sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | libvcflib 1.0.3+dfsg-2 (mips64el) Wed, 25 Jan 2023 02:35:52 +0000 | +==============================================================================+ Package: libvcflib Version: 1.0.3+dfsg-2 Source Version: 1.0.3+dfsg-2 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-1684a1bc-a0ee-4acb-b5a8-ac17d03beb87' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-5HqDok/resolver-uVJzqf' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main mips64el Packages [9031 kB] Fetched 9031 kB in 1s (8919 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'libvcflib' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/libvcflib.git Please use: git clone https://salsa.debian.org/med-team/libvcflib.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 7567 kB of source archives. Get:1 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (dsc) [2301 B] Get:2 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (tar) [7556 kB] Get:3 http://localhost:3142/debian sid/main libvcflib 1.0.3+dfsg-2 (diff) [8100 B] Fetched 7567 kB in 0s (105 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/libvcflib-5HqDok/libvcflib-1.0.3+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/libvcflib-5HqDok' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el Filtered Build-Depends: debhelper-compat (= 13), cmake, markdown, libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [490 B] Get:5 copy:/<>/apt_archive ./ Packages [560 B] Fetched 2007 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cmake cmake-data cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4 libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libdisorder-dev:mips64el libdisorder0:mips64el libelf1 libexpat1 libfastahack-dev:mips64el libfastahack0:mips64el libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6:mips64el libhts-dev:mips64el libhts3:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libjsoncpp25 libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0 libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncursesw6 libnettle8:mips64el libnghttp2-14 libnghttp2-14:mips64el libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libpipeline1 libpkgconf3 libproc2-0 libpsl5 libpsl5:mips64el librhash0 librtmp1 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsmithwaterman-dev:mips64el libsmithwaterman0:mips64el libssh2-1 libssh2-1:mips64el libssl3:mips64el libssw-dev:mips64el libssw0:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtabixpp-dev:mips64el libtabixpp0:mips64el libtasn1-6:mips64el libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring2:mips64el libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db markdown pkg-config:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch g++-12-multilib-mips64el-linux-gnuabi64 gcc-12-doc gcc-12-multilib-mips64el-linux-gnuabi64 manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el libcurl4-doc:mips64el libgnutls28-dev:mips64el libidn11-dev:mips64el libkrb5-dev:mips64el libldap2-dev:mips64el librtmp-dev:mips64el libssh2-1-dev:mips64el gnutls-bin:mips64el krb5-doc:mips64el krb5-user:mips64el liblzma-doc:mips64el libstdc++-11-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el ca-certificates:mips64el ca-certificates libarchive-cpio-perl krb5-locales:mips64el libldap-common libldap-common:mips64el libgpm2 publicsuffix publicsuffix:mips64el libsasl2-modules libsasl2-modules:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cmake cmake-data cpp-12-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-11-base:mips64el gcc-12-base:mips64el gcc-12-cross-base-mipsen gcc-12-mips64el-linux-gnuabi64 gcc-12-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mips64el libatomic1-mips64el-cross libbrotli1 libbrotli1:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libcom-err2:mips64el libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libcurl3-gnutls:mips64el libcurl4 libcurl4-gnutls-dev:mips64el libdb5.3:mips64el libdebhelper-perl libdebian-dpkgcross-perl libdeflate-dev:mips64el libdeflate0:mips64el libdisorder-dev:mips64el libdisorder0:mips64el libelf1 libexpat1 libfastahack-dev:mips64el libfastahack0:mips64el libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:mips64el libgcc-12-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp10:mips64el libgnutls30:mips64el libgomp1:mips64el libgomp1-mips64el-cross libgssapi-krb5-2:mips64el libhogweed6:mips64el libhts-dev:mips64el libhts3:mips64el libhtscodecs2:mips64el libicu72 libidn2-0:mips64el libio-string-perl libjsoncpp25 libk5crypto3:mips64el libkeyutils1:mips64el libkrb5-3:mips64el libkrb5support0:mips64el libldap-2.5-0 libldap-2.5-0:mips64el liblocale-gettext-perl liblzma-dev:mips64el liblzma5:mips64el libmagic-mgc libmagic1 libncursesw6 libnettle8:mips64el libnghttp2-14 libnghttp2-14:mips64el libnsl-dev:mips64el libnsl2:mips64el libp11-kit0:mips64el libpipeline1 libpkgconf3 libproc2-0 libpsl5 libpsl5:mips64el librhash0 librtmp1 librtmp1:mips64el libsasl2-2 libsasl2-2:mips64el libsasl2-modules-db libsasl2-modules-db:mips64el libsmithwaterman-dev:mips64el libsmithwaterman0:mips64el libssh2-1 libssh2-1:mips64el libssl3:mips64el libssw-dev:mips64el libssw0:mips64el libstdc++-11-dev:mips64el libstdc++-12-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libsub-override-perl libtabixpp-dev:mips64el libtabixpp0:mips64el libtasn1-6:mips64el libtirpc-dev:mips64el libtirpc3:mips64el libtool libuchardet0 libunistring2:mips64el libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev:mips64el linux-libc-dev-mips64el-cross m4 man-db markdown pkg-config:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:mips64el sensible-utils ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 156 newly installed, 0 to remove and 0 not upgraded. Need to get 97.9 MB of archives. After this operation, 392 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4-1 [134 kB] Get:4 http://localhost:3142/debian sid/main amd64 libproc2-0 amd64 2:4.0.2-3 [62.8 kB] Get:5 http://localhost:3142/debian sid/main amd64 procps amd64 2:4.0.2-3 [709 kB] Get:6 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-2 [305 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-2 [104 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-2 [42.4 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-10 [160 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:12 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-9 [916 kB] Get:13 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-4 [86.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:15 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-1 [1386 kB] Get:16 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:17 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-2 [287 kB] Get:18 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:19 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-10 [495 kB] Get:22 http://localhost:3142/debian sid/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.39.90.20230104-1cross1 [2801 kB] Get:23 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:24 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.1+b2 [687 kB] Get:25 http://localhost:3142/debian sid/main amd64 libarchive13 amd64 3.6.2-1 [343 kB] Get:26 http://localhost:3142/debian sid/main amd64 libbrotli1 amd64 1.0.9-2+b5 [279 kB] Get:27 http://localhost:3142/debian sid/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg-10 [20.3 kB] Get:28 http://localhost:3142/debian sid/main amd64 libsasl2-2 amd64 2.1.28+dfsg-10 [59.7 kB] Get:29 http://localhost:3142/debian sid/main amd64 libldap-2.5-0 amd64 2.5.13+dfsg-3 [183 kB] Get:30 http://localhost:3142/debian sid/main amd64 libnghttp2-14 amd64 1.51.0-1 [71.5 kB] Get:31 http://localhost:3142/debian sid/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:32 http://localhost:3142/debian sid/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:33 http://localhost:3142/debian sid/main amd64 libssh2-1 amd64 1.10.0-3+b1 [179 kB] Get:34 http://localhost:3142/debian sid/main amd64 libcurl4 amd64 7.87.0-2 [376 kB] Get:35 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.5.0-1 [99.3 kB] Get:36 http://localhost:3142/debian sid/main amd64 libjsoncpp25 amd64 1.9.5-4 [78.6 kB] Get:37 http://localhost:3142/debian sid/main amd64 librhash0 amd64 1.4.3-3 [134 kB] Get:38 http://localhost:3142/debian sid/main amd64 libuv1 amd64 1.44.2-1 [140 kB] Get:39 http://localhost:3142/debian sid/main amd64 cmake-data all 3.25.1-1 [2026 kB] Get:40 http://localhost:3142/debian sid/main amd64 cmake amd64 3.25.1-1 [8692 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64-base amd64 12.2.0-14cross1 [37.7 kB] Get:42 http://localhost:3142/debian sid/main amd64 cpp-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross1 [8090 kB] Get:43 http://localhost:3142/debian sid/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [3296 B] Get:44 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:45 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base-mipsen all 12.2.0-14cross1 [33.3 kB] Get:46 http://localhost:3142/debian sid/main amd64 libc6-mips64el-cross all 2.36-8cross1 [1056 kB] Get:47 http://localhost:3142/debian sid/main amd64 libgcc-s1-mips64el-cross all 12.2.0-14cross1 [70.7 kB] Get:48 http://localhost:3142/debian sid/main amd64 libgomp1-mips64el-cross all 12.2.0-14cross1 [102 kB] Get:49 http://localhost:3142/debian sid/main amd64 libatomic1-mips64el-cross all 12.2.0-14cross1 [7172 B] Get:50 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-mips64el-cross all 12.2.0-14cross1 [294 kB] Get:51 http://localhost:3142/debian sid/main amd64 gcc-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross1 [15.9 MB] Get:52 http://localhost:3142/debian sid/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1480 B] Get:53 http://localhost:3142/debian sid/main amd64 libstdc++6-mips64el-cross all 12.2.0-14cross1 [504 kB] Get:54 http://localhost:3142/debian sid/main amd64 linux-libc-dev-mips64el-cross all 6.1.4-1cross1 [1812 kB] Get:55 http://localhost:3142/debian sid/main amd64 libc6-dev-mips64el-cross all 2.36-8cross1 [1572 kB] Get:56 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-mips64el-cross all 12.2.0-14cross1 [2065 kB] Get:57 http://localhost:3142/debian sid/main amd64 g++-12-mips64el-linux-gnuabi64 amd64 12.2.0-14cross1 [9008 kB] Get:58 http://localhost:3142/debian sid/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:12.2.0-4 [1188 B] Get:59 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:60 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:65 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:66 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:69 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:70 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:71 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:72 http://localhost:3142/debian sid/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:73 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:74 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:75 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:76 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:78 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:79 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:80 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:81 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:82 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-10 [1300 kB] Get:83 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:84 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:85 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:86 http://localhost:3142/debian sid/main mips64el gcc-11-base mips64el 11.3.0-11 [38.3 kB] Get:87 http://localhost:3142/debian sid/main mips64el gcc-12-base mips64el 12.2.0-14 [37.5 kB] Get:88 http://localhost:3142/debian sid/main mips64el libgcc-s1 mips64el 12.2.0-14 [70.5 kB] Get:89 http://localhost:3142/debian sid/main mips64el libc6 mips64el 2.36-8 [2365 kB] Get:90 http://localhost:3142/debian sid/main mips64el libatomic1 mips64el 12.2.0-14 [7444 B] Get:91 http://localhost:3142/debian sid/main mips64el libbrotli1 mips64el 1.0.9-2+b5 [292 kB] Get:92 http://localhost:3142/debian sid/main mips64el libbz2-1.0 mips64el 1.0.8-5+b1 [48.8 kB] Get:93 http://localhost:3142/debian sid/main mips64el linux-libc-dev mips64el 6.1.7-1 [1704 kB] Get:94 http://localhost:3142/debian sid/main mips64el libcrypt1 mips64el 1:4.4.33-2 [94.0 kB] Get:95 http://localhost:3142/debian sid/main mips64el libcrypt-dev mips64el 1:4.4.33-2 [127 kB] Get:96 http://localhost:3142/debian sid/main mips64el libcom-err2 mips64el 1.46.6~rc1-1.1 [16.0 kB] Get:97 http://localhost:3142/debian sid/main mips64el libkrb5support0 mips64el 1.20.1-1 [30.1 kB] Get:98 http://localhost:3142/debian sid/main mips64el libk5crypto3 mips64el 1.20.1-1 [85.2 kB] Get:99 http://localhost:3142/debian sid/main mips64el libkeyutils1 mips64el 1.6.3-2 [8432 B] Get:100 http://localhost:3142/debian sid/main mips64el libssl3 mips64el 3.0.7-2 [1479 kB] Get:101 http://localhost:3142/debian sid/main mips64el libkrb5-3 mips64el 1.20.1-1 [296 kB] Get:102 http://localhost:3142/debian sid/main mips64el libgssapi-krb5-2 mips64el 1.20.1-1 [117 kB] Get:103 http://localhost:3142/debian sid/main mips64el libtirpc3 mips64el 1.3.3+ds-1 [74.9 kB] Get:104 http://localhost:3142/debian sid/main mips64el libnsl2 mips64el 1.3.0-2 [35.5 kB] Get:105 http://localhost:3142/debian sid/main mips64el libtirpc-dev mips64el 1.3.3+ds-1 [200 kB] Get:106 http://localhost:3142/debian sid/main mips64el libnsl-dev mips64el 1.3.0-2 [70.3 kB] Get:107 http://localhost:3142/debian sid/main mips64el libc6-dev mips64el 2.36-8 [1576 kB] Get:108 http://localhost:3142/debian sid/main mips64el libbz2-dev mips64el 1.0.8-5+b1 [33.9 kB] Get:109 http://localhost:3142/debian sid/main mips64el libgmp10 mips64el 2:6.2.1+dfsg1-1.1 [551 kB] Get:110 http://localhost:3142/debian sid/main mips64el libnettle8 mips64el 3.8.1-2 [295 kB] Get:111 http://localhost:3142/debian sid/main mips64el libhogweed6 mips64el 3.8.1-2 [320 kB] Get:112 http://localhost:3142/debian sid/main mips64el libunistring2 mips64el 1.0-2 [417 kB] Get:113 http://localhost:3142/debian sid/main mips64el libidn2-0 mips64el 2.3.3-1+b1 [122 kB] Get:114 http://localhost:3142/debian sid/main mips64el libffi8 mips64el 3.4.4-1 [23.2 kB] Get:115 http://localhost:3142/debian sid/main mips64el libp11-kit0 mips64el 0.24.1-2 [283 kB] Get:116 http://localhost:3142/debian sid/main mips64el libtasn1-6 mips64el 4.19.0-2 [54.1 kB] Get:117 http://localhost:3142/debian sid/main mips64el libgnutls30 mips64el 3.7.8-4 [1214 kB] Get:118 http://localhost:3142/debian sid/main mips64el libdb5.3 mips64el 5.3.28+dfsg2-1 [605 kB] Get:119 http://localhost:3142/debian sid/main mips64el libsasl2-modules-db mips64el 2.1.28+dfsg-10 [19.7 kB] Get:120 http://localhost:3142/debian sid/main mips64el libsasl2-2 mips64el 2.1.28+dfsg-10 [54.7 kB] Get:121 http://localhost:3142/debian sid/main mips64el libldap-2.5-0 mips64el 2.5.13+dfsg-3 [159 kB] Get:122 http://localhost:3142/debian sid/main mips64el libnghttp2-14 mips64el 1.51.0-1 [66.8 kB] Get:123 http://localhost:3142/debian sid/main mips64el libpsl5 mips64el 0.21.0-1.2 [57.1 kB] Get:124 http://localhost:3142/debian sid/main mips64el zlib1g mips64el 1:1.2.13.dfsg-1 [77.9 kB] Get:125 http://localhost:3142/debian sid/main mips64el librtmp1 mips64el 2.4+20151223.gitfa8646d.1-2+b2 [56.0 kB] Get:126 http://localhost:3142/debian sid/main mips64el libssh2-1 mips64el 1.10.0-3+b1 [170 kB] Get:127 http://localhost:3142/debian sid/main mips64el libzstd1 mips64el 1.5.2+dfsg2-3 [273 kB] Get:128 http://localhost:3142/debian sid/main mips64el libcurl3-gnutls mips64el 7.87.0-2 [339 kB] Get:129 http://localhost:3142/debian sid/main mips64el libcurl4-gnutls-dev mips64el 7.87.0-2 [478 kB] Get:130 http://localhost:3142/debian sid/main mips64el libdeflate0 mips64el 1.14-1 [49.3 kB] Get:131 http://localhost:3142/debian sid/main mips64el libdeflate-dev mips64el 1.14-1 [49.5 kB] Get:132 http://localhost:3142/debian sid/main mips64el libdisorder0 mips64el 0.0.2+git20130809.8062ee1-4+b1 [4984 B] Get:133 http://localhost:3142/debian sid/main mips64el libdisorder-dev mips64el 0.0.2+git20130809.8062ee1-4+b1 [4976 B] Get:134 http://localhost:3142/debian sid/main mips64el libstdc++6 mips64el 12.2.0-14 [546 kB] Get:135 http://localhost:3142/debian sid/main mips64el libfastahack0 mips64el 1.0.0+dfsg-10 [24.8 kB] Get:136 http://localhost:3142/debian sid/main mips64el libfastahack-dev mips64el 1.0.0+dfsg-10 [29.9 kB] Get:137 http://localhost:3142/debian sid/main mips64el libgomp1 mips64el 12.2.0-14 [104 kB] Get:138 http://localhost:3142/debian sid/main mips64el libgcc-11-dev mips64el 11.3.0-11 [280 kB] Get:139 http://localhost:3142/debian sid/main mips64el libhtscodecs2 mips64el 1.3.0-4 [69.0 kB] Get:140 http://localhost:3142/debian sid/main mips64el liblzma5 mips64el 5.4.1-0.0 [200 kB] Get:141 http://localhost:3142/debian sid/main mips64el libhts3 mips64el 1.16+ds-3 [387 kB] Get:142 http://localhost:3142/debian sid/main mips64el liblzma-dev mips64el 5.4.1-0.0 [263 kB] Get:143 http://localhost:3142/debian sid/main mips64el zlib1g-dev mips64el 1:1.2.13.dfsg-1 [909 kB] Get:144 http://localhost:3142/debian sid/main mips64el libhts-dev mips64el 1.16+ds-3 [1627 kB] Get:145 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1 [36.1 kB] Get:146 http://localhost:3142/debian sid/main mips64el libsmithwaterman0 mips64el 0.0+git20160702.2610e25-12+b1 [33.8 kB] Get:147 http://localhost:3142/debian sid/main mips64el libsmithwaterman-dev mips64el 0.0+git20160702.2610e25-12+b1 [43.5 kB] Get:148 http://localhost:3142/debian sid/main mips64el libssw0 mips64el 1.1-13 [26.8 kB] Get:149 http://localhost:3142/debian sid/main mips64el libssw-dev mips64el 1.1-13 [31.3 kB] Get:150 http://localhost:3142/debian sid/main mips64el libstdc++-11-dev mips64el 11.3.0-11 [2004 kB] Get:151 http://localhost:3142/debian sid/main mips64el libtabixpp0 mips64el 1.1.2-1 [9580 B] Get:152 http://localhost:3142/debian sid/main mips64el libtabixpp-dev mips64el 1.1.2-1 [9660 B] Get:153 http://localhost:3142/debian sid/main amd64 markdown all 1.0.1-12 [17.7 kB] Get:154 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1 [29.5 kB] Get:155 http://localhost:3142/debian sid/main mips64el pkgconf mips64el 1.8.1-1 [25.9 kB] Get:156 http://localhost:3142/debian sid/main mips64el pkg-config mips64el 1.8.1-1 [13.7 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 97.9 MB in 1s (171 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15192 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.4-1_amd64.deb ... Unpacking libncursesw6:amd64 (6.4-1) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.2-3_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.2-3) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.2-3_amd64.deb ... Unpacking procps (2:4.0.2-3) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.44-2_amd64.deb ... Unpacking libmagic-mgc (1:5.44-2) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../006-libmagic1_1%3a5.44-2_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-2) ... Selecting previously unselected package file. Preparing to unpack .../007-file_1%3a5.44-2_amd64.deb ... Unpacking file (1:5.44-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../008-gettext-base_0.21-10_amd64.deb ... Unpacking gettext-base (0.21-10) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../009-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../010-groff-base_1.22.4-9_amd64.deb ... Unpacking groff-base (1.22.4-9) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../011-bsdextrautils_2.38.1-4_amd64.deb ... Unpacking bsdextrautils (2.38.1-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../012-libpipeline1_1.5.7-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.7-1) ... Selecting previously unselected package man-db. Preparing to unpack .../013-man-db_2.11.2-1_amd64.deb ... Unpacking man-db (2.11.2-1) ... Selecting previously unselected package ucf. Preparing to unpack .../014-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package m4. Preparing to unpack .../015-m4_1.4.19-2_amd64.deb ... Unpacking m4 (1.4.19-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../016-autoconf_2.71-3_all.deb ... Unpacking autoconf (2.71-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../017-autotools-dev_20220109.1_all.deb ... Unpacking autotools-dev (20220109.1) ... Selecting previously unselected package automake. Preparing to unpack .../018-automake_1%3a1.16.5-1.3_all.deb ... Unpacking automake (1:1.16.5-1.3) ... Selecting previously unselected package autopoint. Preparing to unpack .../019-autopoint_0.21-10_all.deb ... Unpacking autopoint (0.21-10) ... Selecting previously unselected package binutils-mips64el-linux-gnuabi64. Preparing to unpack .../020-binutils-mips64el-linux-gnuabi64_2.39.90.20230104-1cross1_amd64.deb ... Unpacking binutils-mips64el-linux-gnuabi64 (2.39.90.20230104-1cross1) ... Selecting previously unselected package libicu72:amd64. Preparing to unpack .../021-libicu72_72.1-3_amd64.deb ... Unpacking libicu72:amd64 (72.1-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../022-libxml2_2.9.14+dfsg-1.1+b2_amd64.deb ... Unpacking libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../023-libarchive13_3.6.2-1_amd64.deb ... Unpacking libarchive13:amd64 (3.6.2-1) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../024-libbrotli1_1.0.9-2+b5_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b5) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../025-libsasl2-modules-db_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../026-libsasl2-2_2.1.28+dfsg-10_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.28+dfsg-10) ... Selecting previously unselected package libldap-2.5-0:amd64. Preparing to unpack .../027-libldap-2.5-0_2.5.13+dfsg-3_amd64.deb ... Unpacking libldap-2.5-0:amd64 (2.5.13+dfsg-3) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../028-libnghttp2-14_1.51.