1-15 binutils-x86-64-linux-gnu_2.31.1-15 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-3 cpp-8-s390x-linux-gnu_8.3.0-2cross1 cpp-s390x-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-s390x_12.6 d-shlibs_0.84 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-2 dpkg_1.19.5 dpkg-cross_2.6.15-2 dpkg-dev_1.19.5 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-3 g++-8-s390x-linux-gnu_8.3.0-2cross1 g++-s390x-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-3 gcc-8-base_8.3.0-3 gcc-8-cross-base_8.3.0-2cross1 gcc-8-s390x-linux-gnu_8.3.0-2cross1 gcc-8-s390x-linux-gnu-base_8.3.0-2cross1 gcc-s390x-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-3 libasan5-s390x-cross_8.3.0-2cross1 libatomic1_8.3.0-3 libatomic1-s390x-cross_8.3.0-2cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-15 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-s390x-cross_2.28-7cross1 libc6-s390x-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-3 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.248 libdebian-dpkgcross-perl_2.6.15-2 libdisorder-dev_0.0.2+git20130809.8062ee1-1 libdisorder0_0.0.2+git20130809.8062ee1-1 libdpkg-perl_1.19.5 libelf1_0.176-1 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-3 libgcc-8-dev-s390x-cross_8.3.0-2cross1 libgcc1_1:8.3.0-3 libgcc1-s390x-cross_1:8.3.0-2cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.6-3 libgomp1_8.3.0-3 libgomp1-s390x-cross_8.3.0-2cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-3 libitm1-s390x-cross_8.3.0-2cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-3 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-3 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-5 libpipeline1_1.5.1-2 libquadmath0_8.3.0-3 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-3 libstdc++-8-dev-s390x-cross_8.3.0-2cross1 libstdc++6_8.3.0-3 libstdc++6-s390x-cross_8.3.0-2cross1 libsystemd0_241-2 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-3 libubsan1_8.3.0-3 libubsan1-s390x-cross_8.3.0-2cross1 libuchardet0_0.0.6-3 libudev1_241-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-s390x-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-5 perl-base_5.28.1-5 perl-modules-5.28_5.28.1-5 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-libsmithwaterman-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 tzdata_2018i-2 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Aug 13 11:21:26 2018 UTC gpgv: using RSA key 25E3FF2D7F469DBE7D0D4E50AFCFEC8E669CE1C2 gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./libsmithwaterman_0.0+git20160702.2610e25-7.dsc dpkg-source: info: extracting libsmithwaterman in /<>/libsmithwaterman-0.0+git20160702.2610e25 dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25.orig.tar.xz dpkg-source: info: unpacking libsmithwaterman_0.0+git20160702.2610e25-7.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying autoconf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-78603215-c19b-4e00-a9c6-f12672b16df6 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package libsmithwaterman dpkg-buildpackage: info: source version 0.0+git20160702.2610e25-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Graham Inggs dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x fakeroot debian/rules clean dh clean --no-parallel dh_clean debian/rules build-arch dh build-arch --no-parallel dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: couldn't open directory 'config': No such file or directory libtoolize: putting auxiliary files in AC_CONFIG_AUX_DIR, 'config'. libtoolize: copying file 'config/ltmain.sh' libtoolize: putting macros in AC_CONFIG_MACRO_DIRS, 'config'. libtoolize: copying file 'config/libtool.m4' libtoolize: copying file 'config/ltoptions.m4' libtoolize: copying file 'config/ltsugar.m4' libtoolize: copying file 'config/ltversion.m4' libtoolize: copying file 'config/lt~obsolete.m4' libtoolize: Consider adding '-I config' to ACLOCAL_AMFLAGS in Makefile.am. configure.ac:30: installing 'config/compile' configure.ac:30: installing 'config/config.guess' configure.ac:30: installing 'config/config.sub' configure.ac:18: installing 'config/install-sh' configure.ac:18: installing 'config/missing' Makefile.am: installing 'config/depcomp' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/s390x-linux-gnu --libexecdir=\${prefix}/lib/s390x-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=s390x-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for