sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | libvcflib 1.0.3+dfsg-2 (armel) Sun, 04 Dec 2022 18:42:23 +0000 | +==============================================================================+ Package: libvcflib Version: 1.0.3+dfsg-2 Source Version: 1.0.3+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-85802c98-ae53-40ff-aee3-41f6f331f28c' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-VAUzUQ/resolver-zFZffQ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [161 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-12-04-1405.06-F-2022-12-04-0205.35.pdiff [34.9 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-12-04-1405.06-F-2022-12-04-0205.35.pdiff [31.4 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2022-12-04-1405.06-F-2022-12-04-0205.35.pdiff [34.9 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2022-12-04-1405.06-F-2022-12-04-0205.35.pdiff [31.4 kB] Get:6 http://localhost:3142/debian sid/main armel Packages [8982 kB] Fetched 9337 kB in 3s (3514 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libvcflib.git Please use: git clone https://salsa.debian.org/med-team/libvcflib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 7567 kB of source archives. Get:1 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (dsc) [2301 B] Get:2 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (tar) [7556 kB] Get:3 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (diff) [8100 B] Fetched 7567 kB in 0s (174 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libvcflib-VAUzUQ/libvcflib-1.0.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-VAUzUQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [485 B] Get:5 copy:/<>/apt_archive ./ Packages [556 B] Fetched 1998 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armel libdeflate0:armel libdisorder-dev:armel libdisorder0:armel libelf1 libexpat1 libfastahack-dev:armel libfastahack0:armel libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libjsoncpp25 libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0 libldap-2.5-0:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses6 libncursesw6 libnettle8:armel libnghttp2-14 libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpkgconf3 libprocps8 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsmithwaterman-dev:armel libsmithwaterman0:armel libssh2-1 libssh2-1:armel libssl3:armel libssw-dev:armel libssw0:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtabixpp-dev:armel libtabixpp0:armel libtasn1-6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db markdown pkg-config:armel pkgconf:armel pkgconf-bin po-debconf procps sensible-utils ucf zlib1g:armel zlib1g-dev:armel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:armel libc-l10n:armel locales:armel libnss-nis:armel libnss-nisplus:armel manpages-dev:armel libcurl4-doc:armel libgnutls28-dev:armel libidn11-dev:armel libkrb5-dev:armel libldap2-dev:armel librtmp-dev:armel libssh2-1-dev:armel gnutls-bin:armel krb5-doc:armel krb5-user:armel liblzma-doc:armel libstdc++-11-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:armel ca-certificates:armel ca-certificates libarchive-cpio-perl krb5-locales:armel libldap-common libldap-common:armel libgpm2 publicsuffix publicsuffix:armel libsasl2-modules libsasl2-modules:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils cmake cmake-data cpp-12-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-11-base:armel gcc-12-arm-linux-gnueabi gcc-12-arm-linux-gnueabi-base gcc-12-base:armel gcc-12-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libasan6:armel libasan8-armel-cross libatomic1:armel libatomic1-armel-cross libbrotli1 libbrotli1:armel libbz2-1.0:armel libbz2-dev:armel libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armel libcrypt1:armel libcurl3-gnutls:armel libcurl4 libcurl4-gnutls-dev:armel libdb5.3:armel libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:armel libdeflate0:armel libdisorder-dev:armel libdisorder0:armel libelf1 libexpat1 libfastahack-dev:armel libfastahack0:armel libffi8:armel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armel libgcc-12-dev-armel-cross libgcc-s1:armel libgcc-s1-armel-cross libgmp10:armel libgnutls30:armel libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2:armel libhogweed6:armel libhts-dev:armel libhts3:armel libhtscodecs2:armel libicu72 libidn2-0:armel libio-string-perl libjsoncpp25 libk5crypto3:armel libkeyutils1:armel libkrb5-3:armel libkrb5support0:armel libldap-2.5-0 libldap-2.5-0:armel liblocale-gettext-perl liblzma-dev:armel liblzma5:armel libmagic-mgc libmagic1 libncurses6 libncursesw6 libnettle8:armel libnghttp2-14 libnghttp2-14:armel libnsl-dev:armel libnsl2:armel libp11-kit0:armel libpipeline1 libpkgconf3 libprocps8 libpsl5 libpsl5:armel librhash0 librtmp1 librtmp1:armel libsasl2-2 libsasl2-2:armel libsasl2-modules-db libsasl2-modules-db:armel libsmithwaterman-dev:armel libsmithwaterman0:armel libssh2-1 libssh2-1:armel libssl3:armel libssw-dev:armel libssw0:armel libstdc++-11-dev:armel libstdc++-12-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtabixpp-dev:armel libtabixpp0:armel libtasn1-6:armel libtirpc-dev:armel libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libunistring2:armel libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:armel linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db markdown pkg-config:armel pkgconf:armel pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:armel sensible-utils ucf zlib1g:armel zlib1g-dev:armel 0 upgraded, 161 newly installed, 0 to remove and 0 not upgraded. Need to get 106 MB of archives. After this operation, 409 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [988 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b3 [15.1 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncurses6 amd64 6.3+20220423-2 [102 kB] Get:4 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:5 http://localhost:3142/debian sid/main amd64 libprocps8 amd64 2:3.3.17-7.1 [45.1 kB] Get:6 http://localhost:3142/debian sid/main amd64 procps amd64 2:3.3.17-7.1 [482 kB] Get:7 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:9 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:10 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:11 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:12 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:13 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:14 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:16 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.1-1 [1384 kB] Get:17 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:18 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:19 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:20 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:22 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:23 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabi amd64 2.39-8 [3232 kB] Get:24 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:25 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:26 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.0-1 [350 kB] Get:27 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:29 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:30 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-2+b1 [183 kB] Get:31 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.50.0-1+b1 [73.1 kB] Get:32 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:33 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:34 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:35 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.86.0-2 [364 kB] Get:36 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:37 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:38 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:39 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get:41 http://localhost:3142/debian sid/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get:42 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi-base amd64 12.2.0-9cross2 [37.3 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [8663 kB] Get:44 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabi amd64 4:12.2.0-1 [17.2 kB] Get:45 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.19 [16.3 kB] Get:46 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-9cross2 [32.8 kB] Get:47 http://localhost:3142/debian sid/main amd64 libc6-armel-cross all 2.36-3cross1 [885 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgcc-s1-armel-cross all 12.2.0-9cross2 [38.4 kB] Get:49 http://localhost:3142/debian sid/main amd64 libgomp1-armel-cross all 12.2.0-9cross2 [96.8 kB] Get:50 http://localhost:3142/debian sid/main amd64 libatomic1-armel-cross all 12.2.0-9cross2 [8912 B] Get:51 http://localhost:3142/debian sid/main amd64 libasan8-armel-cross all 12.2.0-9cross2 [2092 kB] Get:52 http://localhost:3142/debian sid/main amd64 libstdc++6-armel-cross all 12.2.0-9cross2 [464 kB] Get:53 http://localhost:3142/debian sid/main amd64 libubsan1-armel-cross all 12.2.0-9cross2 [862 kB] Get:54 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armel-cross all 12.2.0-9cross2 [732 kB] Get:55 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [17.0 MB] Get:56 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabi amd64 4:12.2.0-1 [1452 B] Get:57 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armel-cross all 6.0.6-2cross1 [1763 kB] Get:58 http://localhost:3142/debian sid/main amd64 libc6-dev-armel-cross all 2.36-3cross1 [1284 kB] Get:59 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armel-cross all 12.2.0-9cross2 [2033 kB] Get:60 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabi amd64 12.2.0-9cross2 [9594 kB] Get:61 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabi amd64 4:12.2.0-1 [1176 B] Get:62 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:66 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:68 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:71 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:73 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.19 [15.3 kB] Get:74 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.19 [25.6 kB] Get:75 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armel all 12.9 [6704 B] Get:76 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.1 [80.8 kB] Get:77 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:78 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:80 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:81 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-2 [19.4 kB] Get:82 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-2 [8556 B] Get:83 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-1 [172 kB] Get:84 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14+20220924-2 [109 kB] Get:85 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:86 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:87 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:88 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.1 [941 kB] Get:89 http://localhost:3142/debian sid/main armel gcc-11-base armel 11.3.0-8 [209 kB] Get:90 http://localhost:3142/debian sid/main armel gcc-12-base armel 12.2.0-9 [37.1 kB] Get:91 http://localhost:3142/debian sid/main armel libgcc-s1 armel 12.2.0-9 [38.4 kB] Get:92 http://localhost:3142/debian sid/main armel libc6 armel 2.36-6 [2184 kB] Get:93 http://localhost:3142/debian sid/main armel libasan6 armel 11.3.0-8 [1945 kB] Get:94 http://localhost:3142/debian sid/main armel libatomic1 armel 12.2.0-9 [9152 B] Get:95 http://localhost:3142/debian sid/main armel libbrotli1 armel 1.0.9-2+b5 [283 kB] Get:96 http://localhost:3142/debian sid/main armel libbz2-1.0 armel 1.0.8-5+b1 [45.4 kB] Get:97 http://localhost:3142/debian sid/main armel linux-libc-dev armel 6.0.10-2 [1650 kB] Get:98 http://localhost:3142/debian sid/main armel libcrypt1 armel 1:4.4.33-1 [96.0 kB] Get:99 http://localhost:3142/debian sid/main armel libcrypt-dev armel 1:4.4.33-1 [125 kB] Get:100 http://localhost:3142/debian sid/main armel libcom-err2 armel 1.46.6~rc1-1+b1 [14.2 kB] Get:101 http://localhost:3142/debian sid/main armel libkrb5support0 armel 1.20.1-1 [29.2 kB] Get:102 http://localhost:3142/debian sid/main armel libk5crypto3 armel 1.20.1-1 [74.0 kB] Get:103 http://localhost:3142/debian sid/main armel libkeyutils1 armel 1.6.3-1 [14.8 kB] Get:104 http://localhost:3142/debian sid/main armel libssl3 armel 3.0.7-1 [1621 kB] Get:105 http://localhost:3142/debian sid/main armel libkrb5-3 armel 1.20.1-1 [284 kB] Get:106 http://localhost:3142/debian sid/main armel libgssapi-krb5-2 armel 1.20.1-1 [110 kB] Get:107 http://localhost:3142/debian sid/main armel libtirpc3 armel 1.3.3+ds-1 [72.0 kB] Get:108 http://localhost:3142/debian sid/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:109 http://localhost:3142/debian sid/main armel libtirpc-dev armel 1.3.3+ds-1 [182 kB] Get:110 http://localhost:3142/debian sid/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:111 http://localhost:3142/debian sid/main armel libc6-dev armel 2.36-6 [1287 kB] Get:112 http://localhost:3142/debian sid/main armel libbz2-dev armel 1.0.8-5+b1 [27.7 kB] Get:113 http://localhost:3142/debian sid/main armel libgmp10 armel 2:6.2.1+dfsg1-1.1 [508 kB] Get:114 http://localhost:3142/debian sid/main armel libnettle8 armel 3.8.1-2 [294 kB] Get:115 http://localhost:3142/debian sid/main armel libhogweed6 armel 3.8.1-2 [315 kB] Get:116 http://localhost:3142/debian sid/main armel libunistring2 armel 1.0-2 [398 kB] Get:117 http://localhost:3142/debian sid/main armel libidn2-0 armel 2.3.3-1+b1 [120 kB] Get:118 http://localhost:3142/debian sid/main armel libffi8 armel 3.4.4-1 [19.3 kB] Get:119 http://localhost:3142/debian sid/main armel libp11-kit0 armel 0.24.1-1 [328 kB] Get:120 http://localhost:3142/debian sid/main armel libtasn1-6 armel 4.19.0-2 [50.9 kB] Get:121 http://localhost:3142/debian sid/main armel libgnutls30 armel 3.7.8-4 [1294 kB] Get:122 http://localhost:3142/debian sid/main armel libdb5.3 armel 5.3.28+dfsg1-0.10 [572 kB] Get:123 http://localhost:3142/debian sid/main armel libsasl2-modules-db armel 2.1.28+dfsg-10 [19.1 kB] Get:124 http://localhost:3142/debian sid/main armel libsasl2-2 armel 2.1.28+dfsg-10 [51.8 kB] Get:125 http://localhost:3142/debian sid/main armel libldap-2.5-0 armel 2.5.13+dfsg-2+b1 [157 kB] Get:126 http://localhost:3142/debian sid/main armel libnghttp2-14 armel 1.50.0-1+b1 [62.9 kB] Get:127 http://localhost:3142/debian sid/main armel libpsl5 armel 0.21.0-1.2 [56.2 kB] Get:128 http://localhost:3142/debian sid/main armel zlib1g armel 1:1.2.13.dfsg-1 [73.6 kB] Get:129 http://localhost:3142/debian sid/main armel librtmp1 armel 2.4+20151223.gitfa8646d.1-2+b2 [55.1 kB] Get:130 http://localhost:3142/debian sid/main armel libssh2-1 armel 1.10.0-3+b1 [161 kB] Get:131 http://localhost:3142/debian sid/main armel libzstd1 armel 1.5.2+dfsg-1 [237 kB] Get:132 http://localhost:3142/debian sid/main armel libcurl3-gnutls armel 7.86.0-2 [319 kB] Get:133 http://localhost:3142/debian sid/main armel libcurl4-gnutls-dev armel 7.86.0-2 [419 kB] Get:134 http://localhost:3142/debian sid/main armel libdeflate0 armel 1.14-1 [45.5 kB] Get:135 http://localhost:3142/debian sid/main armel libdeflate-dev armel 1.14-1 [44.7 kB] Get:136 http://localhost:3142/debian sid/main armel libdisorder0 armel 0.0.2+git20130809.8062ee1-4+b1 [6660 B] Get:137 http://localhost:3142/debian sid/main armel libdisorder-dev armel 0.0.2+git20130809.8062ee1-4+b1 [4840 B] Get:138 http://localhost:3142/debian sid/main armel libstdc++6 armel 12.2.0-9 [506 kB] Get:139 http://localhost:3142/debian sid/main armel libfastahack0 armel 1.0.0+dfsg-10 [23.9 kB] Get:140 http://localhost:3142/debian sid/main armel libfastahack-dev armel 1.0.0+dfsg-10 [27.9 kB] Get:141 http://localhost:3142/debian sid/main armel libgomp1 armel 12.2.0-9 [99.6 kB] Get:142 http://localhost:3142/debian sid/main armel libubsan1 armel 12.2.0-9 [863 kB] Get:143 http://localhost:3142/debian sid/main armel libgcc-11-dev armel 11.3.0-8 [702 kB] Get:144 http://localhost:3142/debian sid/main armel libhtscodecs2 armel 1.3.0-4 [60.7 kB] Get:145 http://localhost:3142/debian sid/main armel liblzma5 armel 5.2.9-0.0 [179 kB] Get:146 http://localhost:3142/debian sid/main armel libhts3 armel 1.16+ds-3 [372 kB] Get:147 http://localhost:3142/debian sid/main armel liblzma-dev armel 5.2.9-0.0 [236 kB] Get:148 http://localhost:3142/debian sid/main armel zlib1g-dev armel 1:1.2.13.dfsg-1 [902 kB] Get:149 http://localhost:3142/debian sid/main armel libhts-dev armel 1.16+ds-3 [1518 kB] Get:150 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.0-11 [35.7 kB] Get:151 http://localhost:3142/debian sid/main armel libsmithwaterman0 armel 0.0+git20160702.2610e25-12+b1 [32.3 kB] Get:152 http://localhost:3142/debian sid/main armel libsmithwaterman-dev armel 0.0+git20160702.2610e25-12+b1 [38.0 kB] Get:153 http://localhost:3142/debian sid/main armel libssw0 armel 1.1-13 [20.9 kB] Get:154 http://localhost:3142/debian sid/main armel libssw-dev armel 1.1-13 [24.4 kB] Get:155 http://localhost:3142/debian sid/main armel libstdc++-11-dev armel 11.3.0-8 [1974 kB] Get:156 http://localhost:3142/debian sid/main armel libtabixpp0 armel 1.1.1-1 [8960 B] Get:157 http://localhost:3142/debian sid/main armel libtabixpp-dev armel 1.1.1-1 [8504 B] Get:158 http://localhost:3142/debian sid/main amd64 markdown all 1.0.1-12 [17.7 kB] Get:159 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.0-11 [29.2 kB] Get:160 http://localhost:3142/debian sid/main armel pkgconf armel 1.8.0-11 [25.6 kB] Get:161 http://localhost:3142/debian sid/main armel pkg-config armel 1.8.0-11 [13.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 106 MB in 1s (154 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15686 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b3_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../001-libncurses6_6.3+20220423-2_amd64.deb ... Unpacking libncurses6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../002-libncursesw6_6.3+20220423-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.3+20220423-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.17-7.1_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-7.1) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.17-7.1_amd64.deb ... Unpacking procps (2:3.3.17-7.1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.41-4_amd64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.41-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.41-4_amd64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.21-10_amd64.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../010-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../011-groff-base_1.22.4-9_amd64.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../012-bsdextrautils_2.38.1-4_amd64.deb ... Unpacking bsdextrautils (2.38.1-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../013-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../014-man-db_2.11.1-1_amd64.deb ... Unpacking man-db (2.11.1-1) ... Selecting previously unselected package ucf. Preparing to unpack .../015-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package m4. Preparing to unpack .../016-m4_1.4.19-1_amd64.deb ... Unpacking m4 (1.4.19-1) ... Selecting previously unselected package autoconf. Preparing to unpack .../017-autoconf_2.71-2_all.deb ... Unpacking autoconf (2.71-2) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../018-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../019-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../020-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../021-binutils-arm-linux-gnueabi_2.39-8_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.39-8) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../022-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../023-libxml2_2.9.14+dfsg-1.1+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../024-libarchive13_3.6.0-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.0-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../025-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../026-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../027-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../028-libldap-2.5-0_2.5.13+dfsg-2+b1_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../029-libnghttp2-14_1.50.0-1+b1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.50.0-1+b1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../030-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../031-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../032-libssh2-1_1.10.0-3+b1_amd64.deb ... Unpacking libssh2-1:amd64 (1.10.0-3+b1) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../033-libcurl4_7.86.0-2_amd64.deb ... Unpacking libcurl4:amd64 (7.86.0-2) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../034-libexpat1_2.5.0-1_amd64.deb ... Unpacking libexpat1:amd64 (2.5.0-1) ... Selecting previously unselected package libjsoncpp25:amd64. Preparing to unpack .../035-libjsoncpp25_1.9.5-4_amd64.deb ... Unpacking libjsoncpp25:amd64 (1.9.5-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../036-librhash0_1.4.3-3_amd64.deb ... Unpacking librhash0:amd64 (1.4.3-3) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../037-libuv1_1.44.2-1_amd64.deb ... Unpacking libuv1:amd64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../038-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../039-cmake_3.25.1-1_amd64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package gcc-12-arm-linux-gnueabi-base:amd64. Preparing to unpack .../040-gcc-12-arm-linux-gnueabi-base_12.2.0-9cross2_amd64.deb ... Unpacking gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-9cross2) ... Selecting previously unselected package cpp-12-arm-linux-gnueabi. Preparing to unpack .../041-cpp-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ... Unpacking cpp-12-arm-linux-gnueabi (12.2.0-9cross2) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../042-cpp-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:12.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../043-cross-config_2.6.19_all.deb ... Unpacking cross-config (2.6.19) ... Selecting previously unselected package gcc-12-cross-base. Preparing to unpack .../044-gcc-12-cross-base_12.2.0-9cross2_all.deb ... Unpacking gcc-12-cross-base (12.2.0-9cross2) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../045-libc6-armel-cross_2.36-3cross1_all.deb ... Unpacking libc6-armel-cross (2.36-3cross1) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../046-libgcc-s1-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libgcc-s1-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../047-libgomp1-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libgomp1-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../048-libatomic1-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libatomic1-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libasan8-armel-cross. Preparing to unpack .../049-libasan8-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libasan8-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../050-libstdc++6-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libstdc++6-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../051-libubsan1-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libubsan1-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package libgcc-12-dev-armel-cross. Preparing to unpack .../052-libgcc-12-dev-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libgcc-12-dev-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package gcc-12-arm-linux-gnueabi. Preparing to unpack .../053-gcc-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ... Unpacking gcc-12-arm-linux-gnueabi (12.2.0-9cross2) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../054-gcc-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:12.2.0-1) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../055-linux-libc-dev-armel-cross_6.0.6-2cross1_all.deb ... Unpacking linux-libc-dev-armel-cross (6.0.6-2cross1) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../056-libc6-dev-armel-cross_2.36-3cross1_all.deb ... Unpacking libc6-dev-armel-cross (2.36-3cross1) ... Selecting previously unselected package libstdc++-12-dev-armel-cross. Preparing to unpack .../057-libstdc++-12-dev-armel-cross_12.2.0-9cross2_all.deb ... Unpacking libstdc++-12-dev-armel-cross (12.2.0-9cross2) ... Selecting previously unselected package g++-12-arm-linux-gnueabi. Preparing to unpack .../058-g++-12-arm-linux-gnueabi_12.2.0-9cross2_amd64.deb ... Unpacking g++-12-arm-linux-gnueabi (12.2.0-9cross2) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../059-g++-arm-linux-gnueabi_4%3a12.2.0-1_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:12.