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.51.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../029-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... 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Unpacking librhash0:amd64 (1.4.3-3) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../036-libuv1_1.44.2-1_amd64.deb ... Unpacking libuv1:amd64 (1.44.2-1) ... Selecting previously unselected package cmake-data. Preparing to unpack .../037-cmake-data_3.25.1-1_all.deb ... Unpacking cmake-data (3.25.1-1) ... Selecting previously unselected package cmake. Preparing to unpack .../038-cmake_3.25.1-1_amd64.deb ... Unpacking cmake (3.25.1-1) ... Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64-base:amd64. Preparing to unpack .../039-gcc-12-mips64el-linux-gnuabi64-base_12.2.0-14cross1_amd64.deb ... Unpacking gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.2.0-14cross1) ... Selecting previously unselected package cpp-12-mips64el-linux-gnuabi64. Preparing to unpack .../040-cpp-12-mips64el-linux-gnuabi64_12.2.0-14cross1_amd64.deb ... Unpacking cpp-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... 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Selecting previously unselected package libgomp1-mips64el-cross. Preparing to unpack .../046-libgomp1-mips64el-cross_12.2.0-14cross1_all.deb ... Unpacking libgomp1-mips64el-cross (12.2.0-14cross1) ... Selecting previously unselected package libatomic1-mips64el-cross. Preparing to unpack .../047-libatomic1-mips64el-cross_12.2.0-14cross1_all.deb ... Unpacking libatomic1-mips64el-cross (12.2.0-14cross1) ... Selecting previously unselected package libgcc-12-dev-mips64el-cross. Preparing to unpack .../048-libgcc-12-dev-mips64el-cross_12.2.0-14cross1_all.deb ... Unpacking libgcc-12-dev-mips64el-cross (12.2.0-14cross1) ... Selecting previously unselected package gcc-12-mips64el-linux-gnuabi64. Preparing to unpack .../049-gcc-12-mips64el-linux-gnuabi64_12.2.0-14cross1_amd64.deb ... Unpacking gcc-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... Selecting previously unselected package gcc-mips64el-linux-gnuabi64. Preparing to unpack .../050-gcc-mips64el-linux-gnuabi64_4%3a12.2.0-4_amd64.deb ... Unpacking gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Selecting previously unselected package libstdc++6-mips64el-cross. Preparing to unpack .../051-libstdc++6-mips64el-cross_12.2.0-14cross1_all.deb ... Unpacking libstdc++6-mips64el-cross (12.2.0-14cross1) ... Selecting previously unselected package linux-libc-dev-mips64el-cross. Preparing to unpack .../052-linux-libc-dev-mips64el-cross_6.1.4-1cross1_all.deb ... Unpacking linux-libc-dev-mips64el-cross (6.1.4-1cross1) ... Selecting previously unselected package libc6-dev-mips64el-cross. Preparing to unpack .../053-libc6-dev-mips64el-cross_2.36-8cross1_all.deb ... Unpacking libc6-dev-mips64el-cross (2.36-8cross1) ... Selecting previously unselected package libstdc++-12-dev-mips64el-cross. Preparing to unpack .../054-libstdc++-12-dev-mips64el-cross_12.2.0-14cross1_all.deb ... Unpacking libstdc++-12-dev-mips64el-cross (12.2.0-14cross1) ... Selecting previously unselected package g++-12-mips64el-linux-gnuabi64. Preparing to unpack .../055-g++-12-mips64el-linux-gnuabi64_12.2.0-14cross1_amd64.deb ... Unpacking g++-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... Selecting previously unselected package g++-mips64el-linux-gnuabi64. Preparing to unpack .../056-g++-mips64el-linux-gnuabi64_4%3a12.2.0-4_amd64.deb ... Unpacking g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../057-libconfig-inifiles-perl_3.000003-2_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-2) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../058-libio-string-perl_1.08-4_all.deb ... Unpacking libio-string-perl (1.08-4) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../059-libxml-namespacesupport-perl_1.12-2_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-2) ... Selecting previously unselected package libxml-sax-base-perl. 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Setting up libncursesw6:amd64 (6.4-1) ... Setting up libsasl2-2:amd64 (2.1.28+dfsg-10) ... Setting up autoconf (2.71-3) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up librhash0:amd64 (1.4.3-3) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up procps (2:4.0.2-3) ... Setting up libsub-override-perl (0.09-4) ... Setting up libssh2-1:amd64 (1.10.0-3+b1) ... Setting up linux-libc-dev-mips64el-cross (6.1.4-1cross1) ... Setting up cmake-data (3.25.1-1) ... Setting up gcc-12-mips64el-linux-gnuabi64-base:amd64 (12.2.0-14cross1) ... Setting up cpp-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up cpp-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libgomp1-mips64el-cross (12.2.0-14cross1) ... Setting up libgcc-s1-mips64el-cross (12.2.0-14cross1) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.1+b2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up markdown (1.0.1-12) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up gettext (0.21-10) ... Setting up libatomic1-mips64el-cross (12.2.0-14cross1) ... Setting up libtool (2.4.7-5) ... Setting up libarchive13:amd64 (3.6.2-1) ... Setting up libldap-2.5-0:amd64 (2.5.13+dfsg-3) ... Setting up pkgconf:mips64el (1.8.1-1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libc6-dev-mips64el-cross (2.36-8cross1) ... Setting up pkg-config:mips64el (1.8.1-1) ... Setting up ucf (3.0043) ... Setting up libstdc++6-mips64el-cross (12.2.0-14cross1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-9) ... Setting up libcurl4:amd64 (7.87.0-2) ... Setting up libgcc-12-dev-mips64el-cross (12.2.0-14cross1) ... Setting up gcc-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... Setting up libstdc++-12-dev-mips64el-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up g++-12-mips64el-linux-gnuabi64 (12.2.0-14cross1) ... Setting up man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up cmake (3.25.1-1) ... Setting up g++-mips64el-linux-gnuabi64 (4:12.2.0-4) ... Setting up debhelper (13.11.4) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (12.2.0-14) ... Setting up libc6:mips64el (2.36-8) ... Setting up libffi8:mips64el (3.4.4-1) ... Setting up libtasn1-6:mips64el (4.19.0-2) ... Setting up libbz2-1.0:mips64el (1.0.8-5+b1) ... Setting up libdb5.3:mips64el (5.3.28+dfsg2-1) ... Setting up libstdc++6:mips64el (12.2.0-14) ... Setting up libhtscodecs2:mips64el (1.3.0-4) ... Setting up libdisorder0:mips64el (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libzstd1:mips64el (1.5.2+dfsg2-3) ... Setting up libkeyutils1:mips64el (1.6.3-2) ... Setting up liblzma5:mips64el (5.4.1-0.0) ... Setting up libbrotli1:mips64el (1.0.9-2+b5) ... Setting up libssl3:mips64el (3.0.7-2) ... Setting up libsmithwaterman0:mips64el (0.0+git20160702.2610e25-12+b1) ... Setting up libnghttp2-14:mips64el (1.51.0-1) ... Setting up libunistring2:mips64el (1.0-2) ... Setting up libdeflate0:mips64el (1.14-1) ... Setting up zlib1g:mips64el (1:1.2.13.dfsg-1) ... Setting up libcrypt1:mips64el (1:4.4.33-2) ... Setting up libidn2-0:mips64el (2.3.3-1+b1) ... Setting up libcom-err2:mips64el (1.46.6~rc1-1.1) ... Setting up libgomp1:mips64el (12.2.0-14) ... Setting up libfastahack0:mips64el (1.0.0+dfsg-10) ... Setting up libkrb5support0:mips64el (1.20.1-1) ... Setting up libsasl2-modules-db:mips64el (2.1.28+dfsg-10) ... Setting up libfastahack-dev:mips64el (1.0.0+dfsg-10) ... Setting up libnettle8:mips64el (3.8.1-2) ... Setting up libgmp10:mips64el (2:6.2.1+dfsg1-1.1) ... Setting up libp11-kit0:mips64el (0.24.1-2) ... Setting up libatomic1:mips64el (12.2.0-14) ... Setting up libk5crypto3:mips64el (1.20.1-1) ... Setting up libdisorder-dev:mips64el (0.0.2+git20130809.8062ee1-4+b1) ... Setting up libsasl2-2:mips64el (2.1.28+dfsg-10) ... Setting up liblzma-dev:mips64el (5.4.1-0.0) ... Setting up libgcc-11-dev:mips64el (11.3.0-11) ... Setting up libcrypt-dev:mips64el (1:4.4.33-2) ... Setting up libssh2-1:mips64el (1.10.0-3+b1) ... Setting up libkrb5-3:mips64el (1.20.1-1) ... Setting up libdeflate-dev:mips64el (1.14-1) ... Setting up libssw0:mips64el (1.1-13) ... Setting up libpsl5:mips64el (0.21.0-1.2) ... Setting up libhogweed6:mips64el (3.8.1-2) ... Setting up libssw-dev:mips64el (1.1-13) ... Setting up libgnutls30:mips64el (3.7.8-4) ... Setting up librtmp1:mips64el (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up libgssapi-krb5-2:mips64el (1.20.1-1) ... Setting up libsmithwaterman-dev:mips64el (0.0+git20160702.2610e25-12+b1) ... Setting up libtirpc3:mips64el (1.3.3+ds-1) ... Setting up libldap-2.5-0:mips64el (2.5.13+dfsg-3) ... Setting up libtirpc-dev:mips64el (1.3.3+ds-1) ... Setting up libnsl2:mips64el (1.3.0-2) ... Setting up libcurl3-gnutls:mips64el (7.87.0-2) ... Setting up libcurl4-gnutls-dev:mips64el (7.87.0-2) ... Setting up libnsl-dev:mips64el (1.3.0-2) ... Setting up libc6-dev:mips64el (2.36-8) ... Setting up libbz2-dev:mips64el (1.0.8-5+b1) ... Setting up libhts3:mips64el (1.16+ds-3) ... Setting up libstdc++-11-dev:mips64el (11.3.0-11) ... Setting up zlib1g-dev:mips64el (1:1.2.13.dfsg-1) ... Setting up libtabixpp0:mips64el (1.1.2-1) ... Setting up libhts-dev:mips64el (1.16+ds-3) ... Setting up libtabixpp-dev:mips64el (1.1.2-1) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-19-amd64 #1 SMP Debian 5.10.149-2 (2022-10-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.18 g++-11_11.3.0-11 g++-12_12.2.0-14 gcc-11_11.3.0-11 gcc-12_12.2.0-14 libc6-dev_2.36-8 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mips64el-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-mips64el-cross_12.2.0-14cross1 linux-libc-dev_6.1.7-1 Package versions: adduser_3.130 apt_2.5.5 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-10 autotools-dev_20220109.1 base-files_12.3 base-passwd_3.6.1 bash_5.2.15-2 binutils_2.40-2 binutils-common_2.40-2 binutils-mips64el-linux-gnuabi64_2.39.90.20230104-1cross1 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-4 bsdutils_1:2.38.1-4 build-essential_12.9 bzip2_1.0.8-5+b1 cmake_3.25.1-1 cmake-data_3.25.1-1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-11 cpp-12_12.2.0-14 cpp-12-mips64el-linux-gnuabi64_12.2.0-14cross1 cpp-mips64el-linux-gnuabi64_4:12.2.0-4 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2021.1.1 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-3 dpkg_1.21.18 dpkg-cross_2.6.20 dpkg-dev_1.21.18 dwz_0.15-1 e2fsprogs_1.46.6~rc1-1.1 fakeroot_1.30.1-1.1 file_1:5.44-2 findutils_4.9.0-4 g++_4:12.2.0-3 g++-11_11.3.0-11 g++-12_12.2.0-14 g++-12-mips64el-linux-gnuabi64_12.2.0-14cross1 g++-mips64el-linux-gnuabi64_4:12.2.0-4 gcc_4:12.2.0-3 gcc-11_11.3.0-11 gcc-11-base_11.3.0-11 gcc-12_12.2.0-14 gcc-12-base_12.2.0-14 gcc-12-cross-base-mipsen_12.2.0-14cross1 gcc-12-mips64el-linux-gnuabi64_12.2.0-14cross1 gcc-12-mips64el-linux-gnuabi64-base_12.2.0-14cross1 gcc-9-base_9.5.0-2+b3 gcc-mips64el-linux-gnuabi64_4:12.2.0-4 gettext_0.21-10 gettext-base_0.21-10 gpgv_2.2.40-1 grep_3.8-3 groff-base_1.22.4-9 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.5.5 libarchive-zip-perl_1.68-1 libarchive13_3.6.2-1 libasan6_11.3.0-11 libasan8_12.2.0-14 libatomic1_12.2.0-14 libatomic1-mips64el-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.7-1.1 libaudit1_1:3.0.7-1.1+b2 libbinutils_2.40-2 libblkid1_2.38.1-4 libbrotli1_1.0.9-2+b5 libbz2-1.0_1.0.8-5+b1 libbz2-dev_1.0.8-5+b1 libc-bin_2.36-8 libc-dev-bin_2.36-8 libc6_2.36-8 libc6-dev_2.36-8 libc6-dev-mips64el-cross_2.36-8cross1 libc6-mips64el-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b2 libcap2_1:2.66-3 libcc1-0_12.2.0-14 libcom-err2_1.46.6~rc1-1.1 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libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.8-4 libgomp1_12.2.0-14 libgomp1-mips64el-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-1 libhogweed6_3.8.1-2 libhts-dev_1.16+ds-3 libhts3_1.16+ds-3 libhtscodecs2_1.3.0-4 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.25-1 libitm1_12.2.0-14 libjansson4_2.14-2 libjsoncpp25_1.9.5-4 libk5crypto3_1.20.1-1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1 libkrb5support0_1.20.1-1 libldap-2.5-0_2.5.13+dfsg-3 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblz4-1_1.9.4-1 liblzma-dev_5.4.1-0.0 liblzma5_5.4.1-0.0 libmagic-mgc_1:5.44-2 libmagic1_1:5.44-2 libmd0_1.0.4-2 libmount1_2.38.1-4 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libncursesw6_6.4-1 libnettle8_3.8.1-2 libnghttp2-14_1.51.0-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libpkgconf3_1.8.1-1 libproc2-0_2:4.0.2-3 libpsl5_0.21.0-1.2 libquadmath0_12.2.0-14 librhash0_1.4.3-3 librtmp1_2.4+20151223.gitfa8646d.1-2+b2 libsasl2-2_2.1.28+dfsg-10 libsasl2-modules-db_2.1.28+dfsg-10 libseccomp2_2.5.4-1+b2 libselinux1_3.4-1+b4 libsemanage-common_3.4-1 libsemanage2_3.4-1+b4 libsepol2_3.4-2 libsmartcols1_2.38.1-4 libsmithwaterman-dev_0.0+git20160702.2610e25-12+b1 libsmithwaterman0_0.0+git20160702.2610e25-12+b1 libss2_1.46.6~rc1-1.1 libssh2-1_1.10.0-3+b1 libssl3_3.0.7-2 libssw-dev_1.1-13 libssw0_1.1-13 libstdc++-11-dev_11.3.0-11 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-mips64el-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-mips64el-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsystemd0_252.4-1 libtabixpp-dev_1.1.2-1 libtabixpp0_1.1.2-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-1 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 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tar_1.34+dfsg-1.1 tzdata_2022g-2 ucf_3.0043 usrmerge_35 util-linux_2.38.1-4 util-linux-extra_2.38.1-4 xz-utils_5.4.1-0.0 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: libvcflib Binary: libvcflib1, libvcflib-dev, libvcflib-tools Architecture: any Version: 1.0.3+dfsg-2 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille Homepage: https://github.com/vcflib/vcflib Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/libvcflib Vcs-Git: https://salsa.debian.org/med-team/libvcflib.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cmake, markdown , libtabixpp-dev, libbz2-dev, libdisorder-dev, libsmithwaterman-dev, libssw-dev, libfastahack-dev, pkg-config, libgtest-dev , 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signature for ./libvcflib_1.0.3+dfsg-2.dsc: no acceptable signature found dpkg-source: info: extracting libvcflib in /<> dpkg-source: info: unpacking libvcflib_1.0.3+dfsg.orig.tar.xz dpkg-source: info: unpacking libvcflib_1.0.3+dfsg-2.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying no_fsom dpkg-source: info: applying use_debian_packaged_smithwaterman.patch dpkg-source: info: applying use_debian_packaged_fastahack.patch dpkg-source: info: applying use_debian_packaged_libssw.patch dpkg-source: info: applying shared_lib.patch dpkg-source: info: applying pkg-config.patch dpkg-source: info: applying tabix_linking dpkg-source: info: applying tests Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-1684a1bc-a0ee-4acb-b5a8-ac17d03beb87 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package libvcflib dpkg-buildpackage: info: source version 1.0.3+dfsg-2 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el debian/rules clean dh clean --buildsystem cmake debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean || true make[1]: Leaving directory '/<>' dh_autoreconf_clean -O--buildsystem=cmake debian/rules override_dh_clean make[1]: Entering directory '/<>' dh_clean find . -name "*.o" -delete rm -f README.html make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --buildsystem cmake dh_update_autotools_config -a -O--buildsystem=cmake dh_autoreconf -a -O--buildsystem=cmake debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON cd obj-mips64el-linux-gnuabi64 && cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=mips64 -DCMAKE_C_COMPILER=mips64el-linux-gnuabi64-gcc -DCMAKE_CXX_COMPILER=mips64el-linux-gnuabi64-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/mips64el-linux-gnuabi64-qmake -DCMAKE_INSTALL_LIBDIR=lib/mips64el-linux-gnuabi64 -DOPENMP=ON -DCMAKE_BUILD_RPATH_USE_ORIGIN=ON .. -- The C compiler identification is GNU 12.2.0 -- The CXX compiler identification is GNU 12.