sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | loki 2.4.7.4-8 (mipsel) Sun, 02 Jun 2019 21:45:53 +0000 | +==============================================================================+ Package: loki Version: 2.4.7.4-8 Source Version: 2.4.7.4-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-1ff0bd02-ebe7-43c4-a708-37eb004ae6e5' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-02-0818.00.pdiff [9140 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-02-1418.25.pdiff [1654 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-02-2019.51.pdiff [1848 B] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2019-06-02-2019.51.pdiff [1848 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-02-0818.00.pdiff [440 B] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-02-1418.25.pdiff [11.4 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-02-2019.51.pdiff [1594 B] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-06-02-2019.51.pdiff [1594 B] Get:10 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8027 kB] Fetched 8356 kB in 2s (4298 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'loki' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/loki.git Please use: git clone https://salsa.debian.org/med-team/loki.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 930 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main loki 2.4.7.4-8 (dsc) [1909 B] Get:2 http://debian.oregonstate.edu/debian unstable/main loki 2.4.7.4-8 (tar) [904 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main loki 2.4.7.4-8 (diff) [23.9 kB] Fetched 930 kB in 0s (34.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/loki-qRIJBU/loki-2.4.7.4' with '<>' I: NOTICE: Log filtering will replace 'build/loki-qRIJBU' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-IMdzPQ/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IMdzPQ/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-IMdzPQ/apt_archive ./ Packages [453 B] Fetched 1773 B in 0s (99.7 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-mipsel-linux-gnu gcc-8-doc libstdc++6-8-dbg-mipsel-cross gcc-8-multilib-mipsel-linux-gnu libgcc1-dbg-mipsel-cross libgomp1-dbg-mipsel-cross libitm1-dbg-mipsel-cross libatomic1-dbg-mipsel-cross libasan5-dbg-mipsel-cross liblsan0-dbg-mipsel-cross libtsan0-dbg-mipsel-cross libubsan1-dbg-mipsel-cross libmpx2-dbg-mipsel-cross libquadmath0-dbg-mipsel-cross manpages-dev autoconf automake libtool flex bison gdb-mipsel-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-mipsel-linux-gnu cpp-8-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel dpkg-cross file g++-8-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-8-cross-base gcc-8-mipsel-linux-gnu gcc-8-mipsel-linux-gnu-base gcc-mipsel-linux-gnu libatomic1-mipsel-cross libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-mipsel-cross libgcc1-mipsel-cross libgomp1-mipsel-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-mipsel-cross libstdc++6-mipsel-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-mipsel-cross sbuild-build-depends-core-dummy:mipsel sensible-utils ucf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 40.0 MB of archives. After this operation, 146 MB of additional disk space will be used. Get:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.31.1-16 [2487 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu-base amd64 8.3.0-7cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6278 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-7cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.28-10cross2 [1229 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-mipsel-cross all 1:8.3.0-7cross1 [46.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 8.3.0-7cross1 [69.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 8.3.0-7cross1 [6692 B] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-mipsel-cross all 8.3.0-7cross1 [211 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6691 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:8.3.0-1 [1452 B] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 8.3.0-7cross1 [311 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 4.19.28-2cross2 [1240 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.28-10cross2 [2320 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-mipsel-cross all 8.3.0-7cross1 [1535 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-mipsel-linux-gnu amd64 8.3.0-7cross1 [6853 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:8.3.0-1 [1172 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.6 [6564 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 40.0 MB in 1s (62.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11953 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Selecting previously unselected package libgcc-8-dev-mipsel-cross. Preparing to unpack .../16-libgcc-8-dev-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package gcc-8-mipsel-linux-gnu. Preparing to unpack .../17-gcc-8-mipsel-linux-gnu_8.3.0-7cross1_amd64.deb ... Unpacking gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../18-gcc-mipsel-linux-gnu_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:8.3.0-1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../19-libstdc++6-mipsel-cross_8.3.0-7cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (8.3.0-7cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../20-linux-libc-dev-mipsel-cross_4.19.28-2cross2_all.deb ... Unpacking linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... 