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../060-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../061-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../062-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../063-libxml-sax-base-perl_1.09-3_all.deb ... Unpacking libxml-sax-base-perl (1.09-3) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../064-libxml-sax-perl_1.02+dfsg-3_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-3) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../065-libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../066-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../067-libyaml-perl_1.30-2_all.deb ... Unpacking libyaml-perl (1.30-2) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../068-libconfig-auto-perl_0.44-2_all.deb ... Unpacking libconfig-auto-perl (0.44-2) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../069-libfile-which-perl_1.27-2_all.deb ... Unpacking libfile-which-perl (1.27-2) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../070-libfile-homedir-perl_1.006-2_all.deb ... Unpacking libfile-homedir-perl (1.006-2) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../071-libdebian-dpkgcross-perl_2.6.19_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.19) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../072-dpkg-cross_2.6.19_all.deb ... Unpacking dpkg-cross (2.6.19) ... Selecting previously unselected package crossbuild-essential-armel. Preparing to unpack .../073-crossbuild-essential-armel_12.9_all.deb ... Unpacking crossbuild-essential-armel (12.9) ... Selecting previously unselected package libdebhelper-perl. Preparing to unpack .../074-libdebhelper-perl_13.11.1_all.deb ... Unpacking libdebhelper-perl (13.11.1) ... Selecting previously unselected package libtool. Preparing to unpack .../075-libtool_2.4.7-5_all.deb ... Unpacking libtool (2.4.7-5) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../076-dh-autoreconf_20_all.deb ... Unpacking dh-autoreconf (20) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../077-libarchive-zip-perl_1.68-1_all.deb ... Unpacking libarchive-zip-perl (1.68-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../078-libsub-override-perl_0.09-4_all.deb ... Unpacking libsub-override-perl (0.09-4) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../079-libfile-stripnondeterminism-perl_1.13.0-2_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.13.0-2) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../080-dh-strip-nondeterminism_1.13.0-2_all.deb ... Unpacking dh-strip-nondeterminism (1.13.0-2) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../081-libelf1_0.188-1_amd64.deb ... Unpacking libelf1:amd64 (0.188-1) ... Selecting previously unselected package dwz. Preparing to unpack .../082-dwz_0.14+20220924-2_amd64.deb ... Unpacking dwz (0.14+20220924-2) ... Selecting previously unselected package gettext. Preparing to unpack .../083-gettext_0.21-10_amd64.deb ... Unpacking gettext (0.21-10) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../084-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../085-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../086-debhelper_13.11.1_all.deb ... Unpacking debhelper (13.11.1) ... Selecting previously unselected package gcc-11-base:armel. Preparing to unpack .../087-gcc-11-base_11.3.0-8_armel.deb ... Unpacking gcc-11-base:armel (11.3.0-8) ... Selecting previously unselected package gcc-12-base:armel. Preparing to unpack .../088-gcc-12-base_12.2.0-9_armel.deb ... Unpacking gcc-12-base:armel (12.2.0-9) ... Selecting previously unselected package libgcc-s1:armel. Preparing to unpack .../089-libgcc-s1_12.2.0-9_armel.deb ... Unpacking libgcc-s1:armel (12.2.0-9) ... Selecting previously unselected package libc6:armel. Preparing to unpack .../090-libc6_2.36-6_armel.deb ... Unpacking libc6:armel (2.36-6) ... Selecting previously unselected package libasan6:armel. Preparing to unpack .../091-libasan6_11.3.0-8_armel.deb ... Unpacking libasan6:armel (11.3.0-8) ... Selecting previously unselected package libatomic1:armel. Preparing to unpack .../092-libatomic1_12.2.0-9_armel.deb ... Unpacking libatomic1:armel (12.2.0-9) ... Selecting previously unselected package libbrotli1:armel. Preparing to unpack .../093-libbrotli1_1.0.9-2+b5_armel.deb ... Unpacking libbrotli1:armel (1.0.9-2+b5) ... Selecting previously unselected package libbz2-1.0:armel. Preparing to unpack .../094-libbz2-1.0_1.0.8-5+b1_armel.deb ... Unpacking libbz2-1.0:armel (1.0.8-5+b1) ... Selecting previously unselected package linux-libc-dev:armel. Preparing to unpack .../095-linux-libc-dev_6.0.10-2_armel.deb ... Unpacking linux-libc-dev:armel (6.0.10-2) ... Selecting previously unselected package libcrypt1:armel. Preparing to unpack .../096-libcrypt1_1%3a4.4.33-1_armel.deb ... Unpacking libcrypt1:armel (1:4.4.33-1) ... Selecting previously unselected package libcrypt-dev:armel. Preparing to unpack .../097-libcrypt-dev_1%3a4.4.33-1_armel.deb ... Unpacking libcrypt-dev:armel (1:4.4.33-1) ... Selecting previously unselected package libcom-err2:armel. Preparing to unpack .../098-libcom-err2_1.46.6~rc1-1+b1_armel.deb ... Unpacking libcom-err2:armel (1.46.6~rc1-1+b1) ... Selecting previously unselected package libkrb5support0:armel. Preparing to unpack .../099-libkrb5support0_1.20.1-1_armel.deb ... Unpacking libkrb5support0:armel (1.20.1-1) ... Selecting previously unselected package libk5crypto3:armel. Preparing to unpack .../100-libk5crypto3_1.20.1-1_armel.deb ... Unpacking libk5crypto3:armel (1.20.1-1) ... Selecting previously unselected package libkeyutils1:armel. Preparing to unpack .../101-libkeyutils1_1.6.3-1_armel.deb ... Unpacking libkeyutils1:armel (1.6.3-1) ... Selecting previously unselected package libssl3:armel. Preparing to unpack .../102-libssl3_3.0.7-1_armel.deb ... Unpacking libssl3:armel (3.0.7-1) ... Selecting previously unselected package libkrb5-3:armel. Preparing to unpack .../103-libkrb5-3_1.20.1-1_armel.deb ... Unpacking libkrb5-3:armel (1.20.1-1) ... Selecting previously unselected package libgssapi-krb5-2:armel. Preparing to unpack .../104-libgssapi-krb5-2_1.20.1-1_armel.deb ... Unpacking libgssapi-krb5-2:armel (1.20.1-1) ... Selecting previously unselected package libtirpc3:armel. Preparing to unpack .../105-libtirpc3_1.3.3+ds-1_armel.deb ... Unpacking libtirpc3:armel (1.3.3+ds-1) ... Selecting previously unselected package libnsl2:armel. Preparing to unpack .../106-libnsl2_1.3.0-2_armel.deb ... Unpacking libnsl2:armel (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:armel. Preparing to unpack .../107-libtirpc-dev_1.3.3+ds-1_armel.deb ... Unpacking libtirpc-dev:armel (1.3.3+ds-1) ... Selecting previously unselected package libnsl-dev:armel. Preparing to unpack .../108-libnsl-dev_1.3.0-2_armel.deb ... Unpacking libnsl-dev:armel (1.3.0-2) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../109-libc6-dev_2.36-6_armel.deb ... Unpacking libc6-dev:armel (2.36-6) ... Selecting previously unselected package libbz2-dev:armel. Preparing to unpack .../110-libbz2-dev_1.0.8-5+b1_armel.deb ... Unpacking libbz2-dev:armel (1.0.8-5+b1) ... Selecting previously unselected package libgmp10:armel. Preparing to unpack .../111-libgmp10_2%3a6.2.1+dfsg1-1.1_armel.deb ... Unpacking libgmp10:armel (2:6.2.1+dfsg1-1.1) ... Selecting previously unselected package libnettle8:armel. Preparing to unpack .../112-libnettle8_3.8.1-2_armel.deb ... Unpacking libnettle8:armel (3.8.1-2) ... Selecting previously unselected package libhogweed6:armel. Preparing to unpack .../113-libhogweed6_3.8.1-2_armel.deb ... Unpacking libhogweed6:armel (3.8.1-2) ... Selecting previously unselected package libunistring2:armel. Preparing to unpack .../114-libunistring2_1.0-2_armel.deb ... Unpacking libunistring2:armel (1.0-2) ... Selecting previously unselected package libidn2-0:armel. Preparing to unpack .../115-libidn2-0_2.3.3-1+b1_armel.deb ... Unpacking libidn2-0:armel (2.3.3-1+b1) ... Selecting previously unselected package libffi8:armel. Preparing to unpack .../116-libffi8_3.4.4-1_armel.deb ... Unpacking libffi8:armel (3.4.4-1) ... Selecting previously unselected package libp11-kit0:armel. Preparing to unpack .../117-libp11-kit0_0.24.1-1_armel.deb ... Unpacking libp11-kit0:armel (0.24.1-1) ... Selecting previously unselected package libtasn1-6:armel. Preparing to unpack .../118-libtasn1-6_4.19.0-2_armel.deb ... Unpacking libtasn1-6:armel (4.19.0-2) ... Selecting previously unselected package libgnutls30:armel. Preparing to unpack .../119-libgnutls30_3.7.8-4_armel.deb ... Unpacking libgnutls30:armel (3.7.8-4) ... Selecting previously unselected package libdb5.3:armel. Preparing to unpack .../120-libdb5.3_5.3.28+dfsg1-0.10_armel.deb ... Unpacking libdb5.3:armel (5.3.28+dfsg1-0.10) ... Selecting previously unselected package libsasl2-modules-db:armel. Preparing to unpack .../121-libsasl2-modules-db_2.1.28+dfsg-10_armel.deb ... Unpacking libsasl2-modules-db:armel (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:armel. Preparing to unpack .../122-libsasl2-2_2.1.28+dfsg-10_armel.deb ... Unpacking libsasl2-2:armel (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:armel. Preparing to unpack .../123-libldap-2.5-0_2.5.13+dfsg-2+b1_armel.deb ... Unpacking libldap-2.5-0:armel (2.5.13+dfsg-2+b1) ... Selecting previously unselected package libnghttp2-14:armel. Preparing to unpack .../124-libnghttp2-14_1.50.0-1+b1_armel.deb ... Unpacking libnghttp2-14:armel (1.50.0-1+b1) ... Selecting previously unselected package libpsl5:armel. Preparing to unpack .../125-libpsl5_0.21.0-1.2_armel.deb ... Unpacking libpsl5:armel (0.21.0-1.2) ... Selecting previously unselected package zlib1g:armel. Preparing to unpack .../126-zlib1g_1%3a1.2.13.dfsg-1_armel.deb ... Unpacking zlib1g:armel (1:1.2.13.dfsg-1) ... Selecting previously unselected package librtmp1:armel. Preparing to unpack .../127-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_armel.deb ... Unpacking librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:armel. Preparing to unpack .../128-libssh2-1_1.10.0-3+b1_armel.deb ... Unpacking libssh2-1:armel (1.10.0-3+b1) ... Selecting previously unselected package libzstd1:armel. Preparing to unpack .../129-libzstd1_1.5.2+dfsg-1_armel.deb ... Unpacking libzstd1:armel (1.5.2+dfsg-1) ... Selecting previously unselected package libcurl3-gnutls:armel. Preparing to unpack .../130-libcurl3-gnutls_7.86.0-2_armel.deb ... Unpacking libcurl3-gnutls:armel (7.86.0-2) ... Selecting previously unselected package libcurl4-gnutls-dev:armel. Preparing to unpack .../131-libcurl4-gnutls-dev_7.86.0-2_armel.deb ... Unpacking libcurl4-gnutls-dev:armel (7.86.0-2) ... Selecting previously unselected package libdeflate0:armel. Preparing to unpack .../132-libdeflate0_1.14-1_armel.deb ... Unpacking libdeflate0:armel (1.14-1) ... Selecting previously unselected package libdeflate-dev:armel. Preparing to unpack .../133-libdeflate-dev_1.14-1_armel.deb ... Unpacking libdeflate-dev:armel (1.14-1) ... Selecting previously unselected package libdisorder0:armel. Preparing to unpack .../134-libdisorder0_0.0.2+git20130809.8062ee1-4+b1_armel.deb ... Unpacking libdisorder0:armel (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libdisorder-dev:armel. Preparing to unpack .../135-libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1_armel.deb ... Unpacking libdisorder-dev:armel (0.0.2+git20130809.8062ee1-4+b1) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../136-libstdc++6_12.2.0-9_armel.deb ... Unpacking libstdc++6:armel (12.2.0-9) ... Selecting previously unselected package libfastahack0:armel. Preparing to unpack .../137-libfastahack0_1.0.0+dfsg-10_armel.deb ... Unpacking libfastahack0:armel (1.0.0+dfsg-10) ... Selecting previously unselected package libfastahack-dev:armel. Preparing to unpack .../138-libfastahack-dev_1.0.0+dfsg-10_armel.deb ... Unpacking libfastahack-dev:armel (1.0.0+dfsg-10) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../139-libgomp1_12.2.0-9_armel.deb ... Unpacking libgomp1:armel (12.2.0-9) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../140-libubsan1_12.2.0-9_armel.deb ... Unpacking libubsan1:armel (12.2.0-9) ... Selecting previously unselected package libgcc-11-dev:armel. Preparing to unpack .../141-libgcc-11-dev_11.3.0-8_armel.deb ... Unpacking libgcc-11-dev:armel (11.3.0-8) ... Selecting previously unselected package libhtscodecs2:armel. Preparing to unpack .../142-libhtscodecs2_1.3.0-4_armel.deb ... Unpacking libhtscodecs2:armel (1.3.0-4) ... Selecting previously unselected package liblzma5:armel. Preparing to unpack .../143-liblzma5_5.2.9-0.0_armel.deb ... Unpacking liblzma5:armel (5.2.9-0.0) ... Selecting previously unselected package libhts3:armel. Preparing to unpack .../144-libhts3_1.16+ds-3_armel.deb ... Unpacking libhts3:armel (1.16+ds-3) ... Selecting previously unselected package liblzma-dev:armel. Preparing to unpack .../145-liblzma-dev_5.2.9-0.0_armel.deb ... Unpacking liblzma-dev:armel (5.2.9-0.0) ... Selecting previously unselected package zlib1g-dev:armel. Preparing to unpack .../146-zlib1g-dev_1%3a1.2.13.dfsg-1_armel.deb ... Unpacking zlib1g-dev:armel (1:1.2.13.dfsg-1) ... Selecting previously unselected package libhts-dev:armel. Preparing to unpack .../147-libhts-dev_1.16+ds-3_armel.deb ... Unpacking libhts-dev:armel (1.16+ds-3) ... Selecting previously unselected package libpkgconf3:amd64. Preparing to unpack .../148-libpkgconf3_1.8.0-11_amd64.deb ... Unpacking libpkgconf3:amd64 (1.8.0-11) ... Selecting previously unselected package libsmithwaterman0:armel. Preparing to unpack .../149-libsmithwaterman0_0.0+git20160702.2610e25-12+b1_armel.deb ... Unpacking libsmithwaterman0:armel (0.0+git20160702.2610e25-12+b1) ... Selecting previously unselected package libsmithwaterman-dev:armel. Preparing to unpack .../150-libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1_armel.deb ... Unpacking libsmithwaterman-dev:armel (0.0+git20160702.2610e25-12+b1) ... Selecting previously unselected package libssw0:armel. Preparing to unpack .../151-libssw0_1.1-13_armel.deb ... Unpacking libssw0:armel (1.1-13) ... Selecting previously unselected package libssw-dev:armel. Preparing to unpack .../152-libssw-dev_1.1-13_armel.deb ... Unpacking libssw-dev:armel (1.1-13) ... Selecting previously unselected package libstdc++-11-dev:armel. Preparing to unpack .../153-libstdc++-11-dev_11.3.0-8_armel.deb ... Unpacking libstdc++-11-dev:armel (11.3.0-8) ... Selecting previously unselected package libtabixpp0:armel. Preparing to unpack .../154-libtabixpp0_1.1.1-1_armel.deb ... Unpacking libtabixpp0:armel (1.1.1-1) ... Selecting previously unselected package libtabixpp-dev:armel. Preparing to unpack .../155-libtabixpp-dev_1.1.1-1_armel.deb ... Unpacking libtabixpp-dev:armel (1.1.1-1) ... Selecting previously unselected package markdown. Preparing to unpack .../156-markdown_1.0.1-12_all.deb ... Unpacking markdown (1.0.1-12) ... Selecting previously unselected package pkgconf-bin. Preparing to unpack .../157-pkgconf-bin_1.8.0-11_amd64.deb ... Unpacking pkgconf-bin (1.8.0-11) ... Selecting previously unselected package pkgconf:armel. Preparing to unpack .../158-pkgconf_1.8.0-11_armel.deb ... Unpacking pkgconf:armel (1.8.0-11) ... Selecting previously unselected package pkg-config:armel. Preparing to unpack .../159-pkg-config_1.8.0-11_armel.deb ... Unpacking pkg-config:armel (1.8.0-11) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../160-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libexpat1:amd64 (2.5.0-1) ... Setting up libpipeline1:amd64 (1.5.7-1) ... Setting up gcc-11-base:armel (11.3.0-8) ... Setting up libfile-which-perl (1.27-2) ... Setting up libpsl5:amd64 (0.21.0-1.2) ... Setting up binutils-arm-linux-gnueabi (2.39-8) ... Setting up libicu72:amd64 (72.1-3) ... Setting up gcc-12-cross-base (12.2.0-9cross2) ... Setting up bsdextrautils (2.38.1-4) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.1) ... Setting up libbrotli1:amd64 (1.0.9-2+b5) ... Setting up libnghttp2-14:amd64 (1.50.0-1+b1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:armel (6.0.10-2) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-10) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libyaml-perl (1.30-2) ... Setting up linux-libc-dev-armel-cross (6.0.6-2cross1) ... Setting up gcc-12-base:armel (12.2.0-9) ... Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.19) ... Setting up libpkgconf3:amd64 (1.8.0-11) ... Setting up libuv1:amd64 (1.44.2-1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libncurses6:amd64 (6.3+20220423-2) ... Setting up autopoint (0.21-10) ... Setting up libjsoncpp25:amd64 (1.9.5-4) ... Setting up pkgconf-bin (1.8.0-11) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-2) ... Setting up libc6-armel-cross (2.36-3cross1) ... Setting up sensible-utils (0.0.17) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up gcc-12-arm-linux-gnueabi-base:amd64 (12.2.0-9cross2) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up cmake-data (3.25.1-1) ... Setting up libc6-dev-armel-cross (2.36-3cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.188-1) ... Setting up cpp-12-arm-linux-gnueabi (12.2.0-9cross2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up liblocale-gettext-perl (1.07-4+b3) ... Setting up libprocps8:amd64 (2:3.3.17-7.1) ... Setting up markdown (1.0.1-12) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.0-2) ... Setting up gettext (0.21-10) ... Setting up libgomp1-armel-cross (12.2.0-9cross2) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.0-1) ... Setting up libgcc-s1-armel-cross (12.2.0-9cross2) ... Setting up libstdc++6-armel-cross (12.2.0-9cross2) ... Setting up libatomic1-armel-cross (12.2.0-9cross2) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-2+b1) ... Setting up pkgconf:armel (1.8.0-11) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up cpp-arm-linux-gnueabi (4:12.2.0-1) ... Setting up libubsan1-armel-cross (12.2.0-9cross2) ... Setting up pkg-config:armel (1.8.0-11) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-2) ... Setting up dwz (0.14+20220924-2) ... Setting up groff-base (1.22.4-9) ... Setting up procps (2:3.3.17-7.1) ... Setting up libcurl4:amd64 (7.86.0-2) ... Setting up libasan8-armel-cross (12.2.0-9cross2) ... Setting up libgcc-12-dev-armel-cross (12.2.0-9cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-12-arm-linux-gnueabi (12.2.0-9cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabi (4:12.2.0-1) ... Setting up cmake (3.25.1-1) ... Setting up libstdc++-12-dev-armel-cross (12.2.0-9cross2) ... Setting up debhelper (13.11.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-12-arm-linux-gnueabi (12.2.0-9cross2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-arm-linux-gnueabi (4:12.2.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.19) ... Setting up dpkg-cross (2.6.19) ... Setting up crossbuild-essential-armel (12.9) ... Setting up libgcc-s1:armel (12.2.0-9) ... Setting up libc6:armel (2.36-6) ... Setting up libffi8:armel (3.4.4-1) ... Setting up libtasn1-6:armel (4.19.0-2) ... Setting up libbz2-1.0:armel (1.0.8-5+b1) ... Setting up libdb5.3:armel (5.3.28+dfsg1-0.10) ... Setting up libstdc++6:armel (12.2.0-9) ... Setting up libhtscodecs2:armel (1.3.0-4) ... Setting up libdisorder0:armel (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libzstd1:armel (1.5.2+dfsg-1) ... Setting up libkeyutils1:armel (1.6.3-1) ... Setting up liblzma5:armel (5.2.9-0.0) ... Setting up libbrotli1:armel (1.0.9-2+b5) ... Setting up libsmithwaterman0:armel (0.0+git20160702.2610e25-12+b1) ... Setting up libnghttp2-14:armel (1.50.0-1+b1) ... Setting up libunistring2:armel (1.0-2) ... Setting up libdeflate0:armel (1.14-1) ... Setting up zlib1g:armel (1:1.2.13.dfsg-1) ... Setting up libcrypt1:armel (1:4.4.33-1) ... Setting up libidn2-0:armel (2.3.3-1+b1) ... Setting up libcom-err2:armel (1.46.6~rc1-1+b1) ... Setting up libgomp1:armel (12.2.0-9) ... Setting up libfastahack0:armel (1.0.0+dfsg-10) ... Setting up libasan6:armel (11.3.0-8) ... Setting up libkrb5support0:armel (1.20.1-1) ... Setting up libsasl2-modules-db:armel (2.1.28+dfsg-10) ... Setting up libfastahack-dev:armel (1.0.0+dfsg-10) ... Setting up libnettle8:armel (3.8.1-2) ... Setting up libgmp10:armel (2:6.2.1+dfsg1-1.1) ... Setting up libp11-kit0:armel (0.24.1-1) ... Setting up libatomic1:armel (12.2.0-9) ... Setting up libk5crypto3:armel (1.20.1-1) ... Setting up libdisorder-dev:armel (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libsasl2-2:armel (2.1.28+dfsg-10) ... Setting up liblzma-dev:armel (5.2.9-0.0) ... Setting up libubsan1:armel (12.2.0-9) ... Setting up libgcc-11-dev:armel (11.3.0-8) ... Setting up libcrypt-dev:armel (1:4.4.33-1) ... Setting up libdeflate-dev:armel (1.14-1) ... Setting up libssw0:armel (1.1-13) ... Setting up libpsl5:armel (0.21.0-1.2) ... Setting up libhogweed6:armel (3.8.1-2) ... Setting up libssw-dev:armel (1.1-13) ... Setting up libssl3:armel (3.0.7-1) ... Setting up libgnutls30:armel (3.7.8-4) ... Setting up librtmp1:armel (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libsmithwaterman-dev:armel (0.0+git20160702.2610e25-12+b1) ... Setting up libssh2-1:armel (1.10.0-3+b1) ... Setting up libkrb5-3:armel (1.20.1-1) ... Setting up libldap-2.5-0:armel (2.5.13+dfsg-2+b1) ... Setting up libgssapi-krb5-2:armel (1.20.1-1) ... Setting up libtirpc3:armel (1.3.3+ds-1) ... Setting up libcurl3-gnutls:armel (7.86.0-2) ... Setting up libcurl4-gnutls-dev:armel (7.86.0-2) ... Setting up libtirpc-dev:armel (1.3.3+ds-1) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libhts3:armel (1.16+ds-3) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libtabixpp0:armel (1.1.1-1) ... Setting up libc6-dev:armel (2.36-6) ... Setting up libbz2-dev:armel (1.0.8-5+b1) ... Setting up libstdc++-11-dev:armel (11.3.0-8) ... Setting up zlib1g-dev:armel (1:1.2.13.dfsg-1) ... Setting up libhts-dev:armel (1.16+ds-3) ... Setting up libtabixpp-dev:armel (1.1.1-1) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.36-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64) Toolchain package versions: binutils_2.39-8 dpkg-dev_1.21.11 g++-11_11.3.0-8 g++-12_12.2.0-9 gcc-11_11.3.0-8 gcc-12_12.2.0-9 libc6-dev_2.36-6 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 linux-libc-dev_6.0.10-2 Package versions: adduser_3.129 apt_2.5.4 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2-2+b1 binutils_2.39-8 binutils-arm-linux-gnueabi_2.39-8 binutils-common_2.39-8 binutils-x86-64-linux-gnu_2.39-8 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-1 cpp-11_11.3.0-8 cpp-12_12.2.0-9 cpp-12-arm-linux-gnueabi_12.2.0-9cross2 cpp-arm-linux-gnueabi_4:12.2.0-1 cross-config_2.6.19 crossbuild-essential-armel_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.80 debhelper_13.11.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-2 diffutils_1:3.8-1 dpkg_1.21.11 dpkg-cross_2.6.19 dpkg-dev_1.21.11 dwz_0.14+20220924-2 e2fsprogs_1.46.6~rc1-1+b1 fakeroot_1.30.1-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-8 g++-12_12.2.0-9 g++-12-arm-linux-gnueabi_12.2.0-9cross2 g++-arm-linux-gnueabi_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-8 gcc-11-base_11.3.0-8 gcc-12_12.2.0-9 gcc-12-arm-linux-gnueabi_12.2.0-9cross2 gcc-12-arm-linux-gnueabi-base_12.2.0-9cross2 gcc-12-base_12.2.0-9 gcc-12-cross-base_12.2.0-9cross2 gcc-9-base_9.5.0-2+b2 gcc-arm-linux-gnueabi_4:12.2.0-1 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-2 libapt-pkg6.0_2.5.4 libarchive-zip-perl_1.68-1 libarchive13_3.6.0-1 libasan6_11.3.0-8 libasan8_12.2.0-9 libasan8-armel-cross_12.2.0-9cross2 libatomic1_12.2.0-9 libatomic1-armel-cross_12.2.0-9cross2 libattr1_1:2.5.1-2 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbinutils_2.39-8 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b5 libbz2-1.0_1.0.8-5+b1 libbz2-dev_1.0.8-5+b1 libc-bin_2.36-6 libc-dev-bin_2.36-6 libc6_2.36-6 libc6-armel-cross_2.36-3cross1 libc6-dev_2.36-6 libc6-dev-armel-cross_2.36-3cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.44-1 libcc1-0_12.2.0-9 libcom-err2_1.46.6~rc1-1+b1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.33-1 libcrypt1_1:4.4.33-1 libctf-nobfd0_2.39-8 libctf0_2.39-8 libcurl3-gnutls_7.86.0-2 libcurl4_7.86.0-2 libcurl4-gnutls-dev_7.86.0-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.265 libdebhelper-perl_13.11.1 libdebian-dpkgcross-perl_2.6.19 libdeflate-dev_1.14-1 libdeflate0_1.14-1 libdisorder-dev_0.0.2+git20130809.8062ee1-4+b1 libdisorder0_0.0.2+git20130809.8062ee1-4+b1 libdpkg-perl_1.21.11 libelf1_0.188-1 libexpat1_2.5.0-1 libext2fs2_1.46.6~rc1-1+b1 libfakeroot_1.30.1-1 libfastahack-dev_1.0.0+dfsg-10 libfastahack0_1.0.0+dfsg-10 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.0-2 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-8 libgcc-12-dev_12.2.0-9 libgcc-12-dev-armel-cross_12.2.0-9cross2 libgcc-s1_12.2.0-9 libgcc-s1-armel-cross_12.2.0-9cross2 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-9 libgomp1-armel-cross_12.2.0-9cross2 libgpg-error0_1.46-1 libgprofng0_2.39-8 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-3.1 libisl23_0.25-1 libitm1_12.2.0-9 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-1 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-2+b1 liblocale-gettext-perl_1.07-4+b3 liblsan0_12.2.0-9 liblz4-1_1.9.4-1 liblzma-dev_5.2.9-0.0 liblzma5_5.2.9-0.0 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libncurses6_6.3+20220423-2 libncursesw6_6.3+20220423-2 libnettle8_3.8.1-2 libnghttp2-14_1.50.0-1+b1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-1 libpam-modules_1.5.2-5 libpam-modules-bin_1.5.2-5 libpam-runtime_1.5.2-5 libpam0g_1.5.2-5 libpcre2-8-0_10.40-3 libpcre3_2:8.39-14 libperl5.34_5.34.0-5 libperl5.36_5.36.0-4 libpipeline1_1.5.7-1 libpkgconf3_1.8.0-11 libprocps8_2:3.3.17-7.1 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-9 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b3 libsemanage-common_3.4-1 libsemanage2_3.4-1+b3 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1 libsmithwaterman0_0.0+git20160702.2610e25-12+b1 libss2_1.46.6~rc1-1+b1 libssh2-1_1.10.0-3+b1 libssl3_3.0.7-1 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.3.0-8 libstdc++-12-dev_12.2.0-9 libstdc++-12-dev-armel-cross_12.2.0-9cross2 libstdc++6_12.2.0-9 libstdc++6-armel-cross_12.2.0-9cross2 libsub-override-perl_0.09-4 libsystemd0_252.2-1 libtabixpp-dev_1.1.1-1 libtabixpp0_1.1.1-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-8 libtsan2_12.2.0-9 libubsan1_12.2.0-9 libubsan1-armel-cross_12.2.0-9cross2 libuchardet0_0.0.7-1 libudev1_252.2-1 libunistring2_1.0-2 libuuid1_2.38.1-4 libuv1_1.44.2-1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.14+dfsg-1.1+b2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.2+dfsg-1 linux-libc-dev_6.0.10-2 linux-libc-dev-armel-cross_6.0.6-2cross1 login_1:4.13+dfsg1-1 logsave_1.46.6~rc1-1+b1 m4_1.4.19-1 make_4.3-4.1 man-db_2.11.1-1 markdown_1.0.1-12 mawk_1.3.4.20200120-3.1 mount_2.38.1-4 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.13+dfsg1-1 patch_2.7.6-7 perl_5.36.0-4 perl-base_5.36.0-4 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-4 pkg-config_1.8.0-11 pkgconf_1.8.0-11 pkgconf-bin_1.8.0-11 po-debconf_1.0.21+nmu1 procps_2:3.3.17-7.1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.05-7 tar_1.34+dfsg-1.1 tzdata_2022f-1 ucf_3.0043 usrmerge_33 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.2.9-0.0 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libvcflib Binary: libvcflib1, libvcflib-dev, libvcflib-tools Architecture: any Version: 1.0.3+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/vcflib/vcflib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, markdown , libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, libgtest-dev , debhelper Package-List: libvcflib-dev deb libdevel optional arch=any libvcflib-tools deb science optional arch=any libvcflib1 deb libs optional arch=any Checksums-Sha1: 0b31c8107f13c5110ef7b1570b76b18868f415f2 7556108 libvcflib_1.0.3+dfsg.orig.tar.xz 73978caba911d75a46e033f6832287b9dcc02a1d 8100 libvcflib_1.0.3+dfsg-2.debian.tar.xz Checksums-Sha256: 34f4692321cbbfc7fa5761f8d61ec50dd44bafa3dc23a6dad82772114e551ddc 7556108 libvcflib_1.0.3+dfsg.orig.tar.xz 90f2687a06bcba4f158d64dccb01d849a532707204f283f23ef9b3cad8d09bac 8100 libvcflib_1.0.3+dfsg-2.debian.tar.xz Files: 02ce10be7db0d791ed63b017cb67829a 7556108 libvcflib_1.0.3+dfsg.orig.tar.xz c18af0929035cae01b94e1da191d6622 8100 libvcflib_1.0.3+dfsg-2.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmNAOFsRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtFLGQ//WYi969YOz00ouxRdiX+HdHQFfbn9FI3q E1H5kOmbWWkF40An3xZ840plWGts2C1GU5oZORkogepKmcRwzia6S1lUAKKLSpGM 1rDQ3aWL0l7vO0shB/aQOPfkrgrfbqlX37Wa7+jCWbuhDWvgSUH30idxu5RP01E9 cFtMlej4queH01VT5zedD+Sokumj5YvMLMOQirlIdwVGQL3zVhYJXjoBcjQj36HR Z87q27rnPJHYgMT3On9zljRPVpJwmWwmNoyuJSMnDchZ/DezasX6VD1+ZQremXAr m2pC6e1vakrblmJBCdZgiqMo4GyVLlzNYAVJP1xF1SAoun8AXvLlYOtnnw5UA1wH Pf3+MH5U7LSHeLzAGBZdEIg3t5LyadxM16ld+ersnJtobET6CnHJxrNfYLmPPtWC JcLUPJPgMtMyct+9e3U6vf0Az3tvG5JqyMRQ4HweOUYN1p9rD3D3Q6yI8feKm9eR x2D5BCZBQE8dRqiAyAsvZb6YFciH1ggdE3j3lm6L8WXIBWo9AAvSe8qwoVyx5l+G uZTu7i8/9D87Ky/bB2I+5AKB+zVRNPHI7g0bqFP9LM8qo6e2zJQvhH7BCjJrCZqJ 5fqP3nc6SUzddWZQv2/EPh68hiCDz1XwHeeZNX131ocFA12DPX2MHXCTe5jl0mdb wdc7g20nTxE= =6nNt -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-gpg-verify.srY6EvSG/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 7 14:31:55 2022 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./libvcflib_1.0.3+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting libvcflib in /<> dpkg-source: info: unpacking libvcflib_1.0.3+dfsg.orig.tar.xz dpkg-source: info: unpacking libvcflib_1.0.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_fsom dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying use_debian_packaged_fastahack.patch dpkg-source: info: applying use_debian_packaged_libssw.patch dpkg-source: info: applying shared_lib.