sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| macromoleculebuilder 4.2+dfsg-1 (arm64)      Wed, 26 Nov 2025 09:20:37 +0000 |
+==============================================================================+

Package: macromoleculebuilder
Version: 4.2+dfsg-1
Source Version: 4.2+dfsg-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: arm64
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-b0ad012c-72f3-450a-99c5-1e0bcc8edd76' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-xA1ocg/resolver-AT6MFj' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian unstable InRelease [176 kB]
Get:2 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB]
Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-11-26-0204.33-F-2025-11-26-0204.33.pdiff [1118 B]
Get:6 http://localhost:3142/debian unstable/main Sources T-2025-11-26-0804.19-F-2025-11-26-0204.33.pdiff [25.4 kB]
Get:5 http://localhost:3142/debian unstable/contrib Sources T-2025-11-26-0204.33-F-2025-11-26-0204.33.pdiff [1118 B]
Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-11-26-0804.19-F-2025-11-26-0204.33.pdiff [25.9 kB]
Get:6 http://localhost:3142/debian unstable/main Sources T-2025-11-26-0804.19-F-2025-11-26-0204.33.pdiff [25.4 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 Packages T-2025-11-26-0804.19-F-2025-11-26-0204.33.pdiff [25.9 kB]
Get:8 http://localhost:3142/debian unstable/main arm64 Packages [10.2 MB]
Fetched 10.6 MB in 3s (3764 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'macromoleculebuilder' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/macromoleculebuilder.git
Please use:
git clone https://salsa.debian.org/debichem-team/macromoleculebuilder.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2088 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (dsc) [2471 B]
Get:2 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (tar) [2080 kB]
Get:3 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (diff) [5324 B]
Fetched 2088 kB in 8s (254 kB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-xA1ocg/macromoleculebuilder-4.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-xA1ocg' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
Filtered Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [612 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [966 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1010 B]
Fetched 2588 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  architecture-properties:arm64 asciidoc-base asciidoc-common autoconf
  automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils
  cmake cmake-data cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu
  crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
  docbook-xml docbook-xsl dwz fakeroot file freeglut3-dev:arm64
  g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu
  gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base
  gcc-aarch64-linux-gnu gemmi-dev:arm64 gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13t64 libasan8:arm64
  libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross
  libblas-dev:arm64 libblas3:arm64 libbrotli1 libbsd0:arm64 libc6:arm64
  libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2
  libcrypt-dev:arm64 libcrypt1:arm64 libcurl4t64 libdebhelper-perl
  libdrm-amdgpu1:arm64 libdrm-common libdrm2:arm64 libedit2:arm64 libelf1t64
  libelf1t64:arm64 libexpat1 libexpat1:arm64 libfakeroot libffi8 libffi8:arm64
  libfile-stripnondeterminism-perl libgbm1:arm64 libgcc-15-dev:arm64
  libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20
  libgfortran5:arm64 libgl-dev:arm64 libgl1:arm64 libgl1-mesa-dri:arm64
  libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglut-dev:arm64
  libglut3.12:arm64 libglvnd0:arm64 libglx-dev:arm64 libglx-mesa0:arm64
  libglx0:arm64 libgnutls30t64 libgomp1:arm64 libgomp1-arm64-cross
  libgpg-error0 libgssapi-krb5-2 libhwasan0:arm64 libhwasan0-arm64-cross
  libice-dev:arm64 libice6:arm64 libidn2-0 libitm1:arm64 libitm1-arm64-cross
  libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  liblapack-dev:arm64 liblapack3:arm64 libldap2 libllvm19:arm64 liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1t64 libmd0:arm64 libncursesw6
  libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0
  libopengl-dev:arm64 libopengl0:arm64 libopenmm-dev:arm64 libopenmm8.1:arm64
  libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 libpython3-stdlib
  libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librhash1
  librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:arm64
  libseqan2-dev libsimbody-dev:arm64 libsimbody3.7:arm64
  libsimtkmolmodel-dev:arm64 libsimtkmolmodel-plugins:arm64
  libsimtkmolmodel3.1t64:arm64 libsm-dev:arm64 libsm6:arm64 libsqlite3-0
  libssh2-1t64 libstb-dev:arm64 libstb0t64:arm64 libstdc++-15-dev:arm64
  libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross
  libtasn1-6 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5
  libuuid1:arm64 libuv1t64 libvulkan1:arm64 libx11-6 libx11-6:arm64
  libx11-data libx11-dev libx11-dev:arm64 libx11-xcb1:arm64 libxau-dev
  libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri3-0:arm64 libxcb-glx0:arm64
  libxcb-present0:arm64 libxcb-randr0:arm64 libxcb-shm0:arm64
  libxcb-sync1:arm64 libxcb-xfixes0:arm64 libxcb1 libxcb1:arm64 libxcb1-dev
  libxcb1-dev:arm64 libxdmcp-dev libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64
  libxext-dev:arm64 libxext6:arm64 libxfixes-dev:arm64 libxfixes3:arm64
  libxi-dev:arm64 libxi6:arm64 libxml2-16 libxml2-16:arm64 libxml2-utils
  libxmu-dev:arm64 libxmu-headers libxmu6:arm64 libxshmfence1:arm64 libxslt1.1
  libxt-dev:arm64 libxt6t64:arm64 libxxf86vm1:arm64 libz3-4:arm64
  libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types
  mesa-libgallium:arm64 netbase po-debconf procps python3 python3-minimal
  python3.13 python3.13-minimal readline-common sensible-utils sgml-base
  sgml-data tao-pegtl-dev uuid-dev:arm64 x11-common x11proto-dev xml-core
  xorg-sgml-doctools xsltproc xtrans-dev zlib1g:arm64 zlib1g-dev:arm64
Suggested packages:
  asciidoc-doc docbook-utils source-highlight autoconf-archive gnu-standards
  autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build
  gcc-15-locales cpp-15-doc cpp-doc dh-make docbook docbook-defguide
  docbook-dsssl dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf
  | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java
  libxalan2-java libxslthl-java xalan gcc-15-doc manpages-dev flex bison
  gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  gnulib-l10n groff lrzip liblapack-doc:arm64 glibc-doc:arm64 libc-l10n:arm64
  locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64
  rng-tools gnutls-bin krb5-doc krb5-user libice-doc:arm64 lm-sensors
  lm-sensors:arm64 libsm-doc:arm64 libstdc++-15-doc:arm64 libtool-doc gfortran
  | fortran95-compiler uuid-runtime:arm64 libx11-doc libx11-doc:arm64
  libxcb-doc libxcb-doc:arm64 libxext-doc:arm64 libxt-doc:arm64 m4-doc
  apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc
  sgml-base-doc perlsgml w3-recs opensp
Recommended packages:
  xmlto curl | wget | lynx libidn2-0:arm64 ca-certificates
  libarchive-cpio-perl libgpg-error-l10n krb5-locales libldap-common libgpm2
  publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers:arm64
  | vulkan-icd:arm64 libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
  architecture-properties:arm64 asciidoc-base asciidoc-common autoconf
  automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils
  cmake cmake-data cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu
  crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism
  docbook-xml docbook-xsl dwz fakeroot file freeglut3-dev:arm64
  g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-15-aarch64-linux-gnu
  gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base
  gcc-aarch64-linux-gnu gemmi-dev:arm64 gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13t64 libasan8:arm64
  libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross
  libblas-dev:arm64 libblas3:arm64 libbrotli1 libbsd0:arm64 libc6:arm64
  libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2
  libcrypt-dev:arm64 libcrypt1:arm64 libcurl4t64 libdebhelper-perl
  libdrm-amdgpu1:arm64 libdrm-common libdrm2:arm64 libedit2:arm64 libelf1t64
  libelf1t64:arm64 libexpat1 libexpat1:arm64 libfakeroot libffi8 libffi8:arm64
  libfile-stripnondeterminism-perl libgbm1:arm64 libgcc-15-dev:arm64
  libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgcrypt20
  libgfortran5:arm64 libgl-dev:arm64 libgl1:arm64 libgl1-mesa-dri:arm64
  libglu1-mesa:arm64 libglu1-mesa-dev:arm64 libglut-dev:arm64
  libglut3.12:arm64 libglvnd0:arm64 libglx-dev:arm64 libglx-mesa0:arm64
  libglx0:arm64 libgnutls30t64 libgomp1:arm64 libgomp1-arm64-cross
  libgpg-error0 libgssapi-krb5-2 libhwasan0:arm64 libhwasan0-arm64-cross
  libice-dev:arm64 libice6:arm64 libidn2-0 libitm1:arm64 libitm1-arm64-cross
  libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0
  liblapack-dev:arm64 liblapack3:arm64 libldap2 libllvm19:arm64 liblsan0:arm64
  liblsan0-arm64-cross libmagic-mgc libmagic1t64 libmd0:arm64 libncursesw6
  libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0
  libopengl-dev:arm64 libopengl0:arm64 libopenmm-dev:arm64 libopenmm8.1:arm64
  libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 libpython3-stdlib
  libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librhash1
  librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:arm64
  libseqan2-dev libsimbody-dev:arm64 libsimbody3.7:arm64
  libsimtkmolmodel-dev:arm64 libsimtkmolmodel-plugins:arm64
  libsimtkmolmodel3.1t64:arm64 libsm-dev:arm64 libsm6:arm64 libsqlite3-0
  libssh2-1t64 libstb-dev:arm64 libstb0t64:arm64 libstdc++-15-dev:arm64
  libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross
  libtasn1-6 libtinfo6:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross
  libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunistring5
  libuuid1:arm64 libuv1t64 libvulkan1:arm64 libx11-6 libx11-6:arm64
  libx11-data libx11-dev libx11-dev:arm64 libx11-xcb1:arm64 libxau-dev
  libxau-dev:arm64 libxau6 libxau6:arm64 libxcb-dri3-0:arm64 libxcb-glx0:arm64
  libxcb-present0:arm64 libxcb-randr0:arm64 libxcb-shm0:arm64
  libxcb-sync1:arm64 libxcb-xfixes0:arm64 libxcb1 libxcb1:arm64 libxcb1-dev
  libxcb1-dev:arm64 libxdmcp-dev libxdmcp-dev:arm64 libxdmcp6 libxdmcp6:arm64
  libxext-dev:arm64 libxext6:arm64 libxfixes-dev:arm64 libxfixes3:arm64
  libxi-dev:arm64 libxi6:arm64 libxml2-16 libxml2-16:arm64 libxml2-utils
  libxmu-dev:arm64 libxmu-headers libxmu6:arm64 libxshmfence1:arm64 libxslt1.1
  libxt-dev:arm64 libxt6t64:arm64 libxxf86vm1:arm64 libz3-4:arm64
  libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db media-types
  mesa-libgallium:arm64 netbase po-debconf procps python3 python3-minimal
  python3.13 python3.13-minimal readline-common
  sbuild-build-depends-main-dummy:arm64 sensible-utils sgml-base sgml-data
  tao-pegtl-dev uuid-dev:arm64 x11-common x11proto-dev xml-core
  xorg-sgml-doctools xsltproc xtrans-dev zlib1g:arm64 zlib1g-dev:arm64
0 upgraded, 232 newly installed, 0 to remove and 0 not upgraded.