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Unpacking libxml-sax-perl (1.00+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../32-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../33-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../34-libyaml-perl_1.27-1_all.deb ... Unpacking libyaml-perl (1.27-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../35-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../36-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../37-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../38-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../39-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-mipsel. Preparing to unpack .../40-crossbuild-essential-mipsel_12.6_all.deb ... Unpacking crossbuild-essential-mipsel (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:mipsel. Preparing to unpack .../41-sbuild-build-depends-core-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-7cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libc6-mipsel-cross (2.28-10cross2) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up libatomic1-mipsel-cross (8.3.0-7cross1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up libgcc1-mipsel-cross (1:8.3.0-7cross1) ... Setting up binutils-mipsel-linux-gnu (2.31.1-16) ... Setting up libgomp1-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu-base:amd64 (8.3.0-7cross1) ... Setting up linux-libc-dev-mipsel-cross (4.19.28-2cross2) ... Setting up sensible-utils (0.0.12) ... Setting up cpp-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up libc6-dev-mipsel-cross (2.28-10cross2) ... Setting up libstdc++6-mipsel-cross (8.3.0-7cross1) ... Setting up cpp-mipsel-linux-gnu (4:8.3.0-1) ... Setting up ucf (3.0038+nmu1) ... Setting up libstdc++-8-dev-mipsel-cross (8.3.0-7cross1) ... Setting up gcc-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-8-mipsel-linux-gnu (8.3.0-7cross1) ... Setting up g++-mipsel-linux-gnu (4:8.3.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.6) ... Setting up sbuild-build-depends-core-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-IMdzPQ/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IMdzPQ/apt_archive ./ Sources [482 B] Get:5 copy:/<>/resolver-IMdzPQ/apt_archive ./ Packages [569 B] Fetched 2014 B in 0s (104 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:mipsel 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 844 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [844 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 844 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:mipsel. (Reading database ... 15127 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:mipsel (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~) dpkg-deb: building package 'sbuild-build-depends-loki-dummy' in '/<>/resolver-IMdzPQ/apt_archive/sbuild-build-depends-loki-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-loki-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IMdzPQ/apt_archive ./ Sources [630 B] Get:5 copy:/<>/resolver-IMdzPQ/apt_archive ./ Packages [712 B] Fetched 2305 B in 0s (115 kB/s) Reading package lists... Reading package lists... Install loki build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:mipsel libc-l10n:mipsel locales:mipsel manpages-dev:mipsel libstdc++-8-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:mipsel gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libbsd0 libc6:mipsel libc6-dev:mipsel libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:mipsel libgcc1:mipsel libglib2.0-0 libgomp1:mipsel libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:mipsel libstdc++6:mipsel libtool libuchardet0 linux-libc-dev:mipsel m4 man-db po-debconf sbuild-build-depends-loki-dummy:mipsel 0 upgraded, 38 newly installed, 0 to remove and 0 not upgraded. Need to get 17.9 MB of archives. After this operation, 79.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ sbuild-build-depends-loki-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.3.0-7 [191 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc1 mipsel 1:8.3.0-7 [45.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.28-10 [2429 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 8.3.0-7 [6692 B] Get:33 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 4.19.37-3 [1178 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.28-10 [2322 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 8.3.0-7 [70.9 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.3.0-7 [210 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 8.3.0-7 [349 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.3.0-7 [1552 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 17.9 MB in 0s (52.2 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15127 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../06-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../07-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../08-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../09-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../10-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../11-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../12-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../13-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../14-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../15-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../16-libfile-stripnondeterminism-perl_1.1.2-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.1.2-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../17-dh-strip-nondeterminism_1.1.2-1_all.deb ... Unpacking dh-strip-nondeterminism (1.1.2-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../18-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../19-dwz_0.12-3_amd64.deb ... Unpacking dwz (0.12-3) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../20-libglib2.0-0_2.58.3-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.58.3-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../21-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../22-libncurses6_6.1+20181013-2_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20181013-2) ... Selecting previously unselected package gettext. Preparing to unpack .../23-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../24-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../25-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../26-debhelper_12.1.1_all.deb ... Unpacking debhelper (12.1.1) ... Selecting previously unselected package gcc-8-base:mipsel. Preparing to unpack .../27-gcc-8-base_8.3.0-7_mipsel.deb ... Unpacking gcc-8-base:mipsel (8.3.0-7) ... Selecting previously unselected package libgcc1:mipsel. Preparing to unpack .../28-libgcc1_1%3a8.3.0-7_mipsel.deb ... Unpacking libgcc1:mipsel (1:8.3.0-7) ... Selecting previously unselected package libc6:mipsel. Preparing to unpack .../29-libc6_2.28-10_mipsel.deb ... Unpacking libc6:mipsel (2.28-10) ... Selecting previously unselected package libatomic1:mipsel. Preparing to unpack .../30-libatomic1_8.3.0-7_mipsel.deb ... Unpacking libatomic1:mipsel (8.3.0-7) ... Selecting