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying tabix_linking dpkg-source: info: applying tests Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-85802c98-ae53-40ff-aee3-41f6f331f28c SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name "*.o" -delete rm -f README.html make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --buildsystem cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON cd obj-arm-linux-gnueabi && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=armv7l -DCMAKE_C_COMPILER=arm-linux-gnueabi-gcc -DCMAKE_CXX_COMPILER=arm-linux-gnueabi-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/arm-linux-gnueabi-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/arm-linux-gnueabi-qmake -DCMAKE_INSTALL_LIBDIR=lib/arm-linux-gnueabi -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/arm-linux-gnueabi-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/arm-linux-gnueabi-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/arm-linux-gnueabi-pkg-config (found version "1.8.0") -- Found BZip2: /usr/lib/arm-linux-gnueabi/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabi/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/arm-linux-gnueabi/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabi/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/arm-linux-gnueabi/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabi/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/arm-linux-gnueabi/liblzma.so - found -- Found LibLZMA: /usr/lib/arm-linux-gnueabi/liblzma.so (found version "5.2.9") -- Found ZLIB: /usr/lib/arm-linux-gnueabi/libz.so (found version "1.2.13") -- -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Checking for module 'htslib' -- Found htslib, version 1.16 -- Checking for module 'tabixpp' -- Package 'tabixpp', required by 'virtual:world', not found -- Checking for module 'libsmithwaterman' -- Found libsmithwaterman, version 0.0 -- Checking for module 'libfastahack' -- Found libfastahack, version 0.0 -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Pandoc needs to be installed to generate the man pages -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-arm-linux-gnueabi make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd obj-arm-linux-gnueabi && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles /<>/obj-arm-linux-gnueabi//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcflib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 0%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /<>/src/Variant.cpp In file included from /<>/src/Variant.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rnglib.cpp.o -MF CMakeFiles/vcflib.dir/src/rnglib.cpp.o.d -o CMakeFiles/vcflib.dir/src/rnglib.cpp.o -c /<>/src/rnglib.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/var.cpp.o -MF CMakeFiles/vcflib.dir/src/var.cpp.o.d -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /<>/src/var.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/var.hpp:17, from /<>/src/var.cpp:20: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:286:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:287:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:288:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:293:26: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:296:26: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:300:26: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:303:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:304:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:305:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:306:26: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:307:26: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void genotype::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:308:26: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘virtual void pooled::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:185:18: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void pooled::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:187:20: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘virtual void pooled::loadPop(std::vector, std::vector > > >&, std::string, long int)’ at /<>/src/var.cpp:188:20: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/pdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/pdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/pdflib.cpp.o -c /<>/src/pdflib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/cdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /<>/src/cdflib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/split.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/split.cpp.o -MF CMakeFiles/vcflib.dir/src/split.cpp.o.d -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /<>/src/split.cpp [ 4%] Building C object CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o /usr/bin/arm-linux-gnueabi-gcc -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -MF CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o.d -o CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -c /<>/filevercmp/filevercmp.c [ 5%] Linking CXX shared library libvcflib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflib.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvcflib.so.1 -o libvcflib.so.1 CMakeFiles/vcflib.dir/src/Variant.cpp.o CMakeFiles/vcflib.dir/src/rnglib.cpp.o CMakeFiles/vcflib.dir/src/var.cpp.o CMakeFiles/vcflib.dir/src/pdflib.cpp.o CMakeFiles/vcflib.dir/src/cdflib.cpp.o CMakeFiles/vcflib.dir/src/split.cpp.o CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -lssw -ltabixpp -lsmithwaterman -ldisorder -lfastahack /usr/bin/cmake -E cmake_symlink_library libvcflib.so.1 libvcflib.so.1 libvcflib.so make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 5%] Built target vcflib make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfecho.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 6%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -MF CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o.d -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /<>/src/vcfecho.cpp In file included from /<>/src/vcfecho.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 6%] Linking CXX executable vcfecho /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 6%] Built target vcfecho make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 6%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -MF CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o.d -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /<>/src/dumpContigsFromHeader.cpp In file included from /<>/src/dumpContigsFromHeader.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 7%] Linking CXX executable dumpContigsFromHeader /usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 7%] Built target dumpContigsFromHeader make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/bFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 7%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/bFst.dir/src/bFst.cpp.o -MF CMakeFiles/bFst.dir/src/bFst.cpp.o.d -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /<>/src/bFst.cpp In file included from /<>/src/bFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void phardy(std::vector&, double, double)’ at /<>/src/bFst.cpp:179:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void phardy(std::vector&, double, double)’ at /<>/src/bFst.cpp:180:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void phardy(std::vector&, double, double)’ at /<>/src/bFst.cpp:181:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadPop(std::vector, std::vector > > >&, pop&)’ at /<>/src/bFst.cpp:73:21: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadPop(std::vector, std::vector > > >&, pop&)’ at /<>/src/bFst.cpp:74:21: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadPop(std::vector, std::vector > > >&, pop&)’ at /<>/src/bFst.cpp:75:21: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘int main(int, char**)’ at /<>/src/bFst.cpp:583:22: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 8%] Linking CXX executable bFst /usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 8%] Built target bFst make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/pVst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 8%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/pVst.dir/src/pVst.cpp.o -MF CMakeFiles/pVst.dir/src/pVst.cpp.o.d -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /<>/src/pVst.cpp In file included from /<>/src/pVst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void calc(copyNcounts*)’ at /<>/src/pVst.cpp:203:21: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void calc(copyNcounts*)’ at /<>/src/pVst.cpp:206:25: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadDat(copyNcounts*, std::string&, std::vector, std::vector > > >&, std::vector, std::vector > > >&)’ at /<>/src/pVst.cpp:265:24: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadDat(copyNcounts*, std::string&, std::vector, std::vector > > >&, std::vector, std::vector > > >&)’ at /<>/src/pVst.cpp:266:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadDat(copyNcounts*, std::string&, std::vector, std::vector > > >&, std::vector, std::vector > > >&)’ at /<>/src/pVst.cpp:274:28: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘void loadDat(copyNcounts*, std::string&, std::vector, std::vector > > >&, std::vector, std::vector > > >&)’ at /<>/src/pVst.cpp:275:23: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 9%] Linking CXX executable pVst /usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 9%] Built target pVst make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/hapLrt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 10%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -MF CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o.d -o CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -c /<>/src/hapLrt.cpp In file included from /<>/src/hapLrt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/hapLrt.cpp:609:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 10%] Linking CXX executable hapLrt /usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 10%] Built target hapLrt make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/popStats.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 11%] Building CXX object CMakeFiles/popStats.dir/src/popStats.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/popStats.dir/src/popStats.cpp.o -MF CMakeFiles/popStats.dir/src/popStats.cpp.o.d -o CMakeFiles/popStats.dir/src/popStats.cpp.o -c /<>/src/popStats.cpp In file included from /<>/src/popStats.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 12%] Linking CXX executable popStats /usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 12%] Built target popStats make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/wcFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 13%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/wcFst.dir/src/wcFst.cpp.o -MF CMakeFiles/wcFst.dir/src/wcFst.cpp.o.d -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /<>/src/wcFst.cpp In file included from /<>/src/wcFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Linking CXX executable wcFst /usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/wcFst.dir/src/wcFst.cpp.o -o wcFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 14%] Built target wcFst make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/iHS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 15%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/iHS.dir/src/iHS.cpp.o -MF CMakeFiles/iHS.dir/src/iHS.cpp.o.d -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /<>/src/iHS.cpp In file included from /<>/src/iHS.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60, from /<>/src/Variant.h:15: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bool gDist(int, int, double*)’ at /<>/src/iHS.cpp:106:40: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bool gDist(int, int, double*)’ at /<>/src/iHS.cpp:106:69: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void loadGeneticMap(int, int)’ at /<>/src/iHS.cpp:151:25: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/iHS.cpp:648:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 15%] Linking CXX executable iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/iHS.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/iHS.dir/src/iHS.cpp.o -o iHS -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 15%] Built target iHS make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/segmentFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/segmentFst.dir/build.make CMakeFiles/segmentFst.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 15%] Building CXX object CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -MF CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o.d -o CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -c /<>/src/segmentFst.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/split.h:15, from /<>/src/segmentFst.cpp:59: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘int main(int, char**)’ at /<>/src/segmentFst.cpp:294:21: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 16%] Linking CXX executable segmentFst /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentFst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/segmentFst.dir/src/segmentFst.cpp.o -o segmentFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 16%] Built target segmentFst make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/segmentIhs.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/segmentIhs.dir/build.make CMakeFiles/segmentIhs.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 16%] Building CXX object CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -MF CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o.d -o CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -c /<>/src/segmentIhs.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/split.h:15, from /<>/src/segmentIhs.cpp:59: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘int main(int, char**)’ at /<>/src/segmentIhs.cpp:291:21: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 17%] Linking CXX executable segmentIhs /usr/bin/cmake -E cmake_link_script CMakeFiles/segmentIhs.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/segmentIhs.dir/src/segmentIhs.cpp.o -o segmentIhs -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 17%] Built target segmentIhs make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/genotypeSummary.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/genotypeSummary.dir/build.make CMakeFiles/genotypeSummary.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 18%] Building CXX object CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -MF CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o.d -o CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -c /<>/src/genotypeSummary.cpp In file included from /<>/src/genotypeSummary.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Linking CXX executable genotypeSummary /usr/bin/cmake -E cmake_link_script CMakeFiles/genotypeSummary.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/genotypeSummary.dir/src/genotypeSummary.cpp.o -o genotypeSummary -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 18%] Built target genotypeSummary make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/sequenceDiversity.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/sequenceDiversity.dir/build.make CMakeFiles/sequenceDiversity.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 18%] Building CXX object CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -MF CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o.d -o CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -c /<>/src/sequenceDiversity.cpp In file included from /<>/src/sequenceDiversity.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 19%] Linking CXX executable sequenceDiversity /usr/bin/cmake -E cmake_link_script CMakeFiles/sequenceDiversity.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/sequenceDiversity.dir/src/sequenceDiversity.cpp.o -o sequenceDiversity -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 19%] Built target sequenceDiversity make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/pFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 19%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/pFst.dir/src/pFst.cpp.o -MF CMakeFiles/pFst.dir/src/pFst.cpp.o.d -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /<>/src/pFst.cpp In file included from /<>/src/pFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Linking CXX executable pFst /usr/bin/cmake -E cmake_link_script CMakeFiles/pFst.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pFst.dir/src/pFst.cpp.o -o pFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 20%] Built target pFst make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/smoother.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/smoother.dir/build.make CMakeFiles/smoother.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 21%] Building CXX object CMakeFiles/smoother.dir/src/smoother.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/smoother.dir/src/smoother.cpp.o -MF CMakeFiles/smoother.dir/src/smoother.cpp.o.d -o CMakeFiles/smoother.dir/src/smoother.cpp.o -c /<>/src/smoother.cpp [ 21%] Linking CXX executable smoother /usr/bin/cmake -E cmake_link_script CMakeFiles/smoother.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/smoother.dir/src/smoother.cpp.o -o smoother -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 21%] Built target smoother make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfld.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfld.dir/build.make CMakeFiles/vcfld.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 22%] Building CXX object CMakeFiles/vcfld.dir/src/vcfld.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfld.dir/src/vcfld.cpp.o -MF CMakeFiles/vcfld.dir/src/vcfld.cpp.o.d -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /<>/src/vcfld.cpp In file included from /<>/src/vcfld.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 23%] Linking CXX executable vcfld /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfld.dir/src/vcfld.cpp.o -o vcfld -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 23%] Built target vcfld make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/plotHaps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 24%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -MF CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o.d -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /<>/src/plotHaps.cpp In file included from /<>/src/plotHaps.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/plotHaps.cpp:375:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 24%] Linking CXX executable plotHaps /usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 24%] Built target plotHaps make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/abba-baba.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 24%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -MF CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o.d -o CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -c /<>/src/abba-baba.cpp In file included from /<>/src/abba-baba.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 25%] Linking CXX executable abba-baba /usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o" -o abba-baba -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 25%] Built target abba-baba make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 26%] Building CXX object CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -MF CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o.d -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /<>/src/permuteGPAT++.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/split.h:15, from /<>/src/permuteGPAT++.cpp:49: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/permuteGPAT++.cpp:184:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 26%] Linking CXX executable permuteGPAT++ /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 26%] Built target permuteGPAT++ make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/permuteSmooth.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 27%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -MF CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o.d -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /<>/src/permuteSmooth.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/split.h:15, from /<>/src/permuteSmooth.cpp:49: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘bool getContiguousWindow(std::vector&, std::vector&, int, int*)’ at /<>/src/permuteSmooth.cpp:249:19: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 27%] Linking CXX executable permuteSmooth /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 27%] Built target permuteSmooth make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/normalize-iHS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 27%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -MF CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o.d -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /<>/src/normalize-iHS.cpp In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70, from /<>/src/split.h:15, from /<>/src/normalize-iHS.cpp:59: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘void normalize(std::vector&, int*)’ at /<>/src/normalize-iHS.cpp:229:21: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 28%] Linking CXX executable normalize-iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o" -o normalize-iHS -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 28%] Built target normalize-iHS make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/meltEHH.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 29%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -MF CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o.d -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /<>/src/meltEHH.cpp In file included from /<>/src/meltEHH.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60, from /<>/src/Variant.h:15: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bool gDist(int, int, double*)’ at /<>/src/meltEHH.cpp:105:40: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘bool gDist(int, int, double*)’ at /<>/src/meltEHH.cpp:105:69: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = int; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘void loadGeneticMap(int, int)’ at /<>/src/meltEHH.cpp:150:25: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/meltEHH.cpp:636:20: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 30%] Linking CXX executable meltEHH /usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -o meltEHH -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 30%] Built target meltEHH make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfaltcount.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 31%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -MF CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o.d -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /<>/src/vcfaltcount.cpp In file included from /<>/src/vcfaltcount.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 31%] Linking CXX executable vcfaltcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -o vcfaltcount -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 31%] Built target vcfaltcount make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfhetcount.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 32%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -MF CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o.d -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /<>/src/vcfhetcount.cpp In file included from /<>/src/vcfhetcount.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Linking CXX executable vcfhetcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -o vcfhetcount -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 32%] Built target vcfhetcount make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 33%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -MF CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o.d -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /<>/src/vcfhethomratio.cpp In file included from /<>/src/vcfhethomratio.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX executable vcfhethomratio /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -o vcfhethomratio -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 33%] Built target vcfhethomratio make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcffilter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 34%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -MF CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o.d -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /<>/src/vcffilter.cpp In file included from /<>/src/vcffilter.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX executable vcffilter /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffilter.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 35%] Built target vcffilter make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcf2tsv.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 36%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -MF CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o.d -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /<>/src/vcf2tsv.cpp In file included from /<>/src/vcf2tsv.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX executable vcf2tsv /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2tsv.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 37%] Built target vcf2tsv make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 37%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -MF CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o.d -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /<>/src/vcfgenotypes.cpp In file included from /<>/src/vcfgenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 38%] Linking CXX executable vcfgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypes.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -o vcfgenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 38%] Built target vcfgenotypes make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfannotategenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 39%] Building CXX object CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -MF CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o.d -o CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -c /<>/src/vcfannotategenotypes.cpp In file included from /<>/src/vcfannotategenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60, from /<>/src/Variant.h:15: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::allocator >, std::__cxx11::basic_string, std::allocator > >&&>, std::tuple<>}; _Key = std::pair, std::__cxx11::basic_string >; _Val = std::pair, std::__cxx11::basic_string >, vcflib::Variant>; _KeyOfValue = std::_Select1st, std::__cxx11::basic_string >, vcflib::Variant> >; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, vcflib::Variant> >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, vcflib::Variant>, std::_Select1st, std::__cxx11::basic_string >, vcflib::Variant> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, vcflib::Variant> > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::pair, std::__cxx11::basic_string >; _Tp = vcflib::Variant; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, vcflib::Variant> >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, vcflib::Variant>, std::_Select1st, std::__cxx11::basic_string >, vcflib::Variant> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, vcflib::Variant> > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfannotategenotypes.cpp:202:28: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfannotategenotypes.cpp:201:28: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::pair, std::__cxx11::basic_string >; _Tp = vcflib::Variant; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, vcflib::Variant> >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfannotategenotypes.cpp:215:62: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, vcflib::Variant>, std::_Select1st, std::__cxx11::basic_string >, vcflib::Variant> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, vcflib::Variant> > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = std::pair, std::__cxx11::basic_string >; _Tp = vcflib::Variant; _Compare = std::less, std::__cxx11::basic_string > >; _Alloc = std::allocator, std::__cxx11::basic_string >, vcflib::Variant> >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfannotategenotypes.cpp:218:62: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::__cxx11::basic_string >, std::pair, std::__cxx11::basic_string >, vcflib::Variant>, std::_Select1st, std::__cxx11::basic_string >, vcflib::Variant> >, std::less, std::__cxx11::basic_string > >, std::allocator, std::__cxx11::basic_string >, vcflib::Variant> > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 40%] Linking CXX executable vcfannotategenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 40%] Built target vcfannotategenotypes make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 41%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -MF CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o.d -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /<>/src/vcfcommonsamples.cpp In file included from /<>/src/vcfcommonsamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX executable vcfcommonsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcommonsamples.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 42%] Built target vcfcommonsamples make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 42%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -MF CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o.d -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /<>/src/vcfremovesamples.cpp In file included from /<>/src/vcfremovesamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX executable vcfremovesamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremovesamples.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 43%] Built target vcfremovesamples make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 44%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -MF CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o.d -o CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -c /<>/src/vcfkeepsamples.cpp In file included from /<>/src/vcfkeepsamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 44%] Linking CXX executable vcfkeepsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepsamples.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 44%] Built target vcfkeepsamples make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 45%] Building CXX object CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -MF CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o.d -o CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -c /<>/src/vcfsamplenames.cpp In file included from /<>/src/vcfsamplenames.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX executable vcfsamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 46%] Built target vcfsamplenames make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 46%] Building CXX object CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -MF CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o.d -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /<>/src/vcfgenotypecompare.cpp In file included from /<>/src/vcfgenotypecompare.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX executable vcfgenotypecompare /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 47%] Built target vcfgenotypecompare make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcffixup.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 47%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -MF CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o.d -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /<>/src/vcffixup.cpp In file included from /<>/src/vcffixup.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX executable vcffixup /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 48%] Built target vcffixup make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfclassify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 49%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -MF CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o.d -o CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -c /<>/src/vcfclassify.cpp In file included from /<>/src/vcfclassify.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX executable vcfclassify /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 49%] Built target vcfclassify make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 50%] Building CXX object CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -MF CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o.d -o CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -c /<>/src/vcfsamplediff.cpp In file included from /<>/src/vcfsamplediff.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Linking CXX executable vcfsamplediff /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 50%] Built target vcfsamplediff make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 50%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -MF CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o.d -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /<>/src/vcfremoveaberrantgenotypes.cpp In file included from /<>/src/vcfremoveaberrantgenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX executable vcfremoveaberrantgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 51%] Built target vcfremoveaberrantgenotypes make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfrandom.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 52%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -MF CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o.d -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /<>/src/vcfrandom.cpp In file included from /<>/src/vcfrandom.cpp:13: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/string:48, from /usr/arm-linux-gnueabi/include/c++/12/bits/locale_classes.h:40, from /usr/arm-linux-gnueabi/include/c++/12/bits/ios_base.h:41, from /usr/arm-linux-gnueabi/include/c++/12/ios:42, from /usr/arm-linux-gnueabi/include/c++/12/istream:38, from /usr/arm-linux-gnueabi/include/c++/12/sstream:38, from /<>/src/vcfrandom.cpp:10: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Linking CXX executable vcfrandom /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 52%] Built target vcfrandom make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfparsealts.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 52%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /<>/src/vcfparsealts.cpp In file included from /<>/src/vcfparsealts.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 53%] Linking CXX executable vcfparsealts /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -o vcfparsealts -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 53%] Built target vcfparsealts make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfstats.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 53%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /<>/src/vcfstats.cpp In file included from /<>/src/vcfstats.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Linking CXX executable vcfstats /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -o vcfstats -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 54%] Built target vcfstats make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfflatten.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 54%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -MF CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o.d -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /<>/src/vcfflatten.cpp In file included from /<>/src/vcfflatten.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 55%] Linking CXX executable vcfflatten /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -o vcfflatten -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 55%] Built target vcfflatten make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfprimers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 56%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -MF CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o.d -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /<>/src/vcfprimers.cpp In file included from /<>/src/vcfprimers.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Linking CXX executable vcfprimers /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 56%] Built target vcfprimers make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfnumalt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 56%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -MF CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o.d -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /<>/src/vcfnumalt.cpp In file included from /<>/src/vcfnumalt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX executable vcfnumalt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 57%] Built target vcfnumalt make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 58%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /<>/src/vcfcleancomplex.cpp In file included from /<>/src/vcfcleancomplex.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX executable vcfcleancomplex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -o vcfcleancomplex -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 58%] Built target vcfcleancomplex make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfintersect.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 58%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -MF CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o.d -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /<>/src/vcfintersect.cpp In file included from /<>/src/vcfintersect.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX executable vcfintersect /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 59%] Built target vcfintersect make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfannotate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 60%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -MF CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o.d -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /<>/src/vcfannotate.cpp In file included from /<>/src/vcfannotate.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable vcfannotate /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 60%] Built target vcfannotate make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfallelicprimitives.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 61%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -c /<>/src/vcfallelicprimitives.cpp In file included from /<>/src/vcfallelicprimitives.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60, from /<>/src/Variant.h:15: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = vcflib::VariantAllele; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = vcflib::VariantAllele; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long unsigned int; _Val = std::pair; _KeyOfValue = std::_Select1st >; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = vcflib::Variant; _Compare = std::less; _Alloc = std::allocator >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = vcflib::VariantAllele; _Tp = double; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfallelicprimitives.cpp:207:46: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long unsigned int; _Tp = vcflib::Variant; _Compare = std::less; _Alloc = std::allocator >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfallelicprimitives.cpp:306:46: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree, std::_Select1st >, std::less, std::allocator > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 61%] Linking CXX executable vcfallelicprimitives /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -o vcfallelicprimitives -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 61%] Built target vcfallelicprimitives make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfoverlay.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 61%] Building CXX object CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -MF CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o.d -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /<>/src/vcfoverlay.cpp In file included from /<>/src/vcfoverlay.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX executable vcfoverlay /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfoverlay.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 62%] Built target vcfoverlay make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 62%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -MF CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o.d -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /<>/src/vcfaddinfo.cpp In file included from /<>/src/vcfaddinfo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX executable vcfaddinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaddinfo.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 63%] Built target vcfaddinfo make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 64%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -MF CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o.d -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /<>/src/vcfkeepinfo.cpp In file included from /<>/src/vcfkeepinfo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Linking CXX executable vcfkeepinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 64%] Built target vcfkeepinfo make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 65%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -MF CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o.d -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /<>/src/vcfkeepgeno.cpp In file included from /<>/src/vcfkeepgeno.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX executable vcfkeepgeno /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 65%] Built target vcfkeepgeno make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfafpath.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 65%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -MF CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o.d -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /<>/src/vcfafpath.cpp In file included from /<>/src/vcfafpath.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfafpath.cpp:78:26: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 66%] Linking CXX executable vcfafpath /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 66%] Built target vcfafpath make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 66%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -MF CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o.d -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /<>/src/vcfcountalleles.cpp In file included from /<>/src/vcfcountalleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX executable vcfcountalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -o vcfcountalleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 67%] Built target vcfcountalleles make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcflength.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 67%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcflength.dir/src/vcflength.cpp.o -MF CMakeFiles/vcflength.dir/src/vcflength.cpp.o.d -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /<>/src/vcflength.cpp In file included from /<>/src/vcflength.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX executable vcflength /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 68%] Built target vcflength make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfdistance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 68%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -MF CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o.d -o CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -c /<>/src/vcfdistance.cpp In file included from /<>/src/vcfdistance.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Linking CXX executable vcfdistance /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 69%] Built target vcfdistance make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 70%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -MF CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o.d -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /<>/src/vcfrandomsample.cpp In file included from /<>/src/vcfrandomsample.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Linking CXX executable vcfrandomsample /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 71%] Built target vcfrandomsample make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfentropy.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 72%] Building CXX object CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -MF CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o.d -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /<>/src/vcfentropy.cpp In file included from /<>/src/vcfentropy.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Linking CXX executable vcfentropy /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 72%] Built target vcfentropy make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfglxgt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 73%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -MF CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o.d -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /<>/src/vcfglxgt.cpp In file included from /<>/src/vcfglxgt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 73%] Linking CXX executable vcfglxgt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglxgt.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -o vcfglxgt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 73%] Built target vcfglxgt make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfroc.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 74%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /<>/src/vcfroc.cpp In file included from /<>/src/vcfroc.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/map:60, from /<>/src/Variant.h:15: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long double; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 2457 | _Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long double; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h: In member function ‘std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::iterator std::_Rb_tree<_Key, _Val, _KeyOfValue, _Compare, _Alloc>::_M_emplace_hint_unique(const_iterator, _Args&& ...) [with _Args = {const std::piecewise_construct_t&, std::tuple, std::tuple<>}; _Key = long double; _Val = std::pair >; _KeyOfValue = std::_Select1st > >; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_tree.h:2457:7: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 In file included from /usr/arm-linux-gnueabi/include/c++/12/map:61: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h: In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:257:33: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:278:52: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:305:50: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:306:63: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:314:50: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](const key_type&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:316:63: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:511:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 511 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 512 | std::tuple(__k), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 513 | std::tuple<>()); | ~~~~~~~~~~~~~~~ In member function ‘std::map<_Key, _Tp, _Compare, _Alloc>::mapped_type& std::map<_Key, _Tp, _Compare, _Alloc>::operator[](key_type&&) [with _Key = long double; _Tp = std::vector; _Compare = std::less; _Alloc = std::allocator > >]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfroc.cpp:384:88: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_map.h:530:44: note: parameter passing for argument of type ‘std::_Rb_tree >, std::_Select1st > >, std::less, std::allocator > > >::const_iterator’ changed in GCC 7.1 530 | __i = _M_t._M_emplace_hint_unique(__i, std::piecewise_construct, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 531 | std::forward_as_tuple(std::move(__k)), | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 532 | std::tuple<>()); | ~~~~~~~~~~~~~~~ [ 74%] Linking CXX executable vcfroc /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -o vcfroc -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 74%] Built target vcfroc make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcheck.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 74%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -MF CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o.d -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /<>/src/vcfcheck.cpp In file included from /<>/src/vcfcheck.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX executable vcfcheck /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 75%] Built target vcfcheck make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 75%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -MF CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o.d -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /<>/src/vcfstreamsort.cpp In file included from /<>/src/vcfstreamsort.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfstreamsort.cpp:117:71: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 76%] Linking CXX executable vcfstreamsort /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 76%] Built target vcfstreamsort make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfuniq.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 77%] Building CXX object CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -MF CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o.d -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /<>/src/vcfuniq.cpp In file included from /<>/src/vcfuniq.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX executable vcfuniq /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 77%] Built target vcfuniq make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 78%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -MF CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o.d -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /<>/src/vcfuniqalleles.cpp In file included from /<>/src/vcfuniqalleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Linking CXX executable vcfuniqalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 78%] Built target vcfuniqalleles make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfremap.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 78%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -MF CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o.d -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /<>/src/vcfremap.cpp In file included from /<>/src/vcfremap.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable vcfremap /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 79%] Built target vcfremap make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcf2fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 80%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -MF CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o.d -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /<>/src/vcf2fasta.cpp In file included from /<>/src/vcf2fasta.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 80%] Linking CXX executable vcf2fasta /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 80%] Built target vcf2fasta make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 80%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -MF CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o.d -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /<>/src/vcfsitesummarize.cpp In file included from /<>/src/vcfsitesummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Linking CXX executable vcfsitesummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 81%] Built target vcfsitesummarize make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 81%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -MF CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o.d -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /<>/src/vcfbreakmulti.cpp In file included from /<>/src/vcfbreakmulti.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfbreakmulti.cpp:100:31: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 82%] Linking CXX executable vcfbreakmulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfbreakmulti.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 82%] Built target vcfbreakmulti make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcreatemulti.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 82%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -MF CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o.d -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /<>/src/vcfcreatemulti.cpp In file included from /<>/src/vcfcreatemulti.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 83%] Linking CXX executable vcfcreatemulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 83%] Built target vcfcreatemulti make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfevenregions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 84%] Building CXX object CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -MF CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o.d -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /<>/src/vcfevenregions.cpp In file included from /<>/src/vcfevenregions.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Linking CXX executable vcfevenregions /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 84%] Built target vcfevenregions make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 84%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -MF CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o.d -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /<>/src/vcfcat.cpp In file included from /<>/src/vcfcat.