Need to get 197 MB of archives.
After this operation, 872 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1040 B]
Get:2 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB]
Get:3 http://localhost:3142/debian unstable/main arm64 gcc-15-base arm64 15.2.0-9 [53.7 kB]
Get:4 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-9 [53.4 kB]
Get:5 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.41-12 [2489 kB]
Get:6 http://localhost:3142/debian unstable/main arm64 libexpat1 arm64 2.7.3-1 [96.5 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20251123-1 [136 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:33 http://localhost:3142/debian unstable/main arm64 architecture-properties arm64 0.2.6 [2336 B]
Get:34 http://localhost:3142/debian unstable/main amd64 asciidoc-common all 10.2.1-1 [104 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 xml-core all 0.19 [20.1 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 docbook-xsl all 1.79.2+dfsg-8 [1214 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-1 [641 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libxml2-utils amd64 2.15.1+dfsg-1 [123 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.56-2 [89.1 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3 [871 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.3 [158 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 xsltproc amd64 1.1.43-0.3 [43.7 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 asciidoc-base all 10.2.1-1 [84.9 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.45.50.20251125-1 [1739 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B]
Get:60 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.11-3 [1509 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-3 [409 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-5 [82.6 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1 [135 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB]
Get:80 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu-base amd64 15.2.0-7cross1 [53.5 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 cpp-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [12.3 MB]
Get:82 http://localhost:3142/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:15.2.0-4 [5292 B]
Get:83 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-7cross1 [48.9 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libc6-arm64-cross all 2.41-11cross1 [1168 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libgcc-s1-arm64-cross all 15.2.0-7cross1 [53.4 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libgomp1-arm64-cross all 15.2.0-7cross1 [93.7 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libitm1-arm64-cross all 15.2.0-7cross1 [25.9 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libatomic1-arm64-cross all 15.2.0-7cross1 [10.1 kB]
Get:89 http://localhost:3142/debian unstable/main amd64 libasan8-arm64-cross all 15.2.0-7cross1 [442 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 liblsan0-arm64-cross all 15.2.0-7cross1 [210 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libtsan2-arm64-cross all 15.2.0-7cross1 [426 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libstdc++6-arm64-cross all 15.2.0-7cross1 [559 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libubsan1-arm64-cross all 15.2.0-7cross1 [193 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libhwasan0-arm64-cross all 15.2.0-7cross1 [266 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-arm64-cross all 15.2.0-7cross1 [2537 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 gcc-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [23.7 MB]
Get:97 http://localhost:3142/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:15.2.0-4 [1444 B]
Get:98 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-arm64-cross all 6.12.38-1cross1 [2446 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libc6-dev-arm64-cross all 2.41-11cross1 [1617 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-arm64-cross all 15.2.0-7cross1 [2699 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 g++-15-aarch64-linux-gnu amd64 15.2.0-7cross1 [13.3 MB]
Get:102 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:15.2.0-4 [1200 B]
Get:103 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B]
Get:104 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B]
Get:110 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 sgml-data all 2.0.11+nmu1 [179 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 docbook-xml all 4.5-13 [77.4 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB]
Get:120 http://localhost:3142/debian unstable/main arm64 libglvnd0 arm64 1.7.0-1+b2 [41.6 kB]
Get:121 http://localhost:3142/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB]
Get:122 http://localhost:3142/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB]
Get:123 http://localhost:3142/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:125 http://localhost:3142/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.127-1 [9060 B]
Get:127 http://localhost:3142/debian unstable/main arm64 libdrm2 arm64 2.4.127-1 [38.3 kB]
Get:128 http://localhost:3142/debian unstable/main arm64 libx11-xcb1 arm64 2:1.8.12-1 [247 kB]
Get:129 http://localhost:3142/debian unstable/main arm64 libxcb-dri3-0 arm64 1.17.0-2+b1 [107 kB]
Get:130 http://localhost:3142/debian unstable/main arm64 libxcb-glx0 arm64 1.17.0-2+b1 [123 kB]
Get:131 http://localhost:3142/debian unstable/main arm64 libxcb-present0 arm64 1.17.0-2+b1 [106 kB]
Get:132 http://localhost:3142/debian unstable/main arm64 libxcb-shm0 arm64 1.17.0-2+b1 [105 kB]
Get:133 http://localhost:3142/debian unstable/main arm64 libxcb-xfixes0 arm64 1.17.0-2+b1 [110 kB]
Get:134 http://localhost:3142/debian unstable/main arm64 libxext6 arm64 2:1.3.4-1+b3 [49.2 kB]
Get:135 http://localhost:3142/debian unstable/main arm64 libxxf86vm1 arm64 1:1.1.4-2 [19.5 kB]
Get:136 http://localhost:3142/debian unstable/main arm64 libdrm-amdgpu1 arm64 2.4.127-1 [22.7 kB]
Get:137 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-2 [260 kB]
Get:138 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB]
Get:139 http://localhost:3142/debian unstable/main arm64 libelf1t64 arm64 0.194-1 [184 kB]
Get:140 http://localhost:3142/debian unstable/main arm64 libmd0 arm64 1.1.0-2+b1 [33.7 kB]
Get:141 http://localhost:3142/debian unstable/main arm64 libbsd0 arm64 0.12.2-2 [129 kB]
Get:142 http://localhost:3142/debian unstable/main arm64 libtinfo6 arm64 6.5+20251123-1 [345 kB]
Get:143 http://localhost:3142/debian unstable/main arm64 libedit2 arm64 3.1-20250104-1 [89.3 kB]
Get:144 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB]
Get:145 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 15.2.0-9 [647 kB]
Get:146 http://localhost:3142/debian unstable/main arm64 libxml2-16 arm64 2.15.1+dfsg-1 [591 kB]
Get:147 http://localhost:3142/debian unstable/main arm64 libz3-4 arm64 4.13.3-1 [7507 kB]
Get:148 http://localhost:3142/debian unstable/main arm64 libllvm19 arm64 1:19.1.7-18 [23.4 MB]
Get:149 http://localhost:3142/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB]
Get:150 http://localhost:3142/debian unstable/main arm64 libsensors5 arm64 1:3.6.2-2 [36.4 kB]
Get:151 http://localhost:3142/debian unstable/main arm64 libxcb-randr0 arm64 1.17.0-2+b1 [117 kB]
Get:152 http://localhost:3142/debian unstable/main arm64 libxcb-sync1 arm64 1.17.0-2+b1 [109 kB]
Get:153 http://localhost:3142/debian unstable/main arm64 libxshmfence1 arm64 1.3.3-1 [11.1 kB]
Get:154 http://localhost:3142/debian unstable/main arm64 mesa-libgallium arm64 25.2.7-1 [10.3 MB]
Get:155 http://localhost:3142/debian unstable/main arm64 libgbm1 arm64 25.2.7-1 [45.2 kB]
Get:156 http://localhost:3142/debian unstable/main arm64 libvulkan1 arm64 1.4.328.1-1 [139 kB]
Get:157 http://localhost:3142/debian unstable/main arm64 libgl1-mesa-dri arm64 25.2.7-1 [46.9 kB]
Get:158 http://localhost:3142/debian unstable/main arm64 libglx-mesa0 arm64 25.2.7-1 [108 kB]
Get:159 http://localhost:3142/debian unstable/main arm64 libglx0 arm64 1.7.0-1+b2 [31.1 kB]
Get:160 http://localhost:3142/debian unstable/main arm64 libgl1 arm64 1.7.0-1+b2 [90.9 kB]
Get:161 http://localhost:3142/debian unstable/main arm64 libxi6 arm64 2:1.8.2-1 [77.8 kB]
Get:162 http://localhost:3142/debian unstable/main arm64 libglut3.12 arm64 3.4.0-6 [135 kB]
Get:163 http://localhost:3142/debian unstable/main arm64 libopengl0 arm64 1.7.0-1+b2 [32.1 kB]
Get:164 http://localhost:3142/debian unstable/main arm64 libglu1-mesa arm64 9.0.2-1.1+b3 [162 kB]
Get:165 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:166 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB]
Get:167 http://localhost:3142/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB]
Get:168 http://localhost:3142/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB]
Get:169 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB]
Get:170 http://localhost:3142/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB]
Get:171 http://localhost:3142/debian unstable/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB]
Get:172 http://localhost:3142/debian unstable/main arm64 libglx-dev arm64 1.7.0-1+b2 [15.8 kB]
Get:173 http://localhost:3142/debian unstable/main arm64 libgl-dev arm64 1.7.0-1+b2 [101 kB]
Get:174 http://localhost:3142/debian unstable/main arm64 libopengl-dev arm64 1.7.0-1+b2 [5376 B]
Get:175 http://localhost:3142/debian unstable/main arm64 libglu1-mesa-dev arm64 9.0.2-1.1+b3 [203 kB]
Get:176 http://localhost:3142/debian unstable/main arm64 libxext-dev arm64 2:1.3.4-1+b3 [105 kB]
Get:177 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB]
Get:178 http://localhost:3142/debian unstable/main arm64 libice6 arm64 2:1.1.1-1 [62.1 kB]