previously unselected package linux-libc-dev:mipsel. Preparing to unpack .../31-linux-libc-dev_4.19.37-3_mipsel.deb ... Unpacking linux-libc-dev:mipsel (4.19.37-3) ... Selecting previously unselected package libc6-dev:mipsel. Preparing to unpack .../32-libc6-dev_2.28-10_mipsel.deb ... Unpacking libc6-dev:mipsel (2.28-10) ... Selecting previously unselected package libgomp1:mipsel. Preparing to unpack .../33-libgomp1_8.3.0-7_mipsel.deb ... Unpacking libgomp1:mipsel (8.3.0-7) ... Selecting previously unselected package libgcc-8-dev:mipsel. Preparing to unpack .../34-libgcc-8-dev_8.3.0-7_mipsel.deb ... Unpacking libgcc-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package libstdc++6:mipsel. Preparing to unpack .../35-libstdc++6_8.3.0-7_mipsel.deb ... Unpacking libstdc++6:mipsel (8.3.0-7) ... Selecting previously unselected package libstdc++-8-dev:mipsel. Preparing to unpack .../36-libstdc++-8-dev_8.3.0-7_mipsel.deb ... Unpacking libstdc++-8-dev:mipsel (8.3.0-7) ... Selecting previously unselected package sbuild-build-depends-loki-dummy:mipsel. Preparing to unpack .../37-sbuild-build-depends-loki-dummy_0.invalid.0_mipsel.deb ... Unpacking sbuild-build-depends-loki-dummy:mipsel (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.58.3-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:mipsel (4.19.37-3) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20181013-2) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.3.0-7) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:mipsel (2.28-10) ... Setting up libc6-dev:mipsel (2.28-10) ... Setting up libgcc1:mipsel (1:8.3.0-7) ... Setting up libgomp1:mipsel (8.3.0-7) ... Setting up dh-autoreconf (19) ... Setting up libatomic1:mipsel (8.3.0-7) ... Setting up libgcc-8-dev:mipsel (8.3.0-7) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libstdc++6:mipsel (8.3.0-7) ... Setting up libstdc++-8-dev:mipsel (8.3.0-7) ... Setting up debhelper (12.1.1) ... Setting up sbuild-build-depends-loki-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-7 gcc-8_8.3.0-7 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 linux-libc-dev_4.19.37-3 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.3 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-mipsel-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-7 cpp-8-mipsel-linux-gnu_8.3.0-7cross1 cpp-mipsel-linux-gnu_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-mipsel_12.6 dash_0.5.10.2-5 debconf_1.5.72 debhelper_12.1.1 debian-archive-keyring_2019.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-3 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.1-3 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-7 g++-8-mipsel-linux-gnu_8.3.0-7cross1 g++-mipsel-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-7 gcc-8-base_8.3.0-7 gcc-8-cross-base_8.3.0-7cross1 gcc-8-mipsel-linux-gnu_8.3.0-7cross1 gcc-8-mipsel-linux-gnu-base_8.3.0-7cross1 gcc-mipsel-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-2 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_8.3.0-7 libatomic1_8.3.0-7 libatomic1-mipsel-cross_8.3.0-7cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-3 libaudit1_1:2.8.4-3 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-dev_2.28-10 libc6-dev-mipsel-cross_2.28-10cross2 libc6-mipsel-cross_2.28-10cross2 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-7 libcom-err2_1.45.1-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.6 libelf1_0.176-1.1 libext2fs2_1.45.1-3 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-7 libgcc-8-dev-mipsel-cross_8.3.0-7cross1 libgcc1_1:8.3.0-7 libgcc1-mipsel-cross_1:8.3.0-7cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.7-3 libgomp1_8.3.0-7 libgomp1-mipsel-cross_8.3.0-7cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-7 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-7 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-7 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-7 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.1-3 libstdc++-8-dev_8.3.0-7 libstdc++-8-dev-mipsel-cross_8.3.0-7cross1 libstdc++6_8.3.0-7 libstdc++6-mipsel-cross_8.3.0-7cross1 libsystemd0_241-5 libtasn1-6_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-7 libubsan1_8.3.0-7 libuchardet0_0.0.6-3 libudev1_241-5 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-3 linux-libc-dev-mipsel-cross_4.19.28-2cross2 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-loki-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-6 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Fri Oct 12 05:06:53 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./loki_2.4.7.4-8.dsc dpkg-source: info: extracting loki in /<> dpkg-source: info: unpacking loki_2.4.7.4.orig.tar.gz dpkg-source: info: unpacking loki_2.4.7.4-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_utils.patch dpkg-source: info: applying 10_lex.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-1ff0bd02-ebe7-43c4-a708-37eb004ae6e5 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package loki dpkg-buildpackage: info: source version 2.4.7.4-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a aclocal: warning: autoconf input should be named 'configure.ac', not 'configure.in' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' dh_auto_configure -- --exec_prefix=/<>/debian/loki/usr ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/mipsel-linux-gnu --libexecdir=\${prefix}/lib/mipsel-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=mipsel-linux-gnu --exec_prefix=/<>/debian/loki/usr configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.mipsel checking whether make sets $(MAKE)... yes checking for DMALLOC library Looking for dmalloc.h in ${prefix}/include and libdmalloc.a in ${prefix}/lib/mipsel-linux-gnu Looking for dmalloc.h in /usr/local/include and libdmalloc.a in /usr/local/lib Looking for dmalloc.h in /usr/include and libdmalloc.a in /usr/lib Looking for dmalloc.h in /sbuild-nonexistent/include and libdmalloc.a in /sbuild-nonexistent/lib checking for mipsel-linux-gnu-gcc... mipsel-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether mipsel-linux-gnu-gcc accepts -g... yes checking for mipsel-linux-gnu-gcc option to accept ISO C89... none needed checking for flex... no checking for lex... no checking for bison... no checking for byacc... no checking for ranlib... /usr/bin/ranlib checking for ar... /usr/bin/ar checking for sed... /bin/sed checking for cp... /bin/cp checking for grep... /bin/grep checking for mv... /bin/mv checking for gzip... /bin/gzip checking for chmod... /bin/chmod checking for perl... /usr/bin/perl checking for makedepend... : checking for sin in -lm... yes checking for accept in -lsocket... no checking how to run the C preprocessor... mipsel-linux-gnu-gcc -E checking for grep that handles long lines and -e... (cached) /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/wait.h that is POSIX.1 compatible... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking values.h usability... yes checking values.h presence... yes checking for values.h... yes checking for unistd.h... (cached) yes checking sys/systeminfo.h usability... no checking sys/systeminfo.h presence... no checking for sys/systeminfo.h... no checking for mode_t... yes checking for off_t... yes checking for pid_t... yes checking for size_t... yes checking for working alloca.h... yes checking for alloca... yes checking for socklen_t... yes checking for an ANSI C-conforming const... yes checking for vprintf... yes checking for _doprnt... no checking for memcpy... yes checking for regcomp... yes checking for strtod... yes checking for strtol... yes checking for gethostname... yes checking for popen... yes checking for snprintf... yes checking for atexit... yes checking for memmove... yes configure: creating ./config.status config.status: creating Makefile config.status: creating libsrc/Makefile config.status: creating prepsrc/Makefile config.status: creating prepsrc/compat/Makefile config.status: creating lokisrc/Makefile config.status: creating test/Makefile config.status: creating utils/Makefile config.status: creating include/config.h configure: WARNING: unrecognized options: --disable-silent-rules, --disable-maintainer-mode, --disable-dependency-tracking make[1]: Leaving directory '/<>' dh_auto_build -a make -j1 make[1]: Entering directory '/<>' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make depend) \ done make[2]: Entering directory '/<>/libsrc' : -I../include/ io_stuff.c ranlib.c genrand.c ran_xtra.c mkbackup.c strsep.c utils.c remember.c peel_utils.c qsort.c min_deg.c bin_tree.c getopt_long.c touch depend make[2]: Leaving directory '/<>/libsrc' make[2]: Entering directory '/<>/prepsrc' : -I../include control_parse.c control_lex.c check_het.c test_het.c prep.c calc_nrm.c write_report.c prep_utils.c gen_elim.c prep_do_peel_op.c write_data.c touch depend make[2]: Leaving directory '/<>/prepsrc' make[2]: Entering directory '/<>/lokisrc' : -I../include loki.c loki_peel.c loki_init.c alloc_loki.c loki_sample.c loki_pen.c loki_tlmoves.c meiosis_scan.c loki_identity.c sample_rand.c sample_effects.c loki_setup.c loki_dump.c sample_cens.c handle_res.c print_data.c calc_var_locus.c loki_output.c sample_nu.c loki_complex_peel.c loki_npl.c loki_simple_sample.c loki_simple_peel.c loki_trait_simple_peel.c loki_trait_simple_sample.c get_par_probs.c read_solar_idfile.c peel_to_par.c update_segs.c param_parse.c param_lex.c read_binfiles.c loki_utils.c kinship.c genedrop.c mat_utils.c output_recomb.c seg_pen.c gen_pen.c loki_ibd.c get_founders.c pass_founder_genes.c touch depend make[2]: Leaving directory '/<>/lokisrc' make[2]: Entering directory '/<>/utils' : -I../include qavg.c hist.c touch depend make[2]: Leaving directory '/<>/utils' touch depend for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[2]: Entering directory '/<>/libsrc' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o io_stuff.o io_stuff.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ranlib.o ranlib.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genrand.o genrand.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ran_xtra.o ran_xtra.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mkbackup.o mkbackup.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o strsep.o strsep.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o utils.o utils.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o remember.o remember.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_utils.o peel_utils.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o qsort.o qsort.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o min_deg.o min_deg.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o bin_tree.o bin_tree.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include/ -Wdate-time -D_FORTIFY_SOURCE=2 -c -o getopt_long.o getopt_long.c /usr/bin/ar cr libgen.a io_stuff.o ranlib.o genrand.o ran_xtra.o mkbackup.o strsep.o utils.o remember.o peel_utils.o qsort.o min_deg.o bin_tree.o getopt_long.o /usr/bin/ranlib libgen.a make[2]: Leaving directory '/<>/libsrc' make[2]: Entering directory '/<>/prepsrc' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_parse.o control_parse.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o control_lex.o control_lex.c lex.yy.c:2062:12: warning: 'input' defined but not used [-Wunused-function] mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_data.o read_data.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o setup_ped.o setup_ped.c setup_ped.c: In function 'setup_pedigree': setup_ped.c:426:13: warning: this statement may fall through [-Wimplicit-fallthrough=] if(i!=id) { ^ setup_ped.c:430:11: note: here default: ^~~~~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o recode_fact.o recode_fact.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanup.o cleanup.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o restrict_data.o restrict_data.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o match_records.o match_records.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o init_fam.o init_fam.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_data.o output_data.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_marker_name.o get_marker_name.c /usr/bin/ar cr libprep.a control_parse.o control_lex.o read_data.o setup_ped.o recode_fact.o cleanup.o restrict_data.o match_records.o init_fam.o output_data.o get_marker_name.o /usr/bin/ranlib libprep.a mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep.o prep.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_nrm.o calc_nrm.