s390x-linux-gnu-strip... s390x-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking whether UID '1003' is supported by ustar format... yes checking whether GID '1003' is supported by ustar format... yes checking how to create a ustar tar archive... gnutar checking whether ln -s works... yes checking build system type... x86_64-pc-linux-gnu checking host system type... s390x-ibm-linux-gnu checking how to print strings... printf checking whether make supports the include directive... yes (GNU style) checking for s390x-linux-gnu-gcc... s390x-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether s390x-linux-gnu-gcc accepts -g... yes checking for s390x-linux-gnu-gcc option to accept ISO C89... none needed checking whether s390x-linux-gnu-gcc understands -c and -o together... yes checking dependency style of s390x-linux-gnu-gcc... none checking for a sed that does not truncate output... /bin/sed checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for fgrep... /bin/grep -F checking for ld used by s390x-linux-gnu-gcc... /usr/s390x-linux-gnu/bin/ld checking if the linker (/usr/s390x-linux-gnu/bin/ld) is GNU ld... yes checking for BSD- or MS-compatible name lister (nm)... /usr/bin/s390x-linux-gnu-nm -B checking the name lister (/usr/bin/s390x-linux-gnu-nm -B) interface... BSD nm checking the maximum length of command line arguments... 1572864 checking how to convert x86_64-pc-linux-gnu file names to s390x-ibm-linux-gnu format... func_convert_file_noop checking how to convert x86_64-pc-linux-gnu file names to toolchain format... func_convert_file_noop checking for /usr/s390x-linux-gnu/bin/ld option to reload object files... -r checking for s390x-linux-gnu-objdump... s390x-linux-gnu-objdump checking how to recognize dependent libraries... pass_all checking for s390x-linux-gnu-dlltool... no checking for dlltool... no checking how to associate runtime and link libraries... printf %s\n checking for s390x-linux-gnu-ar... s390x-linux-gnu-ar checking for archiver @FILE support... @ checking for s390x-linux-gnu-strip... (cached) s390x-linux-gnu-strip checking for s390x-linux-gnu-ranlib... s390x-linux-gnu-ranlib checking command to parse /usr/bin/s390x-linux-gnu-nm -B output from s390x-linux-gnu-gcc object... ok checking for sysroot... no checking for a working dd... /bin/dd checking how to truncate binary pipes... /bin/dd bs=4096 count=1 checking for s390x-linux-gnu-mt... no checking for mt... no checking if : is a manifest tool... no checking how to run the C preprocessor... s390x-linux-gnu-gcc -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for dlfcn.h... yes checking for objdir... .libs checking if s390x-linux-gnu-gcc supports -fno-rtti -fno-exceptions... no checking for s390x-linux-gnu-gcc option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-gcc PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-gcc static flag -static works... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... yes checking if s390x-linux-gnu-gcc supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-gcc linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking whether -lc should be explicitly linked in... no checking dynamic linker characteristics... GNU/Linux ld.so checking how to hardcode library paths into programs... immediate checking whether stripping libraries is possible... yes checking if libtool supports shared libraries... yes checking whether to build shared libraries... yes checking whether to build static libraries... yes checking for s390x-linux-gnu-g++... s390x-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether s390x-linux-gnu-g++ accepts -g... yes checking dependency style of s390x-linux-gnu-g++... none checking how to run the C++ preprocessor... s390x-linux-gnu-g++ -E checking for ld used by s390x-linux-gnu-g++... /usr/s390x-linux-gnu/bin/ld -m elf64_s390 checking if the linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) is GNU ld... yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking for s390x-linux-gnu-g++ option to produce PIC... -fPIC -DPIC checking if s390x-linux-gnu-g++ PIC flag -fPIC -DPIC works... yes checking if s390x-linux-gnu-g++ static flag -static works... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... yes checking if s390x-linux-gnu-g++ supports -c -o file.o... (cached) yes checking whether the s390x-linux-gnu-g++ linker (/usr/s390x-linux-gnu/bin/ld -m elf64_s390) supports shared libraries... yes checking dynamic linker characteristics... (cached) GNU/Linux ld.so checking how to hardcode library paths into programs... immediate ./configure: line 11542: AX_CXXFLAGS: command not found checking for ANSI C header files... (cached) yes checking for stdlib.h... (cached) yes checking whether make sets $(MAKE)... (cached) yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating libsmithwaterman.pc config.status: creating config.h config.status: executing depfiles commands config.status: executing libtool commands configure: WARNING: unrecognized options: --disable-maintainer-mode dh_auto_build -a make -j1 make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make all-am make[2]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o smithwaterman.o smithwaterman.cpp /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-BandedSmithWaterman.lo `test -f 'BandedSmithWaterman.cpp' || echo './'`BandedSmithWaterman.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-BandedSmithWaterman.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c BandedSmithWaterman.cpp -o libsmithwaterman_la-BandedSmithWaterman.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-IndelAllele.lo `test -f 'IndelAllele.cpp' || echo './'`IndelAllele.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-IndelAllele.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c IndelAllele.cpp -o libsmithwaterman_la-IndelAllele.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-LeftAlign.lo `test -f 'LeftAlign.cpp' || echo './'`LeftAlign.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-LeftAlign.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c LeftAlign.cpp -o libsmithwaterman_la-LeftAlign.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-Repeats.lo `test -f 'Repeats.cpp' || echo './'`Repeats.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-Repeats.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c Repeats.cpp -o libsmithwaterman_la-Repeats.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=compile s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c -o libsmithwaterman_la-SmithWatermanGotoh.lo `test -f 'SmithWatermanGotoh.cpp' || echo './'`SmithWatermanGotoh.cpp libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -fPIC -DPIC -o .libs/libsmithwaterman_la-SmithWatermanGotoh.o libtool: compile: s390x-linux-gnu-g++ -DHAVE_CONFIG_H -I. -I. -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -c SmithWatermanGotoh.cpp -o libsmithwaterman_la-SmithWatermanGotoh.o >/dev/null 2>&1 /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -version-info 0:0 -Wl,-z,relro -Wl,-z,now -o libsmithwaterman.la -rpath /usr/lib/s390x-linux-gnu libsmithwaterman_la-BandedSmithWaterman.lo libsmithwaterman_la-IndelAllele.lo libsmithwaterman_la-LeftAlign.lo libsmithwaterman_la-Repeats.lo libsmithwaterman_la-SmithWatermanGotoh.lo libtool: link: s390x-linux-gnu-g++ -fPIC -DPIC -shared -nostdlib /usr/lib/gcc-cross/s390x-linux-gnu/8/../../../../s390x-linux-gnu/lib/../lib/crti.o /usr/lib/gcc-cross/s390x-linux-gnu/8/crtbeginS.o .libs/libsmithwaterman_la-BandedSmithWaterman.o .libs/libsmithwaterman_la-IndelAllele.o .libs/libsmithwaterman_la-LeftAlign.o .libs/libsmithwaterman_la-Repeats.o .libs/libsmithwaterman_la-SmithWatermanGotoh.o -L/usr/lib/gcc-cross/s390x-linux-gnu/8 -L/usr/lib/gcc-cross/s390x-linux-gnu/8/../../../../s390x-linux-gnu/lib/../lib -L/lib/s390x-linux-gnu -L/lib/../lib -L/usr/lib/s390x-linux-gnu -L/usr/lib/../lib -L/usr/lib/gcc-cross/s390x-linux-gnu/8/../../../../s390x-linux-gnu/lib -lstdc++ -lm -lc -lgcc_s /usr/lib/gcc-cross/s390x-linux-gnu/8/crtendS.o /usr/lib/gcc-cross/s390x-linux-gnu/8/../../../../s390x-linux-gnu/lib/../lib/crtn.o -g -O2 -fstack-protector-strong -Wl,-z -Wl,relro -Wl,-z -Wl,now -Wl,-soname -Wl,libsmithwaterman.so.0 -o .libs/libsmithwaterman.so.0.0.0 libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so.0" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so.0") libtool: link: (cd ".libs" && rm -f "libsmithwaterman.so" && ln -s "libsmithwaterman.so.0.0.0" "libsmithwaterman.so") libtool: link: s390x-linux-gnu-ar cru .libs/libsmithwaterman.a libsmithwaterman_la-BandedSmithWaterman.o libsmithwaterman_la-IndelAllele.o libsmithwaterman_la-LeftAlign.o libsmithwaterman_la-Repeats.o libsmithwaterman_la-SmithWatermanGotoh.o s390x-linux-gnu-ar: `u' modifier ignored since `D' is the default (see `U') libtool: link: s390x-linux-gnu-ranlib .libs/libsmithwaterman.a libtool: link: ( cd ".libs" && rm -f "libsmithwaterman.la" && ln -s "../libsmithwaterman.la" "libsmithwaterman.la" ) /bin/bash ./libtool --tag=CXX --mode=link s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o smithwaterman smithwaterman.o libsmithwaterman.la -ldisorder libtool: link: s390x-linux-gnu-g++ -g -O2 -fdebug-prefix-map=/<>/libsmithwaterman-0.0+git20160702.2610e25=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z -Wl,relro -Wl,-z -Wl,now -o .libs/smithwaterman smithwaterman.o ./.libs/libsmithwaterman.so -ldisorder make[2]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --no-parallel dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/libsmithwaterman-0.0\+git20160702.2610e25/debian/tmp AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[2]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu' /bin/bash ./libtool --mode=install /usr/bin/install -c libsmithwaterman.la '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/libsmithwaterman.so.0.0.0 /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 libtool: install: (cd /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so.0 || { rm -f libsmithwaterman.so.0 && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so.0; }; }) libtool: install: (cd /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu && { ln -s -f libsmithwaterman.so.0.0.0 libsmithwaterman.so || { rm -f libsmithwaterman.so && ln -s libsmithwaterman.so.0.0.0 libsmithwaterman.so; }; }) libtool: install: /usr/bin/install -c .libs/libsmithwaterman.lai /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.la libtool: install: /usr/bin/install -c .libs/libsmithwaterman.a /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: install: chmod 644 /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: install: s390x-linux-gnu-ranlib /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a libtool: warning: remember to run 'libtool --finish /usr/lib/s390x-linux-gnu' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' /bin/bash ./libtool --mode=install /usr/bin/install -c smithwaterman '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin' libtool: warning: 'libsmithwaterman.la' has not been installed in '/usr/lib/s390x-linux-gnu' libtool: install: /usr/bin/install -c .libs/smithwaterman /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/bin/smithwaterman /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /usr/bin/install -c -m 644 BandedSmithWaterman.h IndelAllele.h LeftAlign.h Mosaik.h Repeats.h SmithWatermanGotoh.h convert.h '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/include/smithwaterman' /bin/mkdir -p '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' /usr/bin/install -c -m 644 libsmithwaterman.pc '/<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig' make[2]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' debian/rules override_dh_install make[1]: Entering directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_install d-shlibmove --commit \ --multiarch \ --devunversioned \ --exclude-la \ --movedev debian/tmp/usr/include/* usr/include \ --movedev "debian/tmp/usr/lib/*/pkgconfig/*.pc" usr/lib/s390x-linux-gnu/pkgconfig \ debian/tmp/usr/lib/*/*.so Library package automatic movement utility set -e install -d -m 755 debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu install -d -m 755 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.a debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu mv debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu mv /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu mv /<>/libsmithwaterman-0.0+git20160702.2610e25/debian/tmp/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 debian/libsmithwaterman0/usr/lib/s390x-linux-gnu PKGDEV=libsmithwaterman-dev PKGSHL=libsmithwaterman0 install -d -m 755 debian/libsmithwaterman-dev/usr/include mv debian/tmp/usr/include/smithwaterman debian/libsmithwaterman-dev/usr/include install -d -m 755 debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu/pkgconfig mv debian/tmp/usr/lib/*/pkgconfig/*.pc debian/libsmithwaterman-dev/usr/lib/s390x-linux-gnu/pkgconfig make[1]: Leaving directory '/<>/libsmithwaterman-0.0+git20160702.2610e25' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dpkg-gensymbols: warning: debian/libsmithwaterman0/DEBIAN/symbols doesn't match completely debian/libsmithwaterman0.symbols --- debian/libsmithwaterman0.symbols (libsmithwaterman0_0.0+git20160702.2610e25-7_s390x) +++ dpkg-gensymbolsCfUuhm 2019-03-21 21:18:57.704070845 +0000 @@ -72,9 +72,9 @@ (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE12_M_erase_auxESt23_Rb_tree_const_iteratorIS8_E@Base 0.0+git20160702.2610e25 (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE22_M_emplace_hint_uniqueIJRKSt21piecewise_construct_tSt5tupleIJRS7_EESJ_IJEEEEESt17_Rb_tree_iteratorIS8_ESt23_Rb_tree_const_iteratorIS8_EDpOT_@Base 0.0+git20160702.2610e25 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE24_M_get_insert_unique_posERS7_@Base 0.0+git20160702.2610e25 - (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-7# (optional)_ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE29_M_get_insert_hint_unique_posESt23_Rb_tree_const_iteratorIS8_ERS7_@Base 0.0+git20160702.2610e25 _ZNSt8_Rb_treeINSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEESt4pairIKS5_iESt10_Select1stIS8_ESt4lessIS5_ESaIS8_EE8_M_eraseEPSt13_Rb_tree_nodeIS8_E@Base 0.0+git20160702.2610e25 - (optional)_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 0.0+git20160702.2610e25 +#MISSING: 0.0+git20160702.2610e25-7# (optional)_ZSteqIcEN9__gnu_cxx11__enable_ifIXsrSt9__is_charIT_E7__valueEbE6__typeERKNSt7__cxx1112basic_stringIS3_St11char_traitsIS3_ESaIS3_EEESE_@Base 0.0+git20160702.2610e25 _ZeqRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25 _ZlsRSoRK11IndelAllele@Base 0.0+git20160702.2610e25 _ZltRK11IndelAlleleS1_@Base 0.0+git20160702.2610e25 dh_shlibdeps -a dpkg-shlibdeps: warning: symbol shannon_H used by debian/libsmithwaterman0/usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/smithwaterman/usr/bin/smithwaterman was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libsmithwaterman-dev: substitution variable ${shlibs:Depends} used, but is not defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libsmithwaterman0' in '../libsmithwaterman0_0.0+git20160702.2610e25-7_s390x.deb'. dpkg-deb: building package 'libsmithwaterman0-dbgsym' in '../libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-7_s390x.deb'. dpkg-deb: building package 'libsmithwaterman-dev' in '../libsmithwaterman-dev_0.0+git20160702.2610e25-7_s390x.deb'. dpkg-deb: building package 'smithwaterman' in '../smithwaterman_0.0+git20160702.2610e25-7_s390x.deb'. dpkg-deb: building package 'smithwaterman-dbgsym' in '../smithwaterman-dbgsym_0.0+git20160702.2610e25-7_s390x.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../libsmithwaterman_0.0+git20160702.2610e25-7_s390x.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-03-21T21:19:02Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-bkKOL2/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-libsmithwaterman-dummy sbuild-build-depends-lintian-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-bkKOL2/apt_archive ./ InRelease Get:2 copy:/<>/resolver-bkKOL2/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-bkKOL2/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-bkKOL2/apt_archive ./ Sources [778 B] Get:5 copy:/<>/resolver-bkKOL2/apt_archive ./ Packages [845 B] Fetched 2586 B in 0s (130 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:s390x t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7775 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-bkKOL2/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-1 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-1 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-1 [867 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1b-1 [1531 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.11.0 [1187 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7775 kB in 0s (39.9 MB/s) Selecting previously unselected package netbase. (Reading database ... 17782 files and directories currently installed.) Preparing to unpack .../00-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package readline-common. Preparing to unpack .../01-readline-common_7.0-5_all.deb ... Unpacking readline-common (7.0-5) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.2-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.2-1) ... Selecting previously unselected package libreadline7:amd64. Preparing to unpack .../04-libreadline7_7.0-5_amd64.deb ... Unpacking libreadline7:amd64 (7.0-5) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.13-1_amd64.deb ... Unpacking gpgconf (2.2.13-1) ... Selecting previously unselected package libsqlite3-0:amd64. 