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Linking CXX executable vcfcat /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 85%] Built target vcfcat make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 86%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -MF CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o.d -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /<>/src/vcfgenosummarize.cpp In file included from /<>/src/vcfgenosummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Linking CXX executable vcfgenosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 87%] Built target vcfgenosummarize make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 88%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -MF CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o.d -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c /<>/src/vcfgenosamplenames.cpp In file included from /<>/src/vcfgenosamplenames.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Linking CXX executable vcfgenosamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 88%] Built target vcfgenosamplenames make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 89%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -MF CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o.d -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /<>/src/vcfgeno2haplo.cpp In file included from /<>/src/vcfgeno2haplo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const vcflib::Variant&}; _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = vcflib::Variant; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 89%] Linking CXX executable vcfgeno2haplo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -o vcfgeno2haplo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 89%] Built target vcfgeno2haplo make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfleftalign.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 89%] Building CXX object CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -MF CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o.d -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /<>/src/vcfleftalign.cpp In file included from /<>/src/vcfleftalign.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In member function ‘void std::vector<_Tp, _Alloc>::emplace_back(_Args&& ...) [with _Args = {double}; _Tp = double; _Alloc = std::allocator]’, inlined from ‘void std::vector<_Tp, _Alloc>::push_back(value_type&&) [with _Tp = double; _Alloc = std::allocator]’ at /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1294:21, inlined from ‘double entropy(const std::string&)’ at /<>/src/vcfleftalign.cpp:140:24: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:123:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 123 | _M_realloc_insert(end(), std::forward<_Args>(__args)...); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ [ 90%] Linking CXX executable vcfleftalign /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfleftalign.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -o vcfleftalign -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 90%] Built target vcfleftalign make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfcombine.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 91%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -MF CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o.d -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /<>/src/vcfcombine.cpp In file included from /<>/src/vcfcombine.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Linking CXX executable vcfcombine /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 91%] Built target vcfcombine make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 92%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -MF CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o.d -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /<>/src/vcfgeno2alleles.cpp In file included from /<>/src/vcfgeno2alleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable vcfgeno2alleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 92%] Built target vcfgeno2alleles make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfindex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 93%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -MF CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o.d -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /<>/src/vcfindex.cpp In file included from /<>/src/vcfindex.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Linking CXX executable vcfindex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 94%] Built target vcfindex make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcf2dag.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 95%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -MF CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o.d -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /<>/src/vcf2dag.cpp In file included from /<>/src/vcf2dag.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 95%] Linking CXX executable vcf2dag /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 95%] Built target vcf2dag make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfsample2info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 96%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -MF CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o.d -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /<>/src/vcfsample2info.cpp In file included from /<>/src/vcfsample2info.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/queue:62, from /<>/src/Variant.h:23: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfsample2info.cpp:194:31: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 96%] Linking CXX executable vcfsample2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 96%] Built target vcfsample2info make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfqual2info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 97%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -MF CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o.d -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /<>/src/vcfqual2info.cpp In file included from /<>/src/vcfqual2info.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable vcfqual2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 97%] Built target vcfqual2info make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 97%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -MF CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o.d -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /<>/src/vcfinfo2qual.cpp In file included from /<>/src/vcfinfo2qual.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Linking CXX executable vcfinfo2qual /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 98%] Built target vcfinfo2qual make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfglbound.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 98%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -MF CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o.d -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /<>/src/vcfglbound.cpp In file included from /<>/src/vcfglbound.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfglbound.cpp:137:34: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [ 99%] Linking CXX executable vcfglbound /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [ 99%] Built target vcfglbound make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' cd /<>/obj-arm-linux-gnueabi && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi /<>/obj-arm-linux-gnueabi/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build make[4]: Entering directory '/<>/obj-arm-linux-gnueabi' [ 99%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o /usr/bin/arm-linux-gnueabi-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -MF CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o.d -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /<>/src/vcfinfosummarize.cpp In file included from /<>/src/vcfinfosummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/bits/refwrap.h:39, from /usr/arm-linux-gnueabi/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/arm-linux-gnueabi/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/queue:62, from /<>/src/Variant.h:23: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h: In function ‘void std::__adjust_heap(_RandomAccessIterator, _Distance, _Distance, _Tp, _Compare) [with _RandomAccessIterator = __gnu_cxx::__normal_iterator >; _Distance = int; _Tp = double; _Compare = __gnu_cxx::__ops::_Iter_less_iter]’: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_heap.h:224:5: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 224 | __adjust_heap(_RandomAccessIterator __first, _Distance __holeIndex, | ^~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:70: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc: In member function ‘void std::vector<_Tp, _Alloc>::_M_realloc_insert(iterator, _Args&& ...) [with _Args = {const double&}; _Tp = double; _Alloc = std::allocator]’: /usr/arm-linux-gnueabi/include/c++/12/bits/vector.tcc:439:7: note: parameter passing for argument of type ‘std::vector::iterator’ changed in GCC 7.1 439 | vector<_Tp, _Alloc>:: | ^~~~~~~~~~~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/c++/12/vector:64: In member function ‘void std::vector<_Tp, _Alloc>::push_back(const value_type&) [with _Tp = double; _Alloc = std::allocator]’, inlined from ‘int main(int, char**)’ at /<>/src/vcfinfosummarize.cpp:204:31: /usr/arm-linux-gnueabi/include/c++/12/bits/stl_vector.h:1287:28: note: parameter passing for argument of type ‘__gnu_cxx::__normal_iterator >’ changed in GCC 7.1 1287 | _M_realloc_insert(end(), __x); | ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~ [100%] Linking CXX executable vcfinfosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1 /usr/bin/arm-linux-gnueabi-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-arm-linux-gnueabi' [100%] Built target vcfinfosummarize make[3]: Leaving directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -E cmake_progress_start /<>/obj-arm-linux-gnueabi/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' markdown README.md > README.html make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-arm-linux-gnueabi && make -j1 install DESTDIR=/<>/libvcflib-1.0.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-arm-linux-gnueabi' /usr/bin/cmake -S/<> -B/<>/obj-arm-linux-gnueabi --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-arm-linux-gnueabi' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-arm-linux-gnueabi' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/vcfecho -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfecho" to "" -- Installing: /<>/debian/tmp/usr/bin/dumpContigsFromHeader -- Set runtime path of "/<>/debian/tmp/usr/bin/dumpContigsFromHeader" to "" -- Installing: /<>/debian/tmp/usr/bin/bFst -- Set runtime path of "/<>/debian/tmp/usr/bin/bFst" to "" -- Installing: /<>/debian/tmp/usr/bin/pVst -- Set runtime path of "/<>/debian/tmp/usr/bin/pVst" to "" -- Installing: /<>/debian/tmp/usr/bin/hapLrt -- Set runtime path of "/<>/debian/tmp/usr/bin/hapLrt" to "" -- Installing: /<>/debian/tmp/usr/bin/popStats -- Set runtime path of "/<>/debian/tmp/usr/bin/popStats" to "" -- Installing: /<>/debian/tmp/usr/bin/wcFst -- Set runtime path of "/<>/debian/tmp/usr/bin/wcFst" to "" -- Installing: /<>/debian/tmp/usr/bin/iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentFst -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentFst" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentIhs -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentIhs" to "" -- Installing: /<>/debian/tmp/usr/bin/genotypeSummary -- Set runtime path of "/<>/debian/tmp/usr/bin/genotypeSummary" to "" -- Installing: /<>/debian/tmp/usr/bin/sequenceDiversity -- Set runtime path of "/<>/debian/tmp/usr/bin/sequenceDiversity" to "" -- Installing: /<>/debian/tmp/usr/bin/pFst -- Set runtime path of "/<>/debian/tmp/usr/bin/pFst" to "" -- Installing: /<>/debian/tmp/usr/bin/smoother -- Set runtime path of "/<>/debian/tmp/usr/bin/smoother" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfld -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfld" to "" -- Installing: /<>/debian/tmp/usr/bin/plotHaps -- Set runtime path of "/<>/debian/tmp/usr/bin/plotHaps" to "" -- Installing: /<>/debian/tmp/usr/bin/abba-baba -- Set runtime path of "/<>/debian/tmp/usr/bin/abba-baba" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteGPAT++ -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteGPAT++" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteSmooth -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteSmooth" to "" -- Installing: /<>/debian/tmp/usr/bin/normalize-iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/normalize-iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/meltEHH -- Set runtime path of "/<>/debian/tmp/usr/bin/meltEHH" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaltcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaltcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhetcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhetcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhethomratio -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhethomratio" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffilter -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffilter" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2tsv -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2tsv" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotategenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotategenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcommonsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcommonsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremovesamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremovesamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypecompare -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypecompare" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffixup -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffixup" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfclassify -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfclassify" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplediff -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplediff" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandom -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandom" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfparsealts -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfparsealts" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstats -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstats" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfflatten -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfflatten" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfprimers -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfprimers" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnumalt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfnumalt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcleancomplex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcleancomplex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfintersect -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfintersect" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotate -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotate" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfallelicprimitives -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfallelicprimitives" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfoverlay -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfoverlay" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaddinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaddinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepgeno -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepgeno" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfafpath -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfafpath" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcountalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcountalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcflength -- Set runtime path of "/<>/debian/tmp/usr/bin/vcflength" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfdistance -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfdistance" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandomsample -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandomsample" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfentropy -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfentropy" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglxgt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglxgt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfroc -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfroc" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcheck -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcheck" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstreamsort -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstreamsort" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniq -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniq" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniqalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniqalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremap -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremap" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2fasta -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2fasta" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsitesummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsitesummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfbreakmulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfbreakmulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcreatemulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcreatemulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfevenregions -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfevenregions" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcat -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcat" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2haplo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2haplo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfleftalign -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfleftalign" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcombine -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcombine" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2alleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2alleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfindex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfindex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2dag -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2dag" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsample2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsample2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfqual2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfqual2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfo2qual -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfo2qual" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglbound -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglbound" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/bed2region -- Installing: /<>/debian/tmp/usr/bin/bgziptabix -- Installing: /<>/debian/tmp/usr/bin/vcf2bed.py -- Installing: /<>/debian/tmp/usr/bin/vcf2sqlite.py -- Installing: /<>/debian/tmp/usr/bin/vcfbiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfclearid -- Installing: /<>/debian/tmp/usr/bin/vcfclearinfo -- Installing: /<>/debian/tmp/usr/bin/vcfcomplex -- Installing: /<>/debian/tmp/usr/bin/vcffirstheader -- Installing: /<>/debian/tmp/usr/bin/vcfgtcompare.sh -- Installing: /<>/debian/tmp/usr/bin/vcfindelproximity -- Installing: /<>/debian/tmp/usr/bin/vcfindels -- Installing: /<>/debian/tmp/usr/bin/vcfjoincalls -- Installing: /<>/debian/tmp/usr/bin/vcfmultiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfmultiway -- Installing: /<>/debian/tmp/usr/bin/vcfmultiwayscripts -- Installing: /<>/debian/tmp/usr/bin/vcfnobiallelicsnps -- Installing: /<>/debian/tmp/usr/bin/vcfnoindels -- Installing: /<>/debian/tmp/usr/bin/vcfnosnps -- Installing: /<>/debian/tmp/usr/bin/vcfnulldotslashdot -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfplotsitediscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplottstv.sh -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfqualfilter -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_and_cut -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_pipe -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_uncompressed -- Installing: /<>/debian/tmp/usr/bin/vcfremovenonATGC -- Installing: /<>/debian/tmp/usr/bin/vcfsnps -- Installing: /<>/debian/tmp/usr/bin/vcfsort -- Installing: /<>/debian/tmp/usr/bin/vcf_strip_extra_headers -- Installing: /<>/debian/tmp/usr/bin/vcfvarstats -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libvcflib.so.1 -- Installing: /<>/debian/tmp/usr/lib/arm-linux-gnueabi/libvcflib.so -- Installing: /<>/debian/tmp/usr/include/filevercmp.h -- Installing: /<>/debian/tmp/usr/include/IntervalTree.h -- Installing: /<>/debian/tmp/usr/include/catch.hpp -- Installing: /<>/debian/tmp/usr/include/multichoose.h -- Installing: /<>/debian/tmp/usr/include/multipermute.h -- Installing: /<>/debian/tmp/usr/include/BedReader.h -- Installing: /<>/debian/tmp/usr/include/Variant.h -- Installing: /<>/debian/tmp/usr/include/cdflib.hpp -- Installing: /<>/debian/tmp/usr/include/convert.h -- Installing: /<>/debian/tmp/usr/include/gpatInfo.hpp -- Installing: /<>/debian/tmp/usr/include/join.h -- Installing: /<>/debian/tmp/usr/include/makeUnique.h -- Installing: /<>/debian/tmp/usr/include/mt19937ar.h -- Installing: /<>/debian/tmp/usr/include/pdflib.hpp -- Installing: /<>/debian/tmp/usr/include/rnglib.hpp -- Installing: /<>/debian/tmp/usr/include/split.h -- Installing: /<>/debian/tmp/usr/include/var.hpp -- Installing: /<>/debian/tmp/usr/include/vec128int.h -- Installing: /<>/debian/tmp/usr/include/veclib_types.h -- Installing: /<>/debian/tmp/usr/man/man1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhethomratio.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcommonsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfleftalign.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsample2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/meltEHH.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfprimers.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfafpath.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2dag.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepgeno.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcountalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfo2qual.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfdistance.1 -- Installing: /<>/debian/tmp/usr/man/man1/normalize-iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhetcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffixup.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotate.1 -- Installing: /<>/debian/tmp/usr/man/man1/wcFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypecompare.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfbreakmulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflength.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteGPAT++.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsitesummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/plotHaps.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremoveaberrantgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/bFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/hapLrt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstreamsort.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplediff.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaltcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandom.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfoverlay.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnumalt.1 -- Installing: /<>/debian/tmp/usr/man/man1/genotypeSummary.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfflatten.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcleancomplex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotategenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremap.1 -- Installing: /<>/debian/tmp/usr/man/man1/pVst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcheck.1 -- Installing: /<>/debian/tmp/usr/man/man1/popStats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfroc.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglxgt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcat.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfqual2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaddinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfindex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfallelicprimitives.1 -- Installing: /<>/debian/tmp/usr/man/man1/smoother.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniq.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfintersect.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2alleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfentropy.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfld.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglbound.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2tsv.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfecho.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteSmooth.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnulldotslashdot.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentIhs.1 -- Installing: /<>/debian/tmp/usr/man/man1/dumpContigsFromHeader.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfevenregions.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcombine.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfclassify.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremovesamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffilter.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2haplo.1 -- Installing: /<>/debian/tmp/usr/man/man1/pFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniqalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcreatemulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2fasta.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfparsealts.1 -- Installing: /<>/debian/tmp/usr/man/man1/abba-baba.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/sequenceDiversity.