Get:179 http://localhost:3142/debian unstable/main arm64 libuuid1 arm64 2.41.2-4 [37.8 kB]
Get:180 http://localhost:3142/debian unstable/main arm64 libsm6 arm64 2:1.2.6-1 [36.4 kB]
Get:181 http://localhost:3142/debian unstable/main arm64 libxt6t64 arm64 1:1.2.1-1.3 [182 kB]
Get:182 http://localhost:3142/debian unstable/main arm64 libice-dev arm64 2:1.1.1-1 [73.0 kB]
Get:183 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.5.1-1 [93.9 kB]
Get:184 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.5.1-1 [126 kB]
Get:185 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.41-12 [1621 kB]
Get:186 http://localhost:3142/debian unstable/main arm64 uuid-dev arm64 2.41.2-4 [49.8 kB]
Get:187 http://localhost:3142/debian unstable/main arm64 libsm-dev arm64 2:1.2.6-1 [40.2 kB]
Get:188 http://localhost:3142/debian unstable/main arm64 libxt-dev arm64 1:1.2.1-1.3 [415 kB]
Get:189 http://localhost:3142/debian unstable/main arm64 libglut-dev arm64 3.4.0-6 [163 kB]
Get:190 http://localhost:3142/debian unstable/main arm64 freeglut3-dev arm64 3.4.0-6 [53.6 kB]
Get:191 http://localhost:3142/debian unstable/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB]
Get:192 http://localhost:3142/debian unstable/main arm64 gemmi-dev arm64 0.7.1+ds-2 [1104 kB]
Get:193 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 15.2.0-9 [2600 kB]
Get:194 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 15.2.0-9 [9840 B]
Get:195 http://localhost:3142/debian unstable/main arm64 libblas3 arm64 3.12.1-7 [135 kB]
Get:196 http://localhost:3142/debian unstable/main arm64 libblas-dev arm64 3.12.1-7 [145 kB]
Get:197 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 15.2.0-9 [126 kB]
Get:198 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 15.2.0-9 [24.1 kB]
Get:199 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 15.2.0-9 [1193 kB]
Get:200 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 15.2.0-9 [2401 kB]
Get:201 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 15.2.0-9 [1064 kB]
Get:202 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 15.2.0-9 [1480 kB]
Get:203 http://localhost:3142/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-9 [2373 kB]
Get:204 http://localhost:3142/debian unstable/main arm64 libgfortran5 arm64 15.2.0-9 [371 kB]
Get:205 http://localhost:3142/debian unstable/main arm64 liblapack3 arm64 3.12.1-7 [1846 kB]
Get:206 http://localhost:3142/debian unstable/main arm64 liblapack-dev arm64 3.12.1-7 [3829 kB]
Get:207 http://localhost:3142/debian unstable/main arm64 libopenmm8.1 arm64 8.1.2+dfsg-12 [886 kB]
Get:208 http://localhost:3142/debian unstable/main arm64 libopenmm-dev arm64 8.1.2+dfsg-12 [326 kB]
Get:209 http://localhost:3142/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB]
Get:210 http://localhost:3142/debian unstable/main arm64 libxfixes3 arm64 1:6.0.0-2+b4 [20.5 kB]
Get:211 http://localhost:3142/debian unstable/main arm64 libxfixes-dev arm64 1:6.0.0-2+b4 [22.9 kB]
Get:212 http://localhost:3142/debian unstable/main arm64 libxi-dev arm64 2:1.8.2-1 [240 kB]
Get:213 http://localhost:3142/debian unstable/main arm64 libxmu6 arm64 2:1.1.3-3+b4 [55.7 kB]
Get:214 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:215 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:216 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:217 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get:218 http://localhost:3142/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
Get:219 http://localhost:3142/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
Get:220 http://localhost:3142/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
Get:221 http://localhost:3142/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB]
Get:222 http://localhost:3142/debian unstable/main amd64 libxmu-headers all 2:1.1.3-3 [68.5 kB]
Get:223 http://localhost:3142/debian unstable/main arm64 libxmu-dev arm64 2:1.1.3-3+b4 [64.1 kB]
Get:224 http://localhost:3142/debian unstable/main arm64 libsimbody3.7 arm64 3.7+dfsg-5 [2737 kB]
Get:225 http://localhost:3142/debian unstable/main arm64 libsimbody-dev arm64 3.7+dfsg-5 [2727 kB]
Get:226 http://localhost:3142/debian unstable/main arm64 libsimtkmolmodel3.1t64 arm64 3.1.0-4.1+b4 [483 kB]
Get:227 http://localhost:3142/debian unstable/main arm64 libsimtkmolmodel-dev arm64 3.1.0-4.1+b4 [1864 kB]
Get:228 http://localhost:3142/debian unstable/main arm64 libsimtkmolmodel-plugins arm64 3.1.0-4.1+b4 [17.1 kB]
Get:229 http://localhost:3142/debian unstable/main arm64 libstb0t64 arm64 0.0~git20250907.fede005+ds-1 [210 kB]
Get:230 http://localhost:3142/debian unstable/main arm64 libstb-dev arm64 0.0~git20250907.fede005+ds-1 [651 kB]
Get:231 http://localhost:3142/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-9 [2348 kB]
Get:232 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB]
Preconfiguring packages ...
Fetched 197 MB in 5s (38.8 MB/s)
Selecting previously unselected package libexpat1:amd64.
(Reading database ... 12910 files and directories currently installed.)
Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.7.3-1) ...
Selecting previously unselected package gcc-15-base:arm64.
Preparing to unpack .../gcc-15-base_15.2.0-9_arm64.deb ...
Unpacking gcc-15-base:arm64 (15.2.0-9) ...
Selecting previously unselected package libgcc-s1:arm64.
Preparing to unpack .../libgcc-s1_15.2.0-9_arm64.deb ...
Unpacking libgcc-s1:arm64 (15.2.0-9) ...
Selecting previously unselected package libc6:arm64.
Preparing to unpack .../libc6_2.41-12_arm64.deb ...
Unpacking libc6:arm64 (2.41-12) ...
Setting up gcc-15-base:arm64 (15.2.0-9) ...
Setting up libgcc-s1:arm64 (15.2.0-9) ...
Setting up libc6:arm64 (2.41-12) ...
Selecting previously unselected package libexpat1:arm64.
(Reading database ... 13204 files and directories currently installed.)
Preparing to unpack .../libexpat1_2.7.3-1_arm64.deb ...
Unpacking libexpat1:arm64 (2.7.3-1) ...
Selecting previously unselected package libpython3.13-minimal:amd64.
Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ...
Unpacking python3.13-minimal (3.13.9-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.9-1) ...
Setting up libexpat1:amd64 (2.7.3-1) ...
Setting up libexpat1:arm64 (2.7.3-1) ...
Setting up python3.13-minimal (3.13.9-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13533 files and directories currently installed.)
Preparing to unpack .../00-python3-minimal_3.13.7-1_amd64.deb ...
Unpacking python3-minimal (3.13.7-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../01-media-types_14.0.0_all.deb ...
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Setting up media-types (14.0.0) ...
Setting up libpipeline1:amd64 (1.5.8-2) ...
Setting up libzstd1:arm64 (1.5.7+dfsg-2) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxau6:arm64 (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libxdmcp6:arm64 (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-6) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libxcb1:arm64 (1.17.0-2+b1) ...
Setting up libxcb-xfixes0:arm64 (1.17.0-2+b1) ...
Setting up gcc-15-aarch64-linux-gnu-base:amd64 (15.2.0-7cross1) ...
Setting up bsdextrautils (2.41.2-4) ...
Setting up libgpg-error0:amd64 (1.56-2) ...
Setting up libmagic-mgc (1:5.46-5) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up architecture-properties:arm64 (0.2.6) ...
Setting up libglvnd0:arm64 (1.7.0-1+b2) ...
Setting up libxml2-16:amd64 (2.15.1+dfsg-1) ...
Setting up libxcb-glx0:arm64 (1.17.0-2+b1) ...
Setting up libdebhelper-perl (13.28) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libsqlite3-0:amd64 (3.46.1-8) ...
Setting up libuv1t64:amd64 (1.51.0-2) ...
Setting up libmagic1t64:amd64 (1:5.46-5) ...
Setting up x11-common (1:7.7+26) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libsensors-config (1:3.6.2-2) ...
Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ...
Setting up gettext-base (0.23.2-1) ...
Setting up m4 (1.4.20-2) ...
Setting up libgcrypt20:amd64 (1.11.2-3) ...
Setting up binutils-aarch64-linux-gnu (2.45.50.20251125-1) ...
Setting up zlib1g:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libcrypt1:arm64 (1:4.5.1-1) ...
Setting up libxcb-shm0:arm64 (1.17.0-2+b1) ...
Setting up libcom-err2:amd64 (1.47.2-3+b3) ...
Setting up file (1:5.46-5) ...
Setting up libgomp1:arm64 (15.2.0-9) ...
Setting up libopengl0:arm64 (1.7.0-1+b2) ...
Setting up libfakeroot:amd64 (1.37.1.2-1) ...
Setting up libelf1t64:amd64 (0.194-1) ...
Setting up libelf1t64:arm64 (0.194-1) ...
Setting up libkrb5support0:amd64 (1.22.1-2) ...
Setting up libseqan2-dev (2.4.0+dfsg-16) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ...
Setting up fakeroot (1.37.1.2-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libxcb-present0:arm64 (1.17.0-2+b1) ...
Setting up xtrans-dev (1.6.0-1) ...
Setting up autotools-dev (20240727.1) ...
Setting up libblas3:arm64 (3.12.1-7) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so.3 to provide /usr/lib/aarch64-linux-gnu/libblas.so.3 (libblas.so.3-aarch64-linux-gnu) in auto mode
Setting up libx11-data (2:1.8.12-1) ...
Setting up libxcb-sync1:arm64 (1.17.0-2+b1) ...
Setting up libjsoncpp26:amd64 (1.9.6-5) ...
Setting up libc6-arm64-cross (2.41-11cross1) ...
Setting up libproc2-0:amd64 (2:4.0.4-9) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up libatomic1:arm64 (15.2.0-9) ...
Setting up libuuid1:arm64 (2.41.2-4) ...
Setting up autopoint (0.23.2-1) ...
Setting up libsensors5:arm64 (1:3.6.2-2) ...
Setting up libncursesw6:amd64 (6.5+20251123-1) ...
Setting up libk5crypto3:amd64 (1.22.1-2) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ...
Setting up libgfortran5:arm64 (15.2.0-9) ...
Setting up libvulkan1:arm64 (1.4.328.1-1) ...
Setting up autoconf (2.72-3.1) ...