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Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up netbase (5.6) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (7.0-5) ... Setting up liburi-perl (1.76-1) ... Setting up libreadline7:amd64 (7.0-5) ... Setting up libnet-ssleay-perl (1.85-2+b1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libnet-dns-perl (1.19-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.13-1) ... Setting up libio-socket-ssl-perl (2.060-3) ... Setting up gpg (2.2.13-1) ... Setting up libcgi-pm-perl (4.40-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmailtools-perl (2.18-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up lintian (2.11.0) ... Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-8) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libsmithwaterman_0.0+git20160702.2610e25-7_s390x.changes: --------------------------------------------------------- Format: 1.8 Date: Mon, 13 Aug 2018 11:16:53 +0000 Source: libsmithwaterman Binary: libsmithwaterman-dev libsmithwaterman0 libsmithwaterman0-dbgsym smithwaterman smithwaterman-dbgsym Built-For-Profiles: cross nocheck Architecture: s390x Version: 0.0+git20160702.2610e25-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Graham Inggs Description: libsmithwaterman-dev - determine similar regions between two strings or genomic sequence libsmithwaterman0 - determine similar regions between two strings or genomic sequence smithwaterman - determine similar regions between two strings or genomic sequence Changes: libsmithwaterman (0.0+git20160702.2610e25-7) unstable; urgency=medium . * Team upload * Mark specific symbols for mips and mipsel as optional Checksums-Sha1: 3d92cba08b920209c1d26675d89061363f0a833b 37688 libsmithwaterman-dev_0.0+git20160702.2610e25-7_s390x.deb 73e28f42b2fa0f57488f386c187835f9a2ce0a70 426900 libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-7_s390x.deb d592e4ecdb28eb42bf8811644f2afdb7165c73cb 34500 libsmithwaterman0_0.0+git20160702.2610e25-7_s390x.deb 2c26e64a232cc6870cfcd5b1b606dfa68fcfdd7e 6169 libsmithwaterman_0.0+git20160702.2610e25-7_s390x.buildinfo 35a5d66dc4a41a90951c72d2dd2a9ff88c137a6d 71600 smithwaterman-dbgsym_0.0+git20160702.2610e25-7_s390x.deb 772db8c06bea8f11cba05c88f03f7823fb122641 9728 smithwaterman_0.0+git20160702.2610e25-7_s390x.deb Checksums-Sha256: 0931bff395ca1e3cb584e02c85cbd058fd504f78739515cebb1444f635cf3b14 37688 libsmithwaterman-dev_0.0+git20160702.2610e25-7_s390x.deb af7b0bca0b6f3729f6071ddb2a3095128c79c05125d8f75ad089b70b7fe04305 426900 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8f4098793a1a9cd68adf55fa89c69e376b051216beb765b170d91c013b00d3f0 34500 libsmithwaterman0_0.0+git20160702.2610e25-7_s390x.deb f40393c715d36e9e40108cc1a218fa6c4fb7459a878c621d629fe84037e43710 71600 smithwaterman-dbgsym_0.0+git20160702.2610e25-7_s390x.deb cd38289882827f25af8bb24cb0c83506ec105659bbb646f3778806d1f934ff93 9728 smithwaterman_0.0+git20160702.2610e25-7_s390x.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 21 Mar 2019 21:19:01 +0000 Build-Path: /<>/libsmithwaterman-0.0+git20160702.2610e25 Installed-Build-Depends: adduser (= 3.118), apt (= 1.8.0), autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.1), base-passwd (= 3.5.46), bash (= 5.0-2), binutils (= 2.31.1-15), binutils-common (= 2.31.1-15), binutils-x86-64-linux-gnu (= 2.31.1-15), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-3), d-shlibs (= 0.84), dash (= 0.5.10.2-5), debconf (= 1.5.71), debhelper (= 12.1.1), debian-archive-keyring (= 2018.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-2), dpkg (= 1.19.5), dpkg-dev (= 1.19.5), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-3), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-3), gcc-8-base (= 8.3.0-3), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), gpgv (= 2.2.13-1), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libapt-pkg5.0 (= 1.8.0), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-3), libatomic1 (= 8.3.0-3), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-2), libaudit1 (= 1:2.8.4-2), libbinutils (= 2.31.1-15), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-8), libc-dev-bin (= 2.28-8), libc6 (= 2.28-8), libc6-dev (= 2.28-8), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-3), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.248), libdisorder-dev (= 0.0.2+git20130809.8062ee1-1), libdisorder0 (= 0.0.2+git20130809.8062ee1-1), libdpkg-perl (= 