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_report.o write_report.c write_report.c: In function 'WriteReport': write_report.c:286:7: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; ^~~~~~~~~~~ write_report.c:300:7: warning: suggest parentheses around operand of '!' or change '&' to '&&' or '!' to '~' [-Wparentheses] if(!elem->type&(ST_MODEL|ST_TRAIT)) continue; ^~~~~~~~~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_utils.o prep_utils.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_elim.o gen_elim.c gen_elim.c: In function 'min_degree': gen_elim.c:1075:24: warning: variable 'best_fg' set but not used [-Wunused-but-set-variable] int x,i1,k1,k2,*trans,best_fg=0; ^~~~~~~ gen_elim.c: In function 'find_sequence': gen_elim.c:1156:17: warning: variable 'mark' set but not used [-Wunused-but-set-variable] struct Marker *mark; ^~~~ gen_elim.c:1155:24: warning: variable 'order1' set but not used [-Wunused-but-set-variable] int *g_perm,*order=0,*order1; ^~~~~~ gen_elim.c: In function 'logical_peel': gen_elim.c:1268:17: warning: variable 'mark' set but not used [-Wunused-but-set-variable] struct Marker *mark; ^~~~ gen_elim.c:1266:27: warning: variable 'pp1' set but not used [-Wunused-but-set-variable] struct Peelseq_Head *pp,*pp1; ^~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o prep_do_peel_op.o prep_do_peel_op.c prep_do_peel_op.c: In function 'do_peel_op': prep_do_peel_op.c:238:19: warning: variable 'fill' set but not used [-Wunused-but-set-variable] double max_terms,fill; ^~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o write_data.o write_data.c (cd compat; make) make[3]: Entering directory '/<>/prepsrc/compat' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o compat.o compat.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../../include -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -c -o merlin.o merlin.c merlin.c: In function 'process_qtdt': merlin.c:59:60: warning: parameter 'error_check' set but not used [-Wunused-but-set-parameter] int process_qtdt(int argc,char *argv[],char **LogFile,int *error_check,loki_time *lt) ~~~~~^~~~~~~~~~~ merlin.c:162:10: warning: this statement may fall through [-Wimplicit-fallthrough=] nmark++; ~~~~~^~ merlin.c:163:5: note: here case 'A': ^~~~ /usr/bin/ar cr libcompat.a compat.o merlin.o /usr/bin/ranlib libcompat.a make[3]: Leaving directory '/<>/prepsrc/compat' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o prep prep.o calc_nrm.o write_report.o prep_utils.o gen_elim.o prep_do_peel_op.o write_data.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lprep -lgen -Lcompat -lcompat -lm make[2]: Leaving directory '/<>/prepsrc' make[2]: Entering directory '/<>/lokisrc' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o param_parse.o param_parse.c mipsel-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DYY_NO_UNPUT param_lex.c param_lex.c: In function 'yy_get_next_buffer': param_lex.c:641:18: warning: comparison of integer expressions of different signedness: 'int' and 'unsigned int' [-Wsign-compare] for ( n = 0; n < max_size && \ ^ param_lex.c:1161:3: note: in expansion of macro 'YY_INPUT' YY_INPUT( (&YY_CURRENT_BUFFER_LVALUE->yy_ch_buf[number_to_move]), ^~~~~~~~ At top level: param_lex.c:1301:16: warning: 'input' defined but not used [-Wunused-function] static int input (void) ^~~~~ param_lex.c:1260:17: warning: 'yyunput' defined but not used [-Wunused-function] static void yyunput (int c, register char * yy_bp ) ^~~~~~~ param_lex.c: In function 'yylex': param_lex.l:91:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] (void)strncpy(linebuf,yytext+1,512); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ param_lex.l:64:11: warning: 'strncpy' specified bound 512 equals destination size [-Wstringop-truncation] (void)strncpy(linebuf,yytext,512); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_binfiles.o read_binfiles.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_utils.o loki_utils.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o kinship.o kinship.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o genedrop.o genedrop.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mat_utils.o mat_utils.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o output_recomb.o output_recomb.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seg_pen.o seg_pen.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o gen_pen.o gen_pen.c gen_pen.c: In function 'calc_degree': gen_pen.c:321:24: warning: variable 'k2' set but not used [-Wunused-but-set-variable] int i1,j,j1,j2,k=0,k1,k2; ^~ mipsel-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -DIBD_COMPRESS_PROG=\"/bin/gzip\" loki_ibd.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_founders.o get_founders.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o pass_founder_genes.o pass_founder_genes.c pass_founder_genes.c: In function 'pass_founder_genes': pass_founder_genes.c:35:40: warning: variable 'locus1' set but not used [-Wunused-but-set-variable] int i,i1,j,s,**genes,**seg,comp,cs,nc,locus1; ^~~~~~ /usr/bin/ar cr libloki.a param_parse.o param_lex.o read_binfiles.o loki_utils.o kinship.o genedrop.o mat_utils.o output_recomb.o seg_pen.o gen_pen.o loki_ibd.o get_founders.o pass_founder_genes.o /usr/bin/ranlib libloki.a mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki.o loki.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_peel.o loki_peel.c loki_peel.c: In function 'peel_locus': loki_peel.c:434:11: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] like1+=z; ~~~~~^~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_init.o loki_init.c loki_init.c: In function 'InitValues': loki_init.c:125:17: warning: this statement may fall through [-Wimplicit-fallthrough=] tau_beta[mod]*=residual_var[mod]; ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~ loki_init.c:126:4: note: here case 1: ^~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o alloc_loki.o alloc_loki.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_sample.o loki_sample.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_pen.o loki_pen.