Setting up libnghttp3-9:amd64 (1.12.0-1) ...
Setting up linux-libc-dev-arm64-cross (6.12.38-1cross1) ...
Setting up libffi8:amd64 (3.5.2-2) ...
Setting up libffi8:arm64 (3.5.2-2) ...
Setting up dwz (0.16-2) ...
Setting up libmd0:arm64 (1.1.0-2+b1) ...
Setting up sensible-utils (0.0.26) ...
Setting up libxshmfence1:arm64 (1.3.3-1) ...
Setting up libhwasan0:arm64 (15.2.0-9) ...
Setting up libcrypt-dev:arm64 (1:4.5.1-1) ...
Setting up libxcb-randr0:arm64 (1.17.0-2+b1) ...
Setting up libasan8:arm64 (15.2.0-9) ...
Setting up libuchardet0:amd64 (0.0.8-2) ...
Setting up procps (2:4.0.4-9) ...
Setting up libxslt1.1:amd64 (1.1.43-0.3) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up libc6-dev:arm64 (2.41-12) ...
Setting up libx11-6:amd64 (2:1.8.12-1) ...
Setting up libx11-6:arm64 (2:1.8.12-1) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.5) ...
Setting up libngtcp2-16:amd64 (1.16.0-1) ...
Setting up sgml-base (1.31+nmu1) ...
Setting up cmake-data (4.1.1+really3.31.6-2) ...
Setting up librhash1:amd64 (1.4.6-1.1) ...
Setting up libkrb5-3:amd64 (1.22.1-2) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libtsan2:arm64 (15.2.0-9) ...
Setting up libopengl-dev:arm64 (1.7.0-1+b2) ...
Setting up gcc-15-cross-base (15.2.0-7cross1) ...
Setting up libstb0t64:arm64 (0.0~git20250907.fede005+ds-1) ...
Setting up libbsd0:arm64 (0.12.2-2) ...
Setting up libdrm-common (2.4.127-1) ...
Setting up libarchive13t64:amd64 (3.7.4-4+b1) ...
Setting up readline-common (8.3-3) ...
Setting up libldap2:amd64 (2.6.10+dfsg-1) ...
Setting up libstdc++6:arm64 (15.2.0-9) ...
Setting up liblsan0:arm64 (15.2.0-9) ...
Setting up libblas-dev:arm64 (3.12.1-7) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/blas/libblas.so to provide /usr/lib/aarch64-linux-gnu/libblas.so (libblas.so-aarch64-linux-gnu) in auto mode
Setting up tao-pegtl-dev (3.2.7-1) ...
Setting up libitm1:arm64 (15.2.0-9) ...
Setting up libtinfo6:arm64 (6.5+20251123-1) ...
Setting up libgcc-s1-arm64-cross (15.2.0-7cross1) ...
Setting up libatomic1-arm64-cross (15.2.0-7cross1) ...
Setting up automake (1:1.18.1-3) ...
update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.15.0-1) ...
Setting up libxcb-dri3-0:arm64 (1.17.0-2+b1) ...
Setting up liblsan0-arm64-cross (15.2.0-7cross1) ...
Setting up libx11-xcb1:arm64 (2:1.8.12-1) ...
Setting up cpp-15-aarch64-linux-gnu (15.2.0-7cross1) ...
Setting up libice6:arm64 (2:1.1.1-1) ...
Setting up libgomp1-arm64-cross (15.2.0-7cross1) ...
Setting up liblapack3:arm64 (3.12.1-7) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/aarch64-linux-gnu/liblapack.so.3 (liblapack.so.3-aarch64-linux-gnu) in auto mode
Setting up gettext (0.23.2-1) ...
Setting up libxau-dev:amd64 (1:1.0.11-1) ...
Setting up libxau-dev:arm64 (1:1.0.11-1) ...
Setting up libice-dev:arm64 (2:1.1.1-1) ...
Setting up libtool (2.5.4-7) ...
Setting up libxml2-16:arm64 (2.15.1+dfsg-1) ...
Setting up libedit2:arm64 (3.1-20250104-1) ...
Setting up gemmi-dev:arm64 (0.7.1+ds-2) ...
Setting up xsltproc (1.1.43-0.3) ...
Setting up libxext6:arm64 (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.8-4) ...
Setting up libhwasan0-arm64-cross (15.2.0-7cross1) ...
Setting up libc6-dev-arm64-cross (2.41-11cross1) ...
Setting up libxxf86vm1:arm64 (1:1.1.4-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up libstdc++6-arm64-cross (15.2.0-7cross1) ...
Setting up dh-autoreconf (21) ...
Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ...
Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ...
Setting up cpp-aarch64-linux-gnu (4:15.2.0-4) ...
Setting up libz3-4:arm64 (4.13.3-1) ...
Setting up libxfixes3:arm64 (1:6.0.0-2+b4) ...
Setting up uuid-dev:arm64 (2.41.2-4) ...
Setting up libp11-kit0:amd64 (0.25.10-1) ...
Setting up liblapack-dev:arm64 (3.12.1-7) ...
update-alternatives: using /usr/lib/aarch64-linux-gnu/lapack/liblapack.so to provide /usr/lib/aarch64-linux-gnu/liblapack.so (liblapack.so-aarch64-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ...
Setting up libitm1-arm64-cross (15.2.0-7cross1) ...
Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ...
Setting up libreadline8t64:amd64 (8.3-3) ...
Setting up libubsan1:arm64 (15.2.0-9) ...
Setting up dh-strip-nondeterminism (1.15.0-1) ...
Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libdrm2:arm64 (2.4.127-1) ...
Setting up libstb-dev:arm64 (0.0~git20250907.fede005+ds-1) ...
Setting up groff-base (1.23.0-9) ...
Setting up xml-core (0.19) ...
Setting up libglu1-mesa:arm64 (9.0.2-1.1+b3) ...
Setting up libasan8-arm64-cross (15.2.0-7cross1) ...
Setting up libxml2-utils (2.15.1+dfsg-1) ...
Setting up libopenmm8.1:arm64 (8.1.2+dfsg-12) ...
Setting up libsm6:arm64 (2:1.2.6-1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ...
Setting up libtsan2-arm64-cross (15.2.0-7cross1) ...
Setting up libpython3-stdlib:amd64 (3.13.7-1) ...
Setting up libdrm-amdgpu1:arm64 (2.4.127-1) ...
Setting up libgnutls30t64:amd64 (3.8.11-3) ...
Setting up libllvm19:arm64 (1:19.1.7-18) ...
Setting up mesa-libgallium:arm64 (25.2.7-1) ...
Setting up libgcc-15-dev:arm64 (15.2.0-9) ...
Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ...
Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ...
Setting up libubsan1-arm64-cross (15.2.0-7cross1) ...
Setting up libxi6:arm64 (2:1.8.2-1) ...
Setting up libgbm1:arm64 (25.2.7-1) ...
Setting up python3.13 (3.13.9-1) ...
Setting up libsm-dev:arm64 (2:1.2.6-1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:arm64 (25.2.7-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libx11-dev:amd64 (2:1.8.12-1) ...
Setting up libx11-dev:arm64 (2:1.8.12-1) ...
Setting up python3 (3.13.7-1) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libopenmm-dev:arm64 (8.1.2+dfsg-12) ...
Setting up libxfixes-dev:arm64 (1:6.0.0-2+b4) ...
Setting up asciidoc-common (10.2.1-1) ...
Setting up libstdc++-15-dev:arm64 (15.2.0-9) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ...
Setting up libgcc-15-dev-arm64-cross (15.2.0-7cross1) ...
Setting up libstdc++-15-dev-arm64-cross (15.2.0-7cross1) ...
Setting up libxt6t64:arm64 (1:1.2.1-1.3) ...
Setting up libxext-dev:arm64 (2:1.3.4-1+b3) ...
Setting up libxi-dev:arm64 (2:1.8.2-1) ...
Setting up libxmu-headers (2:1.1.3-3) ...
Setting up libxmu6:arm64 (2:1.1.3-3+b4) ...
Setting up libglx-mesa0:arm64 (25.2.7-1) ...
Setting up gcc-15-aarch64-linux-gnu (15.2.0-7cross1) ...
Setting up libglx0:arm64 (1.7.0-1+b2) ...
Setting up libcurl4t64:amd64 (8.17.0-3) ...
Setting up debhelper (13.28) ...
Setting up libgl1:arm64 (1.7.0-1+b2) ...
Setting up g++-15-aarch64-linux-gnu (15.2.0-7cross1) ...
Setting up libxt-dev:arm64 (1:1.2.1-1.3) ...
Setting up libglut3.12:arm64 (3.4.0-6) ...
Setting up libsimbody3.7:arm64 (3.7+dfsg-5) ...
Setting up cmake (4.1.1+really3.31.6-2) ...
Setting up libglx-dev:arm64 (1.7.0-1+b2) ...
Setting up libgl-dev:arm64 (1.7.0-1+b2) ...
Setting up gcc-aarch64-linux-gnu (4:15.2.0-4) ...
Setting up libsimtkmolmodel3.1t64:arm64 (3.1.0-4.1+b4) ...
Setting up libxmu-dev:arm64 (2:1.1.3-3+b4) ...
Setting up libglu1-mesa-dev:arm64 (9.0.2-1.1+b3) ...
Setting up g++-aarch64-linux-gnu (4:15.2.0-4) ...
Setting up libglut-dev:arm64 (3.4.0-6) ...
Setting up libsimtkmolmodel-plugins:arm64 (3.1.0-4.1+b4) ...
Setting up libsimtkmolmodel-dev:arm64 (3.1.0-4.1+b4) ...
Setting up freeglut3-dev:arm64 (3.4.0-6) ...
Setting up crossbuild-essential-arm64 (12.12) ...
Setting up libsimbody-dev:arm64 (3.7+dfsg-5) ...
Processing triggers for libc-bin (2.41-12) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up docbook-xsl (1.79.2+dfsg-8) ...
Setting up sgml-data (2.0.11+nmu1) ...