1.19.5), libelf1 (= 0.176-1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-3), libgcc1 (= 1:8.3.0-3), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgnutls30 (= 3.6.6-3), libgomp1 (= 8.3.0-3), libgpg-error0 (= 1.35-1), libhogweed4 (= 3.4.1-1), libicu63 (= 63.1-6), libidn2-0 (= 2.0.5-1), libisl19 (= 0.20-2), libitm1 (= 8.3.0-3), liblsan0 (= 8.3.0-3), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-3), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libnettle6 (= 3.4.1-1), libp11-kit0 (= 0.23.15-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-5), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-3), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsemanage-common (= 2.8-2), libsemanage1 (= 2.8-2), libsepol1 (= 2.8-1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-3), libstdc++6 (= 8.3.0-3), libsystemd0 (= 241-2), libtasn1-6 (= 4.13-3), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-3), libubsan1 (= 8.3.0-3), libuchardet0 (= 0.0.6-3), libudev1 (= 241-2), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), libzstd1 (= 1.3.8+dfsg-3), linux-libc-dev (= 4.19.28-2), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), passwd (= 1:4.5-1.1), patch (= 2.7.6-3), perl (= 5.28.1-5), perl-base (= 5.28.1-5), perl-modules-5.28 (= 5.28.1-5), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-5), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1534159013" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsmithwaterman-dev_0.0+git20160702.2610e25-7_s390x.deb -------------------------------------------------------- new Debian package, version 2.0. size 37688 bytes: control archive=1136 bytes. 882 bytes, 19 lines control 851 bytes, 11 lines md5sums Package: libsmithwaterman-dev Source: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 171 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-7), libdisorder-dev Section: libdevel Priority: optional Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (devel) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This is the development package containing the statically linked library and the header files. drwxr-xr-x root/root 0 2018-08-13 11:16 ./ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/include/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/include/smithwaterman/ -rw-r--r-- root/root 4545 2018-08-13 11:16 ./usr/include/smithwaterman/BandedSmithWaterman.h -rw-r--r-- root/root 1040 2018-08-13 11:16 ./usr/include/smithwaterman/IndelAllele.h -rw-r--r-- root/root 882 2018-08-13 11:16 ./usr/include/smithwaterman/LeftAlign.h -rw-r--r-- root/root 1716 2018-08-13 11:16 ./usr/include/smithwaterman/Mosaik.h -rw-r--r-- root/root 211 2018-08-13 11:16 ./usr/include/smithwaterman/Repeats.h -rw-r--r-- root/root 3970 2018-08-13 11:16 ./usr/include/smithwaterman/SmithWatermanGotoh.h -rw-r--r-- root/root 470 2018-08-13 11:16 ./usr/include/smithwaterman/convert.h drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/ -rw-r--r-- root/root 142070 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/libsmithwaterman.a lrwxrwxrwx root/root 0 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/libsmithwaterman.so -> libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/pkgconfig/ -rw-r--r-- root/root 264 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/pkgconfig/libsmithwaterman.pc drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/libsmithwaterman-dev/ -rw-r--r-- root/root 929 2018-08-13 11:16 ./usr/share/doc/libsmithwaterman-dev/changelog.Debian.gz -rw-r--r-- root/root 1416 2018-08-06 09:58 ./usr/share/doc/libsmithwaterman-dev/copyright libsmithwaterman0-dbgsym_0.0+git20160702.2610e25-7_s390x.deb ------------------------------------------------------------ new Debian package, version 2.0. size 426900 bytes: control archive=560 bytes. 445 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libsmithwaterman0-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 439 Depends: libsmithwaterman0 (= 0.0+git20160702.2610e25-7) Section: debug Priority: optional Description: debug symbols for libsmithwaterman0 Build-Ids: b409a657a0dd954dd54509a6e69d451e6c1496d3 drwxr-xr-x root/root 0 2018-08-13 11:16 ./ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/.build-id/b4/ -rw-r--r-- root/root 439280 2018-08-13 11:16 ./usr/lib/debug/.build-id/b4/09a657a0dd954dd54509a6e69d451e6c1496d3.debug drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-08-13 11:16 ./usr/share/doc/libsmithwaterman0-dbgsym -> libsmithwaterman0 libsmithwaterman0_0.0+git20160702.2610e25-7_s390x.deb ----------------------------------------------------- new Debian package, version 2.0. size 34500 bytes: control archive=2120 bytes. 