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/mips64el-linux-gnuabi64-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/mips64el-linux-gnuabi64-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found PkgConfig: /usr/bin/mips64el-linux-gnuabi64-pkg-config (found version "1.8.1") -- Found BZip2: /usr/lib/mips64el-linux-gnuabi64/libbz2.so (found version "1.0.8") -- Looking for BZ2_bzCompressInit -- Looking for BZ2_bzCompressInit - found -- Looking for lzma_auto_decoder in /usr/lib/mips64el-linux-gnuabi64/liblzma.so -- Looking for lzma_auto_decoder in /usr/lib/mips64el-linux-gnuabi64/liblzma.so - found -- Looking for lzma_easy_encoder in /usr/lib/mips64el-linux-gnuabi64/liblzma.so -- Looking for lzma_easy_encoder in /usr/lib/mips64el-linux-gnuabi64/liblzma.so - found -- Looking for lzma_lzma_preset in /usr/lib/mips64el-linux-gnuabi64/liblzma.so -- Looking for lzma_lzma_preset in /usr/lib/mips64el-linux-gnuabi64/liblzma.so - found -- Found LibLZMA: /usr/lib/mips64el-linux-gnuabi64/liblzma.so (found version "5.4.1") -- Found ZLIB: /usr/lib/mips64el-linux-gnuabi64/libz.so (found version "1.2.13") -- -- Performing Test CMAKE_HAVE_LIBC_PTHREAD -- Performing Test CMAKE_HAVE_LIBC_PTHREAD - Success -- Found Threads: TRUE -- Checking for module 'htslib' -- Found htslib, version 1.16 -- Checking for module 'tabixpp' -- Package 'tabixpp', required by 'virtual:world', not found -- Checking for module 'libsmithwaterman' -- Found libsmithwaterman, version 0.0 -- Checking for module 'libfastahack' -- Found libfastahack, version 0.0 -- Found OpenMP_C: -fopenmp (found version "4.5") -- Found OpenMP_CXX: -fopenmp (found version "4.5") -- Found OpenMP: TRUE (found version "4.5") Pandoc needs to be installed to generate the man pages -- Configuring done -- Generating done CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY CMAKE_INSTALL_LOCALSTATEDIR CMAKE_INSTALL_RUNSTATEDIR CMAKE_INSTALL_SYSCONFDIR FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-mips64el-linux-gnuabi64 make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build cd obj-mips64el-linux-gnuabi64 && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[2]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<> -B/<>/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-mips64el-linux-gnuabi64/CMakeFiles /<>/obj-mips64el-linux-gnuabi64//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[3]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcflib.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcflib.dir/build.make CMakeFiles/vcflib.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 0%] Building CXX object CMakeFiles/vcflib.dir/src/Variant.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/Variant.cpp.o -MF CMakeFiles/vcflib.dir/src/Variant.cpp.o.d -o CMakeFiles/vcflib.dir/src/Variant.cpp.o -c /<>/src/Variant.cpp In file included from /<>/src/Variant.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 1%] Building CXX object CMakeFiles/vcflib.dir/src/rnglib.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/rnglib.cpp.o -MF CMakeFiles/vcflib.dir/src/rnglib.cpp.o.d -o CMakeFiles/vcflib.dir/src/rnglib.cpp.o -c /<>/src/rnglib.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/var.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/var.cpp.o -MF CMakeFiles/vcflib.dir/src/var.cpp.o.d -o CMakeFiles/vcflib.dir/src/var.cpp.o -c /<>/src/var.cpp [ 2%] Building CXX object CMakeFiles/vcflib.dir/src/pdflib.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/pdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/pdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/pdflib.cpp.o -c /<>/src/pdflib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/cdflib.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/cdflib.cpp.o -MF CMakeFiles/vcflib.dir/src/cdflib.cpp.o.d -o CMakeFiles/vcflib.dir/src/cdflib.cpp.o -c /<>/src/cdflib.cpp [ 3%] Building CXX object CMakeFiles/vcflib.dir/src/split.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -fPIC -MD -MT CMakeFiles/vcflib.dir/src/split.cpp.o -MF CMakeFiles/vcflib.dir/src/split.cpp.o.d -o CMakeFiles/vcflib.dir/src/split.cpp.o -c /<>/src/split.cpp [ 4%] Building C object CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o /usr/bin/mips64el-linux-gnuabi64-gcc -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -Dvcflib_EXPORTS -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -MF CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o.d -o CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -c /<>/filevercmp/filevercmp.c [ 5%] Linking CXX shared library libvcflib.so /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflib.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -shared -Wl,-soname,libvcflib.so.1 -o libvcflib.so.1 CMakeFiles/vcflib.dir/src/Variant.cpp.o CMakeFiles/vcflib.dir/src/rnglib.cpp.o CMakeFiles/vcflib.dir/src/var.cpp.o CMakeFiles/vcflib.dir/src/pdflib.cpp.o CMakeFiles/vcflib.dir/src/cdflib.cpp.o CMakeFiles/vcflib.dir/src/split.cpp.o CMakeFiles/vcflib.dir/filevercmp/filevercmp.c.o -lssw -ltabixpp -lsmithwaterman -ldisorder -lfastahack /usr/bin/cmake -E cmake_symlink_library libvcflib.so.1 libvcflib.so.1 libvcflib.so make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 5%] Built target vcflib make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfecho.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfecho.dir/build.make CMakeFiles/vcfecho.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 6%] Building CXX object CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -MF CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o.d -o CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -c /<>/src/vcfecho.cpp In file included from /<>/src/vcfecho.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 6%] Linking CXX executable vcfecho /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfecho.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfecho.dir/src/vcfecho.cpp.o -o vcfecho -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 6%] Built target vcfecho make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/dumpContigsFromHeader.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/dumpContigsFromHeader.dir/build.make CMakeFiles/dumpContigsFromHeader.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 6%] Building CXX object CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -MF CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o.d -o CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -c /<>/src/dumpContigsFromHeader.cpp In file included from /<>/src/dumpContigsFromHeader.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 7%] Linking CXX executable dumpContigsFromHeader /usr/bin/cmake -E cmake_link_script CMakeFiles/dumpContigsFromHeader.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/dumpContigsFromHeader.dir/src/dumpContigsFromHeader.cpp.o -o dumpContigsFromHeader -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 7%] Built target dumpContigsFromHeader make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/bFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/bFst.dir/build.make CMakeFiles/bFst.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 7%] Building CXX object CMakeFiles/bFst.dir/src/bFst.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/bFst.dir/src/bFst.cpp.o -MF CMakeFiles/bFst.dir/src/bFst.cpp.o.d -o CMakeFiles/bFst.dir/src/bFst.cpp.o -c /<>/src/bFst.cpp In file included from /<>/src/bFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 8%] Linking CXX executable bFst /usr/bin/cmake -E cmake_link_script CMakeFiles/bFst.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/bFst.dir/src/bFst.cpp.o -o bFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 8%] Built target bFst make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/pVst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/pVst.dir/build.make CMakeFiles/pVst.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 8%] Building CXX object CMakeFiles/pVst.dir/src/pVst.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/pVst.dir/src/pVst.cpp.o -MF CMakeFiles/pVst.dir/src/pVst.cpp.o.d -o CMakeFiles/pVst.dir/src/pVst.cpp.o -c /<>/src/pVst.cpp In file included from /<>/src/pVst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 9%] Linking CXX executable pVst /usr/bin/cmake -E cmake_link_script CMakeFiles/pVst.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/pVst.dir/src/pVst.cpp.o -o pVst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 9%] Built target pVst make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/hapLrt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/hapLrt.dir/build.make CMakeFiles/hapLrt.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 10%] Building CXX object CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -MF CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o.d -o CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -c /<>/src/hapLrt.cpp In file included from /<>/src/hapLrt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 10%] Linking CXX executable hapLrt /usr/bin/cmake -E cmake_link_script CMakeFiles/hapLrt.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/hapLrt.dir/src/hapLrt.cpp.o -o hapLrt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 10%] Built target hapLrt make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/popStats.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/popStats.dir/build.make CMakeFiles/popStats.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 11%] Building CXX object CMakeFiles/popStats.dir/src/popStats.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/popStats.dir/src/popStats.cpp.o -MF CMakeFiles/popStats.dir/src/popStats.cpp.o.d -o CMakeFiles/popStats.dir/src/popStats.cpp.o -c /<>/src/popStats.cpp In file included from /<>/src/popStats.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 12%] Linking CXX executable popStats /usr/bin/cmake -E cmake_link_script CMakeFiles/popStats.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/popStats.dir/src/popStats.cpp.o -o popStats -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 12%] Built target popStats make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/wcFst.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/wcFst.dir/build.make CMakeFiles/wcFst.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 13%] Building CXX object CMakeFiles/wcFst.dir/src/wcFst.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/wcFst.dir/src/wcFst.cpp.o -MF CMakeFiles/wcFst.dir/src/wcFst.cpp.o.d -o CMakeFiles/wcFst.dir/src/wcFst.cpp.o -c /<>/src/wcFst.cpp In file included from /<>/src/wcFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 14%] Linking CXX executable wcFst /usr/bin/cmake -E cmake_link_script CMakeFiles/wcFst.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/wcFst.dir/src/wcFst.cpp.o -o wcFst -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 14%] Built target wcFst make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/iHS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/iHS.dir/build.make CMakeFiles/iHS.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 15%] Building CXX object CMakeFiles/iHS.dir/src/iHS.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/iHS.dir/src/iHS.cpp.o -MF CMakeFiles/iHS.dir/src/iHS.cpp.o.d -o CMakeFiles/iHS.dir/src/iHS.cpp.o -c /<>/src/iHS.cpp In file included from /<>/src/iHS.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ 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/<>/src/genotypeSummary.cpp In file included from /<>/src/genotypeSummary.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 18%] Linking CXX executable genotypeSummary /usr/bin/cmake -E cmake_link_script 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/<>/src/sequenceDiversity.cpp In file included from /<>/src/sequenceDiversity.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 19%] Linking CXX executable sequenceDiversity /usr/bin/cmake -E cmake_link_script 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make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/pFst.dir/build.make CMakeFiles/pFst.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 19%] Building CXX object CMakeFiles/pFst.dir/src/pFst.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/pFst.dir/src/pFst.cpp.o -MF CMakeFiles/pFst.dir/src/pFst.cpp.o.d -o CMakeFiles/pFst.dir/src/pFst.cpp.o -c /<>/src/pFst.cpp In file included from /<>/src/pFst.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 20%] Linking CXX executable pFst /usr/bin/cmake -E cmake_link_script CMakeFiles/pFst.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro 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/usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfld.dir/src/vcfld.cpp.o -MF CMakeFiles/vcfld.dir/src/vcfld.cpp.o.d -o CMakeFiles/vcfld.dir/src/vcfld.cpp.o -c /<>/src/vcfld.cpp In file included from /<>/src/vcfld.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 23%] Linking CXX executable vcfld /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfld.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfld.dir/src/vcfld.cpp.o -o vcfld -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 23%] Built target vcfld make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/plotHaps.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/plotHaps.dir/build.make CMakeFiles/plotHaps.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 24%] Building CXX object CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -MF CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o.d -o CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -c /<>/src/plotHaps.cpp In file included from /<>/src/plotHaps.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 24%] Linking CXX executable plotHaps /usr/bin/cmake -E cmake_link_script CMakeFiles/plotHaps.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/plotHaps.dir/src/plotHaps.cpp.o -o plotHaps -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 24%] Built target plotHaps make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/abba-baba.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/abba-baba.dir/build.make CMakeFiles/abba-baba.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 24%] Building CXX object CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -MF CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o.d -o CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o -c /<>/src/abba-baba.cpp In file included from /<>/src/abba-baba.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 25%] Linking CXX executable abba-baba /usr/bin/cmake -E cmake_link_script CMakeFiles/abba-baba.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/abba-baba.dir/src/abba-baba.cpp.o" -o abba-baba -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 25%] Built target abba-baba make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/permuteGPAT++.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/permuteGPAT++.dir/build.make CMakeFiles/permuteGPAT++.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 26%] Building CXX object CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -MF CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o.d -o CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -c /<>/src/permuteGPAT++.cpp [ 26%] Linking CXX executable permuteGPAT++ /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteGPAT++.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteGPAT++.dir/src/permuteGPAT++.cpp.o -o permuteGPAT++ -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 26%] Built target permuteGPAT++ make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/permuteSmooth.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/permuteSmooth.dir/build.make CMakeFiles/permuteSmooth.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 27%] Building CXX object CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -MF CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o.d -o CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -c /<>/src/permuteSmooth.cpp [ 27%] Linking CXX executable permuteSmooth /usr/bin/cmake -E cmake_link_script CMakeFiles/permuteSmooth.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/permuteSmooth.dir/src/permuteSmooth.cpp.o -o permuteSmooth -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 27%] Built target permuteSmooth make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/normalize-iHS.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/normalize-iHS.dir/build.make CMakeFiles/normalize-iHS.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 27%] Building CXX object CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -MF CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o.d -o CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o -c /<>/src/normalize-iHS.cpp [ 28%] Linking CXX executable normalize-iHS /usr/bin/cmake -E cmake_link_script CMakeFiles/normalize-iHS.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic "CMakeFiles/normalize-iHS.dir/src/normalize-iHS.cpp.o" -o normalize-iHS -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 28%] Built target normalize-iHS make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/meltEHH.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/meltEHH.dir/build.make CMakeFiles/meltEHH.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 29%] Building CXX object CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -MF CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o.d -o CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -c /<>/src/meltEHH.cpp In file included from /<>/src/meltEHH.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 30%] Linking CXX executable meltEHH /usr/bin/cmake -E cmake_link_script CMakeFiles/meltEHH.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/meltEHH.dir/src/meltEHH.cpp.o -o meltEHH -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 30%] Built target meltEHH make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfaltcount.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfaltcount.dir/build.make CMakeFiles/vcfaltcount.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 31%] Building CXX object CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -MF CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o.d -o CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -c /<>/src/vcfaltcount.cpp In file included from /<>/src/vcfaltcount.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 31%] Linking CXX executable vcfaltcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaltcount.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaltcount.dir/src/vcfaltcount.cpp.o -o vcfaltcount -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 31%] Built target vcfaltcount make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfhetcount.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfhetcount.dir/build.make CMakeFiles/vcfhetcount.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 32%] Building CXX object CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -MF CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o.d -o CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -c /<>/src/vcfhetcount.cpp In file included from /<>/src/vcfhetcount.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 32%] Linking CXX executable vcfhetcount /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhetcount.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhetcount.dir/src/vcfhetcount.cpp.o -o vcfhetcount -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 32%] Built target vcfhetcount make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfhethomratio.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfhethomratio.dir/build.make CMakeFiles/vcfhethomratio.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 33%] Building CXX object CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -MF CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o.d -o CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -c /<>/src/vcfhethomratio.cpp In file included from /<>/src/vcfhethomratio.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 33%] Linking CXX executable vcfhethomratio /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfhethomratio.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfhethomratio.dir/src/vcfhethomratio.cpp.o -o vcfhethomratio -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 33%] Built target vcfhethomratio make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcffilter.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcffilter.dir/build.make CMakeFiles/vcffilter.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 34%] Building CXX object CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -MF CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o.d -o CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -c /<>/src/vcffilter.cpp In file included from /<>/src/vcffilter.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 35%] Linking CXX executable vcffilter /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffilter.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffilter.dir/src/vcffilter.cpp.o -o vcffilter -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 35%] Built target vcffilter make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcf2tsv.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcf2tsv.dir/build.make CMakeFiles/vcf2tsv.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 36%] Building CXX object CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -MF CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o.d -o CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -c /<>/src/vcf2tsv.cpp In file included from /<>/src/vcf2tsv.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 37%] Linking CXX executable vcf2tsv /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2tsv.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2tsv.dir/src/vcf2tsv.cpp.o -o vcf2tsv -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 37%] Built target vcf2tsv make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgenotypes.dir/build.make CMakeFiles/vcfgenotypes.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 37%] Building CXX object CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -MF CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o.d -o CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -c /<>/src/vcfgenotypes.cpp In file included from /<>/src/vcfgenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 38%] Linking CXX executable vcfgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypes.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypes.dir/src/vcfgenotypes.cpp.o -o vcfgenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 38%] Built target vcfgenotypes make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfannotategenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfannotategenotypes.dir/build.make CMakeFiles/vcfannotategenotypes.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 39%] Building CXX object CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -MF CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o.d -o CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -c /<>/src/vcfannotategenotypes.cpp In file included from /<>/src/vcfannotategenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 40%] Linking CXX executable vcfannotategenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotategenotypes.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotategenotypes.dir/src/vcfannotategenotypes.cpp.o -o vcfannotategenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 40%] Built target vcfannotategenotypes make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcommonsamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcommonsamples.dir/build.make CMakeFiles/vcfcommonsamples.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 41%] Building CXX object CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -MF CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o.d -o CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -c /<>/src/vcfcommonsamples.cpp In file included from /<>/src/vcfcommonsamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 42%] Linking CXX executable vcfcommonsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcommonsamples.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcommonsamples.dir/src/vcfcommonsamples.cpp.o -o vcfcommonsamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 42%] Built target vcfcommonsamples make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfremovesamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfremovesamples.dir/build.make CMakeFiles/vcfremovesamples.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 42%] Building CXX object CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -MF CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o.d -o CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -c /<>/src/vcfremovesamples.cpp In file included from /<>/src/vcfremovesamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 43%] Linking CXX executable vcfremovesamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremovesamples.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremovesamples.dir/src/vcfremovesamples.cpp.o -o vcfremovesamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 43%] Built target vcfremovesamples make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfkeepsamples.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfkeepsamples.dir/build.make CMakeFiles/vcfkeepsamples.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 44%] Building CXX object CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -MF CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o.d -o CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -c /<>/src/vcfkeepsamples.cpp In file included from /<>/src/vcfkeepsamples.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 44%] Linking CXX executable vcfkeepsamples /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepsamples.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepsamples.dir/src/vcfkeepsamples.cpp.o -o vcfkeepsamples -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 44%] Built target vcfkeepsamples make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfsamplenames.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfsamplenames.dir/build.make CMakeFiles/vcfsamplenames.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 45%] Building CXX object CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -MF CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o.d -o CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -c /<>/src/vcfsamplenames.cpp In file included from /<>/src/vcfsamplenames.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 46%] Linking CXX executable vcfsamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplenames.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplenames.dir/src/vcfsamplenames.cpp.o -o vcfsamplenames -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 46%] Built target vcfsamplenames make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgenotypecompare.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgenotypecompare.dir/build.make CMakeFiles/vcfgenotypecompare.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 46%] Building CXX object CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -MF CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o.d -o CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -c /<>/src/vcfgenotypecompare.cpp In file included from /<>/src/vcfgenotypecompare.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 47%] Linking CXX executable vcfgenotypecompare /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenotypecompare.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenotypecompare.dir/src/vcfgenotypecompare.cpp.o -o vcfgenotypecompare -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 47%] Built target vcfgenotypecompare make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcffixup.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcffixup.dir/build.make CMakeFiles/vcffixup.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 47%] Building CXX object CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -MF CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o.d -o CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -c /<>/src/vcffixup.cpp In file included from /<>/src/vcffixup.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 48%] Linking CXX executable vcffixup /usr/bin/cmake -E cmake_link_script CMakeFiles/vcffixup.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcffixup.dir/src/vcffixup.cpp.o -o vcffixup -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 48%] Built target vcffixup make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfclassify.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfclassify.dir/build.make CMakeFiles/vcfclassify.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 49%] Building CXX object CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -MF CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o.d -o CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -c /<>/src/vcfclassify.cpp In file included from /<>/src/vcfclassify.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 49%] Linking CXX executable vcfclassify /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfclassify.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfclassify.dir/src/vcfclassify.cpp.o -o vcfclassify -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 49%] Built target vcfclassify make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfsamplediff.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfsamplediff.dir/build.make CMakeFiles/vcfsamplediff.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 50%] Building CXX object CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -MF CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o.d -o CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -c /<>/src/vcfsamplediff.cpp In file included from /<>/src/vcfsamplediff.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 50%] Linking CXX executable vcfsamplediff /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsamplediff.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsamplediff.dir/src/vcfsamplediff.cpp.o -o vcfsamplediff -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 50%] Built target vcfsamplediff make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfremoveaberrantgenotypes.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfremoveaberrantgenotypes.dir/build.make CMakeFiles/vcfremoveaberrantgenotypes.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 50%] Building CXX object CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -MF CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o.d -o CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -c /<>/src/vcfremoveaberrantgenotypes.cpp In file included from /<>/src/vcfremoveaberrantgenotypes.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 51%] Linking CXX executable vcfremoveaberrantgenotypes /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremoveaberrantgenotypes.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremoveaberrantgenotypes.dir/src/vcfremoveaberrantgenotypes.cpp.o -o vcfremoveaberrantgenotypes -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 51%] Built target vcfremoveaberrantgenotypes make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfrandom.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfrandom.dir/build.make CMakeFiles/vcfrandom.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 52%] Building CXX object CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -MF CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o.d -o CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -c /<>/src/vcfrandom.cpp In file included from /<>/src/vcfrandom.cpp:13: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/string:48, from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/locale_classes.h:40, from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/ios_base.h:41, from /usr/mips64el-linux-gnuabi64/include/c++/12/ios:42, from /usr/mips64el-linux-gnuabi64/include/c++/12/istream:38, from /usr/mips64el-linux-gnuabi64/include/c++/12/sstream:38, from /<>/src/vcfrandom.cpp:10: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 52%] Linking CXX executable vcfrandom /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandom.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandom.dir/src/vcfrandom.cpp.o -o vcfrandom -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 52%] Built target vcfrandom make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfparsealts.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfparsealts.dir/build.make CMakeFiles/vcfparsealts.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 52%] Building CXX object CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -MF CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o.d -o CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -c /<>/src/vcfparsealts.cpp In file included from /<>/src/vcfparsealts.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 53%] Linking CXX executable vcfparsealts /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfparsealts.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfparsealts.dir/src/vcfparsealts.cpp.o -o vcfparsealts -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 53%] Built target vcfparsealts make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfstats.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfstats.dir/build.make CMakeFiles/vcfstats.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 53%] Building CXX object CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -MF CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o.d -o CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -c /<>/src/vcfstats.cpp In file included from /<>/src/vcfstats.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 54%] Linking CXX executable vcfstats /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstats.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstats.dir/src/vcfstats.cpp.o -o vcfstats -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 54%] Built target vcfstats make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfflatten.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfflatten.dir/build.make CMakeFiles/vcfflatten.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 54%] Building CXX object CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -MF CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o.d -o CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -c /<>/src/vcfflatten.cpp In file included from /<>/src/vcfflatten.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 55%] Linking CXX executable vcfflatten /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfflatten.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfflatten.dir/src/vcfflatten.cpp.o -o vcfflatten -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 55%] Built target vcfflatten make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfprimers.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfprimers.dir/build.make CMakeFiles/vcfprimers.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 56%] Building CXX object CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -MF CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o.d -o CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -c /<>/src/vcfprimers.cpp In file included from /<>/src/vcfprimers.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 56%] Linking CXX executable vcfprimers /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfprimers.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfprimers.dir/src/vcfprimers.cpp.o -o vcfprimers -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 56%] Built target vcfprimers make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfnumalt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfnumalt.dir/build.make CMakeFiles/vcfnumalt.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 56%] Building CXX object CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -MF CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o.d -o CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -c /<>/src/vcfnumalt.cpp In file included from /<>/src/vcfnumalt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 57%] Linking CXX executable vcfnumalt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfnumalt.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfnumalt.dir/src/vcfnumalt.cpp.o -o vcfnumalt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 57%] Built target vcfnumalt make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcleancomplex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcleancomplex.dir/build.make CMakeFiles/vcfcleancomplex.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 58%] Building CXX object CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -MF CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o.d -o CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -c /<>/src/vcfcleancomplex.cpp In file included from /<>/src/vcfcleancomplex.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 58%] Linking CXX executable vcfcleancomplex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcleancomplex.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcleancomplex.dir/src/vcfcleancomplex.cpp.o -o vcfcleancomplex -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 58%] Built target vcfcleancomplex make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfintersect.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfintersect.dir/build.make CMakeFiles/vcfintersect.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 58%] Building CXX object CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -MF CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o.d -o CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -c /<>/src/vcfintersect.cpp In file included from /<>/src/vcfintersect.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 59%] Linking CXX executable vcfintersect /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfintersect.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfintersect.dir/src/vcfintersect.cpp.o -o vcfintersect -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 59%] Built target vcfintersect make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfannotate.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfannotate.dir/build.make CMakeFiles/vcfannotate.