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandomsample.1 make[1]: Leaving directory '/<>/obj-arm-linux-gnueabi' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -name filevercmp.h -delete cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree # install pkg-config file mkdir -p /<>/debian/libvcflib-dev/usr/lib/arm-linux-gnueabi/pkgconfig mv libvcflib.pc /<>/debian/libvcflib-dev/usr/lib/arm-linux-gnueabi/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/arm-linux-gnueabi/libvcflib.so: No such file or directory make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for rscript in debian/libvcflib-tools/usr/lib/vcflib/scripts/*.R ; do \ scriptname=$(basename $rscript) ; \ dh_link -p libvcflib-tools usr/lib/vcflib/scripts/$scriptname usr/lib/R/site-library/vcflib/$scriptname ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/*/usr/lib/vcflib/scripts/*.R make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: symbol __aeabi_atexit@CXXABI_ARM_1.3.3 used by debian/libvcflib1/usr/lib/arm-linux-gnueabi/libvcflib.so.1 found in none of the libraries dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib1/usr/lib/arm-linux-gnueabi/libvcflib.so.1 was not linked against libdisorder.so.0 (it uses none of the library's symbols) dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfintersect contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcflength contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/plotHaps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfqual2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfroc contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfoverlay contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglbound contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfglxgt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfo2qual contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfclassify contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfecho contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandomsample contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2tsv contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfafpath contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepgeno contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcountalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremovesamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremap contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfparsealts contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcleancomplex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaltcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfnumalt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pVst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfbreakmulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/smoother contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteGPAT++ contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhethomratio contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfallelicprimitives contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypecompare contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfinfosummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/bFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/normalize-iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/meltEHH contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfhetcount contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/abba-baba contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfevenregions contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2haplo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfaddinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfflatten contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfremoveaberrantgenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/hapLrt contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/sequenceDiversity contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfrandom contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/pFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfdistance contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfleftalign contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsitesummarize contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2dag contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcreatemulti contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcheck contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfld contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffixup contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/dumpContigsFromHeader contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniq contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsamplediff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfprimers contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcat contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfentropy contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcffilter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/genotypeSummary contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentIhs contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/iHS contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcommonsamples contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/wcFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfstreamsort contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/permuteSmooth contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfkeepinfo contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfuniqalleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfannotategenotypes contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfcombine contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/segmentFst contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgeno2alleles contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/popStats contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfgenosamplenames contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfindex contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcfsample2info contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/libvcflib-tools/usr/lib/vcflib/bin/vcf2fasta contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.3+dfsg-2_armel.deb'. dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb'. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.3+dfsg-2_armel.deb'. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.3+dfsg-2_armel.deb'. dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb'. dpkg-genbuildinfo --build=any -O../libvcflib_1.0.3+dfsg-2_armel.buildinfo dpkg-genchanges --build=any -O../libvcflib_1.0.3+dfsg-2_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-12-04T18:46:51Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libvcflib_1.0.3+dfsg-2_armel.changes: ------------------------------------- Format: 1.8 Date: Fri, 07 Oct 2022 16:26:06 +0200 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 1.0.3+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib1 - C++ library for parsing and manipulating VCF files Changes: libvcflib (1.0.3+dfsg-2) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 1af3ffd23efff777431c95eec526554500662664 84580 libvcflib-dev_1.0.3+dfsg-2_armel.deb b47c8e9ac6ccdc3f4b20d8a9c4a81ba7a017fe5f 16783316 libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb c15f104b0ef411c6cf83db66568be12e0671dbf7 638312 libvcflib-tools_1.0.3+dfsg-2_armel.deb 76af7503b95d972407b2551310d687098f8bd4ea 1452748 libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb dace579db395bfc91506d76b2fa2e22e774e8d34 134832 libvcflib1_1.0.3+dfsg-2_armel.deb 3e6667a16c579bc5848080222c599bfa39484022 7777 libvcflib_1.0.3+dfsg-2_armel.buildinfo Checksums-Sha256: d15844c661b0027d739e9f00007ff02f009e495814e3ee4a054d0020355b653d 84580 libvcflib-dev_1.0.3+dfsg-2_armel.deb f7b901bb44237295fa7e23f48970b9741e9c856b53b0a0c022810ec96c546f30 16783316 libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb 0ee490167fa6af63bcbd523256205295df9b79598a9c5f5ba8a9439695a457d1 638312 libvcflib-tools_1.0.3+dfsg-2_armel.deb 25d27e6ccba8278fdd1fc5642342c545965519cfd0ed5b26b2287e1e30450704 1452748 libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb 93b0627835cbe156ab2a1816e3ad377d728b38d118f35bfc05c58194b86ac810 134832 libvcflib1_1.0.3+dfsg-2_armel.deb e1bfcda8a38a81776e4b2527b236dcfd1a943c9571185c197a1137a61271dc0a 7777 libvcflib_1.0.3+dfsg-2_armel.buildinfo Files: 1398644c4f45757760d57855d3c6475f 84580 libdevel optional libvcflib-dev_1.0.3+dfsg-2_armel.deb c7e2b43541a1bef22b9beca4bdfb7c7a 16783316 debug optional libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb 3e0f124f5f246abb646a3346031861c5 638312 science optional libvcflib-tools_1.0.3+dfsg-2_armel.deb 2ae807edfccd2a38241b39feee03c55b 1452748 debug optional libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb 5b3b101753339eb24c1570721a5b760c 134832 libs optional libvcflib1_1.0.3+dfsg-2_armel.deb e8dfa5b94dd5d00c78574904102f642f 7777 science optional libvcflib_1.0.3+dfsg-2_armel.buildinfo /<>/libvcflib_1.0.3+dfsg-2_armel.changes.new could not be renamed to /<>/libvcflib_1.0.3+dfsg-2_armel.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym Architecture: armel Version: 1.0.3+dfsg-2 Checksums-Md5: 1398644c4f45757760d57855d3c6475f 84580 libvcflib-dev_1.0.3+dfsg-2_armel.deb c7e2b43541a1bef22b9beca4bdfb7c7a 16783316 libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb 3e0f124f5f246abb646a3346031861c5 638312 libvcflib-tools_1.0.3+dfsg-2_armel.deb 2ae807edfccd2a38241b39feee03c55b 1452748 libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb 5b3b101753339eb24c1570721a5b760c 134832 libvcflib1_1.0.3+dfsg-2_armel.deb Checksums-Sha1: 1af3ffd23efff777431c95eec526554500662664 84580 libvcflib-dev_1.0.3+dfsg-2_armel.deb b47c8e9ac6ccdc3f4b20d8a9c4a81ba7a017fe5f 16783316 libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb c15f104b0ef411c6cf83db66568be12e0671dbf7 638312 libvcflib-tools_1.0.3+dfsg-2_armel.deb 76af7503b95d972407b2551310d687098f8bd4ea 1452748 libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb dace579db395bfc91506d76b2fa2e22e774e8d34 134832 libvcflib1_1.0.3+dfsg-2_armel.deb Checksums-Sha256: d15844c661b0027d739e9f00007ff02f009e495814e3ee4a054d0020355b653d 84580 libvcflib-dev_1.0.3+dfsg-2_armel.deb f7b901bb44237295fa7e23f48970b9741e9c856b53b0a0c022810ec96c546f30 16783316 libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb 0ee490167fa6af63bcbd523256205295df9b79598a9c5f5ba8a9439695a457d1 638312 libvcflib-tools_1.0.3+dfsg-2_armel.deb 25d27e6ccba8278fdd1fc5642342c545965519cfd0ed5b26b2287e1e30450704 1452748 libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb 93b0627835cbe156ab2a1816e3ad377d728b38d118f35bfc05c58194b86ac810 134832 libvcflib1_1.0.3+dfsg-2_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Dec 2022 18:46:51 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2-2+b1), binutils (= 2.39-8), binutils-common (= 2.39-8), binutils-x86-64-linux-gnu (= 2.39-8), bsdextrautils (= 2.38.1-4), bsdutils (= 1:2.38.1-4), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), cmake (= 3.25.1-1), cmake-data (= 3.25.1-1), coreutils (= 9.1-1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-8), cpp-12 (= 12.2.0-9), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.80), debhelper (= 13.11.1), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-2), diffutils (= 1:3.8-1), dpkg (= 1.21.11), dpkg-dev (= 1.21.11), dwz (= 0.14+20220924-2), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-9), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-8), gcc-11-base (= 11.3.0-8), gcc-12 (= 12.2.0-9), gcc-12-base (= 12.2.0-9), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-2), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.0-1), libasan6 (= 11.3.0-8), libasan8 (= 12.2.0-9), libatomic1 (= 12.2.0-9), libattr1 (= 1:2.5.1-2), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b2), libbinutils (= 2.39-8), libblkid1 (= 2.38.1-4), libbrotli1 (= 1.0.9-2+b5), libbz2-1.0 (= 1.0.8-5+b1), libbz2-dev (= 1.0.8-5+b1), libc-bin (= 2.36-6), libc-dev-bin (= 2.36-6), libc6 (= 2.36-6), libc6-dev (= 2.36-6), libcap-ng0 (= 0.8.3-1+b2), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-9), libcom-err2 (= 1.46.6~rc1-1+b1), libcrypt-dev (= 1:4.4.33-1), libcrypt1 (= 1:4.4.33-1), libctf-nobfd0 (= 2.39-8), libctf0 (= 2.39-8), libcurl3-gnutls (= 7.86.0-2), libcurl4 (= 7.86.0-2), libcurl4-gnutls-dev (= 7.86.0-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.265), libdebhelper-perl (= 13.11.1), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4+b1), libdisorder0 (= 0.0.2+git20130809.8062ee1-4+b1), libdpkg-perl (= 1.21.11), libelf1 (= 0.188-1), libexpat1 (= 2.5.0-1), libfastahack-dev (= 1.0.0+dfsg-10), libfastahack0 (= 1.0.0+dfsg-10), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.0-2), libgcc-11-dev (= 11.3.0-8), libgcc-12-dev (= 12.2.0-9), libgcc-s1 (= 12.2.0-9), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.8-4), libgomp1 (= 12.2.0-9), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.39-8), libgssapi-krb5-2 (= 1.20.1-1), libhogweed6 (= 3.8.1-2), libhts-dev (= 1.16+ds-3), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-9), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), libldap-2.5-0 (= 2.5.13+dfsg-2+b1), liblsan0 (= 12.2.0-9), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.2.9-0.0), liblzma5 (= 5.2.9-0.0), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.3+20220423-2), libncursesw6 (= 6.3+20220423-2), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.50.0-1+b1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-1), libpam-modules (= 1.5.2-5), libpam-modules-bin (= 1.5.2-5), libpam-runtime (= 1.5.2-5), libpam0g (= 1.5.2-5), libpcre2-8-0 (= 10.40-3), libperl5.36 (= 5.36.0-4), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.0-11), libprocps8 (= 2:3.3.17-7.1), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-9), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-10), libsasl2-modules-db (= 2.1.28+dfsg-10), libseccomp2 (= 2.5.4-1+b2), libselinux1 (= 3.4-1+b3), libsmartcols1 (= 2.38.1-4), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12+b1), libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.7-1), libssw-dev (= 1.1-13), libssw0 (= 1.1-13), libstdc++-12-dev (= 12.2.0-9), libstdc++6 (= 12.2.0-9), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.2-1), libtabixpp-dev (= 1.1.1-1), libtabixpp0 (= 1.1.1-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan0 (= 11.3.0-8), libtsan2 (= 12.2.0-9), libubsan1 (= 12.2.0-9), libuchardet0 (= 0.0.7-1), libudev1 (= 252.2-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.1+b2), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 6.0.10-2), login (= 1:4.13+dfsg1-1), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.11.1-1), markdown (= 1.0.1-12), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.36.0-4), perl-base (= 5.36.0-4), perl-modules-5.36 (= 5.36.0-4), pkg-config (= 1.8.0-11), pkgconf (= 1.8.0-11), pkgconf-bin (= 1.8.0-11), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-7.1), rpcsvc-proto (= 1.4.3-1), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.05-7), tar (= 1.34+dfsg-1.1), usrmerge (= 33), util-linux (= 2.38.1-4), util-linux-extra (= 2.38.1-4), xz-utils (= 5.2.9-0.0), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1665152766" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libvcflib-dev_1.0.3+dfsg-2_armel.deb ------------------------------------ new Debian package, version 2.0. size 84580 bytes: control archive=1664 bytes. 1268 bytes, 27 lines control 1546 bytes, 23 lines md5sums Package: libvcflib-dev Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 550 Depends: libvcflib1 (= 1.0.3+dfsg-2), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (development) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains the static library and the header files. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/intervaltree/ -rw-r--r-- root/root 11829 2022-02-16 17:07 ./usr/include/intervaltree/IntervalTree.h drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/vcflib/ -rw-r--r-- root/root 5828 2022-02-16 17:06 ./usr/include/vcflib/BedReader.h -rw-r--r-- root/root 22863 2022-10-07 14:26 ./usr/include/vcflib/Variant.h -rw-r--r-- root/root 368608 2022-02-16 17:07 ./usr/include/vcflib/catch.hpp -rw-r--r-- root/root 6628 2022-02-16 17:06 ./usr/include/vcflib/cdflib.hpp -rw-r--r-- root/root 697 2022-02-16 17:06 ./usr/include/vcflib/convert.h -rw-r--r-- root/root 1777 2022-02-16 17:07 ./usr/include/vcflib/filevercmp.h -rw-r--r-- root/root 2053 2022-02-16 17:06 ./usr/include/vcflib/gpatInfo.hpp -rw-r--r-- root/root 1238 2022-02-16 17:06 ./usr/include/vcflib/join.h -rw-r--r-- root/root 194 2022-02-16 17:06 ./usr/include/vcflib/makeUnique.h -rw-r--r-- root/root 6580 2022-02-16 17:06 ./usr/include/vcflib/mt19937ar.h -rw-r--r-- root/root 2155 2022-02-16 17:07 ./usr/include/vcflib/multichoose.h -rw-r--r-- root/root 3446 2022-02-16 17:07 ./usr/include/vcflib/multipermute.h -rw-r--r-- root/root 2507 2022-02-16 17:06 ./usr/include/vcflib/pdflib.hpp -rw-r--r-- root/root 1295 2022-02-16 17:06 ./usr/include/vcflib/rnglib.hpp -rw-r--r-- root/root 1825 2022-02-16 17:06 ./usr/include/vcflib/split.h -rw-r--r-- root/root 2311 2022-02-16 17:06 ./usr/include/vcflib/var.hpp -rw-r--r-- root/root 75596 2022-02-16 17:06 ./usr/include/vcflib/vec128int.h -rw-r--r-- root/root 14148 2022-02-16 17:06 ./usr/include/vcflib/veclib_types.h drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/libvcflib.so -> libvcflib.so.1 drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/pkgconfig/ -rw-r--r-- root/root 283 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/pkgconfig/libvcflib.pc drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/ -rw-r--r-- root/root 1652 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz -rw-r--r-- root/root 2044 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/copyright drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2022-10-07 14:26 ./usr/share/lintian/overrides/libvcflib-dev libvcflib-tools-dbgsym_1.0.3+dfsg-2_armel.deb --------------------------------------------- new Debian package, version 2.0. size 16783316 bytes: control archive=4296 bytes. 3770 bytes, 12 lines control 8891 bytes, 84 lines md5sums Package: libvcflib-tools-dbgsym Source: libvcflib Version: 1.0.3+dfsg-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 17748 Depends: libvcflib-tools (= 1.0.3+dfsg-2) Section: debug Priority: optional Description: debug symbols for libvcflib-tools Build-Ids: 0119c7cd7e33c3ea4f0dddb02bb6374178562224 035dcf670649598fe77aa7adcd026ffbcab2a6d1 04a807538ed7a9b270b2a959efb697178d05243c 0bb9aef7b363457445c41021395170639a631c94 0d3ee7c33ccb6caafd9ff8dfad276274bac9654c 0da432138e414f4773d7d267258eb306d9a03686 14907361907a22fd3813f1d7d0e1e0d87ea1fba5 1545543a3bd47e8e1138bcb3cef2b807e88cf76b 1b0a68ed954a309d335f9c49a3eaeb5a44346896 1b20cc754b4ef4e9a4dc9122d128be0597b9149b 1bb88e0f1d5aed1fa10f3b13d3fb710e2003ea43 1f1a68fbaad9fe95e91f71fd142d98bf9a526f43 200c4a43a6568556b9dc6c5ac95ea99aaa331bd5 21f38055dbbbf82688f32111a776ef50c5a17e05 22d60d60a6d2bb63dae1bcf6001058e2486a07a8 24c8e4e60c8301a778730524489deb6fe2e4d9bf 29fc0a08c73569d030e7104ba5eaba9147c0a2d8 2a32beece1a4c32168e790eeae440ece8f69ef07 2a4b15383c45708a6f62e877035df58d69d56b3a 2d2d2e2d876568acbe5c68578715d74fc1f94b03 3262c9cb40fcdc93411e0afa0c75ed182a7d9f84 33990691a80864a1f44e2c4edc9fafa7984b2c6e 3466c4407804712bea587ef99b71f5ba2cfed76a 3541a14e4155477711108e0c3a927018a472f045 361fe038cfff0be7fce9e640ae5e980dc792d50a 39e57eaac49ecacc76fd1a4ced9148dfa4a02b8d 39e6547b05e5867ad1818c153720bd083ad915dd 3b3d33a73c088c757726b8b1cc7be9f23d37f519 3cbcbf31e0d92f82eb81e4c93d6d73b5a8ccda80 416a148ec3a20a0865376d2e7b469d4ed79ae71b 44ac2a4f2a1b1a1e7e07c8abaa3758b0a5954e78 44c9bcd452c543b3f82116005aeb14817c62f9d2 4608d8fb4af454e255f4ac73f04919a33516df7b 48b3322cd254fe2bad75671aadef2e4eb3e5eefe 505cc85f7b5a68f703053fb41df2b0611df55da7 516927f3ae44044ad3e3043548c71c5d0943509d 57428a06bc0e67da04a9181e58bbbef4408b0d77 5784764e6e10d2938b989d64f1a81feb30f28477 5a39434ac5257ed07619c8b639b068f19d46be23 5a3ee0c4d042c90f77eb7a028edaabef9a34e012 5b0e57e21b419acc64343b14228acc07ebf9bd22 5fb5a02de0e869babb766e6a4950a51314c34708 61629009651c92bf5be5bbf4a70199ef446615f5 61f73bba350b0829aff5958b402df5502f800330 6568ae9ad54cb0fc0254eebad3dd52b7daa08d52 67a1c69baedcfb755eae4116fe38aac8266d7085 698e1ff82e077098241023e47b1a4deeeb1ac965 69a92732df7bca5e0130d4fca7b371ea9d678021 69c3d2b71f3c1b418eb856d851921339e019b477 6ce520cc47d4679603b03d76738c1bc8a2033c99 6ecfcfab8ce1a5c8646f6f3d8d1913bba7ed2cbc 6f8666bd1949e781dc8c4ab903c7d2a6b86cf729 71cc1f0b6be81d3edd262c4252d369fe140f1c72 76d73cc72e6286674a6d11d2e24a58a9e449c043 8a5edf15dc3b2721f263ea8523c0518a9d2ee525 903d98b704c5d7939befe2b8ae2d08eee0f6451e 90f19ec5cfbe4b517f614c10e8239f12b85fbfaa 9fdcdd5fcf04ba47fef84486a037304ff920960b a30492bc22a238cab2a7bcac8ee8a8ee2ce7b0e2 a57985440ed7e82b4134c43d14f5681f3a882376 aba8d67fd793f9cbab3cb2ab84071dd1917330c8 ad17349d40638235330f3d798707a9a775c1aa25 b187eae2c4228b5dfb8dad76f3783b4628a9c514 b24396834523cdc4653682a09d73d4611b1095e9 b8a6b979af25b947c000caf89e15a089f36177e8 b977c5e1f770d4fe0b3b4bcf3ac9ceef8f639082 be5efd891fa2103cc5e1d64ebef995c0dd5aa6ec c1b0654d3a173f12148fefbbbd36a3f87413d093 c2a576492ca4338f95504e6e325adc78c85d11c9 c628ba8d132f297133795a48443bf01f73a900f2 c7735ca90dfb458260bf2f0a2b395f9f89ac4da6 ce4df612943cf0faf62c9d3bbc8b055b76a0b223 cf1c03a4019270f2355733378d0c9a001311fd85 d3903afe223aef0f81110d2d929b4d584232c5e6 ddb530b69331f946c68f43b885e9b8c1c0e6aee3 df8186540d520141d3fda3b298441a93c35b23a9 e4a75d13ff57c3d567ccd5fff74316a7f7b3018c eaafff77ae91d1b96ea4b94fe0bf6735165321f6 eb8a018326c34d9bc3472a587fc2fe003f064161 efe0731e8c3a779cf22ebd50eead527a07c68c66 f82c22548a98dbff0ac6388b978de3d8192661a5 f92c9c18eaa78fe0e6e7917dadd687d7c203618d fc3b4f4f17974c90ab94249f9f0ff9c7b7b1b2e3 drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/01/ -rw-r--r-- root/root 52688 2022-10-07 14:26 ./usr/lib/debug/.build-id/01/19c7cd7e33c3ea4f0dddb02bb6374178562224.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/03/ -rw-r--r-- root/root 166648 2022-10-07 14:26 ./usr/lib/debug/.build-id/03/5dcf670649598fe77aa7adcd026ffbcab2a6d1.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/04/ -rw-r--r-- root/root 168360 2022-10-07 14:26 ./usr/lib/debug/.build-id/04/a807538ed7a9b270b2a959efb697178d05243c.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/0b/ -rw-r--r-- root/root 125276 2022-10-07 14:26 ./usr/lib/debug/.build-id/0b/b9aef7b363457445c41021395170639a631c94.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/0d/ -rw-r--r-- root/root 151632 2022-10-07 14:26 ./usr/lib/debug/.build-id/0d/3ee7c33ccb6caafd9ff8dfad276274bac9654c.debug -rw-r--r-- root/root 48296 2022-10-07 14:26 ./usr/lib/debug/.build-id/0d/a432138e414f4773d7d267258eb306d9a03686.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/14/ -rw-r--r-- root/root 290068 2022-10-07 14:26 ./usr/lib/debug/.build-id/14/907361907a22fd3813f1d7d0e1e0d87ea1fba5.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/15/ -rw-r--r-- root/root 125356 2022-10-07 14:26 ./usr/lib/debug/.build-id/15/45543a3bd47e8e1138bcb3cef2b807e88cf76b.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/1b/ -rw-r--r-- root/root 382440 2022-10-07 14:26 ./usr/lib/debug/.build-id/1b/0a68ed954a309d335f9c49a3eaeb5a44346896.debug -rw-r--r-- root/root 571968 2022-10-07 14:26 ./usr/lib/debug/.build-id/1b/20cc754b4ef4e9a4dc9122d128be0597b9149b.debug -rw-r--r-- root/root 423996 2022-10-07 14:26 ./usr/lib/debug/.build-id/1b/b88e0f1d5aed1fa10f3b13d3fb710e2003ea43.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/1f/ -rw-r--r-- root/root 86832 2022-10-07 14:26 ./usr/lib/debug/.build-id/1f/1a68fbaad9fe95e91f71fd142d98bf9a526f43.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/20/ -rw-r--r-- root/root 271324 2022-10-07 14:26 ./usr/lib/debug/.build-id/20/0c4a43a6568556b9dc6c5ac95ea99aaa331bd5.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/21/ -rw-r--r-- root/root 197008 2022-10-07 14:26 ./usr/lib/debug/.build-id/21/f38055dbbbf82688f32111a776ef50c5a17e05.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/22/ -rw-r--r-- root/root 126488 2022-10-07 14:26 ./usr/lib/debug/.build-id/22/d60d60a6d2bb63dae1bcf6001058e2486a07a8.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/24/ -rw-r--r-- root/root 148472 2022-10-07 14:26 ./usr/lib/debug/.build-id/24/c8e4e60c8301a778730524489deb6fe2e4d9bf.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 187260 2022-10-07 14:26 ./usr/lib/debug/.build-id/29/fc0a08c73569d030e7104ba5eaba9147c0a2d8.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/2a/ -rw-r--r-- root/root 140556 2022-10-07 14:26 ./usr/lib/debug/.build-id/2a/32beece1a4c32168e790eeae440ece8f69ef07.debug -rw-r--r-- root/root 110204 2022-10-07 14:26 ./usr/lib/debug/.build-id/2a/4b15383c45708a6f62e877035df58d69d56b3a.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/2d/ -rw-r--r-- root/root 129868 2022-10-07 14:26 ./usr/lib/debug/.build-id/2d/2d2e2d876568acbe5c68578715d74fc1f94b03.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/32/ -rw-r--r-- root/root 597968 2022-10-07 14:26 ./usr/lib/debug/.build-id/32/62c9cb40fcdc93411e0afa0c75ed182a7d9f84.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/33/ -rw-r--r-- root/root 188960 2022-10-07 14:26 ./usr/lib/debug/.build-id/33/990691a80864a1f44e2c4edc9fafa7984b2c6e.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/34/ -rw-r--r-- root/root 114592 2022-10-07 14:26 ./usr/lib/debug/.build-id/34/66c4407804712bea587ef99b71f5ba2cfed76a.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/35/ -rw-r--r-- root/root 111308 2022-10-07 14:26 ./usr/lib/debug/.build-id/35/41a14e4155477711108e0c3a927018a472f045.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/36/ -rw-r--r-- root/root 312268 2022-10-07 14:26 ./usr/lib/debug/.build-id/36/1fe038cfff0be7fce9e640ae5e980dc792d50a.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/39/ -rw-r--r-- root/root 248808 2022-10-07 14:26 ./usr/lib/debug/.build-id/39/e57eaac49ecacc76fd1a4ced9148dfa4a02b8d.debug -rw-r--r-- root/root 181716 2022-10-07 14:26 ./usr/lib/debug/.build-id/39/e6547b05e5867ad1818c153720bd083ad915dd.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 150380 2022-10-07 14:26 ./usr/lib/debug/.build-id/3b/3d33a73c088c757726b8b1cc7be9f23d37f519.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/3c/ -rw-r--r-- root/root 137396 2022-10-07 14:26 ./usr/lib/debug/.build-id/3c/bcbf31e0d92f82eb81e4c93d6d73b5a8ccda80.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/41/ -rw-r--r-- root/root 261668 2022-10-07 14:26 ./usr/lib/debug/.build-id/41/6a148ec3a20a0865376d2e7b469d4ed79ae71b.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/44/ -rw-r--r-- root/root 373336 2022-10-07 14:26 ./usr/lib/debug/.build-id/44/ac2a4f2a1b1a1e7e07c8abaa3758b0a5954e78.debug -rw-r--r-- root/root 314404 2022-10-07 14:26 ./usr/lib/debug/.build-id/44/c9bcd452c543b3f82116005aeb14817c62f9d2.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/46/ -rw-r--r-- root/root 189684 2022-10-07 14:26 ./usr/lib/debug/.build-id/46/08d8fb4af454e255f4ac73f04919a33516df7b.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/48/ -rw-r--r-- root/root 323780 2022-10-07 14:26 ./usr/lib/debug/.build-id/48/b3322cd254fe2bad75671aadef2e4eb3e5eefe.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/50/ -rw-r--r-- root/root 98744 2022-10-07 14:26 ./usr/lib/debug/.build-id/50/5cc85f7b5a68f703053fb41df2b0611df55da7.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/51/ -rw-r--r-- root/root 320448 2022-10-07 14:26 ./usr/lib/debug/.build-id/51/6927f3ae44044ad3e3043548c71c5d0943509d.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/57/ -rw-r--r-- root/root 295176 2022-10-07 14:26 ./usr/lib/debug/.build-id/57/428a06bc0e67da04a9181e58bbbef4408b0d77.debug -rw-r--r-- root/root 48660 2022-10-07 14:26 ./usr/lib/debug/.build-id/57/84764e6e10d2938b989d64f1a81feb30f28477.