811 bytes, 18 lines control 318 bytes, 4 lines md5sums 37 bytes, 1 lines shlibs 7974 bytes, 79 lines symbols 67 bytes, 2 lines triggers Package: libsmithwaterman0 Source: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 107 Depends: libc6 (>= 2.4), libgcc1 (>= 1:3.0), libstdc++6 (>= 5.2) Section: libs Priority: optional Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences (lib) The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. . This package contains the dynamic library. drwxr-xr-x root/root 0 2018-08-13 11:16 ./ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/ lrwxrwxrwx root/root 0 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/libsmithwaterman.so.0 -> libsmithwaterman.so.0.0.0 -rw-r--r-- root/root 83904 2018-08-13 11:16 ./usr/lib/s390x-linux-gnu/libsmithwaterman.so.0.0.0 drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/libsmithwaterman0/ -rw-r--r-- root/root 929 2018-08-13 11:16 ./usr/share/doc/libsmithwaterman0/changelog.Debian.gz -rw-r--r-- root/root 1416 2018-08-06 09:58 ./usr/share/doc/libsmithwaterman0/copyright drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/man/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/man/man1/ -rw-r--r-- root/root 831 2018-08-13 11:16 ./usr/share/man/man1/smithwaterman.1.gz smithwaterman-dbgsym_0.0+git20160702.2610e25-7_s390x.deb -------------------------------------------------------- new Debian package, version 2.0. size 71600 bytes: control archive=556 bytes. 432 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: smithwaterman-dbgsym Source: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Auto-Built-Package: debug-symbols Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 86 Depends: smithwaterman (= 0.0+git20160702.2610e25-7) Section: debug Priority: optional Description: debug symbols for smithwaterman Build-Ids: 29cc9ddf86f56b048daed7a3b78d9d1c75d1c52d drwxr-xr-x root/root 0 2018-08-13 11:16 ./ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 77408 2018-08-13 11:16 ./usr/lib/debug/.build-id/29/cc9ddf86f56b048daed7a3b78d9d1c75d1c52d.debug drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-08-13 11:16 ./usr/share/doc/smithwaterman-dbgsym -> smithwaterman smithwaterman_0.0+git20160702.2610e25-7_s390x.deb ------------------------------------------------- new Debian package, version 2.0. size 9728 bytes: control archive=824 bytes. 829 bytes, 16 lines control 210 bytes, 3 lines md5sums Package: smithwaterman Source: libsmithwaterman Version: 0.0+git20160702.2610e25-7 Architecture: s390x Maintainer: Debian Med Packaging Team Installed-Size: 33 Depends: libc6 (>= 2.4), libdisorder0 (>= 0.0.2), libgcc1 (>= 1:3.0), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 5.2) Section: science Priority: optional Homepage: https://github.com/ekg/smithwaterman Description: determine similar regions between two strings or genomic sequences The Smith–Waterman algorithm performs local sequence alignment; that is, for determining similar regions between two strings or nucleotide or protein sequences. Instead of looking at the total sequence, the Smith–Waterman algorithm compares segments of all possible lengths and optimizes the similarity measure. drwxr-xr-x root/root 0 2018-08-13 11:16 ./ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/bin/ -rwxr-xr-x root/root 22960 2018-08-13 11:16 ./usr/bin/smithwaterman drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-08-13 11:16 ./usr/share/doc/smithwaterman/ -rw-r--r-- root/root 929 2018-08-13 11:16 ./usr/share/doc/smithwaterman/changelog.Debian.gz -rw-r--r-- root/root 1416 2018-08-06 09:58 ./usr/share/doc/smithwaterman/copyright +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 20796 Build-Time: 37 Distribution: unstable Foreign Architectures: s390x Host Architecture: s390x Install-Time: 21 Job: libsmithwaterman_0.0+git20160702.2610e25-7 Lintian: pass Machine Architecture: amd64 Package: libsmithwaterman Package-Time: 67 Source-Version: 0.0+git20160702.2610e25-7 Space: 20796 Status: successful Version: 0.0+git20160702.2610e25-7 -------------------------------------------------------------------------------- Finished at 2019-03-21T21:19:02Z Build needed 00:01:07, 20796k disk space