Setting up asciidoc-base (10.2.1-1) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up docbook-xml (4.5-13) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (arm64 included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.45.50.20251125-1 dpkg-dev_1.22.21 g++-15_15.2.0-9 gcc-15_15.2.0-9 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-9 libstdc++-15-dev-arm64-cross_15.2.0-7cross1 libstdc++6_15.2.0-9 libstdc++6-arm64-cross_15.2.0-7cross1 linux-libc-dev_6.17.8-1
Package versions: apt_3.1.12 apt-utils_3.1.12 architecture-properties_0.2.6 asciidoc-base_10.2.1-1 asciidoc-common_10.2.1-1 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45.50.20251125-1 binutils-aarch64-linux-gnu_2.45.50.20251125-1 binutils-common_2.45.50.20251125-1 binutils-x86-64-linux-gnu_2.45.50.20251125-1 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-9 cpp-15-aarch64-linux-gnu_15.2.0-7cross1 cpp-15-x86-64-linux-gnu_15.2.0-9 cpp-aarch64-linux-gnu_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-arm64_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-8 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 freeglut3-dev_3.4.0-6 g++_4:15.2.0-4 g++-15_15.2.0-9 g++-15-aarch64-linux-gnu_15.2.0-7cross1 g++-15-x86-64-linux-gnu_15.2.0-9 g++-aarch64-linux-gnu_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-9 gcc-15-aarch64-linux-gnu_15.2.0-7cross1 gcc-15-aarch64-linux-gnu-base_15.2.0-7cross1 gcc-15-base_15.2.0-9 gcc-15-cross-base_15.2.0-7cross1 gcc-15-x86-64-linux-gnu_15.2.0-9 gcc-aarch64-linux-gnu_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gemmi-dev_0.7.1+ds-2 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.12 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-9 libasan8-arm64-cross_15.2.0-7cross1 libatomic1_15.2.0-9 libatomic1-arm64-cross_15.2.0-7cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45.50.20251125-1 libblas-dev_3.12.1-7 libblas3_3.12.1-7 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-arm64-cross_2.41-11cross1 libc6-dev_2.41-12 libc6-dev-arm64-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-9 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45.50.20251125-1 libctf0_2.45.50.20251125-1 libcurl4t64_8.17.0-3 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.282 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libdrm-amdgpu1_2.4.127-1 libdrm-common_2.4.127-1 libdrm2_2.4.127-1 libedit2_3.1-20250104-1 libelf1t64_0.194-1 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgbm1_25.2.7-1 libgcc-15-dev_15.2.0-9 libgcc-15-dev-arm64-cross_15.2.0-7cross1 libgcc-s1_15.2.0-9 libgcc-s1-arm64-cross_15.2.0-7cross1 libgcrypt20_1.11.2-3 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-9 libgl-dev_1.7.0-1+b2 libgl1_1.7.0-1+b2 libgl1-mesa-dri_25.2.7-1 libglu1-mesa_9.0.2-1.1+b3 libglu1-mesa-dev_9.0.2-1.1+b3 libglut-dev_3.4.0-6 libglut3.12_3.4.0-6 libglvnd0_1.7.0-1+b2 libglx-dev_1.7.0-1+b2 libglx-mesa0_25.2.7-1 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.11-3 libgomp1_15.2.0-9 libgomp1-arm64-cross_15.2.0-7cross1 libgpg-error0_1.56-2 libgprofng0_2.45.50.20251125-1 libgssapi-krb5-2_1.22.1-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-9 libhwasan0-arm64-cross_15.2.0-7cross1 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-9 libitm1-arm64-cross_15.2.0-7cross1 libjansson4_2.14-2+b3 libjsoncpp26_1.9.6-5 libk5crypto3_1.22.1-2 libkeyutils1_1.6.3-6 libkrb5-3_1.22.1-2 libkrb5support0_1.22.1-2 liblapack-dev_3.12.1-7 liblapack3_3.12.1-7 libldap2_2.6.10+dfsg-1 libllvm19_1:19.1.7-18 liblsan0_15.2.0-9 liblsan0-arm64-cross_15.2.0-7cross1 liblz4-1_1.10.0-6 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20251123-1 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libopengl-dev_1.7.0-1+b2 libopengl0_1.7.0-1+b2 libopenmm-dev_8.1.2+dfsg-12 libopenmm8.1_8.1.2+dfsg-12 libp11-kit0_0.25.10-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.7-1 libpython3.13-minimal_3.13.9-1 libpython3.13-stdlib_3.13.9-1 libquadmath0_15.2.0-9 libreadline8t64_8.3-3 librhash1_1.4.6-1.1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-4 libsemanage-common_3.9-1 libsemanage2_3.9-1 libsensors-config_1:3.6.2-2 libsensors5_1:3.6.2-2 libsepol2_3.9-2 libseqan2-dev_2.4.0+dfsg-16 libsframe2_2.45.50.20251125-1 libsimbody-dev_3.7+dfsg-5 libsimbody3.7_3.7+dfsg-5 libsimtkmolmodel-dev_3.1.0-4.1+b4 libsimtkmolmodel-plugins_3.1.0-4.1+b4 libsimtkmolmodel3.1t64_3.1.0-4.1+b4 libsm-dev_2:1.2.6-1 libsm6_2:1.2.6-1 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstb-dev_0.0~git20250907.fede005+ds-1 libstb0t64_0.0~git20250907.fede005+ds-1 libstdc++-15-dev_15.2.0-9 libstdc++-15-dev-arm64-cross_15.2.0-7cross1 libstdc++6_15.2.0-9 libstdc++6-arm64-cross_15.2.0-7cross1 libsystemd0_259~rc1-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20251123-1 libtool_2.5.4-7 libtsan2_15.2.0-9 libtsan2-arm64-cross_15.2.0-7cross1 libubsan1_15.2.0-9 libubsan1-arm64-cross_15.2.0-7cross1 libuchardet0_0.0.8-2 libudev1_259~rc1-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libvulkan1_1.4.328.1-1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libx11-xcb1_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-dri3-0_1.17.0-2+b1 libxcb-glx0_1.17.0-2+b1 libxcb-present0_1.17.0-2+b1 libxcb-randr0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-sync1_1.17.0-2+b1 libxcb-xfixes0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxfixes-dev_1:6.0.0-2+b4 libxfixes3_1:6.0.0-2+b4 libxi-dev_2:1.8.2-1 libxi6_2:1.8.2-1 libxml2-16_2.15.1+dfsg-1 libxml2-utils_2.15.1+dfsg-1 libxmu-dev_2:1.1.3-3+b4 libxmu-headers_2:1.1.3-3 libxmu6_2:1.1.3-3+b4 libxshmfence1_1.3.3-1 libxslt1.1_1.1.43-0.3 libxt-dev_1:1.2.1-1.3 libxt6t64_1:1.2.1-1.3 libxxf86vm1_1:1.1.4-2 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.8-1 linux-libc-dev-arm64-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 mesa-libgallium_25.2.7-1 mount_2.41.2-4 ncurses-base_6.5+20251123-1 ncurses-bin_6.5+20251123-1 netbase_6.5 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-2 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 python3_3.13.7-1 python3-minimal_3.13.7-1 python3.13_3.13.9-1 python3.13-minimal_3.13.9-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sgml-base_1.31+nmu1 sgml-data_2.0.11+nmu1 sqv_1.3.0-3 sysvinit-utils_3.15-6 tao-pegtl-dev_3.2.7-1 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 uuid-dev_2.41.2-4 x11-common_1:7.7+26 x11proto-dev_2024.1-1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xsltproc_1.1.43-0.3 xtrans-dev_1.6.0-1 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: macromoleculebuilder
Binary: libmmb-dev, libmmb4.1, mmb, mmb-common
Architecture: any all
Version: 4.2+dfsg-1
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders:  Andrius Merkys <merkys@debian.org>,
Homepage: https://simtk.org/projects/rnatoolbox
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder
Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git
Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev
Package-List:
 libmmb-dev deb libdevel optional arch=any
 libmmb4.1 deb libs optional arch=any
 mmb deb science optional arch=any
 mmb-common deb science optional arch=all
Checksums-Sha1:
 b4d715369a6ec4c6833c2513515476865c740904 2079836 macromoleculebuilder_4.2+dfsg.orig.tar.xz
 eb5d3d223a152327de27e38a6642dc97560cd052 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
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 8c5a9cfe46a2a28ee1b42c003e97109702151a44ffead53d94c997c08f59ae90 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
Files:
 1d0a787370d5019e165d655ef5a6cee0 2079836 macromoleculebuilder_4.2+dfsg.orig.tar.xz
 74036500443b8e1c4c559ecef674c235 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz

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dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.2+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting macromoleculebuilder in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macromoleculebuilder_4.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch
dpkg-source: info: applying ignore-gemmi-check.patch
dpkg-source: info: applying fix-gemmi-incompatibility.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.q0z7XZ97k1/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-b0ad012c-72f3-450a-99c5-1e0bcc8edd76
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package macromoleculebuilder
dpkg-buildpackage: info: source version 4.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture arm64
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
	-DCMAKE_BUILD_TYPE=Release \
	-DENABLE_LEPTON=OFF \
	-DGEMMI_DIR=/usr \
	-DOpenMM_INCLUDE_DIR=/usr/include \
	-DSimTKmolmodel=/usr \
	-DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0"
	cd obj-aarch64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/aarch64-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=aarch64 -DCMAKE_C_COMPILER=aarch64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=aarch64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/aarch64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/aarch64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/aarch64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_BUILD_TYPE=Release -DENABLE_LEPTON=OFF -DGEMMI_DIR=/usr -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr -DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0" ..