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_tlmoves.o loki_tlmoves.c loki_tlmoves.c: In function 'sample_mpos': loki_tlmoves.c:152:29: warning: variable 'idd' set but not used [-Wunused-but-set-variable] int i,j,locus,k2=-1,k3,ids,idd,sx,**seg,s,s1; ^~~ loki_tlmoves.c:210:26: warning: 'x' may be used uninitialized in this function [-Wmaybe-uninitialized] r=.5*(1.0-exp(.02*(x-x1))); ~~^~~~ loki_tlmoves.c: In function 'get_tl_position': loki_tlmoves.c:623:10: warning: 'z' may be used uninitialized in this function [-Wmaybe-uninitialized] prior[i]+=z; ^~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o meiosis_scan.o meiosis_scan.c meiosis_scan.c: In function 'meiosis_scan': meiosis_scan.c:162:69: warning: variable 'n_comp1' set but not used [-Wunused-but-set-variable] int sex,kid,**seg,**seg1,kid1,nkids1,*kids1,lffg,symflag,n_qtl,qtl,n_comp1; ^~~~~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_identity.o loki_identity.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_rand.o sample_rand.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_effects.o sample_effects.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_setup.o loki_setup.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_dump.o loki_dump.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_cens.o sample_cens.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o handle_res.o handle_res.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o print_data.o print_data.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o calc_var_locus.o calc_var_locus.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_output.o loki_output.c loki_output.c: In function 'OutputSample': loki_output.c:345:3: warning: this statement may fall through [-Wimplicit-fallthrough=] OutputSample_2(fptr,lp); ^~~~~~~~~~~~~~~~~~~~~~~ loki_output.c:346:3: note: here case OUTPUT_VERSION_2_3: ^~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o sample_nu.o sample_nu.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_complex_peel.o loki_complex_peel.c loki_complex_peel.c: In function 'loki_complex_peelop': loki_complex_peel.c:379:9: warning: variable 'max_terms' set but not used [-Wunused-but-set-variable] double max_terms,*tp,prob=0.0,z,p1,Konst=0.0; ^~~~~~~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_npl.o loki_npl.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_sample.o loki_simple_sample.c loki_simple_sample.c: In function 'loki_simple_sample': loki_simple_sample.c:25:51: warning: variable 'tpp2' set but not used [-Wunused-but-set-variable] double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; ^~~~ loki_simple_sample.c:25:45: warning: variable 'tpp1' set but not used [-Wunused-but-set-variable] double *tp,p1,p2,z,z1,prob=0.0,pp[4],*tmp,*tpp1,*tpp2; ^~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_simple_peel.o loki_simple_peel.c loki_simple_peel.c: In function 'loki_simple_peelop': loki_simple_peel.c:601:26: warning: 'cm[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; ~~~~~~~~~~^~~~ loki_simple_peel.c:600:26: warning: 'cm[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] id_set1[i]=(cm[X_PAT]&a1)?l:i1; ~~~~~~~~~~^~~~ loki_simple_peel.c: In function 'loki_simple_peelop_x': loki_simple_peel.c:1278:26: warning: 'cm[1]' may be used uninitialized in this function [-Wmaybe-uninitialized] id_set1[i]=(cm[X_PAT]&a1)?l:i1; ~~~~~~~~~~^~~~ loki_simple_peel.c:1279:26: warning: 'cm[0]' may be used uninitialized in this function [-Wmaybe-uninitialized] id_set2[i]=(cm[X_MAT]&a1)?lump[X_MAT]:i; ~~~~~~~~~~^~~~ mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_peel.o loki_trait_simple_peel.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o loki_trait_simple_sample.o loki_trait_simple_sample.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o get_par_probs.o get_par_probs.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o read_solar_idfile.o read_solar_idfile.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o peel_to_par.o peel_to_par.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -Wdate-time -D_FORTIFY_SOURCE=2 -c -o update_segs.o update_segs.c mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o loki loki.o loki_peel.o loki_init.o alloc_loki.o loki_sample.o loki_pen.o loki_tlmoves.o meiosis_scan.o loki_identity.o sample_rand.o sample_effects.o loki_setup.o loki_dump.o sample_cens.o handle_res.o print_data.o calc_var_locus.o loki_output.o sample_nu.o loki_complex_peel.o loki_npl.o loki_simple_sample.o loki_simple_peel.o loki_trait_simple_peel.o loki_trait_simple_sample.o get_par_probs.o read_solar_idfile.o peel_to_par.o update_segs.o -Wl,-z,relro -Wl,-z,now -L. -L../libsrc -lloki -lgen -lm make[2]: Leaving directory '/<>/lokisrc' make[2]: Entering directory '/<>/utils' mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o qavg qavg.c -Wl,-z,relro -Wl,-z,now -lm mipsel-linux-gnu-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -W -Wall -pedantic -ffloat-store -Wno-long-long -I../include -o hist hist.c -Wl,-z,relro -Wl,-z,now make[2]: Leaving directory '/<>/utils' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_installdirs -a debian/rules override_dh_auto_install-arch make[1]: Entering directory '/<>' dh_auto_install -a make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/<>/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libsrc' make[3]: Entering directory '/<>/prepsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/prepsrc' make[3]: Entering directory '/<>/lokisrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/lokisrc' make[3]: Entering directory '/<>/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/<>/prepsrc' mkdir ../bin for file in prep; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/prepsrc' make[3]: Entering directory '/<>/lokisrc' for file in loki; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/lokisrc' make[3]: Entering directory '/<>/utils' for file in ext count dist freq sort_error; do \ /bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /<>/debian/loki/usr/bin/loki_$file; \ /bin/chmod 755 /<>/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/utils' make[2]: Leaving directory '/<>' make install prefix=/<>/debian/loki/usr bindir=/<>/debian/loki/usr/bin LDFLAGS="-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' for subdir in libsrc prepsrc lokisrc utils; do \ (cd $subdir; make) \ done make[3]: Entering directory '/<>/libsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/libsrc' make[3]: Entering directory '/<>/prepsrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/prepsrc' make[3]: Entering directory '/<>/lokisrc' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/lokisrc' make[3]: Entering directory '/<>/utils' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/utils' for subdir in prepsrc lokisrc utils; do \ (cd $subdir; make install) \ done make[3]: Entering directory '/<>/prepsrc' for file in prep; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/prepsrc' make[3]: Entering directory '/<>/lokisrc' for file in loki; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/lokisrc' make[3]: Entering directory '/<>/utils' for file in ext count dist freq sort_error; do \ /bin/sed 's!