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/5a/ -rw-r--r-- root/root 114100 2022-10-07 14:26 ./usr/lib/debug/.build-id/5a/39434ac5257ed07619c8b639b068f19d46be23.debug -rw-r--r-- root/root 111248 2022-10-07 14:26 ./usr/lib/debug/.build-id/5a/3ee0c4d042c90f77eb7a028edaabef9a34e012.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/5b/ -rw-r--r-- root/root 208880 2022-10-07 14:26 ./usr/lib/debug/.build-id/5b/0e57e21b419acc64343b14228acc07ebf9bd22.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/5f/ -rw-r--r-- root/root 146380 2022-10-07 14:26 ./usr/lib/debug/.build-id/5f/b5a02de0e869babb766e6a4950a51314c34708.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/61/ -rw-r--r-- root/root 105952 2022-10-07 14:26 ./usr/lib/debug/.build-id/61/629009651c92bf5be5bbf4a70199ef446615f5.debug -rw-r--r-- root/root 70148 2022-10-07 14:26 ./usr/lib/debug/.build-id/61/f73bba350b0829aff5958b402df5502f800330.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/65/ -rw-r--r-- root/root 124088 2022-10-07 14:26 ./usr/lib/debug/.build-id/65/68ae9ad54cb0fc0254eebad3dd52b7daa08d52.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/67/ -rw-r--r-- root/root 159696 2022-10-07 14:26 ./usr/lib/debug/.build-id/67/a1c69baedcfb755eae4116fe38aac8266d7085.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/69/ -rw-r--r-- root/root 136104 2022-10-07 14:26 ./usr/lib/debug/.build-id/69/8e1ff82e077098241023e47b1a4deeeb1ac965.debug -rw-r--r-- root/root 188016 2022-10-07 14:26 ./usr/lib/debug/.build-id/69/a92732df7bca5e0130d4fca7b371ea9d678021.debug -rw-r--r-- root/root 274396 2022-10-07 14:26 ./usr/lib/debug/.build-id/69/c3d2b71f3c1b418eb856d851921339e019b477.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/6c/ -rw-r--r-- root/root 86592 2022-10-07 14:26 ./usr/lib/debug/.build-id/6c/e520cc47d4679603b03d76738c1bc8a2033c99.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 165348 2022-10-07 14:26 ./usr/lib/debug/.build-id/6e/cfcfab8ce1a5c8646f6f3d8d1913bba7ed2cbc.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/6f/ -rw-r--r-- root/root 163452 2022-10-07 14:26 ./usr/lib/debug/.build-id/6f/8666bd1949e781dc8c4ab903c7d2a6b86cf729.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/71/ -rw-r--r-- root/root 178908 2022-10-07 14:26 ./usr/lib/debug/.build-id/71/cc1f0b6be81d3edd262c4252d369fe140f1c72.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/76/ -rw-r--r-- root/root 244232 2022-10-07 14:26 ./usr/lib/debug/.build-id/76/d73cc72e6286674a6d11d2e24a58a9e449c043.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 193452 2022-10-07 14:26 ./usr/lib/debug/.build-id/8a/5edf15dc3b2721f263ea8523c0518a9d2ee525.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/90/ -rw-r--r-- root/root 305480 2022-10-07 14:26 ./usr/lib/debug/.build-id/90/3d98b704c5d7939befe2b8ae2d08eee0f6451e.debug -rw-r--r-- root/root 150184 2022-10-07 14:26 ./usr/lib/debug/.build-id/90/f19ec5cfbe4b517f614c10e8239f12b85fbfaa.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/9f/ -rw-r--r-- root/root 46164 2022-10-07 14:26 ./usr/lib/debug/.build-id/9f/dcdd5fcf04ba47fef84486a037304ff920960b.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/a3/ -rw-r--r-- root/root 168848 2022-10-07 14:26 ./usr/lib/debug/.build-id/a3/0492bc22a238cab2a7bcac8ee8a8ee2ce7b0e2.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/a5/ -rw-r--r-- root/root 259100 2022-10-07 14:26 ./usr/lib/debug/.build-id/a5/7985440ed7e82b4134c43d14f5681f3a882376.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ab/ -rw-r--r-- root/root 234236 2022-10-07 14:26 ./usr/lib/debug/.build-id/ab/a8d67fd793f9cbab3cb2ab84071dd1917330c8.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ad/ -rw-r--r-- root/root 452396 2022-10-07 14:26 ./usr/lib/debug/.build-id/ad/17349d40638235330f3d798707a9a775c1aa25.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/b1/ -rw-r--r-- root/root 341268 2022-10-07 14:26 ./usr/lib/debug/.build-id/b1/87eae2c4228b5dfb8dad76f3783b4628a9c514.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/b2/ -rw-r--r-- root/root 134504 2022-10-07 14:26 ./usr/lib/debug/.build-id/b2/4396834523cdc4653682a09d73d4611b1095e9.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/b8/ -rw-r--r-- root/root 250484 2022-10-07 14:26 ./usr/lib/debug/.build-id/b8/a6b979af25b947c000caf89e15a089f36177e8.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/b9/ -rw-r--r-- root/root 528684 2022-10-07 14:26 ./usr/lib/debug/.build-id/b9/77c5e1f770d4fe0b3b4bcf3ac9ceef8f639082.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/be/ -rw-r--r-- root/root 99492 2022-10-07 14:26 ./usr/lib/debug/.build-id/be/5efd891fa2103cc5e1d64ebef995c0dd5aa6ec.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/c1/ -rw-r--r-- root/root 161684 2022-10-07 14:26 ./usr/lib/debug/.build-id/c1/b0654d3a173f12148fefbbbd36a3f87413d093.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/c2/ -rw-r--r-- root/root 273560 2022-10-07 14:26 ./usr/lib/debug/.build-id/c2/a576492ca4338f95504e6e325adc78c85d11c9.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 249644 2022-10-07 14:26 ./usr/lib/debug/.build-id/c6/28ba8d132f297133795a48443bf01f73a900f2.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/c7/ -rw-r--r-- root/root 255072 2022-10-07 14:26 ./usr/lib/debug/.build-id/c7/735ca90dfb458260bf2f0a2b395f9f89ac4da6.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ce/ -rw-r--r-- root/root 150620 2022-10-07 14:26 ./usr/lib/debug/.build-id/ce/4df612943cf0faf62c9d3bbc8b055b76a0b223.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/cf/ -rw-r--r-- root/root 151668 2022-10-07 14:26 ./usr/lib/debug/.build-id/cf/1c03a4019270f2355733378d0c9a001311fd85.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/d3/ -rw-r--r-- root/root 514716 2022-10-07 14:26 ./usr/lib/debug/.build-id/d3/903afe223aef0f81110d2d929b4d584232c5e6.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/dd/ -rw-r--r-- root/root 439112 2022-10-07 14:26 ./usr/lib/debug/.build-id/dd/b530b69331f946c68f43b885e9b8c1c0e6aee3.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/df/ -rw-r--r-- root/root 290928 2022-10-07 14:26 ./usr/lib/debug/.build-id/df/8186540d520141d3fda3b298441a93c35b23a9.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/e4/ -rw-r--r-- root/root 110496 2022-10-07 14:26 ./usr/lib/debug/.build-id/e4/a75d13ff57c3d567ccd5fff74316a7f7b3018c.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ea/ -rw-r--r-- root/root 113796 2022-10-07 14:26 ./usr/lib/debug/.build-id/ea/afff77ae91d1b96ea4b94fe0bf6735165321f6.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 133280 2022-10-07 14:26 ./usr/lib/debug/.build-id/eb/8a018326c34d9bc3472a587fc2fe003f064161.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ef/ -rw-r--r-- root/root 125040 2022-10-07 14:26 ./usr/lib/debug/.build-id/ef/e0731e8c3a779cf22ebd50eead527a07c68c66.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/f8/ -rw-r--r-- root/root 110624 2022-10-07 14:26 ./usr/lib/debug/.build-id/f8/2c22548a98dbff0ac6388b978de3d8192661a5.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/f9/ -rw-r--r-- root/root 164352 2022-10-07 14:26 ./usr/lib/debug/.build-id/f9/2c9c18eaa78fe0e6e7917dadd687d7c203618d.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/fc/ -rw-r--r-- root/root 48056 2022-10-07 14:26 ./usr/lib/debug/.build-id/fc/3b4f4f17974c90ab94249f9f0ff9c7b7b1b2e3.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 940172 2022-10-07 14:26 ./usr/lib/debug/.dwz/arm-linux-gnueabi/libvcflib-tools.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib-tools-dbgsym -> libvcflib-tools libvcflib-tools_1.0.3+dfsg-2_armel.deb -------------------------------------- new Debian package, version 2.0. size 638312 bytes: control archive=6644 bytes. 1518 bytes, 29 lines control 17697 bytes, 258 lines md5sums Package: libvcflib-tools Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 6602 Depends: libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.3+dfsg), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase Suggests: r-cran-pracma Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3) Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3) Section: science Priority: optional Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (tools) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains several tools using the library. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/bin/ -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/bin/vcf2tsv -rwxr-xr-x root/root 132808 2022-10-07 14:26 ./usr/bin/vcfallelicprimitives -rwxr-xr-x root/root 67368 2022-10-07 14:26 ./usr/bin/vcffilter -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/bin/vcffixup -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/bin/vcfkeepinfo -rwxr-xr-x root/root 404 2022-10-07 14:26 ./usr/bin/vcflib lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/bin/vcfuniqalleles drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/R/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotBfst.R -> ../../../vcflib/scripts/plotBfst.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotHapLrt.R -> ../../../vcflib/scripts/plotHapLrt.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotHaplotypes.R -> ../../../vcflib/scripts/plotHaplotypes.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotPfst.R -> ../../../vcflib/scripts/plotPfst.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotSmoothed.R -> ../../../vcflib/scripts/plotSmoothed.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotWCfst.R -> ../../../vcflib/scripts/plotWCfst.R lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/R/site-library/vcflib/plotXPEHH.R -> ../../../vcflib/scripts/plotXPEHH.R drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/vcflib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/vcflib/bin/ -rwxr-xr-x root/root 67304 2022-10-07 14:26 ./usr/lib/vcflib/bin/abba-baba -rwxr-xr-x root/root 67272 2022-10-07 14:26 ./usr/lib/vcflib/bin/bFst -rwxr-xr-x root/root 423 2022-10-07 14:26 ./usr/lib/vcflib/bin/bed2region -rwxr-xr-x root/root 289 2022-10-07 14:26 ./usr/lib/vcflib/bin/bgziptabix -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/dumpContigsFromHeader -rwxr-xr-x root/root 67304 2022-10-07 14:26 ./usr/lib/vcflib/bin/genotypeSummary -rwxr-xr-x root/root 67288 2022-10-07 14:26 ./usr/lib/vcflib/bin/hapLrt -rwxr-xr-x root/root 67320 2022-10-07 14:26 ./usr/lib/vcflib/bin/iHS -rwxr-xr-x root/root 67336 2022-10-07 14:26 ./usr/lib/vcflib/bin/meltEHH -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/normalize-iHS -rwxr-xr-x root/root 67320 2022-10-07 14:26 ./usr/lib/vcflib/bin/pFst -rwxr-xr-x root/root 67324 2022-10-07 14:26 ./usr/lib/vcflib/bin/pVst -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/permuteGPAT++ -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/permuteSmooth -rwxr-xr-x root/root 67272 2022-10-07 14:26 ./usr/lib/vcflib/bin/plotHaps -rwxr-xr-x root/root 67272 2022-10-07 14:26 ./usr/lib/vcflib/bin/popStats -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/segmentFst -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/segmentIhs -rwxr-xr-x root/root 67336 2022-10-07 14:26 ./usr/lib/vcflib/bin/sequenceDiversity -rwxr-xr-x root/root 67288 2022-10-07 14:26 ./usr/lib/vcflib/bin/smoother -rwxr-xr-x root/root 466 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf2bed.py -rwxr-xr-x root/root 67208 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf2dag -rwxr-xr-x root/root 67256 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf2fasta -rwxr-xr-x root/root 3677 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf2sqlite.py -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf2tsv -rwxr-xr-x root/root 276 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcf_strip_extra_headers -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfaddinfo -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfafpath -rwxr-xr-x root/root 132808 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfallelicprimitives -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfaltcount -rwxr-xr-x root/root 132776 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfannotate -rwxr-xr-x root/root 132696 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfannotategenotypes -rwxr-xr-x root/root 409 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfbiallelic -rwxr-xr-x root/root 67192 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfbreakmulti -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcat -rwxr-xr-x root/root 67256 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcheck -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfclassify -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcleancomplex -rwxr-xr-x root/root 243 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfclearid -rwxr-xr-x root/root 245 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfclearinfo -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcombine -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcommonsamples -rwxr-xr-x root/root 551 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcomplex -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcountalleles -rwxr-xr-x root/root 67192 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfcreatemulti -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfdistance -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfecho -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfentropy -rwxr-xr-x root/root 67288 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfevenregions -rwxr-xr-x root/root 67368 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcffilter -rwxr-xr-x root/root 336 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcffirstheader -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcffixup -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfflatten -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgeno2alleles -rwxr-xr-x root/root 132792 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgeno2haplo -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgenosamplenames -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgenosummarize -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgenotypecompare -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfgenotypes -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfglbound -rwxr-xr-x root/root 67208 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfglxgt -rwxr-xr-x root/root 414 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfgtcompare.sh -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfhetcount -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfhethomratio -rwxr-xr-x root/root 1785 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfindelproximity -rwxr-xr-x root/root 514 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfindels -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfindex -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfinfo2qual -rwxr-xr-x root/root 67304 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfinfosummarize -rwxr-xr-x root/root 132984 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfintersect -rwxr-xr-x root/root 1209 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfjoincalls -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfkeepgeno -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfkeepinfo -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfkeepsamples -rwxr-xr-x root/root 67336 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfld -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfleftalign -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcflength -rwxr-xr-x root/root 415 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfmultiallelic -rwxr-xr-x root/root 467 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfmultiway -rwxr-xr-x root/root 805 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfmultiwayscripts -rwxr-xr-x root/root 645 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfnobiallelicsnps -rwxr-xr-x root/root 440 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfnoindels -rwxr-xr-x root/root 530 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfnosnps -rwxr-xr-x root/root 742 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfnulldotslashdot -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfnumalt -rwxr-xr-x root/root 67208 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfoverlay -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfparsealts -rwxr-xr-x root/root 22090 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.r -rwxr-xr-x root/root 209 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfplotaltdiscrepancy.sh -rwxr-xr-x root/root 3970 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfplotsitediscrepancy.r -rwxr-xr-x root/root 180 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfplottstv.sh -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfprimers -rwxr-xr-x root/root 1881 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.r -rwxr-xr-x root/root 528 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfprintaltdiscrepancy.sh -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfqual2info -rwxr-xr-x root/root 701 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfqualfilter -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfrandom -rwxr-xr-x root/root 67260 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfrandomsample -rwxr-xr-x root/root 912 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfregionreduce -rwxr-xr-x root/root 1015 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfregionreduce_and_cut -rwxr-xr-x root/root 818 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfregionreduce_pipe -rwxr-xr-x root/root 860 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfregionreduce_uncompressed -rwxr-xr-x root/root 67352 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfremap -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfremoveaberrantgenotypes -rwxr-xr-x root/root 593 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfremovenonATGC -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfremovesamples -rwxr-xr-x root/root 132792 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfroc -rwxr-xr-x root/root 67288 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfsample2info -rwxr-xr-x root/root 67208 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfsamplediff -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfsamplenames -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfsitesummarize -rwxr-xr-x root/root 531 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfsnps -rwxr-xr-x root/root 113 2022-02-16 17:06 ./usr/lib/vcflib/bin/vcfsort -rwxr-xr-x root/root 67320 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfstats -rwxr-xr-x root/root 67224 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfstreamsort -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfuniq -rwxr-xr-x root/root 67160 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfuniqalleles -rwxr-xr-x root/root 5486 2022-10-07 14:26 ./usr/lib/vcflib/bin/vcfvarstats -rwxr-xr-x root/root 67304 2022-10-07 14:26 ./usr/lib/vcflib/bin/wcFst drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/vcflib/scripts/ -rwxr-xr-x root/root 423 2022-10-07 14:26 ./usr/lib/vcflib/scripts/bed2region -rwxr-xr-x root/root 289 2022-10-07 14:26 ./usr/lib/vcflib/scripts/bgziptabix -rw-r--r-- root/root 547 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotBfst.R -rw-r--r-- root/root 592 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotHapLrt.R -rw-r--r-- root/root 664 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotHaplotypes.R -rw-r--r-- root/root 526 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotPfst.R -rw-r--r-- root/root 1358 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotSmoothed.R -rw-r--r-- root/root 499 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotWCfst.R -rw-r--r-- root/root 490 2022-02-16 17:06 ./usr/lib/vcflib/scripts/plotXPEHH.R -rwxr-xr-x root/root 6014 2022-10-07 14:26 ./usr/lib/vcflib/scripts/plot_roc.r -rwxr-xr-x root/root 466 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcf2bed.py -rwxr-xr-x root/root 3677 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcf2sqlite.py -rwxr-xr-x root/root 276 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcf_strip_extra_headers -rwxr-xr-x root/root 409 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfbiallelic -rwxr-xr-x root/root 243 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfclearid -rwxr-xr-x root/root 245 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfclearinfo -rwxr-xr-x root/root 551 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfcomplex -rwxr-xr-x root/root 336 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcffirstheader -rwxr-xr-x root/root 414 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfgtcompare.sh -rwxr-xr-x root/root 1785 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfindelproximity -rwxr-xr-x root/root 514 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfindels -rwxr-xr-x root/root 1209 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfjoincalls -rwxr-xr-x root/root 415 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfmultiallelic -rwxr-xr-x root/root 467 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfmultiway -rwxr-xr-x root/root 805 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfmultiwayscripts -rwxr-xr-x root/root 645 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfnobiallelicsnps -rwxr-xr-x root/root 440 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfnoindels -rwxr-xr-x root/root 530 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfnosnps -rwxr-xr-x root/root 742 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfnulldotslashdot -rwxr-xr-x root/root 22090 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.r -rwxr-xr-x root/root 209 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfplotaltdiscrepancy.sh -rwxr-xr-x root/root 3970 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfplotsitediscrepancy.r -rwxr-xr-x root/root 180 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfplottstv.sh -rwxr-xr-x root/root 1881 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.r -rwxr-xr-x root/root 528 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfprintaltdiscrepancy.sh -rwxr-xr-x root/root 701 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfqualfilter -rwxr-xr-x root/root 912 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfregionreduce -rwxr-xr-x root/root 1015 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfregionreduce_and_cut -rwxr-xr-x root/root 818 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfregionreduce_pipe -rwxr-xr-x root/root 860 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfregionreduce_uncompressed -rwxr-xr-x root/root 593 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfremovenonATGC -rwxr-xr-x root/root 531 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfsnps -rwxr-xr-x root/root 113 2022-02-16 17:06 ./usr/lib/vcflib/scripts/vcfsort -rwxr-xr-x root/root 5486 2022-10-07 14:26 ./usr/lib/vcflib/scripts/vcfvarstats drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib-tools/ -rw-r--r-- root/root 1650 2022-10-07 14:26 ./usr/share/doc/libvcflib-tools/changelog.Debian.gz -rw-r--r-- root/root 2044 2022-10-07 14:26 ./usr/share/doc/libvcflib-tools/copyright drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 93 2022-10-07 14:26 ./usr/share/lintian/overrides/libvcflib-tools drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/man/man1/ -rw-r--r-- root/root 760 2022-10-07 14:26 ./usr/share/man/man1/abba-baba.1.gz -rw-r--r-- root/root 1055 2022-10-07 14:26 ./usr/share/man/man1/bFst.1.gz -rw-r--r-- root/root 474 2022-10-07 14:26 ./usr/share/man/man1/dumpContigsFromHeader.1.gz -rw-r--r-- root/root 691 2022-10-07 14:26 ./usr/share/man/man1/genotypeSummary.1.gz -rw-r--r-- root/root 811 2022-10-07 14:26 ./usr/share/man/man1/hapLrt.1.gz -rw-r--r-- root/root 1479 2022-10-07 14:26 ./usr/share/man/man1/iHS.1.gz -rw-r--r-- root/root 906 2022-10-07 14:26 ./usr/share/man/man1/meltEHH.1.gz -rw-r--r-- root/root 643 2022-10-07 14:26 ./usr/share/man/man1/normalize-iHS.1.gz -rw-r--r-- root/root 1103 2022-10-07 14:26 ./usr/share/man/man1/pFst.1.gz -rw-r--r-- root/root 850 2022-10-07 14:26 ./usr/share/man/man1/pVst.1.gz -rw-r--r-- root/root 602 2022-10-07 14:26 ./usr/share/man/man1/permuteGPAT++.1.gz -rw-r--r-- root/root 633 2022-10-07 14:26 ./usr/share/man/man1/permuteSmooth.1.gz -rw-r--r-- root/root 640 2022-10-07 14:26 ./usr/share/man/man1/plotHaps.1.gz -rw-r--r-- root/root 883 2022-10-07 14:26 ./usr/share/man/man1/popStats.1.gz -rw-r--r-- root/root 663 2022-10-07 14:26 ./usr/share/man/man1/segmentFst.1.gz -rw-r--r-- root/root 580 2022-10-07 14:26 ./usr/share/man/man1/segmentIhs.1.gz -rw-r--r-- root/root 880 2022-10-07 14:26 ./usr/share/man/man1/sequenceDiversity.1.gz -rw-r--r-- root/root 839 2022-10-07 14:26 ./usr/share/man/man1/smoother.1.gz -rw-r--r-- root/root 539 2022-10-07 14:26 ./usr/share/man/man1/vcf2dag.1.gz -rw-r--r-- root/root 609 2022-10-07 14:26 ./usr/share/man/man1/vcf2fasta.1.gz -rw-r--r-- root/root 528 2022-10-07 14:26 ./usr/share/man/man1/vcf2tsv.1.gz -rw-r--r-- root/root 382 2022-10-07 14:26 ./usr/share/man/man1/vcfaddinfo.1.gz -rw-r--r-- root/root 419 2022-10-07 14:26 ./usr/share/man/man1/vcfafpath.1.gz -rw-r--r-- root/root 860 2022-10-07 14:26 ./usr/share/man/man1/vcfallelicprimitives.1.gz -rw-r--r-- root/root 372 2022-10-07 14:26 ./usr/share/man/man1/vcfaltcount.1.gz -rw-r--r-- root/root 550 2022-10-07 14:26 ./usr/share/man/man1/vcfannotate.1.gz -rw-r--r-- root/root 510 2022-10-07 14:26 ./usr/share/man/man1/vcfannotategenotypes.1.gz -rw-r--r-- root/root 424 2022-10-07 14:26 ./usr/share/man/man1/vcfbreakmulti.1.gz -rw-r--r-- root/root 359 2022-10-07 14:26 ./usr/share/man/man1/vcfcat.1.gz -rw-r--r-- root/root 556 2022-10-07 14:26 ./usr/share/man/man1/vcfcheck.1.gz -rw-r--r-- root/root 394 2022-10-07 14:26 ./usr/share/man/man1/vcfclassify.1.gz -rw-r--r-- root/root 495 2022-10-07 14:26 ./usr/share/man/man1/vcfcleancomplex.1.gz -rw-r--r-- root/root 618 2022-10-07 14:26 ./usr/share/man/man1/vcfcombine.1.gz -rw-r--r-- root/root 392 2022-10-07 14:26 ./usr/share/man/man1/vcfcommonsamples.1.gz -rw-r--r-- root/root 382 2022-10-07 14:26 ./usr/share/man/man1/vcfcountalleles.1.gz -rw-r--r-- root/root 426 2022-10-07 14:26 ./usr/share/man/man1/vcfcreatemulti.1.gz -rw-r--r-- root/root 441 2022-10-07 14:26 ./usr/share/man/man1/vcfdistance.1.gz -rw-r--r-- root/root 350 2022-10-07 14:26 ./usr/share/man/man1/vcfecho.1.gz -rw-r--r-- root/root 574 2022-10-07 14:26 ./usr/share/man/man1/vcfentropy.1.gz -rw-r--r-- root/root 753 2022-10-07 14:26 ./usr/share/man/man1/vcfevenregions.1.gz -rw-r--r-- root/root 1121 2022-10-07 14:26 ./usr/share/man/man1/vcffilter.1.gz -rw-r--r-- root/root 642 2022-10-07 14:26 ./usr/share/man/man1/vcffixup.1.gz -rw-r--r-- root/root 569 2022-10-07 14:26 ./usr/share/man/man1/vcfflatten.1.gz -rw-r--r-- root/root 396 2022-10-07 14:26 ./usr/share/man/man1/vcfgeno2alleles.1.gz -rw-r--r-- root/root 629 2022-10-07 14:26 ./usr/share/man/man1/vcfgeno2haplo.1.gz -rw-r--r-- root/root 381 2022-10-07 14:26 ./usr/share/man/man1/vcfgenosamplenames.1.gz -rw-r--r-- root/root 475 2022-10-07 14:26 ./usr/share/man/man1/vcfgenosummarize.1.gz -rw-r--r-- root/root 465 2022-10-07 14:26 ./usr/share/man/man1/vcfgenotypecompare.1.gz -rw-r--r-- root/root 660 2022-10-07 14:26 ./usr/share/man/man1/vcfgenotypes.1.gz -rw-r--r-- root/root 483 2022-10-07 14:26 ./usr/share/man/man1/vcfglbound.1.gz -rw-r--r-- root/root 425 2022-10-07 14:26 ./usr/share/man/man1/vcfglxgt.1.gz -rw-r--r-- root/root 430 2022-10-07 14:26 ./usr/share/man/man1/vcfhetcount.1.gz -rw-r--r-- root/root 368 2022-10-07 14:26 ./usr/share/man/man1/vcfhethomratio.1.gz -rw-r--r-- root/root 368 2022-10-07 14:26 ./usr/share/man/man1/vcfindex.1.gz -rw-r--r-- root/root 440 2022-10-07 14:26 ./usr/share/man/man1/vcfinfo2qual.1.gz -rw-r--r-- root/root 568 2022-10-07 14:26 ./usr/share/man/man1/vcfinfosummarize.1.gz -rw-r--r-- root/root 1074 2022-10-07 14:26 ./usr/share/man/man1/vcfintersect.1.gz -rw-r--r-- root/root 429 2022-10-07 14:26 ./usr/share/man/man1/vcfkeepgeno.1.gz -rw-r--r-- root/root 397 2022-10-07 14:26 ./usr/share/man/man1/vcfkeepinfo.1.gz -rw-r--r-- root/root 380 2022-10-07 14:26 ./usr/share/man/man1/vcfkeepsamples.1.gz -rw-r--r-- root/root 692 2022-10-07 14:26 ./usr/share/man/man1/vcfld.1.gz -rw-r--r-- root/root 793 2022-10-07 14:26 ./usr/share/man/man1/vcfleftalign.1.gz -rw-r--r-- root/root 900 2022-10-07 14:26 ./usr/share/man/man1/vcflength.1.gz -rw-r--r-- root/root 883 2022-10-07 14:26 ./usr/share/man/man1/vcflib.1.gz -rw-r--r-- root/root 878 2022-10-07 14:26 ./usr/share/man/man1/vcfnulldotslashdot.1.gz -rw-r--r-- root/root 359 2022-10-07 14:26 ./usr/share/man/man1/vcfnumalt.1.gz -rw-r--r-- root/root 422 2022-10-07 14:26 ./usr/share/man/man1/vcfoverlay.1.gz -rw-r--r-- root/root 1083 2022-10-07 14:26 ./usr/share/man/man1/vcfparsealts.1.gz -rw-r--r-- root/root 744 2022-10-07 14:26 ./usr/share/man/man1/vcfprimers.1.gz -rw-r--r-- root/root 377 2022-10-07 14:26 ./usr/share/man/man1/vcfqual2info.1.gz -rw-r--r-- root/root 887 2022-10-07 14:26 ./usr/share/man/man1/vcfrandom.1.gz -rw-r--r-- root/root 600 2022-10-07 14:26 ./usr/share/man/man1/vcfrandomsample.1.gz -rw-r--r-- root/root 805 2022-10-07 14:26 ./usr/share/man/man1/vcfremap.1.gz -rw-r--r-- root/root 457 2022-10-07 14:26 ./usr/share/man/man1/vcfremoveaberrantgenotypes.1.gz -rw-r--r-- root/root 379 2022-10-07 14:26 ./usr/share/man/man1/vcfremovesamples.1.gz -rw-r--r-- root/root 585 2022-10-07 14:26 ./usr/share/man/man1/vcfroc.1.gz -rw-r--r-- root/root 545 2022-10-07 14:26 ./usr/share/man/man1/vcfsample2info.1.gz -rw-r--r-- root/root 589 2022-10-07 14:26 ./usr/share/man/man1/vcfsamplediff.1.gz -rw-r--r-- root/root 349 2022-10-07 14:26 ./usr/share/man/man1/vcfsamplenames.1.gz -rw-r--r-- root/root 622 2022-10-07 14:26 ./usr/share/man/man1/vcfsitesummarize.1.gz -rw-r--r-- root/root 708 2022-10-07 14:26 ./usr/share/man/man1/vcfstats.1.gz -rw-r--r-- root/root 558 2022-10-07 14:26 ./usr/share/man/man1/vcfstreamsort.1.gz -rw-r--r-- root/root 410 2022-10-07 14:26 ./usr/share/man/man1/vcfuniq.1.gz -rw-r--r-- root/root 416 2022-10-07 14:26 ./usr/share/man/man1/vcfuniqalleles.1.gz -rw-r--r-- root/root 879 2022-10-07 14:26 ./usr/share/man/man1/wcFst.1.gz libvcflib1-dbgsym_1.0.3+dfsg-2_armel.deb ---------------------------------------- new Debian package, version 2.0. size 1452748 bytes: control archive=556 bytes. 