-- The CXX compiler identification is GNU 15.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/aarch64-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMM: /usr/include
-- Found ZLIB: /usr/lib/aarch64-linux-gnu/libz.so (found version "1.3.1")
-- Found gemmi version 0.7.1
-- Looking for copy_file_range
-- Looking for copy_file_range - found
-- Looking for sendfile
-- Looking for sendfile - found
-- Configuring done (0.5s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_TESTING
    CMAKE_C_COMPILER
    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED
    PKGCONFIG_EXECUTABLE
    PKG_CONFIG_EXECUTABLE
    QMAKE_EXECUTABLE
    SimTKmolmodel


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	cd obj-aarch64-linux-gnu && make -j1 INSTALL="install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu /<<PKGBUILDDIR>>/obj-aarch64-linux-gnu/CMakeFiles/MMB.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[  3%] Building CXX object CMakeFiles/MMB.dir/src/Utils.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Utils.cpp.o -MF CMakeFiles/MMB.dir/src/Utils.cpp.o.d -o CMakeFiles/MMB.dir/src/Utils.cpp.o -c /<<PKGBUILDDIR>>/src/Utils.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/src/Utils.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[  6%] Building CXX object CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -MF CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o.d -o CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -c /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:14:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::renumberPdbResidues(ResidueID)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:551:9: warning: unused variable ‘myNewResidueNumberWithoutInsertionCode’ [-Wunused-variable]
  551 |     int myNewResidueNumberWithoutInsertionCode = firstResidueID.getResidueNumber() ;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::matchCoordinates(const SimTK::PdbStructure&, bool, bool, bool, bool, bool, bool, double, double)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:669:45: warning: variable ‘biopolymerAtomTargetsIterator’ set but not used [-Wunused-but-set-variable]
  669 |     Compound::AtomTargetLocations::iterator biopolymerAtomTargetsIterator = biopolymerAtomTargets.begin();
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘ResidueID BiopolymerClass::sum(ResidueID, int) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2172:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2172 |         if ((newResidueIndex < 0) || (newResidueIndex >= residueIDVector.size())) {
      |                                       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:16:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4680:61:   required from here
 4680 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:283:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  283 |             for (int i = 0; i < chainAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:300:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  300 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2584:54:   required from ‘void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = MobilizerStretch]’
 2584 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2588:181:   required from here
 2588 | template void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch &residueStretch, ResidueStretchContainer<MobilizerStretch> &residueStretchContainer);
      |                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MobilizerStretch>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:320:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  320 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addResidueStretchToVector(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4680:61:   required from here
 4680 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4825:54:   required from ‘void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = DensityStretch]’
 4825 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4828:213:   required from here
 4828 | template void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer &mobilizerContainer, ResidueStretchContainer<DensityStretch> &residueStretchContainer);
      |                                                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
[  9%] Building CXX object CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -MF CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o.d -o CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -c /<<PKGBUILDDIR>>/src/UnitCellParameters.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/UnitCellParameters.h:3,
                 from /<<PKGBUILDDIR>>/src/UnitCellParameters.cpp:4:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -MF CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -c /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘double AtomSpringContainer::calcRmsd(SimTK::State&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:65:12: warning: unused variable ‘myExtension’ [-Wunused-variable]
   65 |     double myExtension = 0.0;
      |            ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteAtomSpring(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:194:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  194 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateAtomSpring(int, const AtomSpring&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:201:21: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  201 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:260:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  260 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:268:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  268 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, SimTK::String, ResidueID, ResidueID, SimTK::String, ResidueID, ResidueID, double, bool, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:279:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteGappedThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:446:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  446 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:454:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  454 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, SimTK::String, SimTK::String, double, bool, BiopolymerClassContainer&, double, SimTK::String)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:463:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  463 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::createSpringsFromGappedThreading(BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:493:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size<seqan::String<char, seqan::Alloc<> > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare]
  493 |         while ((aIndex < length(thread.updThreadingPartner(0).sequence)) &&
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:494:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size<seqan::String<char, seqan::Alloc<> > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare]
  494 |                (bIndex < length(thread.updThreadingPartner(1).sequence)))
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
In file included from /usr/include/molmodel/molmodel/internal/Compound.h:41,
                 from /usr/include/molmodel/SimTKmolmodel.h:53,
                 from /<<PKGBUILDDIR>>/include/Utils.h:24:
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
[ 15%] Building CXX object CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/include/DisplacementContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 18%] Building CXX object CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:12:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp: In member function ‘void MobilizerContainer::addMobilizerDomainsInterfacesToVector(const std::vector<MobilizerDomainsInterface>&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:190:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  190 |             if( (dist <= it->range) &&
      |                 ~~~~~~~~~~~~~~~~~~~~^~
  191 |                 (it->domain1.contains(chain1, res1) && it->domain2.contains(chain2, res2)) ||
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 21%] Building CXX object CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/MoleculeContainer.h:6,
                 from /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:3:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/ConstraintContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/MoleculeContainer.h:8:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp: In constructor ‘CustomMolecule::CustomMolecule(std::vector<std::vector<SimTK::String> >, SimTK::DuMMForceFieldSubsystem&)’:
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:324:15: warning: unused variable ‘myAngle1’ [-Wunused-variable]
  324 |         Angle myAngle1 = 180*Deg2Rad; // this is a bond angle
      |               ^~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 25%] Building CXX object CMakeFiles/MMB.dir/src/DensityContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DensityContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DensityContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:4,
                 from /<<PKGBUILDDIR>>/include/DensityContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DensityContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityContainer.cpp: In member function ‘void DensityContainer::updateDensityStretch(int, const DensityStretch&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/DensityContainer.cpp:18:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   18 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 28%] Building CXX object CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o -MF CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o -c /<<PKGBUILDDIR>>/src/BasePairContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/BasePairContainer.h:16,
                 from /<<PKGBUILDDIR>>/src/BasePairContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/include/BasePairContainer.h:17:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BasePairContainer.cpp: In member function ‘void BasePairContainer::updateBasePair(int, SimTK::String, int, SimTK::String, SimTK::String, int, SimTK::String, SimTK::String, BiopolymerClassContainer&, const LeontisWesthofClass&, bool)’:
/<<PKGBUILDDIR>>/src/BasePairContainer.cpp:44:28: warning: ignoring return value of ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::at(size_type) [with _Tp = BaseInteraction; _Alloc = std::allocator<BaseInteraction>; reference = BaseInteraction&; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result]
   44 |         myBasePairVector.at(index);
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /usr/aarch64-linux-gnu/include/c++/15/vector:68,
                 from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
                 from /usr/include/simbody/SimTKcommon/basics.h:53,
                 from /usr/include/simbody/SimTKcommon.h:32:
/usr/aarch64-linux-gnu/include/c++/15/bits/stl_vector.h:1313:7: note: declared here
 1313 |       at(size_type __n)
      |       ^~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 31%] Building CXX object CMakeFiles/MMB.dir/src/ContactContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ContactContainer.cpp.o -MF CMakeFiles/MMB.dir/src/ContactContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/ContactContainer.cpp.o -c /<<PKGBUILDDIR>>/src/ContactContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/src/ContactContainer.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/ContactContainer.cpp:12:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::validateContact(ContactStretch, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:26:10: warning: variable ‘myEndCapsOn’ set but not used [-Wunused-but-set-variable]
   26 |     bool myEndCapsOn;
      |          ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::deleteContactWithin(int)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:70:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   70 |     if(id < 0 || id >= contactWithinVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::updateContactWithin(int, SimTK::String, int, double, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:77:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   77 |     if(id < 0 || id >= contactWithinVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::deleteContact(int)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactStretch, std::allocator<ContactStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::updateContact(int, std::string, int, int, std::string, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:283:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactStretch, std::allocator<ContactStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  283 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘bool ContactContainer::hasSharedContact(SimTK::String, ResidueID, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:313:71: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  313 |             ((tempContactStretch.getStartResidue() <= endResidueID)   && (tempContactStretch.getEndResidue() >= endResidueID) ||   // the supplied end residue is in the range of this ContactStretch (with index $i).
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 34%] Building CXX object CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o -MF CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o -c /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/include/ConstraintContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:10:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:11:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp: In member function ‘void ConstraintToGroundContainer::updateConstraintToVector(int, SimTK::String, ResidueID, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:129:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ConstraintClass>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  129 |     if(index < 0 || index >= constraintClassVector.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp: In member function ‘void ConstraintToGroundContainer::updateConstraintToVector(int, SimTK::String, ResidueID, SimTK::String, SimTK::String, ResidueID, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:146:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ConstraintClass>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  146 |     if(index < 0 || index >= constraintClassVector.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 37%] Building CXX object CMakeFiles/MMB.dir/src/Repel.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Repel.cpp.o -MF CMakeFiles/MMB.dir/src/Repel.cpp.o.d -o CMakeFiles/MMB.dir/src/Repel.cpp.o -c /<<PKGBUILDDIR>>/src/Repel.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/Repel.h:23,
                 from /<<PKGBUILDDIR>>/src/Repel.cpp:12:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicScrubber.h:16,
                 from /<<PKGBUILDDIR>>/include/Repel.h:24:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::constraintsAndRestraints(ParameterReader&, BiopolymerClassContainer&, SimTK::GeneralForceSubsystem&, SimTK::SimbodyMatterSubsystem&, SimTK::State&, SimTK::CompoundSystem&)’:
/<<PKGBUILDDIR>>/src/Repel.cpp:172:31: warning: variable ‘myResidueID’ set but not used [-Wunused-but-set-variable]
  172 |                     ResidueID myResidueID = myConstraintClass.getResidueID1();
      |                               ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Repel.h: In constructor ‘ConstrainedDynamics::ConstrainedDynamics(ParameterReader*)’:
/<<PKGBUILDDIR>>/include/Repel.h:269:29: warning: ‘ConstrainedDynamics::_parameterReader’ will be initialized after [-Wreorder]
  269 |     ParameterReader *       _parameterReader;
      |                             ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Repel.h:259:29: warning:   ‘SimTK::SimbodyMatterSubsystem ConstrainedDynamics::_matter’ [-Wreorder]
  259 |     SimbodyMatterSubsystem  _matter;
      |                             ^~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:342:1: warning:   when initialized here [-Wreorder]
  342 | ConstrainedDynamics::ConstrainedDynamics(ParameterReader * myParameterReader) : _parameterReader(myParameterReader),
      | ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::initializeBiopolymer(SimTK::String, SimTK::String)’:
/<<PKGBUILDDIR>>/src/Repel.cpp:405:10: warning: variable ‘readFromFile’ set but not used [-Wunused-but-set-variable]
  405 |     bool readFromFile = false;
      |          ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::runAllSteps()’:
/<<PKGBUILDDIR>>/src/Repel.cpp:1040:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1040 |     for(; _nextFrame <= _parameterReader->numReportingIntervals; _nextFrame++){
      |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:208:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  208 |                 for (int i = 0; i < interfaceContainer.numInterfaces(); i++) {
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:208:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  208 |                 for (int i = 0; i < interfaceContainer.numInterfaces(); i++) {
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:232:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  232 |             for (int i = 0; i < concatenatedAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:244:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:232:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  232 |             for (int i = 0; i < concatenatedAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:244:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:264:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  264 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addStretch(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MobilizerStretch>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:264:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  264 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addStretch(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: At global scope:
/<<PKGBUILDDIR>>/src/Repel.cpp:97:17: warning: ‘bool compareUpper(const std::string&, const char*)’ defined but not used [-Wunused-function]
   97 |     static bool compareUpper( const string& param, const char* symbol ) {
      |                 ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 40%] Building CXX object CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o -MF CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o.d -o CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o -c /<<PKGBUILDDIR>>/src/MonoAtoms.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/src/MonoAtoms.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 43%] Building CXX object CMakeFiles/MMB.dir/src/Spiral.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Spiral.cpp.o -MF CMakeFiles/MMB.dir/src/Spiral.cpp.o.d -o CMakeFiles/MMB.dir/src/Spiral.cpp.o -c /<<PKGBUILDDIR>>/src/Spiral.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/Spiral.h:14,
                 from /<<PKGBUILDDIR>>/src/Spiral.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Spiral.h:16:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::clear()’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:92:12: warning: unused variable ‘helixAdvancePerBasePair’ [-Wunused-variable]
   92 |     double helixAdvancePerBasePair = -11111. ;  // in nm // should be user specified.