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 60%] Building CXX object CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -MF CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o.d -o CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -c /<>/src/vcfannotate.cpp In file included from /<>/src/vcfannotate.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 60%] Linking CXX executable vcfannotate /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfannotate.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfannotate.dir/src/vcfannotate.cpp.o -o vcfannotate -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 60%] Built target vcfannotate make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfallelicprimitives.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfallelicprimitives.dir/build.make CMakeFiles/vcfallelicprimitives.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 61%] Building CXX object CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -MF CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o.d -o CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -c /<>/src/vcfallelicprimitives.cpp In file included from /<>/src/vcfallelicprimitives.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 61%] Linking CXX executable vcfallelicprimitives /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfallelicprimitives.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfallelicprimitives.dir/src/vcfallelicprimitives.cpp.o -o vcfallelicprimitives -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 61%] Built target vcfallelicprimitives make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfoverlay.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfoverlay.dir/build.make CMakeFiles/vcfoverlay.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 61%] Building CXX object CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -MF CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o.d -o CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -c /<>/src/vcfoverlay.cpp In file included from /<>/src/vcfoverlay.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 62%] Linking CXX executable vcfoverlay /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfoverlay.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfoverlay.dir/src/vcfoverlay.cpp.o -o vcfoverlay -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 62%] Built target vcfoverlay make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfaddinfo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfaddinfo.dir/build.make CMakeFiles/vcfaddinfo.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 62%] Building CXX object CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -MF CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o.d -o CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -c /<>/src/vcfaddinfo.cpp In file included from /<>/src/vcfaddinfo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 63%] Linking CXX executable vcfaddinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfaddinfo.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfaddinfo.dir/src/vcfaddinfo.cpp.o -o vcfaddinfo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 63%] Built target vcfaddinfo make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfkeepinfo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfkeepinfo.dir/build.make CMakeFiles/vcfkeepinfo.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 64%] Building CXX object CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -MF CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o.d -o CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -c /<>/src/vcfkeepinfo.cpp In file included from /<>/src/vcfkeepinfo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 64%] Linking CXX executable vcfkeepinfo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepinfo.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepinfo.dir/src/vcfkeepinfo.cpp.o -o vcfkeepinfo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 64%] Built target vcfkeepinfo make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfkeepgeno.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfkeepgeno.dir/build.make CMakeFiles/vcfkeepgeno.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 65%] Building CXX object CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -MF CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o.d -o CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -c /<>/src/vcfkeepgeno.cpp In file included from /<>/src/vcfkeepgeno.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Linking CXX executable vcfkeepgeno /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfkeepgeno.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfkeepgeno.dir/src/vcfkeepgeno.cpp.o -o vcfkeepgeno -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 65%] Built target vcfkeepgeno make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfafpath.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfafpath.dir/build.make CMakeFiles/vcfafpath.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 65%] Building CXX object CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -MF CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o.d -o CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -c /<>/src/vcfafpath.cpp In file included from /<>/src/vcfafpath.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 66%] Linking CXX executable vcfafpath /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfafpath.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfafpath.dir/src/vcfafpath.cpp.o -o vcfafpath -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 66%] Built target vcfafpath make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcountalleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcountalleles.dir/build.make CMakeFiles/vcfcountalleles.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 66%] Building CXX object CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -MF CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o.d -o CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -c /<>/src/vcfcountalleles.cpp In file included from /<>/src/vcfcountalleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 67%] Linking CXX executable vcfcountalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcountalleles.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcountalleles.dir/src/vcfcountalleles.cpp.o -o vcfcountalleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 67%] Built target vcfcountalleles make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcflength.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcflength.dir/build.make CMakeFiles/vcflength.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 67%] Building CXX object CMakeFiles/vcflength.dir/src/vcflength.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcflength.dir/src/vcflength.cpp.o -MF CMakeFiles/vcflength.dir/src/vcflength.cpp.o.d -o CMakeFiles/vcflength.dir/src/vcflength.cpp.o -c /<>/src/vcflength.cpp In file included from /<>/src/vcflength.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Linking CXX executable vcflength /usr/bin/cmake -E cmake_link_script CMakeFiles/vcflength.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcflength.dir/src/vcflength.cpp.o -o vcflength -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 68%] Built target vcflength make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfdistance.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfdistance.dir/build.make CMakeFiles/vcfdistance.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 68%] Building CXX object CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -MF CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o.d -o CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -c /<>/src/vcfdistance.cpp In file included from /<>/src/vcfdistance.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 69%] Linking CXX executable vcfdistance /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfdistance.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfdistance.dir/src/vcfdistance.cpp.o -o vcfdistance -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 69%] Built target vcfdistance make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfrandomsample.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfrandomsample.dir/build.make CMakeFiles/vcfrandomsample.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 70%] Building CXX object CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -MF CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o.d -o CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -c /<>/src/vcfrandomsample.cpp In file included from /<>/src/vcfrandomsample.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Linking CXX executable vcfrandomsample /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfrandomsample.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfrandomsample.dir/src/vcfrandomsample.cpp.o -o vcfrandomsample -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 71%] Built target vcfrandomsample make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfentropy.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfentropy.dir/build.make CMakeFiles/vcfentropy.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 72%] Building CXX object CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -MF CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o.d -o CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -c /<>/src/vcfentropy.cpp In file included from /<>/src/vcfentropy.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 72%] Linking CXX executable vcfentropy /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfentropy.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfentropy.dir/src/vcfentropy.cpp.o -o vcfentropy -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 72%] Built target vcfentropy make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfglxgt.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfglxgt.dir/build.make CMakeFiles/vcfglxgt.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 73%] Building CXX object CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -MF CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o.d -o CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -c /<>/src/vcfglxgt.cpp In file included from /<>/src/vcfglxgt.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 73%] Linking CXX executable vcfglxgt /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglxgt.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfglxgt.dir/src/vcfglxgt.cpp.o -o vcfglxgt -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 73%] Built target vcfglxgt make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfroc.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfroc.dir/build.make CMakeFiles/vcfroc.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 74%] Building CXX object CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -MF CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o.d -o CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -c /<>/src/vcfroc.cpp In file included from /<>/src/vcfroc.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 74%] Linking CXX executable vcfroc /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfroc.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfroc.dir/src/vcfroc.cpp.o -o vcfroc -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 74%] Built target vcfroc make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcheck.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcheck.dir/build.make CMakeFiles/vcfcheck.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 74%] Building CXX object CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -MF CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o.d -o CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -c /<>/src/vcfcheck.cpp In file included from /<>/src/vcfcheck.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Linking CXX executable vcfcheck /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcheck.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcheck.dir/src/vcfcheck.cpp.o -o vcfcheck -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 75%] Built target vcfcheck make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfstreamsort.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfstreamsort.dir/build.make CMakeFiles/vcfstreamsort.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 75%] Building CXX object CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -MF CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o.d -o CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -c /<>/src/vcfstreamsort.cpp In file included from /<>/src/vcfstreamsort.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 76%] Linking CXX executable vcfstreamsort /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfstreamsort.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfstreamsort.dir/src/vcfstreamsort.cpp.o -o vcfstreamsort -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 76%] Built target vcfstreamsort make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfuniq.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfuniq.dir/build.make CMakeFiles/vcfuniq.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 77%] Building CXX object CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -MF CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o.d -o CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -c /<>/src/vcfuniq.cpp In file included from /<>/src/vcfuniq.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 77%] Linking CXX executable vcfuniq /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniq.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniq.dir/src/vcfuniq.cpp.o -o vcfuniq -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 77%] Built target vcfuniq make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfuniqalleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfuniqalleles.dir/build.make CMakeFiles/vcfuniqalleles.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 78%] Building CXX object CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -MF CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o.d -o CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -c /<>/src/vcfuniqalleles.cpp In file included from /<>/src/vcfuniqalleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Linking CXX executable vcfuniqalleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfuniqalleles.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfuniqalleles.dir/src/vcfuniqalleles.cpp.o -o vcfuniqalleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 78%] Built target vcfuniqalleles make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfremap.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfremap.dir/build.make CMakeFiles/vcfremap.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 78%] Building CXX object CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -MF CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o.d -o CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -c /<>/src/vcfremap.cpp In file included from /<>/src/vcfremap.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 79%] Linking CXX executable vcfremap /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfremap.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfremap.dir/src/vcfremap.cpp.o -o vcfremap -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 79%] Built target vcfremap make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcf2fasta.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcf2fasta.dir/build.make CMakeFiles/vcf2fasta.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 80%] Building CXX object CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -MF CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o.d -o CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -c /<>/src/vcf2fasta.cpp In file included from /<>/src/vcf2fasta.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 80%] Linking CXX executable vcf2fasta /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2fasta.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2fasta.dir/src/vcf2fasta.cpp.o -o vcf2fasta -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 80%] Built target vcf2fasta make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfsitesummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfsitesummarize.dir/build.make CMakeFiles/vcfsitesummarize.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 80%] Building CXX object CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -MF CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o.d -o CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -c /<>/src/vcfsitesummarize.cpp In file included from /<>/src/vcfsitesummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Linking CXX executable vcfsitesummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsitesummarize.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsitesummarize.dir/src/vcfsitesummarize.cpp.o -o vcfsitesummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 81%] Built target vcfsitesummarize make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfbreakmulti.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfbreakmulti.dir/build.make CMakeFiles/vcfbreakmulti.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 81%] Building CXX object CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -MF CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o.d -o CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -c /<>/src/vcfbreakmulti.cpp In file included from /<>/src/vcfbreakmulti.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 82%] Linking CXX executable vcfbreakmulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfbreakmulti.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfbreakmulti.dir/src/vcfbreakmulti.cpp.o -o vcfbreakmulti -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 82%] Built target vcfbreakmulti make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcreatemulti.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcreatemulti.dir/build.make CMakeFiles/vcfcreatemulti.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 82%] Building CXX object CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -MF CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o.d -o CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -c /<>/src/vcfcreatemulti.cpp In file included from /<>/src/vcfcreatemulti.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 83%] Linking CXX executable vcfcreatemulti /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcreatemulti.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcreatemulti.dir/src/vcfcreatemulti.cpp.o -o vcfcreatemulti -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 83%] Built target vcfcreatemulti make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfevenregions.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfevenregions.dir/build.make CMakeFiles/vcfevenregions.