409 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libvcflib1-dbgsym Source: libvcflib Version: 1.0.3+dfsg-2 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1506 Depends: libvcflib1 (= 1.0.3+dfsg-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libvcflib1 Build-Ids: a27d3b4f6f4c3a2e4b50388d5161b4fd41d06c7e drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/a2/ -rw-r--r-- root/root 1531608 2022-10-07 14:26 ./usr/lib/debug/.build-id/a2/7d3b4f6f4c3a2e4b50388d5161b4fd41d06c7e.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1 libvcflib1_1.0.3+dfsg-2_armel.deb --------------------------------- new Debian package, version 2.0. size 134832 bytes: control archive=1212 bytes. 1251 bytes, 25 lines control 296 bytes, 4 lines md5sums 39 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libvcflib1 Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 404 Depends: libc6 (>= 2.29), libdisorder0 (>= 0.0.2), libfastahack0 (>= 1.0.0+dfsg), libgcc-s1 (>= 3.5), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/ -rw-r--r-- root/root 395456 2022-10-07 14:26 ./usr/lib/arm-linux-gnueabi/libvcflib.so.1 drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib1/ -rw-r--r-- root/root 1651 2022-10-07 14:26 ./usr/share/doc/libvcflib1/changelog.Debian.gz -rw-r--r-- root/root 2044 2022-10-07 14:26 ./usr/share/doc/libvcflib1/copyright drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 88 2022-10-07 14:26 ./usr/share/lintian/overrides/libvcflib1 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [619 B] Get:5 copy:/<>/apt_archive ./ Packages [684 B] Fetched 2266 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 MB of archives. After this operation, 51.5 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.2 [68.5 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.7-1 [1400 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.2 [165 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.0-1 [838 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:30 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.80-1 [101 kB] Get:31 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.54-1 [224 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:35 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:36 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:38 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.928-3 [9724 B] Get:39 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:40 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:41 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1+b1 [130 kB] Get:43 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:44 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:53 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:58 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:59 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:62 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:64 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:73 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:74 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:75 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.077-1 [217 kB] Get:76 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:80 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:84 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-3 [36.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:95 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:100 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:101 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.124-1 [56.1 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:104 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-2 [105 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.30-1 [57.3 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1+b1 [28.8 kB] Get:112 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:114 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-2 [12.4 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:118 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b4 [20.0 kB] Get:119 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB] Get:122 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:123 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:124 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:125 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:126 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:127 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 0s (156 MB/s) Selecting previously unselected package netbase. (Reading database ... 25371 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.2_all.deb ... Unpacking readline-common (8.2-1.2) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.7-1_amd64.deb ... Unpacking openssl (3.0.7-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../006-libreadline8_8.2-1.2_amd64.deb ... Unpacking libreadline8:amd64 (8.2-1.2) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-1_amd64.deb ... Unpacking gpgconf (2.2.40-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../008-libsqlite3-0_3.40.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.40.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../009-gpg_2.2.40-1_amd64.deb ... Unpacking gpg (2.2.40-1) ... Selecting previously unselected package iso-codes. Preparing to unpack .../010-iso-codes_4.12.0-1_all.deb ... Unpacking iso-codes (4.12.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../011-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../012-libapt-pkg-perl_0.1.40+b2_amd64.deb ... Unpacking libapt-pkg-perl (0.1.40+b2) ... Selecting previously unselected package libb-hooks-op-check-perl:amd64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-3_all.deb ... Unpacking libdynaloader-functions-perl (0.003-3) ... Selecting previously unselected package libdevel-callchecker-perl:amd64. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-2_amd64.deb ... Unpacking libdevel-callchecker-perl:amd64 (0.008-2) ... Selecting previously unselected package libparams-classify-perl:amd64. Preparing to unpack .../016-libparams-classify-perl_0.015-2+b1_amd64.deb ... Unpacking libparams-classify-perl:amd64 (0.015-2+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-2_all.deb ... Unpacking libtry-tiny-perl (0.31-2) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.63-1+b1_amd64.deb ... Unpacking libvariable-magic-perl (0.63-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.26-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.26-1) ... Selecting previously unselected package libberkeleydb-perl:amd64. Preparing to unpack .../023-libberkeleydb-perl_0.64-2+b1_amd64.deb ... Unpacking libberkeleydb-perl:amd64 (0.64-2+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../024-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../025-libhtml-tagset-perl_3.20-6_all.deb ... Unpacking libhtml-tagset-perl (3.20-6) ... Selecting previously unselected package libregexp-ipv6-perl. Preparing to unpack .../026-libregexp-ipv6-perl_0.03-3_all.deb ... Unpacking libregexp-ipv6-perl (0.03-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../027-liburi-perl_5.17-1_all.deb ... Unpacking liburi-perl (5.17-1) ... Selecting previously unselected package libhtml-parser-perl:amd64. Preparing to unpack .../028-libhtml-parser-perl_3.80-1_amd64.deb ... Unpacking libhtml-parser-perl:amd64 (3.80-1) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../029-libcgi-pm-perl_4.54-1_all.deb ... Unpacking libcgi-pm-perl (4.54-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../030-libclass-data-inheritable-perl_0.08-3_all.deb ... Unpacking libclass-data-inheritable-perl (0.08-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../031-libclass-method-modifiers-perl_2.13-2_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-2) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../032-libclass-xsaccessor-perl_1.19-4+b1_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b1) ... Selecting previously unselected package libclone-perl:amd64. Preparing to unpack .../033-libclone-perl_0.46-1_amd64.deb ... Unpacking libclone-perl:amd64 (0.46-1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../034-libconfig-tiny-perl_2.28-2_all.deb ... Unpacking libconfig-tiny-perl (2.28-2) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../035-libparams-util-perl_1.102-2+b1_amd64.deb ... Unpacking libparams-util-perl (1.102-2+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../036-libsub-install-perl_0.928-3_all.deb ... Unpacking libsub-install-perl (0.928-3) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../037-libdata-optlist-perl_0.112-1_all.deb ... Unpacking libdata-optlist-perl (0.112-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../038-libsub-exporter-perl_0.988-1_all.deb ... Unpacking libsub-exporter-perl (0.988-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../039-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:amd64. Preparing to unpack .../040-libcpanel-json-xs-perl_4.32-1+b1_amd64.deb ... Unpacking libcpanel-json-xs-perl:amd64 (4.32-1+b1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../041-libdevel-stacktrace-perl_2.0400-2_all.deb ... Unpacking libdevel-stacktrace-perl (2.0400-2) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../042-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../043-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../044-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libdata-dpath-perl. Preparing to unpack .../045-libdata-dpath-perl_0.58-2_all.deb ... Unpacking libdata-dpath-perl (0.58-2) ... Selecting previously unselected package libdata-messagepack-perl. Preparing to unpack .../046-libdata-messagepack-perl_1.02-1+b1_amd64.deb ... Unpacking libdata-messagepack-perl (1.02-1+b1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../047-libnet-domain-tld-perl_1.75-3_all.deb ... Unpacking libnet-domain-tld-perl (1.75-3) ... Selecting previously unselected package libdata-validate-domain-perl. Preparing to unpack .../048-libdata-validate-domain-perl_0.10-1.1_all.deb ... Unpacking libdata-validate-domain-perl (0.10-1.1) ... Selecting previously unselected package libnet-ipv6addr-perl. Preparing to unpack .../049-libnet-ipv6addr-perl_1.02-1_all.deb ... Unpacking libnet-ipv6addr-perl (1.02-1) ... Selecting previously unselected package libnet-netmask-perl. Preparing to unpack .../050-libnet-netmask-perl_2.0002-2_all.deb ... Unpacking libnet-netmask-perl (2.0002-2) ... Selecting previously unselected package libnetaddr-ip-perl. Preparing to unpack .../051-libnetaddr-ip-perl_4.079+dfsg-2+b1_amd64.deb ... Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Selecting previously unselected package libdata-validate-ip-perl. Preparing to unpack .../052-libdata-validate-ip-perl_0.30-1_all.deb ... Unpacking libdata-validate-ip-perl (0.30-1) ... Selecting previously unselected package libdata-validate-uri-perl. Preparing to unpack .../053-libdata-validate-uri-perl_0.07-2_all.deb ... Unpacking libdata-validate-uri-perl (0.07-2) ... Selecting previously unselected package libdevel-size-perl. Preparing to unpack .../054-libdevel-size-perl_0.83-2+b1_amd64.deb ... Unpacking libdevel-size-perl (0.83-2+b1) ... Selecting previously unselected package libemail-address-xs-perl. Preparing to unpack .../055-libemail-address-xs-perl_1.05-1+b1_amd64.deb ... Unpacking libemail-address-xs-perl (1.05-1+b1) ... Selecting previously unselected package libencode-locale-perl. Preparing to unpack .../056-libencode-locale-perl_1.05-3_all.deb ... Unpacking libencode-locale-perl (1.05-3) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../057-libipc-system-simple-perl_1.30-2_all.deb ... Unpacking libipc-system-simple-perl (1.30-2) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../058-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../059-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../060-libhttp-date-perl_6.05-2_all.deb ... Unpacking libhttp-date-perl (6.05-2) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../061-libfile-listing-perl_6.15-1_all.deb ... Unpacking libfile-listing-perl (6.15-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../062-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../063-libio-html-perl_1.004-3_all.deb ... Unpacking libio-html-perl (1.004-3) ... Selecting previously unselected package liblwp-mediatypes-perl. Preparing to unpack .../064-liblwp-mediatypes-perl_6.04-1_all.deb ... Unpacking liblwp-mediatypes-perl (6.04-1) ... Selecting previously unselected package libhttp-message-perl. Preparing to unpack .../065-libhttp-message-perl_6.44-1_all.deb ... Unpacking libhttp-message-perl (6.44-1) ... Selecting previously unselected package libhtml-form-perl. Preparing to unpack .../066-libhtml-form-perl_6.10-1_all.deb ... Unpacking libhtml-form-perl (6.10-1) ... Selecting previously unselected package libhtml-html5-entities-perl. Preparing to unpack .../067-libhtml-html5-entities-perl_0.004-3_all.deb ... Unpacking libhtml-html5-entities-perl (0.004-3) ... Selecting previously unselected package libhtml-tree-perl. Preparing to unpack .../068-libhtml-tree-perl_5.07-2_all.deb ... Unpacking libhtml-tree-perl (5.07-2) ... Selecting previously unselected package libhttp-cookies-perl. Preparing to unpack .../069-libhttp-cookies-perl_6.10-1_all.deb ... Unpacking libhttp-cookies-perl (6.10-1) ... Selecting previously unselected package libhttp-negotiate-perl. Preparing to unpack .../070-libhttp-negotiate-perl_6.01-1_all.deb ... Unpacking libhttp-negotiate-perl (6.01-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../071-perl-openssl-defaults_7+b1_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (7+b1) ... Selecting previously unselected package libnet-ssleay-perl:amd64. Preparing to unpack .../072-libnet-ssleay-perl_1.92-2+b1_amd64.deb ... Unpacking libnet-ssleay-perl:amd64 (1.92-2+b1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../073-libio-socket-ssl-perl_2.077-1_all.deb ... Unpacking libio-socket-ssl-perl (2.077-1) ... Selecting previously unselected package libnet-http-perl. Preparing to unpack .../074-libnet-http-perl_6.22-1_all.deb ... Unpacking libnet-http-perl (6.22-1) ... Selecting previously unselected package liblwp-protocol-https-perl. Preparing to unpack .../075-liblwp-protocol-https-perl_6.10-1_all.deb ... Unpacking liblwp-protocol-https-perl (6.10-1) ... Selecting previously unselected package libwww-robotrules-perl. Preparing to unpack .../076-libwww-robotrules-perl_6.02-1_all.deb ... Unpacking libwww-robotrules-perl (6.02-1) ... Selecting previously unselected package libwww-perl. Preparing to unpack .../077-libwww-perl_6.67-1_all.deb ... Unpacking libwww-perl (6.67-1) ... Selecting previously unselected package libhtml-tokeparser-simple-perl. Preparing to unpack .../078-libhtml-tokeparser-simple-perl_3.16-4_all.deb ... Unpacking libhtml-tokeparser-simple-perl (3.16-4) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../079-libimport-into-perl_1.002005-2_all.deb ... Unpacking libimport-into-perl (1.002005-2) ... Selecting previously unselected package libio-interactive-perl. Preparing to unpack .../080-libio-interactive-perl_1.023-2_all.deb ... Unpacking libio-interactive-perl (1.023-2) ... Selecting previously unselected package libipc-run3-perl. Preparing to unpack .../081-libipc-run3-perl_0.048-2_all.deb ... Unpacking libipc-run3-perl (0.048-2) ... Selecting previously unselected package libjson-maybexs-perl. Preparing to unpack .../082-libjson-maybexs-perl_1.004004-1_all.deb ... Unpacking libjson-maybexs-perl (1.004004-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../083-liblist-compare-perl_0.55-2_all.deb ... Unpacking liblist-compare-perl (0.55-2) ... Selecting previously unselected package liblist-someutils-perl. Preparing to unpack .../084-liblist-someutils-perl_0.58-3_all.deb ... Unpacking liblist-someutils-perl (0.58-3) ... Selecting previously unselected package liblist-utilsby-perl. Preparing to unpack .../085-liblist-utilsby-perl_0.12-2_all.deb ... Unpacking liblist-utilsby-perl (0.12-2) ... Selecting previously unselected package liblz1:amd64. Preparing to unpack .../086-liblz1_1.13-4_amd64.deb ... Unpacking liblz1:amd64 (1.13-4) ... Selecting previously unselected package liblzo2-2:amd64. Preparing to unpack .../087-liblzo2-2_2.10-2_amd64.deb ... Unpacking liblzo2-2:amd64 (2.10-2) ... Selecting previously unselected package libmarkdown2:amd64. Preparing to unpack .../088-libmarkdown2_2.2.7-2_amd64.deb ... Unpacking libmarkdown2:amd64 (2.2.7-2) ... Selecting previously unselected package libmldbm-perl. Preparing to unpack .../089-libmldbm-perl_2.05-4_all.deb ... Unpacking libmldbm-perl (2.05-4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../090-librole-tiny-perl_2.002004-1_all.deb ... Unpacking librole-tiny-perl (2.002004-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../091-libsub-quote-perl_2.006006-1_all.deb ... Unpacking libsub-quote-perl (2.006006-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../092-libmoo-perl_2.005004-3_all.deb ... Unpacking libmoo-perl (2.005004-3) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../093-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libmoox-aliases-perl. Preparing to unpack .../094-libmoox-aliases-perl_0.001006-2_all.deb ... Unpacking libmoox-aliases-perl (0.001006-2) ... Selecting previously unselected package libmouse-perl. Preparing to unpack .../095-libmouse-perl_2.5.10-1+b3_amd64.deb ... Unpacking libmouse-perl (2.5.10-1+b3) ... Selecting previously unselected package libpackage-stash-perl. Preparing to unpack .../096-libpackage-stash-perl_0.40-1_all.deb ... Unpacking libpackage-stash-perl (0.40-1) ... Selecting previously unselected package libsub-identify-perl. Preparing to unpack .../097-libsub-identify-perl_0.14-3_amd64.deb ... Unpacking libsub-identify-perl (0.14-3) ... Selecting previously unselected package libsub-name-perl:amd64. Preparing to unpack .../098-libsub-name-perl_0.26-2+b1_amd64.deb ... Unpacking libsub-name-perl:amd64 (0.26-2+b1) ... Selecting previously unselected package libnamespace-clean-perl. Preparing to unpack .../099-libnamespace-clean-perl_0.27-2_all.deb ... Unpacking libnamespace-clean-perl (0.27-2) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../100-libpath-tiny-perl_0.124-1_all.deb ... Unpacking libpath-tiny-perl (0.124-1) ... Selecting previously unselected package libperlio-gzip-perl. Preparing to unpack .../101-libperlio-gzip-perl_0.20-1+b1_amd64.deb ... Unpacking libperlio-gzip-perl (0.20-1+b1) ... Selecting previously unselected package libperlio-utf8-strict-perl. Preparing to unpack .../102-libperlio-utf8-strict-perl_0.010-1_amd64.deb ... Unpacking libperlio-utf8-strict-perl (0.010-1) ... Selecting previously unselected package libproc-processtable-perl:amd64. Preparing to unpack .../103-libproc-processtable-perl_0.634-1+b2_amd64.deb ... Unpacking libproc-processtable-perl:amd64 (0.634-1+b2) ... Selecting previously unselected package libregexp-wildcards-perl. Preparing to unpack .../104-libregexp-wildcards-perl_1.05-3_all.deb ... Unpacking libregexp-wildcards-perl (1.05-3) ... Selecting previously unselected package libsereal-decoder-perl. Preparing to unpack .../105-libsereal-decoder-perl_5.001+ds-1+b1_amd64.deb ... Unpacking libsereal-decoder-perl (5.001+ds-1+b1) ... Selecting previously unselected package libsereal-encoder-perl. Preparing to unpack .../106-libsereal-encoder-perl_5.001+ds-2_amd64.deb ... Unpacking libsereal-encoder-perl (5.001+ds-2) ... Selecting previously unselected package libsort-versions-perl. Preparing to unpack .../107-libsort-versions-perl_1.62-3_all.deb ... Unpacking libsort-versions-perl (1.62-3) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../108-libxs-parse-keyword-perl_0.30-1_amd64.deb ... Unpacking libxs-parse-keyword-perl (0.30-1) ... Selecting previously unselected package libsyntax-keyword-try-perl. Preparing to unpack .../109-libsyntax-keyword-try-perl_0.27-1+b1_amd64.deb ... Unpacking libsyntax-keyword-try-perl (0.27-1+b1) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../110-libterm-readkey-perl_2.38-2+b1_amd64.deb ... Unpacking libterm-readkey-perl (2.38-2+b1) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../111-libtext-levenshteinxs-perl_0.03-5+b1_amd64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b1) ... Selecting previously unselected package libtext-markdown-discount-perl. Preparing to unpack .../112-libtext-markdown-discount-perl_0.13-2_amd64.deb ... Unpacking libtext-markdown-discount-perl (0.13-2) ... Selecting previously unselected package libtext-xslate-perl:amd64. Preparing to unpack .../113-libtext-xslate-perl_3.5.9-1+b2_amd64.deb ... Unpacking libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Selecting previously unselected package libtime-duration-perl. Preparing to unpack .../114-libtime-duration-perl_1.21-1_all.deb ... Unpacking libtime-duration-perl (1.21-1) ... Selecting previously unselected package libtime-moment-perl. Preparing to unpack .../115-libtime-moment-perl_0.44-2+b1_amd64.deb ... Unpacking libtime-moment-perl (0.44-2+b1) ... Selecting previously unselected package libunicode-utf8-perl. Preparing to unpack .../116-libunicode-utf8-perl_0.62-1+b4_amd64.deb ... Unpacking libunicode-utf8-perl (0.62-1+b4) ... Selecting previously unselected package libwww-mechanize-perl. Preparing to unpack .../117-libwww-mechanize-perl_2.15-1_all.deb ... Unpacking libwww-mechanize-perl (2.15-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../118-libyaml-0-2_0.2.5-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.5-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../119-libyaml-libyaml-perl_0.84+ds-1+b1_amd64.deb ... Unpacking libyaml-libyaml-perl (0.84+ds-1+b1) ... Selecting previously unselected package plzip. Preparing to unpack .../120-plzip_1.10-4_amd64.deb ... Unpacking plzip (1.10-4) ... Selecting previously unselected package lzop. Preparing to unpack .../121-lzop_1.04-2_amd64.deb ... Unpacking lzop (1.04-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../122-patchutils_0.4.2-1_amd64.deb ... Unpacking patchutils (0.4.2-1) ... Selecting previously unselected package t1utils. Preparing to unpack .../123-t1utils_1.41-4_amd64.deb ... Unpacking t1utils (1.41-4) ... Selecting previously unselected package unzip. Preparing to unpack .../124-unzip_6.0-27_amd64.deb ... Unpacking unzip (6.0-27) ... Selecting previously unselected package lintian. Preparing to unpack .../125-lintian_2.115.3_all.deb ... Unpacking lintian (2.115.3) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armel. Preparing to unpack .../126-sbuild-build-depends-lintian-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b4) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:amd64 (3.40.0-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.84+ds-1+b1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl (5.001+ds-2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.928-3) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.30-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.27-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ... Setting up libpath-tiny-perl (0.124-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.7-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.2) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.001+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.12.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.13-2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.80-1) ... Setting up gpgconf (2.2.40-1) ... Setting up libio-socket-ssl-perl (2.077-1) ... Setting up gpg (2.2.40-1) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-3) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.36-6) ... Processing triggers for man-db (2.11.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 407300 Build-Time: 244 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 12 Job: libvcflib_1.0.3+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: libvcflib Package-Time: 268 Source-Version: 1.0.3+dfsg-2 Space: 407300 Status: successful Version: 1.0.3+dfsg-2 -------------------------------------------------------------------------------- Finished at 2022-12-04T18:46:51Z Build needed 00:04:28, 407300k disk space