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘double Spiral::harmonicThetaAdjustment(double)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:124:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<frequencyPhaseAmplitude>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  124 |     for (int i =0; i < frequencyPhaseAmplitudeVector.size(); i++){
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::writeCylindricalSpiralCommandFile(MonoAtomsContainer&)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:140:10: warning: variable ‘deltaZ’ set but not used [-Wunused-but-set-variable]
  140 |     Vec3 deltaZ = Vec3(0,0,1) * sin(cylindricalSpiralSlopeAngle(pitch,radius))*helixAdvancePerBasePair ;
      |          ^~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::writeSphericalSpiralCommandFile(MonoAtomsContainer&)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:238:16: warning: unused variable ‘currentPhi’ [-Wunused-variable]
  238 |         double currentPhi = priorPhi + deltaPhi ; // phiFromTheta(currentTheta, pitch, radius, phiOffset);
      |                ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp:221:12: warning: unused variable ‘phiOffsetFromStartingTheta’ [-Wunused-variable]
  221 |     double phiOffsetFromStartingTheta = phiFromTheta(startTheta, pitch, radius, 0.0, spiralIsRightHanded); // use offset = 0 to retreive the original, non-offset phi
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 46%] Building CXX object CMakeFiles/MMB.dir/src/ParameterReader.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ParameterReader.cpp.o -MF CMakeFiles/MMB.dir/src/ParameterReader.cpp.o.d -o CMakeFiles/MMB.dir/src/ParameterReader.cpp.o -c /<<PKGBUILDDIR>>/src/ParameterReader.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/src/ParameterReader.cpp:17:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::removeNonPriorityBasePairs(int)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:727:9: warning: unused variable ‘oldDutyCyclePriority’ [-Wunused-variable]
  727 |     int oldDutyCyclePriority=0;
      |         ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::updateAllResiduesWithin(int, SimTK::String, int, double)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:776:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AllResiduesWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  776 |     if(index < 0 || index >= includeAllResiduesWithinVector.size()){
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::deleteAllResiduesWithin(int)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:785:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AllResiduesWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  785 |     if(index < 0 || index >= includeAllResiduesWithinVector.size()){
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:1578:17: warning: unused variable ‘myForceConstant’ [-Wunused-variable]
 1578 |          double myForceConstant = 1000000000.0; // set to super high value just to make sure it's being reset later.
      |                 ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2084:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2084 |             if ((parameterStringClass.getString(0).compare("constraint") == 0) || (parameterStringClass.getString(0).compare("restraint") == 0))
      |                ^
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2673:27: warning: variable ‘residueID1’ set but not used [-Wunused-but-set-variable]
 2673 |                 ResidueID residueID1 = ResidueID(-11111,'X');
      |                           ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2674:27: warning: variable ‘residueID2’ set but not used [-Wunused-but-set-variable]
 2674 |                 ResidueID residueID2 = ResidueID(-11111,'X');
      |                           ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2750:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2750 |             if ((parameterStringClass.getString(0).compare("constraint") == 0) || (parameterStringClass.getString(0).compare("restraint") == 0))
      |                ^
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:814:42:   required from here
  814 |     physicsContainer.deleteResidueStretch(index);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o -MF CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o.d -o CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o -c /<<PKGBUILDDIR>>/src/BaseInteractionParameterReader.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/src/BaseInteractionParameterReader.cpp:17:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/BaseInteractionParameterReader.h:22,
                 from /<<PKGBUILDDIR>>/src/BaseInteractionParameterReader.cpp:18:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 53%] Building CXX object CMakeFiles/MMB.dir/src/TetherForce.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/TetherForce.cpp.o -MF CMakeFiles/MMB.dir/src/TetherForce.cpp.o.d -o CMakeFiles/MMB.dir/src/TetherForce.cpp.o -c /<<PKGBUILDDIR>>/src/TetherForce.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/TetherForce.h:18,
                 from /<<PKGBUILDDIR>>/src/TetherForce.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/TetherForce.h:19:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 56%] Building CXX object CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o -MF CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o.d -o CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o -c /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClassTwoTransformForces.h:16,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:10:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClassTwoTransformForces.h:17:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:279:16: warning: variable ‘dutyCycle’ set but not used [-Wunused-but-set-variable]
  279 |         double dutyCycle; //must be between 0 and 1.  at 1, force is applied all the time.  at 0, basically never applied.
      |                ^~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:280:16: warning: variable ‘scrubberPeriod’ set but not used [-Wunused-but-set-variable]
  280 |         double scrubberPeriod;
      |                ^~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:254:29: warning: ‘myFrcScalar’ may be used uninitialized [-Wmaybe-uninitialized]
  254 |                 myFrcScalar *= myParameterReader.twoTransformForceMultiplier;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:167:20: note: ‘myFrcScalar’ was declared here
  167 |             double myFrcScalar;
      |                    ^~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
[ 59%] Building CXX object CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o -MF CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o.d -o CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o -c /<<PKGBUILDDIR>>/src/WaterDroplet.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/Water.h:1,
                 from /<<PKGBUILDDIR>>/include/WaterDroplet.h:15,
                 from /<<PKGBUILDDIR>>/src/WaterDroplet.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/WaterDroplet.h:16:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/WaterDroplet.h:17:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 62%] Building CXX object CMakeFiles/MMB.dir/src/DensityMap.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityMap.cpp.o -MF CMakeFiles/MMB.dir/src/DensityMap.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityMap.cpp.o -c /<<PKGBUILDDIR>>/src/DensityMap.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/src/DensityMap.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::resizeVectorOfAmplitudeAndRandomPhases()’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:177:62: warning: comparison of integer expressions of different signedness: ‘std::vector<std::vector<std::vector<AmplitudeFrequencyAndRandomPhases> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  177 |         if (vectorOfAmplitudeFrequencyAndRandomPhases.size() != (unitCellParameters.calcMaxFrequencyDoublingsZ()+1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:181:78: warning: comparison of integer expressions of different signedness: ‘std::vector<std::vector<AmplitudeFrequencyAndRandomPhases> >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  181 |                 if (vectorOfAmplitudeFrequencyAndRandomPhases[zIndex].size() != (unitCellParameters.calcMaxFrequencyDoublingsY()+1) ) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:185:90: warning: comparison of integer expressions of different signedness: ‘std::vector<AmplitudeFrequencyAndRandomPhases>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  185 |                     if (vectorOfAmplitudeFrequencyAndRandomPhases[zIndex][yIndex].size() != (unitCellParameters.calcMaxFrequencyDoublingsX()+1 )) {
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::densityAutocorrelation(bool, bool) const’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:209:12: warning: unused variable ‘ySquared’ [-Wunused-variable]
  209 |     double ySquared = 0.;
      |            ^~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:210:12: warning: unused variable ‘zSquared’ [-Wunused-variable]
  210 |     double zSquared = 0.;
      |            ^~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::populateNoiseMap()’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:307:12: warning: unused variable ‘groundFrequencyX’ [-Wunused-variable]
  307 |     double groundFrequencyX = 1/unitCellParameters.getNa()/unitCellParameters.geta()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:308:12: warning: unused variable ‘groundFrequencyY’ [-Wunused-variable]
  308 |     double groundFrequencyY = 1/unitCellParameters.getNb()/unitCellParameters.getb()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:309:12: warning: unused variable ‘groundFrequencyZ’ [-Wunused-variable]
  309 |     double groundFrequencyZ = 1/unitCellParameters.getNc()/unitCellParameters.getc()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:311:12: warning: unused variable ‘maxFrequencyX’ [-Wunused-variable]
  311 |     double maxFrequencyX = 1/unitCellParameters.geta()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:312:12: warning: unused variable ‘maxFrequencyY’ [-Wunused-variable]
  312 |     double maxFrequencyY = 1/unitCellParameters.getb()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:313:12: warning: unused variable ‘maxFrequencyZ’ [-Wunused-variable]
  313 |     double maxFrequencyZ = 1/unitCellParameters.getc()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:318:12: warning: variable ‘signalToNoiseRatio’ set but not used [-Wunused-but-set-variable]
  318 |     double signalToNoiseRatio = 0.;
      |            ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:319:12: warning: unused variable ‘inverseNoiseTemperatureToPower4’ [-Wunused-variable]
  319 |     double inverseNoiseTemperatureToPower4 = 1/pow(noiseTemperature,4); //Stefan–Boltzmann law says total radiance goes like T^4. So we normalize by this number to keep noise sort of constant with temperatuere. Of course our oven has a maximum wavenumber, so this won't be perfect.