+PERLPROG+!/usr/bin/perl!' $file.in > /<>/debian/loki/usr/bin/loki_$file; \ /bin/chmod 755 /<>/debian/loki/usr/bin/loki_$file; \ done for file in qavg hist; do \ /bin/cp $file /<>/debian/loki/usr/bin/; \ /bin/chmod 755 /<>/debian/loki/usr/bin/$file ; \ done make[3]: Leaving directory '/<>/utils' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installman-arch make[1]: Entering directory '/<>' dh_installman -a for man in check_het.1 hist.1 loki_count.1 loki_dist.1 loki_ext.1 loki_freq.1 loki_sort_error.1 prep.1 qavg.1 ; do \ ln -s loki.1.gz debian/loki/usr/share/man/man1/${man}.gz ; \ done make[1]: Leaving directory '/<>' dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package loki: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'loki' in '../loki_2.4.7.4-8_mipsel.deb'. dpkg-deb: building package 'loki-dbgsym' in '../loki-dbgsym_2.4.7.4-8_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../loki_2.4.7.4-8_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-06-02T21:47:29Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-IMdzPQ/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-loki-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ InRelease Get:2 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-IMdzPQ/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-IMdzPQ/apt_archive ./ Sources [747 B] Get:5 copy:/<>/resolver-IMdzPQ/apt_archive ./ Packages [823 B] Fetched 2533 B in 0s (130 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libhtml-template-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclone-perl libdigest-hmac-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-moreutils-perl libmailtools-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline7 libsqlite3-0 libssl1.1 libstruct-dumb-perl libsub-name-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils 0 upgraded, 48 newly installed, 0 to remove and 0 not upgraded. Need to get 7773 kB of archives. After this operation, 20.8 MB of additional disk space will be used. Get:1 copy:/<>/resolver-IMdzPQ/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 7.0-5 [70.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.2-1 [49.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline7 amd64 7.0-5 [151 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.13-2 [512 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.27.2-2 [640 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.13-2 [866 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.34+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.40-1 [222 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.85-2+b1 [308 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.060-3 [207 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.18-1 [88.5 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.19-1 [372 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.39-1 [74.5 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.72-1 [262 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.76+repack-1 [33.1 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.15.0 [1181 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7773 kB in 0s (37.3 MB/s) Selecting previously unselected package netbase. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ loki_2.4.7.4-8_mipsel.changes: ------------------------------ Format: 1.8 Date: Fri, 12 Oct 2018 07:04:58 +0200 Source: loki Binary: loki loki-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 2.4.7.4-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: loki - MCMC linkage analysis on general pedigrees Changes: loki (2.4.7.4-8) unstable; urgency=medium . * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.2.1 * hardening=+all * Fix spelling Checksums-Sha1: c3202c668ccd97d2c19af3bbc86a08fa1e2e84d0 762716 loki-dbgsym_2.4.7.4-8_mipsel.deb 2027562d3c05958c49cda75e95bfddfc250095ec 4418 loki_2.4.7.4-8_mipsel.buildinfo 37c6afbf39a9ab8356b56e7190245f37214f9b23 328800 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328800 loki_2.4.7.4-8_mipsel.deb Checksums-Sha1: c3202c668ccd97d2c19af3bbc86a08fa1e2e84d0 762716 loki-dbgsym_2.4.7.4-8_mipsel.deb 37c6afbf39a9ab8356b56e7190245f37214f9b23 328800 loki_2.4.7.4-8_mipsel.deb Checksums-Sha256: f7074c8b75d0abcdb9b9cb2fc1debfc38a9d1bca99fa5a39f647e47d5e159940 762716 loki-dbgsym_2.4.7.4-8_mipsel.deb b836fd12a3694c98263c65088350b9a79e5d95413f9714af4ee2cf4a479d61ca 328800 loki_2.4.7.4-8_mipsel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 02 Jun 2019 21:47:28 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 10.3), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.31.1-16), binutils-common (= 2.31.1-16), binutils-x86-64-linux-gnu (= 2.31.1-16), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.33.1-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-7), dash (= 0.5.10.2-5), debconf (= 1.5.72), debhelper (= 12.1.1), debianutils (= 4.8.6.1), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.1.2-1), diffutils (= 1:3.7-3), dpkg (= 1.19.6), dpkg-dev (= 1.19.6), dwz (= 0.12-3), fdisk (= 2.33.1-0.1), file (= 1:5.35-4), findutils (= 4.6.0+git+20190209-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-7), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-7), gcc-8-base (= 8.3.0-7), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.56+nmu1), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 8.3.0-7), libatomic1 (= 8.3.0-7), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.4-3), libaudit1 (= 1:2.8.4-3), libbinutils (= 2.31.1-16), libblkid1 (= 2.33.1-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 8.3.0-7), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.6), libelf1 (= 0.176-1.1), libfdisk1 (= 