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 84%] Building CXX object CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -MF CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o.d -o CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -c /<>/src/vcfevenregions.cpp In file included from /<>/src/vcfevenregions.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Linking CXX executable vcfevenregions /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfevenregions.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfevenregions.dir/src/vcfevenregions.cpp.o -o vcfevenregions -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 84%] Built target vcfevenregions make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcat.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcat.dir/build.make CMakeFiles/vcfcat.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 84%] Building CXX object CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -MF CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o.d -o CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -c /<>/src/vcfcat.cpp In file included from /<>/src/vcfcat.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 85%] Linking CXX executable vcfcat /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcat.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcat.dir/src/vcfcat.cpp.o -o vcfcat -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 85%] Built target vcfcat make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgenosummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgenosummarize.dir/build.make CMakeFiles/vcfgenosummarize.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 86%] Building CXX object CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -MF CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o.d -o CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -c /<>/src/vcfgenosummarize.cpp In file included from /<>/src/vcfgenosummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Linking CXX executable vcfgenosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosummarize.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosummarize.dir/src/vcfgenosummarize.cpp.o -o vcfgenosummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 87%] Built target vcfgenosummarize make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgenosamplenames.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgenosamplenames.dir/build.make CMakeFiles/vcfgenosamplenames.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 88%] Building CXX object CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -MF CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o.d -o CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -c /<>/src/vcfgenosamplenames.cpp In file included from /<>/src/vcfgenosamplenames.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 88%] Linking CXX executable vcfgenosamplenames /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgenosamplenames.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgenosamplenames.dir/src/vcfgenosamplenames.cpp.o -o vcfgenosamplenames -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 88%] Built target vcfgenosamplenames make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgeno2haplo.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgeno2haplo.dir/build.make CMakeFiles/vcfgeno2haplo.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 89%] Building CXX object CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -MF CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o.d -o CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -c /<>/src/vcfgeno2haplo.cpp In file included from /<>/src/vcfgeno2haplo.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 89%] Linking CXX executable vcfgeno2haplo /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2haplo.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2haplo.dir/src/vcfgeno2haplo.cpp.o -o vcfgeno2haplo -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 89%] Built target vcfgeno2haplo make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfleftalign.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfleftalign.dir/build.make CMakeFiles/vcfleftalign.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 89%] Building CXX object CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -MF CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o.d -o CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -c /<>/src/vcfleftalign.cpp In file included from /<>/src/vcfleftalign.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 90%] Linking CXX executable vcfleftalign /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfleftalign.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfleftalign.dir/src/vcfleftalign.cpp.o -o vcfleftalign -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 90%] Built target vcfleftalign make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfcombine.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfcombine.dir/build.make CMakeFiles/vcfcombine.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 91%] Building CXX object CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -MF CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o.d -o CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -c /<>/src/vcfcombine.cpp In file included from /<>/src/vcfcombine.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 91%] Linking CXX executable vcfcombine /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfcombine.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfcombine.dir/src/vcfcombine.cpp.o -o vcfcombine -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 91%] Built target vcfcombine make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfgeno2alleles.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfgeno2alleles.dir/build.make CMakeFiles/vcfgeno2alleles.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 92%] Building CXX object CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -MF CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o.d -o CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -c /<>/src/vcfgeno2alleles.cpp In file included from /<>/src/vcfgeno2alleles.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 92%] Linking CXX executable vcfgeno2alleles /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfgeno2alleles.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfgeno2alleles.dir/src/vcfgeno2alleles.cpp.o -o vcfgeno2alleles -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 92%] Built target vcfgeno2alleles make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfindex.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfindex.dir/build.make CMakeFiles/vcfindex.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 93%] Building CXX object CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -MF CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o.d -o CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -c /<>/src/vcfindex.cpp In file included from /<>/src/vcfindex.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 94%] Linking CXX executable vcfindex /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfindex.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfindex.dir/src/vcfindex.cpp.o -o vcfindex -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 94%] Built target vcfindex make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcf2dag.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcf2dag.dir/build.make CMakeFiles/vcf2dag.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 95%] Building CXX object CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -MF CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o.d -o CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -c /<>/src/vcf2dag.cpp In file included from /<>/src/vcf2dag.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 95%] Linking CXX executable vcf2dag /usr/bin/cmake -E cmake_link_script CMakeFiles/vcf2dag.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcf2dag.dir/src/vcf2dag.cpp.o -o vcf2dag -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 95%] Built target vcf2dag make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfsample2info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfsample2info.dir/build.make CMakeFiles/vcfsample2info.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 96%] Building CXX object CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -MF CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o.d -o CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -c /<>/src/vcfsample2info.cpp In file included from /<>/src/vcfsample2info.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 96%] Linking CXX executable vcfsample2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfsample2info.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfsample2info.dir/src/vcfsample2info.cpp.o -o vcfsample2info -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 96%] Built target vcfsample2info make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfqual2info.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfqual2info.dir/build.make CMakeFiles/vcfqual2info.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 97%] Building CXX object CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -MF CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o.d -o CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -c /<>/src/vcfqual2info.cpp In file included from /<>/src/vcfqual2info.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 97%] Linking CXX executable vcfqual2info /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfqual2info.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfqual2info.dir/src/vcfqual2info.cpp.o -o vcfqual2info -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 97%] Built target vcfqual2info make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfinfo2qual.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfinfo2qual.dir/build.make CMakeFiles/vcfinfo2qual.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 97%] Building CXX object CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -MF CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o.d -o CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -c /<>/src/vcfinfo2qual.cpp In file included from /<>/src/vcfinfo2qual.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 98%] Linking CXX executable vcfinfo2qual /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfo2qual.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfo2qual.dir/src/vcfinfo2qual.cpp.o -o vcfinfo2qual -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 98%] Built target vcfinfo2qual make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfglbound.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfglbound.dir/build.make CMakeFiles/vcfglbound.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 98%] Building CXX object CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -MF CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o.d -o CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -c /<>/src/vcfglbound.cpp In file included from /<>/src/vcfglbound.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 99%] Linking CXX executable vcfglbound /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfglbound.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfglbound.dir/src/vcfglbound.cpp.o -o vcfglbound -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [ 99%] Built target vcfglbound make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/depend make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' cd /<>/obj-mips64el-linux-gnuabi64 && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64 /<>/obj-mips64el-linux-gnuabi64/CMakeFiles/vcfinfosummarize.dir/DependInfo.cmake --color= make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' make -f CMakeFiles/vcfinfosummarize.dir/build.make CMakeFiles/vcfinfosummarize.dir/build make[4]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' [ 99%] Building CXX object CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o /usr/bin/mips64el-linux-gnuabi64-g++ -DVCFLIB_VERSION=\"1.0.3\" -DVERSION=\"1.0.3\" -I/<>/include -I/<>/intervaltree -I/<>/multichoose -I/<>/filevercmp -isystem /usr/include/smithwaterman -isystem /usr/include/fastahack -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -MD -MT CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -MF CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o.d -o CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -c /<>/src/vcfinfosummarize.cpp In file included from /<>/src/vcfinfosummarize.cpp:10: /<>/src/Variant.h:651:28: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 651 | struct stringcasecmp : binary_function { | ^~~~~~~~~~~~~~~ In file included from /usr/mips64el-linux-gnuabi64/include/c++/12/bits/refwrap.h:39, from /usr/mips64el-linux-gnuabi64/include/c++/12/vector:66, from /<>/src/Variant.h:13: /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/Variant.h:652:42: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 652 | struct charcasecmp : public std::binary_function { | ^~~~~~~~~~~~~~~ /usr/mips64el-linux-gnuabi64/include/c++/12/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [100%] Linking CXX executable vcfinfosummarize /usr/bin/cmake -E cmake_link_script CMakeFiles/vcfinfosummarize.dir/link.txt --verbose=1 /usr/bin/mips64el-linux-gnuabi64-g++ -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -std=c++0x -D_FILE_OFFSET_BITS=64 -Isrc -O3 -fopenmp -Wl,-z,relro -Wl,-z,now -rdynamic CMakeFiles/vcfinfosummarize.dir/src/vcfinfosummarize.cpp.o -o vcfinfosummarize -Wl,-rpath,"\$ORIGIN:" libvcflib.so.1 -ltabixpp -DGIT_VERSION=0.9.0 -lhts -lz -llzma -lbz2 -lsmithwaterman -ldisorder -lfastahack -lssw -ltabixpp make[4]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' [100%] Built target vcfinfosummarize make[3]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -E cmake_progress_start /<>/obj-mips64el-linux-gnuabi64/CMakeFiles 0 make[2]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' markdown README.md > README.html make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp dh_testroot -a -O--buildsystem=cmake dh_prep -a -O--buildsystem=cmake dh_auto_install -a -O--buildsystem=cmake cd obj-mips64el-linux-gnuabi64 && make -j1 install DESTDIR=/<>/libvcflib-1.0.3\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' /usr/bin/cmake -S/<> -B/<>/obj-mips64el-linux-gnuabi64 --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-mips64el-linux-gnuabi64' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/bin/vcfecho -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfecho" to "" -- Installing: /<>/debian/tmp/usr/bin/dumpContigsFromHeader -- Set runtime path of "/<>/debian/tmp/usr/bin/dumpContigsFromHeader" to "" -- Installing: /<>/debian/tmp/usr/bin/bFst -- Set runtime path of "/<>/debian/tmp/usr/bin/bFst" to "" -- Installing: /<>/debian/tmp/usr/bin/pVst -- Set runtime path of "/<>/debian/tmp/usr/bin/pVst" to "" -- Installing: /<>/debian/tmp/usr/bin/hapLrt -- Set runtime path of "/<>/debian/tmp/usr/bin/hapLrt" to "" -- Installing: /<>/debian/tmp/usr/bin/popStats -- Set runtime path of "/<>/debian/tmp/usr/bin/popStats" to "" -- Installing: /<>/debian/tmp/usr/bin/wcFst -- Set runtime path of "/<>/debian/tmp/usr/bin/wcFst" to "" -- Installing: /<>/debian/tmp/usr/bin/iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentFst -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentFst" to "" -- Installing: /<>/debian/tmp/usr/bin/segmentIhs -- Set runtime path of "/<>/debian/tmp/usr/bin/segmentIhs" to "" -- Installing: /<>/debian/tmp/usr/bin/genotypeSummary -- Set runtime path of "/<>/debian/tmp/usr/bin/genotypeSummary" to "" -- Installing: /<>/debian/tmp/usr/bin/sequenceDiversity -- Set runtime path of "/<>/debian/tmp/usr/bin/sequenceDiversity" to "" -- Installing: /<>/debian/tmp/usr/bin/pFst -- Set runtime path of "/<>/debian/tmp/usr/bin/pFst" to "" -- Installing: /<>/debian/tmp/usr/bin/smoother -- Set runtime path of "/<>/debian/tmp/usr/bin/smoother" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfld -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfld" to "" -- Installing: /<>/debian/tmp/usr/bin/plotHaps -- Set runtime path of "/<>/debian/tmp/usr/bin/plotHaps" to "" -- Installing: /<>/debian/tmp/usr/bin/abba-baba -- Set runtime path of "/<>/debian/tmp/usr/bin/abba-baba" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteGPAT++ -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteGPAT++" to "" -- Installing: /<>/debian/tmp/usr/bin/permuteSmooth -- Set runtime path of "/<>/debian/tmp/usr/bin/permuteSmooth" to "" -- Installing: /<>/debian/tmp/usr/bin/normalize-iHS -- Set runtime path of "/<>/debian/tmp/usr/bin/normalize-iHS" to "" -- Installing: /<>/debian/tmp/usr/bin/meltEHH -- Set runtime path of "/<>/debian/tmp/usr/bin/meltEHH" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaltcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaltcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhetcount -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhetcount" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfhethomratio -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfhethomratio" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffilter -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffilter" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2tsv -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2tsv" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotategenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotategenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcommonsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcommonsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremovesamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremovesamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepsamples -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepsamples" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenotypecompare -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenotypecompare" to "" -- Installing: /<>/debian/tmp/usr/bin/vcffixup -- Set runtime path of "/<>/debian/tmp/usr/bin/vcffixup" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfclassify -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfclassify" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsamplediff -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsamplediff" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremoveaberrantgenotypes" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandom -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandom" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfparsealts -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfparsealts" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstats -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstats" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfflatten -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfflatten" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfprimers -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfprimers" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfnumalt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfnumalt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcleancomplex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcleancomplex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfintersect -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfintersect" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfannotate -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfannotate" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfallelicprimitives -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfallelicprimitives" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfoverlay -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfoverlay" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfaddinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfaddinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepinfo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepinfo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfkeepgeno -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfkeepgeno" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfafpath -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfafpath" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcountalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcountalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcflength -- Set runtime path of "/<>/debian/tmp/usr/bin/vcflength" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfdistance -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfdistance" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfrandomsample -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfrandomsample" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfentropy -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfentropy" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglxgt -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglxgt" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfroc -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfroc" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcheck -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcheck" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfstreamsort -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfstreamsort" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniq -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniq" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfuniqalleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfuniqalleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfremap -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfremap" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2fasta -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2fasta" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsitesummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsitesummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfbreakmulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfbreakmulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcreatemulti -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcreatemulti" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfevenregions -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfevenregions" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcat -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcat" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgenosamplenames -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgenosamplenames" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2haplo -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2haplo" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfleftalign -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfleftalign" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfcombine -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfcombine" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfgeno2alleles -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfgeno2alleles" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfindex -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfindex" to "" -- Installing: /<>/debian/tmp/usr/bin/vcf2dag -- Set runtime path of "/<>/debian/tmp/usr/bin/vcf2dag" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfsample2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfsample2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfqual2info -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfqual2info" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfo2qual -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfo2qual" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfglbound -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfglbound" to "" -- Installing: /<>/debian/tmp/usr/bin/vcfinfosummarize -- Set runtime path of "/<>/debian/tmp/usr/bin/vcfinfosummarize" to "" -- Installing: /<>/debian/tmp/usr/bin/bed2region -- Installing: /<>/debian/tmp/usr/bin/bgziptabix -- Installing: /<>/debian/tmp/usr/bin/vcf2bed.py -- Installing: /<>/debian/tmp/usr/bin/vcf2sqlite.py -- Installing: /<>/debian/tmp/usr/bin/vcfbiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfclearid -- Installing: /<>/debian/tmp/usr/bin/vcfclearinfo -- Installing: /<>/debian/tmp/usr/bin/vcfcomplex -- Installing: /<>/debian/tmp/usr/bin/vcffirstheader -- Installing: /<>/debian/tmp/usr/bin/vcfgtcompare.sh -- Installing: /<>/debian/tmp/usr/bin/vcfindelproximity -- Installing: /<>/debian/tmp/usr/bin/vcfindels -- Installing: /<>/debian/tmp/usr/bin/vcfjoincalls -- Installing: /<>/debian/tmp/usr/bin/vcfmultiallelic -- Installing: /<>/debian/tmp/usr/bin/vcfmultiway -- Installing: /<>/debian/tmp/usr/bin/vcfmultiwayscripts -- Installing: /<>/debian/tmp/usr/bin/vcfnobiallelicsnps -- Installing: /<>/debian/tmp/usr/bin/vcfnoindels -- Installing: /<>/debian/tmp/usr/bin/vcfnosnps -- Installing: /<>/debian/tmp/usr/bin/vcfnulldotslashdot -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplotaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfplotsitediscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfplottstv.sh -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.r -- Installing: /<>/debian/tmp/usr/bin/vcfprintaltdiscrepancy.sh -- Installing: /<>/debian/tmp/usr/bin/vcfqualfilter -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_and_cut -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_pipe -- Installing: /<>/debian/tmp/usr/bin/vcfregionreduce_uncompressed -- Installing: /<>/debian/tmp/usr/bin/vcfremovenonATGC -- Installing: /<>/debian/tmp/usr/bin/vcfsnps -- Installing: /<>/debian/tmp/usr/bin/vcfsort -- Installing: /<>/debian/tmp/usr/bin/vcf_strip_extra_headers -- Installing: /<>/debian/tmp/usr/bin/vcfvarstats -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libvcflib.so.1 -- Installing: /<>/debian/tmp/usr/lib/mips64el-linux-gnuabi64/libvcflib.so -- Installing: /<>/debian/tmp/usr/include/filevercmp.h -- Installing: /<>/debian/tmp/usr/include/IntervalTree.h -- Installing: /<>/debian/tmp/usr/include/catch.hpp -- Installing: /<>/debian/tmp/usr/include/multichoose.h -- Installing: /<>/debian/tmp/usr/include/multipermute.h -- Installing: /<>/debian/tmp/usr/include/BedReader.h -- Installing: /<>/debian/tmp/usr/include/Variant.h -- Installing: /<>/debian/tmp/usr/include/cdflib.hpp -- Installing: /<>/debian/tmp/usr/include/convert.h -- Installing: /<>/debian/tmp/usr/include/gpatInfo.hpp -- Installing: /<>/debian/tmp/usr/include/join.h -- Installing: /<>/debian/tmp/usr/include/makeUnique.h -- Installing: /<>/debian/tmp/usr/include/mt19937ar.h -- Installing: /<>/debian/tmp/usr/include/pdflib.hpp -- Installing: /<>/debian/tmp/usr/include/rnglib.hpp -- Installing: /<>/debian/tmp/usr/include/split.h -- Installing: /<>/debian/tmp/usr/include/var.hpp -- Installing: /<>/debian/tmp/usr/include/vec128int.h -- Installing: /<>/debian/tmp/usr/include/veclib_types.h -- Installing: /<>/debian/tmp/usr/man/man1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhethomratio.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcommonsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfleftalign.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsample2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/meltEHH.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfprimers.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfafpath.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2dag.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepgeno.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcountalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfo2qual.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfdistance.1 -- Installing: /<>/debian/tmp/usr/man/man1/normalize-iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfhetcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffixup.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotate.1 -- Installing: /<>/debian/tmp/usr/man/man1/wcFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypecompare.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfbreakmulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflength.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteGPAT++.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsitesummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/plotHaps.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremoveaberrantgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/bFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/hapLrt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstreamsort.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplediff.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaltcount.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandom.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfoverlay.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnumalt.1 -- Installing: /<>/debian/tmp/usr/man/man1/genotypeSummary.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfflatten.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcleancomplex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfstats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfannotategenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremap.1 -- Installing: /<>/debian/tmp/usr/man/man1/pVst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcheck.1 -- Installing: /<>/debian/tmp/usr/man/man1/popStats.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfroc.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglxgt.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcat.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfqual2info.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfaddinfo.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfindex.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfsamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfallelicprimitives.1 -- Installing: /<>/debian/tmp/usr/man/man1/smoother.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniq.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfintersect.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenotypes.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2alleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfentropy.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfld.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfglbound.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2tsv.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfecho.1 -- Installing: /<>/debian/tmp/usr/man/man1/permuteSmooth.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfnulldotslashdot.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentIhs.1 -- Installing: /<>/debian/tmp/usr/man/man1/dumpContigsFromHeader.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcflib.1 -- Installing: /<>/debian/tmp/usr/man/man1/segmentFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfevenregions.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcombine.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfclassify.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfremovesamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcffilter.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgeno2haplo.1 -- Installing: /<>/debian/tmp/usr/man/man1/pFst.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfuniqalleles.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfcreatemulti.1 -- Installing: /<>/debian/tmp/usr/man/man1/iHS.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfgenosamplenames.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcf2fasta.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfparsealts.1 -- Installing: /<>/debian/tmp/usr/man/man1/abba-baba.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfkeepsamples.1 -- Installing: /<>/debian/tmp/usr/man/man1/sequenceDiversity.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfinfosummarize.1 -- Installing: /<>/debian/tmp/usr/man/man1/vcfrandomsample.1 make[1]: Leaving directory '/<>/obj-mips64el-linux-gnuabi64' debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install find debian -name filevercmp.h -delete cp -a filevercmp/filevercmp.h debian/libvcflib-dev/usr/include/vcflib/ mkdir -p debian/libvcflib-dev/usr/include/intervaltree mv debian/libvcflib-dev/usr/include/vcflib/IntervalTree.h debian/libvcflib-dev/usr/include/intervaltree # install pkg-config file mkdir -p /<>/debian/libvcflib-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig mv libvcflib.pc /<>/debian/libvcflib-dev/usr/lib/mips64el-linux-gnuabi64/pkgconfig rm -rf debian/*/usr/lib/vcflib/bin/*.R for pl in `grep -Rl '#!/usr/bin/env' debian/*/usr/*` ; do \ sed -i '1s?^#!/usr/bin/env[[:space:]]\+perl?#!/usr/bin/perl?' ${pl} ; \ done grep: debian/libvcflib-dev/usr/lib/mips64el-linux-gnuabi64/libvcflib.so: No such file or directory make[1]: Leaving directory '/<>' dh_installdocs -a -O--buildsystem=cmake dh_installchangelogs -a -O--buildsystem=cmake dh_installman -a -O--buildsystem=cmake dh_installsystemduser -a -O--buildsystem=cmake dh_lintian -a -O--buildsystem=cmake dh_perl -a -O--buildsystem=cmake debian/rules override_dh_link make[1]: Entering directory '/<>' dh_link for rscript in debian/libvcflib-tools/usr/lib/vcflib/scripts/*.R ; do \ scriptname=$(basename $rscript) ; \ dh_link -p libvcflib-tools usr/lib/vcflib/scripts/$scriptname usr/lib/R/site-library/vcflib/$scriptname ; \ done make[1]: Leaving directory '/<>' dh_strip_nondeterminism -a -O--buildsystem=cmake dh_compress -a -O--buildsystem=cmake debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms chmod -x debian/*/usr/lib/vcflib/scripts/*.R make[1]: Leaving directory '/<>' dh_missing -a -O--buildsystem=cmake dh_dwz -a -O--buildsystem=cmake dh_strip -a -O--buildsystem=cmake dh_makeshlibs -a -O--buildsystem=cmake dh_shlibdeps -a -O--buildsystem=cmake dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/libvcflib1/usr/lib/mips64el-linux-gnuabi64/libvcflib.so.1 was not linked against libdisorder.so.0 (it uses none of the library's symbols) dh_installdeb -a -O--buildsystem=cmake dh_gencontrol -a -O--buildsystem=cmake dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package libvcflib-tools: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a -O--buildsystem=cmake dh_builddeb -a -O--buildsystem=cmake dpkg-deb: building package 'libvcflib1' in '../libvcflib1_1.0.3+dfsg-2_mips64el.deb'. dpkg-deb: building package 'libvcflib1-dbgsym' in '../libvcflib1-dbgsym_1.0.3+dfsg-2_mips64el.deb'. dpkg-deb: building package 'libvcflib-dev' in '../libvcflib-dev_1.0.3+dfsg-2_mips64el.deb'. dpkg-deb: building package 'libvcflib-tools' in '../libvcflib-tools_1.0.3+dfsg-2_mips64el.deb'. dpkg-deb: building package 'libvcflib-tools-dbgsym' in '../libvcflib-tools-dbgsym_1.0.3+dfsg-2_mips64el.deb'. dpkg-genbuildinfo --build=any -O../libvcflib_1.0.3+dfsg-2_mips64el.buildinfo dpkg-genchanges --build=any -O../libvcflib_1.0.3+dfsg-2_mips64el.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-01-25T02:40:47Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ libvcflib_1.0.3+dfsg-2_mips64el.changes: ---------------------------------------- Format: 1.8 Date: Fri, 07 Oct 2022 16:26:06 +0200 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym Built-For-Profiles: cross nocheck Architecture: mips64el Version: 1.0.3+dfsg-2 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: libvcflib-dev - C++ library for parsing and manipulating VCF files (development) libvcflib-tools - C++ library for parsing and manipulating VCF files (tools) libvcflib1 - C++ library for parsing and manipulating VCF files Changes: libvcflib (1.0.3+dfsg-2) unstable; urgency=medium . * Fix watch file * Standards-Version: 4.6.1 (routine-update) Checksums-Sha1: 8ff795b6ea43db6975de4917c5896f43292b26fa 84592 libvcflib-dev_1.0.3+dfsg-2_mips64el.deb 2b27c11b95224e6ceb9d22d5a32b80ace9f11330 17240936 libvcflib-tools-dbgsym_1.0.3+dfsg-2_mips64el.deb a577b7c72608ac2c2c4441e88eeb82c41b0837d4 660608 libvcflib-tools_1.0.3+dfsg-2_mips64el.deb 41c375d3a8f6c93ae650e13730099b2af2f17a34 1489604 libvcflib1-dbgsym_1.0.3+dfsg-2_mips64el.deb 714e0221f2d10c5f34a8311dd31e34bbf10ce88b 137108 libvcflib1_1.0.3+dfsg-2_mips64el.deb cac092ece474abe4a6094d59322dab9c7a14100a 7762 libvcflib_1.0.3+dfsg-2_mips64el.buildinfo Checksums-Sha256: f534be57eb9107eb3e52c2127a8d0d4d55db2ed390b72ce3db506cb267c7b311 84592 libvcflib-dev_1.0.3+dfsg-2_mips64el.deb ca854a2ebe57ff53a82971ba6ebfcbc570237726ff147b6860b0d1d0a6dffbaa 17240936 libvcflib-tools-dbgsym_1.0.3+dfsg-2_mips64el.deb 0959f975baf0ad0c33c1caa65a818d1a95044a6df0c9ba7f71f58f9ecf12f8a7 660608 libvcflib-tools_1.0.3+dfsg-2_mips64el.deb 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renamed to /<>/libvcflib_1.0.3+dfsg-2_mips64el.