2.33.1-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.1.2-1), libgcc-8-dev (= 8.3.0-7), libgcc1 (= 1:8.3.0-7), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4), libgdbm6 (= 1.18.1-4), libglib2.0-0 (= 2.58.3-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 8.3.0-7), libgpg-error0 (= 1.35-1), libicu63 (= 63.1-6), libisl19 (= 0.20-2), libitm1 (= 8.3.0-7), liblsan0 (= 8.3.0-7), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.35-4), libmagic1 (= 1:5.35-4), libmount1 (= 2.33.1-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-7), libncurses6 (= 6.1+20181013-2), libncursesw6 (= 6.1+20181013-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 8.3.0-7), libseccomp2 (= 2.3.3-4), libselinux1 (= 2.8-1+b1), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.33.1-0.1), libstdc++-8-dev (= 8.3.0-7), libstdc++6 (= 8.3.0-7), libsystemd0 (= 241-5), libtinfo6 (= 6.1+20181013-2), libtool (= 2.4.6-10), libtsan0 (= 8.3.0-7), libubsan1 (= 8.3.0-7), libuchardet0 (= 0.0.6-3), libudev1 (= 241-5), libunistring2 (= 0.9.10-1), libuuid1 (= 2.33.1-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-3), login (= 1:4.5-1.1), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20181013-2), ncurses-bin (= 6.1+20181013-2), patch (= 2.7.6-3), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.93-8), tar (= 1.30+dfsg-6), util-linux (= 2.33.1-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1539320698" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ loki-dbgsym_2.4.7.4-8_mipsel.deb -------------------------------- new Debian package, version 2.0. size 762716 bytes: control archive=696 bytes. 486 bytes, 12 lines control 424 bytes, 4 lines md5sums Package: loki-dbgsym Source: loki Version: 2.4.7.4-8 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 830 Depends: loki (= 2.4.7.4-8) Section: debug Priority: optional Description: debug symbols for loki Build-Ids: 29ae2e8adcc73caea231e336100b9f58948d24c3 3601d1c024832659984e914898345a7245d618c6 3fd6d3490dda12ef6ac46b5d6ebde060ab87aa98 79c13b270830f34897186c171602d2dfbf242143 drwxr-xr-x root/root 0 2018-10-12 05:04 ./ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/.build-id/29/ -rw-r--r-- root/root 321272 2018-10-12 05:04 ./usr/lib/debug/.build-id/29/ae2e8adcc73caea231e336100b9f58948d24c3.debug drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/.build-id/36/ -rw-r--r-- root/root 491444 2018-10-12 05:04 ./usr/lib/debug/.build-id/36/01d1c024832659984e914898345a7245d618c6.debug drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/.build-id/3f/ -rw-r--r-- root/root 10960 2018-10-12 05:04 ./usr/lib/debug/.build-id/3f/d6d3490dda12ef6ac46b5d6ebde060ab87aa98.debug drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/lib/debug/.build-id/79/ -rw-r--r-- root/root 12060 2018-10-12 05:04 ./usr/lib/debug/.build-id/79/c13b270830f34897186c171602d2dfbf242143.debug drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/doc/loki-dbgsym -> loki loki_2.4.7.4-8_mipsel.deb ------------------------- new Debian package, version 2.0. size 328800 bytes: control archive=1212 bytes. 666 bytes, 15 lines control 1071 bytes, 18 lines md5sums Package: loki Version: 2.4.7.4-8 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 883 Depends: libc6 (>= 2.27) Suggests: loki-doc Section: science Priority: optional Description: MCMC linkage analysis on general pedigrees Performs Markov chain Monte Carlo multipoint linkage analysis on large, complex pedigrees. The current package supports analyses on quantitative traits only, although this restriction will be lifted in later versions. Joint estimation of QTL number, position and effects uses Reversible Jump MCMC. It is also possible to perform affected only IBD sharing analyses. drwxr-xr-x root/root 0 2018-10-12 05:04 ./ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/bin/ -rwxr-xr-x root/root 14224 2018-10-12 05:04 ./usr/bin/hist -rwxr-xr-x root/root 498344 2018-10-12 05:04 ./usr/bin/loki -rwxr-xr-x root/root 8539 2018-10-12 05:04 ./usr/bin/loki_count -rwxr-xr-x root/root 8426 2018-10-12 05:04 ./usr/bin/loki_dist -rwxr-xr-x root/root 9834 2018-10-12 05:04 ./usr/bin/loki_ext -rwxr-xr-x root/root 3471 2018-10-12 05:04 ./usr/bin/loki_freq -rwxr-xr-x root/root 1442 2018-10-12 05:04 ./usr/bin/loki_sort_error -rwxr-xr-x root/root 305544 2018-10-12 05:04 ./usr/bin/prep -rwxr-xr-x root/root 14332 2018-10-12 05:04 ./usr/bin/qavg drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/doc/loki/ -rw-r--r-- root/root 1990 2003-04-15 11:49 ./usr/share/doc/loki/README -rw-r--r-- root/root 894 2018-10-12 05:04 ./usr/share/doc/loki/README.Debian -rw-r--r-- root/root 471 2002-04-15 14:06 ./usr/share/doc/loki/README.known_systems -rw-r--r-- root/root 580 2002-07-11 15:06 ./usr/share/doc/loki/README.multiple_records -rw-r--r-- root/root 1910 2002-07-11 15:06 ./usr/share/doc/loki/README.parallel_runs -rw-r--r-- root/root 1912 2018-10-12 05:04 ./usr/share/doc/loki/changelog.Debian.gz -rw-r--r-- root/root 5084 2004-06-04 09:36 ./usr/share/doc/loki/changelog.gz -rw-r--r-- root/root 1943 2018-10-12 05:04 ./usr/share/doc/loki/copyright drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/man/ drwxr-xr-x root/root 0 2018-10-12 05:04 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/check_het.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/hist.1.gz -> loki.1.gz -rw-r--r-- root/root 1005 2018-10-12 05:04 ./usr/share/man/man1/loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/loki_count.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/loki_dist.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/loki_ext.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/loki_freq.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/loki_sort_error.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/prep.1.gz -> loki.1.gz lrwxrwxrwx root/root 0 2018-10-12 05:04 ./usr/share/man/man1/qavg.1.gz -> loki.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 15356 Build-Time: 62 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 25 Job: loki_2.4.7.4-8 Lintian: pass Machine Architecture: amd64 Package: loki Package-Time: 96 Source-Version: 2.4.7.4-8 Space: 15356 Status: successful Version: 2.4.7.4-8 -------------------------------------------------------------------------------- Finished at 2019-06-02T21:47:29Z Build needed 00:01:36, 15356k disk space