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: libvcflib Binary: libvcflib-dev libvcflib-tools libvcflib-tools-dbgsym libvcflib1 libvcflib1-dbgsym Architecture: mips64el Version: 1.0.3+dfsg-2 Checksums-Md5: fbbf0ea48ca984dbeeef5188ceb5b8b0 84592 libvcflib-dev_1.0.3+dfsg-2_mips64el.deb fdcc05897b699a44ed24fb6b1c873af0 17240936 libvcflib-tools-dbgsym_1.0.3+dfsg-2_mips64el.deb ee317e8b23ca6e99bb744aff5cb06281 660608 libvcflib-tools_1.0.3+dfsg-2_mips64el.deb 31d4a9860ff88b0566119ba3ab6842bf 1489604 libvcflib1-dbgsym_1.0.3+dfsg-2_mips64el.deb 21bba20de30c1ece09754538afb6b3d4 137108 libvcflib1_1.0.3+dfsg-2_mips64el.deb Checksums-Sha1: 8ff795b6ea43db6975de4917c5896f43292b26fa 84592 libvcflib-dev_1.0.3+dfsg-2_mips64el.deb 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amd64 Build-Date: Wed, 25 Jan 2023 02:40:47 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-10), autotools-dev (= 20220109.1), base-files (= 12.3), base-passwd (= 3.6.1), bash (= 5.2.15-2), binutils (= 2.40-2), binutils-common (= 2.40-2), binutils-x86-64-linux-gnu (= 2.40-2), bsdextrautils (= 2.38.1-4), bsdutils (= 1:2.38.1-4), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), cmake (= 3.25.1-1), cmake-data (= 3.25.1-1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-11 (= 11.3.0-11), cpp-12 (= 12.2.0-14), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-3), dpkg (= 1.21.18), dpkg-dev (= 1.21.18), dwz (= 0.15-1), file (= 1:5.44-2), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-11 (= 11.3.0-11), gcc-11-base (= 11.3.0-11), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-10), gettext-base (= 0.21-10), grep (= 3.8-3), groff-base (= 1.22.4-9), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.6.2-1), libasan6 (= 11.3.0-11), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.7-1.1), libaudit1 (= 1:3.0.7-1.1+b2), libbinutils (= 2.40-2), libblkid1 (= 2.38.1-4), libbrotli1 (= 1.0.9-2+b5), libbz2-1.0 (= 1.0.8-5+b1), libbz2-dev (= 1.0.8-5+b1), libc-bin (= 2.36-8), libc-dev-bin (= 2.36-8), libc6 (= 2.36-8), libc6-dev (= 2.36-8), libcap-ng0 (= 0.8.3-1+b2), libcap2 (= 1:2.66-3), libcc1-0 (= 12.2.0-14), libcom-err2 (= 1.46.6~rc1-1.1), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libcurl3-gnutls (= 7.87.0-2), libcurl4 (= 7.87.0-2), libcurl4-gnutls-dev (= 7.87.0-2), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.266), libdebhelper-perl (= 13.11.4), libdeflate-dev (= 1.14-1), libdeflate0 (= 1.14-1), libdisorder-dev (= 0.0.2+git20130809.8062ee1-4+b1), libdisorder0 (= 0.0.2+git20130809.8062ee1-4+b1), libdpkg-perl (= 1.21.18), libelf1 (= 0.188-2.1), libexpat1 (= 2.5.0-1), libfastahack-dev (= 1.0.0+dfsg-10), libfastahack0 (= 1.0.0+dfsg-10), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.3.0-11), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.8-4), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-1), libhogweed6 (= 3.8.1-2), libhts-dev (= 1.16+ds-3), libhts3 (= 1.16+ds-3), libhtscodecs2 (= 1.3.0-4), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libjsoncpp25 (= 1.9.5-4), libk5crypto3 (= 1.20.1-1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1), libkrb5support0 (= 1.20.1-1), libldap-2.5-0 (= 2.5.13+dfsg-3), liblsan0 (= 12.2.0-14), liblz4-1 (= 1.9.4-1), liblzma-dev (= 5.4.1-0.0), liblzma5 (= 5.4.1-0.0), libmagic-mgc (= 1:5.44-2), libmagic1 (= 1:5.44-2), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-4), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libncursesw6 (= 6.4-1), libnettle8 (= 3.8.1-2), libnghttp2-14 (= 1.51.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libpkgconf3 (= 1.8.1-1), libproc2-0 (= 2:4.0.2-3), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 12.2.0-14), librhash0 (= 1.4.3-3), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.28+dfsg-10), libsasl2-modules-db (= 2.1.28+dfsg-10), libseccomp2 (= 2.5.4-1+b2), libselinux1 (= 3.4-1+b4), libsmartcols1 (= 2.38.1-4), libsmithwaterman-dev (= 0.0+git20160702.2610e25-12+b1), libsmithwaterman0 (= 0.0+git20160702.2610e25-12+b1), libssh2-1 (= 1.10.0-3+b1), libssl3 (= 3.0.7-2), libssw-dev (= 1.1-13), libssw0 (= 1.1-13), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.4-1), libtabixpp-dev (= 1.1.2-1), libtabixpp0 (= 1.1.2-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-1), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan0 (= 11.3.0-11), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.4-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-4), libuv1 (= 1.44.2-1), libxml2 (= 2.9.14+dfsg-1.1+b2), libzstd1 (= 1.5.2+dfsg2-3), linux-libc-dev (= 6.1.7-1), login (= 1:4.13+dfsg1-1), m4 (= 1.4.19-2), make (= 4.3-4.1), man-db (= 2.11.2-1), markdown (= 1.0.1-12), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-1), ncurses-bin (= 6.4-1), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), pkg-config (= 1.8.1-1), pkgconf (= 1.8.1-1), pkgconf-bin (= 1.8.1-1), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.2-3), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-2), tar (= 1.34+dfsg-1.1), usrmerge (= 35), util-linux (= 2.38.1-4), util-linux-extra (= 2.38.1-4), xz-utils (= 5.4.1-0.0), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1665152766" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libvcflib-dev_1.0.3+dfsg-2_mips64el.deb --------------------------------------- new Debian package, version 2.0. size 84592 bytes: control archive=1668 bytes. 1271 bytes, 27 lines control 1552 bytes, 23 lines md5sums Package: libvcflib-dev Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 550 Depends: libvcflib1 (= 1.0.3+dfsg-2), libdisorder-dev, libfastahack-dev, libtabixpp-dev, libsmithwaterman-dev, libssw-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (development) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains the static library and the header files. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/intervaltree/ -rw-r--r-- root/root 11829 2022-02-16 17:07 ./usr/include/intervaltree/IntervalTree.h drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/include/vcflib/ -rw-r--r-- root/root 5828 2022-02-16 17:06 ./usr/include/vcflib/BedReader.h -rw-r--r-- root/root 22863 2022-10-07 14:26 ./usr/include/vcflib/Variant.h -rw-r--r-- root/root 368608 2022-02-16 17:07 ./usr/include/vcflib/catch.hpp -rw-r--r-- root/root 6628 2022-02-16 17:06 ./usr/include/vcflib/cdflib.hpp -rw-r--r-- root/root 697 2022-02-16 17:06 ./usr/include/vcflib/convert.h -rw-r--r-- root/root 1777 2022-02-16 17:07 ./usr/include/vcflib/filevercmp.h -rw-r--r-- root/root 2053 2022-02-16 17:06 ./usr/include/vcflib/gpatInfo.hpp -rw-r--r-- root/root 1238 2022-02-16 17:06 ./usr/include/vcflib/join.h -rw-r--r-- root/root 194 2022-02-16 17:06 ./usr/include/vcflib/makeUnique.h -rw-r--r-- root/root 6580 2022-02-16 17:06 ./usr/include/vcflib/mt19937ar.h -rw-r--r-- root/root 2155 2022-02-16 17:07 ./usr/include/vcflib/multichoose.h -rw-r--r-- root/root 3446 2022-02-16 17:07 ./usr/include/vcflib/multipermute.h -rw-r--r-- root/root 2507 2022-02-16 17:06 ./usr/include/vcflib/pdflib.hpp -rw-r--r-- root/root 1295 2022-02-16 17:06 ./usr/include/vcflib/rnglib.hpp -rw-r--r-- root/root 1825 2022-02-16 17:06 ./usr/include/vcflib/split.h -rw-r--r-- root/root 2311 2022-02-16 17:06 ./usr/include/vcflib/var.hpp -rw-r--r-- root/root 75596 2022-02-16 17:06 ./usr/include/vcflib/vec128int.h -rw-r--r-- root/root 14148 2022-02-16 17:06 ./usr/include/vcflib/veclib_types.h drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/libvcflib.so -> libvcflib.so.1 drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/ -rw-r--r-- root/root 283 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/pkgconfig/libvcflib.pc drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/ -rw-r--r-- root/root 1652 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/changelog.Debian.gz -rw-r--r-- root/root 2044 2022-10-07 14:26 ./usr/share/doc/libvcflib-dev/copyright drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 91 2022-10-07 14:26 ./usr/share/lintian/overrides/libvcflib-dev libvcflib-tools-dbgsym_1.0.3+dfsg-2_mips64el.deb ------------------------------------------------ new Debian package, version 2.0. size 17240936 bytes: control archive=4276 bytes. 3773 bytes, 12 lines control 8897 bytes, 84 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14:26 ./usr/lib/debug/.build-id/fd/ -rw-r--r-- root/root 162232 2022-10-07 14:26 ./usr/lib/debug/.build-id/fd/3733bb8c56597b5709040ee646d1d9a588a68a.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 918032 2022-10-07 14:26 ./usr/lib/debug/.dwz/mips64el-linux-gnuabi64/libvcflib-tools.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib-tools-dbgsym -> libvcflib-tools libvcflib-tools_1.0.3+dfsg-2_mips64el.deb ----------------------------------------- new Debian package, version 2.0. size 660608 bytes: control archive=6660 bytes. 1534 bytes, 29 lines control 17697 bytes, 258 lines md5sums Package: libvcflib-tools Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 7616 Depends: libc6 (>= 2.34), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 3.0), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0), libvcflib1 (>= 1.0.3+dfsg), python3:any, r-base-core, r-cran-plyr, r-cran-ggplot2, r-cran-gridbase Suggests: r-cran-pracma Breaks: libvcflib1 (<= 1.0.0~rc2+dfsg-3) Replaces: libvcflib1 (<= 1.0.0~rc2+dfsg-3) Section: science Priority: optional Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files (tools) The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. . This package contains several tools using the library. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/bin/ -rwxr-xr-x root/root 69960 2022-10-07 14:26 ./usr/bin/vcf2tsv -rwxr-xr-x root/root 138048 2022-10-07 14:26 ./usr/bin/vcfallelicprimitives -rwxr-xr-x root/root 70664 2022-10-07 14:26 ./usr/bin/vcffilter -rwxr-xr-x root/root 69616 2022-10-07 14:26 ./usr/bin/vcffixup -rwxr-xr-x root/root 69296 2022-10-07 14:26 ./usr/bin/vcfkeepinfo -rwxr-xr-x root/root 404 2022-10-07 14:26 ./usr/bin/vcflib lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/bin/vcfstreamsort -> ../lib/vcflib/bin/vcfstreamsort lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/bin/vcfuniq -> ../lib/vcflib/bin/vcfuniq -rwxr-xr-x root/root 69232 2022-10-07 14:26 ./usr/bin/vcfuniqalleles drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/R/ drwxr-xr-x root/root 0 2022-10-07 14:26 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md5sums Package: libvcflib1-dbgsym Source: libvcflib Version: 1.0.3+dfsg-2 Auto-Built-Package: debug-symbols Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 1560 Depends: libvcflib1 (= 1.0.3+dfsg-2) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libvcflib1 Build-Ids: 291bb545f2bb0f34771685175e350f4bc04cd615 drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 1586272 2022-10-07 14:26 ./usr/lib/debug/.build-id/29/1bb545f2bb0f34771685175e350f4bc04cd615.debug drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib1-dbgsym -> libvcflib1 libvcflib1_1.0.3+dfsg-2_mips64el.deb ------------------------------------ new Debian package, version 2.0. size 137108 bytes: control archive=1228 bytes. 1267 bytes, 25 lines control 302 bytes, 4 lines md5sums 39 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libvcflib1 Source: libvcflib Version: 1.0.3+dfsg-2 Architecture: mips64el Maintainer: Debian Med Packaging Team Installed-Size: 486 Depends: libc6 (>= 2.29), libdisorder0 (>= 0.0.2), libfastahack0 (>= 0.0+git20160702.bbc645f), libgcc-s1 (>= 3.0), libsmithwaterman0 (>= 0.0+git20160702.2610e25), libstdc++6 (>= 11), libtabixpp0 (>= 1.0.0) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/vcflib/vcflib Description: C++ library for parsing and manipulating VCF files The Variant Call Format (VCF) is a flat-file, tab-delimited textual format intended to concisely describe reference-indexed variations between individuals. VCF provides a common interchange format for the description of variation in individuals and populations of samples, and has become the defacto standard reporting format for a wide array of genomic variant detectors. . vcflib provides methods to manipulate and interpret sequence variation as it can be described by VCF. It is both: . * an API for parsing and operating on records of genomic variation as it can be described by the VCF format, * and a collection of command-line utilities for executing complex manipulations on VCF files. drwxr-xr-x root/root 0 2022-10-07 14:26 ./ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/ -rw-r--r-- root/root 479304 2022-10-07 14:26 ./usr/lib/mips64el-linux-gnuabi64/libvcflib.so.1 drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/doc/libvcflib1/ -rw-r--r-- root/root 1651 2022-10-07 14:26 ./usr/share/doc/libvcflib1/changelog.Debian.gz -rw-r--r-- root/root 2044 2022-10-07 14:26 ./usr/share/doc/libvcflib1/copyright drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/ drwxr-xr-x root/root 0 2022-10-07 14:26 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 88 2022-10-07 14:26 ./usr/share/lintian/overrides/libvcflib1 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [624 B] Get:5 copy:/<>/apt_archive ./ Packages [694 B] Fetched 2281 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:mips64el t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [856 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:3 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-1.3 [69.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.7-2 [1399 kB] Get:5 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:6 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.65-1 [33.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-5 [48.5 kB] Get:8 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2-1.3 [166 kB] Get:9 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-1 [564 kB] Get:10 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.40.1-1 [838 kB] Get:11 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-1 [948 kB] Get:12 http://localhost:3142/debian sid/main amd64 iso-codes all 4.12.0-1 [2888 kB] Get:13 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b2 [69.2 kB] Get:15 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2+b1 [10.5 kB] Get:16 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-2 [15.8 kB] Get:18 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2+b1 [23.1 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.63-1+b1 [44.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-2+b1 [123 kB] Get:26 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:29 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.17-1 [90.4 kB] Get:30 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.80-1 [101 kB] Get:31 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.55-1 [220 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:33 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.14-1 [18.1 kB] Get:34 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b1 [36.4 kB] Get:35 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.46-1 [13.7 kB] Get:36 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-2 [16.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-2+b1 [24.8 kB] Get:38 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.929-1 [10.5 kB] Get:39 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.113-1 [10.6 kB] Get:40 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.989-1 [50.5 kB] Get:41 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:42 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1+b1 [130 kB] Get:43 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-2 [26.8 kB] Get:44 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:45 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:46 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-2 [43.6 kB] Get:48 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1+b1 [35.2 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:53 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b1 [99.5 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2+b1 [24.3 kB] Get:57 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1+b1 [29.4 kB] Get:58 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:59 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:62 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:63 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:64 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:74 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:75 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.078-1 [217 kB] Get:76 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:80 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:84 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-3 [21.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:100 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:101 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:104 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.001+ds-1+b1 [102 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.001+ds-2 [105 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.32-1 [57.6 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB] Get:112 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:114 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:118 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.84+ds-1+b1 [34.7 kB] Get:122 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:123 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:124 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:125 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:126 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:127 http://localhost:3142/debian sid/main amd64 lintian all 2.116.1 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (155 MB/s) Selecting previously unselected package netbase. (Reading database ... 25024 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.7-2_amd64.deb ... Unpacking openssl (3.0.7-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package libreadline8:amd64. 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Setting up libapt-pkg-perl (0.1.40+b2) ... Setting up liblz1:amd64 (1.13-4) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1+b1) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b1) ... Setting up unzip (6.0-27) ... Setting up libsqlite3-0:amd64 (3.40.1-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.84+ds-1+b1) ... Setting up libio-interactive-perl (1.023-2) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2+b1) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:amd64 (2.5.5-5) ... Setting up libconfig-tiny-perl (2.28-2) ... Setting up libsereal-encoder-perl (5.001+ds-2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004004-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.32-1) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.65-1) ... Setting up libvariable-magic-perl (0.63-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2+b1) ... Setting up libparams-util-perl (1.102-2+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:amd64 (0.26-2+b1) ... Setting up libsyntax-keyword-try-perl (0.28-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-3) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-3) ... Setting up libdevel-stacktrace-perl (2.0400-2) ... Setting up libclass-xsaccessor-perl (1.19-4+b1) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b1) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.7-2) ... Setting up libtext-levenshteinxs-perl (0.03-5+b1) ... Setting up libperlio-gzip-perl (0.20-1+b1) ... Setting up readline-common (8.2-1.3) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.001+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.17-1) ... Setting up iso-codes (4.12.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.80-1) ... Setting up gpgconf (2.2.40-1) ... Setting up libio-socket-ssl-perl (2.078-1) ... Setting up gpg (2.2.40-1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.1) ... Setting up sbuild-build-depends-lintian-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.36-8) ... Processing triggers for man-db (2.11.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 494460 Build-Time: 275 Distribution: unstable Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 11 Job: libvcflib_1.0.3+dfsg-2 Lintian: pass Machine Architecture: amd64 Package: libvcflib Package-Time: 295 Source-Version: 1.0.3+dfsg-2 Space: 494460 Status: successful Version: 1.0.3+dfsg-2 -------------------------------------------------------------------------------- Finished at 2023-01-25T02:40:47Z Build needed 00:04:55, 494460k disk space