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::writeDensityMapXplor(SimTK::String, bool, bool)’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:689:13: warning: unused variable ‘densitiesPerLine’ [-Wunused-variable]
  689 |         int densitiesPerLine = 6;
      |             ^~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 65%] Building CXX object CMakeFiles/MMB.dir/src/DensityForce.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityForce.cpp.o -MF CMakeFiles/MMB.dir/src/DensityForce.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityForce.cpp.o -c /<<PKGBUILDDIR>>/src/DensityForce.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/DensityForce.h:19,
                 from /<<PKGBUILDDIR>>/src/DensityForce.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/DensityForce.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 68%] Building CXX object CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o -MF CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o.d -o CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o -c /<<PKGBUILDDIR>>/src/ElectrostaticPotentialGridForce.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/ElectrostaticPotentialGridForce.h:18,
                 from /<<PKGBUILDDIR>>/src/ElectrostaticPotentialGridForce.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/ElectrostaticPotentialGridForce.h:19:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 71%] Building CXX object CMakeFiles/MMB.dir/src/MMBLogger.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MMBLogger.cpp.o -MF CMakeFiles/MMB.dir/src/MMBLogger.cpp.o.d -o CMakeFiles/MMB.dir/src/MMBLogger.cpp.o -c /<<PKGBUILDDIR>>/src/MMBLogger.cpp
[ 75%] Building CXX object CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o -MF CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o.d -o CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o -c /<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicPdbAndEnergyWriter.h:13,
                 from /<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:18:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp: In member function ‘virtual void SimTK::PeriodicPdbAndEnergyWriter::handleEvent(SimTK::State&, SimTK::Real, bool&) const’:
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:201:30: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  201 |         if(myEnergies.size() > myParameterReader.convergenceTimeout) {
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:202:20: warning: unused variable ‘lastEnergy’ [-Wunused-variable]
  202 |             double lastEnergy = myEnergies.back();
      |                    ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:49:9: warning: unused variable ‘compoundNumber’ [-Wunused-variable]
   49 |     int compoundNumber                                = 1;
      |         ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:50:9: warning: unused variable ‘requiredPrecision’ [-Wunused-variable]
   50 |     int requiredPrecision                             = 12;
      |         ^~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 78%] Building CXX object CMakeFiles/MMB.dir/src/CifOutput.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/CifOutput.cpp.o -MF CMakeFiles/MMB.dir/src/CifOutput.cpp.o.d -o CMakeFiles/MMB.dir/src/CifOutput.cpp.o -c /<<PKGBUILDDIR>>/src/CifOutput.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/include/CifOutput.h:5,
                 from /<<PKGBUILDDIR>>/src/CifOutput.cpp:1:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicPdbAndEnergyWriter.h:13,
                 from /<<PKGBUILDDIR>>/include/CifOutput.h:12:
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 81%] Building CXX object CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o -MF CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o.d -o CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o -c /<<PKGBUILDDIR>>/src/ProgressWriter.cpp
[ 84%] Building CXX object CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o -MF CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o.d -o CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o -c /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp:15:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/NtC_Class_Container.h:14,
                 from /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp:16:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/NTC_FORCE_CLASS.h:4,
                 from /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp:17:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 87%] Building CXX object CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o -MF CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o -c /<<PKGBUILDDIR>>/src/NtCClassContainer.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16,
                 from /<<PKGBUILDDIR>>/src/NtCClassContainer.cpp:13:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 90%] Building CXX object CMakeFiles/MMB.dir/src/NtCForces.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NtCForces.cpp.o -MF CMakeFiles/MMB.dir/src/NtCForces.cpp.o.d -o CMakeFiles/MMB.dir/src/NtCForces.cpp.o -c /<<PKGBUILDDIR>>/src/NtCForces.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/NtCForces.h:12,
                 from /<<PKGBUILDDIR>>/src/NtCForces.cpp:11:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/NtCForces.h:13:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 93%] Linking CXX shared library libMMB.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/MMB.dir/link.txt --verbose=1
/usr/lib/aarch64-linux-gnu/libz.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/lib/gcc-cross/aarch64-linux-gnu/15/libstdc++.so: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/aarch64-linux-gnu/lib/libm.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/aarch64-linux-gnu/lib/libmvec.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/aarch64-linux-gnu/lib/libc.so.6: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/aarch64-linux-gnu/lib/ld-linux-aarch64.so.1: warning: GCS is required by -z gcs, but this shared library lacks the necessary property note. The dynamic loader might not enable GCS or refuse to load the program unless all the shared library dependencies have the GCS marking.
/usr/bin/aarch64-linux-gnu-g++ -fPIC -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/MMB.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libMMB.so.4.1 -o libMMB.so.4.1 CMakeFiles/MMB.dir/src/Utils.cpp.o CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o CMakeFiles/MMB.dir/src/DensityContainer.cpp.o CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o CMakeFiles/MMB.dir/src/ContactContainer.cpp.o CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o CMakeFiles/MMB.dir/src/Repel.cpp.o CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o CMakeFiles/MMB.dir/src/Spiral.cpp.o CMakeFiles/MMB.dir/src/ParameterReader.cpp.o CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o CMakeFiles/MMB.dir/src/TetherForce.cpp.o CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o CMakeFiles/MMB.dir/src/DensityMap.cpp.o CMakeFiles/MMB.dir/src/DensityForce.cpp.o CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o CMakeFiles/MMB.dir/src/MMBLogger.cpp.o CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o CMakeFiles/MMB.dir/src/CifOutput.cpp.o CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o CMakeFiles/MMB.dir/src/NtCForces.cpp.o   -L/<<PKGBUILDDIR>>/SYSTEM  -Wl,-rpath,/<<PKGBUILDDIR>>/SYSTEM: /usr/lib/aarch64-linux-gnu/libSimTKmolmodel.so.3.1 /usr/lib/aarch64-linux-gnu/libOpenMM.so /usr/lib/aarch64-linux-gnu/libz.so -lgemmi_cpp /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.7 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm
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make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[ 96%] Building CXX object CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o
/usr/bin/aarch64-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -MD -MT CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -MF CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o.d -o CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -c /<<PKGBUILDDIR>>/src/RNABuilder.cpp
In file included from /usr/include/simbody/SimTKcommon/Simmatrix.h:36,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/src/RNABuilder.cpp:20:
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(double)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1169:43: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1169 | approxCompleteEllipticIntegralsKE(double m)
      |                                           ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::approxCompleteEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1177:42: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1177 | approxCompleteEllipticIntegralsKE(float m)
      |                                          ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::approxCompleteEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1186:40: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1186 | approxCompleteEllipticIntegralsKE(int m)
      |                                        ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<float, float> SimTK::completeEllipticIntegralsKE(float)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1257:66: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1257 | inline std::pair<float,float> completeEllipticIntegralsKE(float m)
      |                                                                  ^
/usr/include/simbody/SimTKcommon/Scalar.h: In function ‘std::pair<double, double> SimTK::completeEllipticIntegralsKE(int)’:
/usr/include/simbody/SimTKcommon/Scalar.h:1265:66: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1265 | inline std::pair<double,double> completeEllipticIntegralsKE(int m)
      |                                                                  ^
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/src/RNABuilder.cpp:22:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::approxCompleteEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1178:54:   required from here
 1178 | {   return approxCompleteEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1095:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1095 | static inline std::pair<T,T> approxCompleteEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = double]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1249:49:   required from here
 1249 | {   return completeEllipticIntegralsKE_T<double>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<double, double>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/include/simbody/SimTKcommon/Scalar.h: In instantiation of ‘std::pair<_FIter, _FIter> SimTK::completeEllipticIntegralsKE_T(T) [with T = float]’:
/usr/include/simbody/SimTKcommon/Scalar.h:1258:48:   required from here
 1258 | {   return completeEllipticIntegralsKE_T<float>(m); }
      |            ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~
/usr/include/simbody/SimTKcommon/Scalar.h:1192:30: note: parameter passing for argument of type ‘std::pair<float, float>’ when C++17 is enabled changed to match C++14 in GCC 10.1
 1192 | static inline std::pair<T,T> completeEllipticIntegralsKE_T(T m) {
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[100%] Linking CXX executable MMB
/usr/bin/cmake -E cmake_link_script CMakeFiles/MMB_EXEC.dir/link.txt --verbose=1
/usr/bin/aarch64-linux-gnu-g++ -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/MMB_EXEC.dir/link.d CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -o MMB   -L/<<PKGBUILDDIR>>/SYSTEM  -Wl,-rpath,/<<PKGBUILDDIR>>/SYSTEM:/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu: libMMB.so.4.1 /usr/lib/aarch64-linux-gnu/libz.so /usr/lib/aarch64-linux-gnu/libSimTKmolmodel.so.3.1 /usr/lib/aarch64-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/aarch64-linux-gnu/libSimTKmath.so.3.7 /usr/lib/aarch64-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so /usr/lib/aarch64-linux-gnu/libblas.so /usr/lib/aarch64-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-aarch64-linux-gnu'
[100%] Built target MMB_EXEC
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   dh_builddeb -a
dpkg-deb: building package 'libmmb-dev' in '../libmmb-dev_4.2+dfsg-1_arm64.deb'.
dpkg-deb: building package 'libmmb4.1' in '../libmmb4.1_4.2+dfsg-1_arm64.deb'.
dpkg-deb: building package 'libmmb4.1-dbgsym' in '../libmmb4.1-dbgsym_4.2+dfsg-1_arm64.deb'.
dpkg-deb: building package 'mmb' in '../mmb_4.2+dfsg-1_arm64.deb'.
dpkg-deb: building package 'mmb-dbgsym' in '../mmb-dbgsym_4.2+dfsg-1_arm64.deb'.
 dpkg-genbuildinfo --build=any -O../macromoleculebuilder_4.2+dfsg-1_arm64.buildinfo
 dpkg-genchanges --build=any -O../macromoleculebuilder_4.2+dfsg-1_arm64.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-11-26T09:29:41Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
------------------------------------------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


macromoleculebuilder_4.2+dfsg-1_arm64.changes:
----------------------------------------------

Format: 1.8
Date: Fri, 21 Nov 2025 07:44:58 -0500
Source: macromoleculebuilder
Binary: libmmb-dev libmmb4.1 libmmb4.1-dbgsym mmb mmb-dbgsym
Built-For-Profiles: cross nocheck
Architecture: arm64
Version: 4.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
 libmmb-dev - development files of MacroMoleculeBuilder
 libmmb4.1  - shared library of MacroMoleculeBuilder
 mmb        - model the structure and dynamics of macromolecules
Closes: 1113261 1114196
Changes:
 macromoleculebuilder (4.2+dfsg-1) unstable; urgency=medium
 .
   * New upstream release 4.2+dfsg (Closes: #1113261)
   * Update file exclusion list.
   * Review patches.
   * Fix incompatibility with gemmi >= 0.7.0 (Closes: #1114196)
   * Adjust to soname change.
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Files:
 947decea181abaf48f34e8eae21bc931 76976 libdevel optional libmmb-dev_4.2+dfsg-1_arm64.deb
 6f51d37f2f265bae6267c8ae235005b6 24922820 debug optional libmmb4.1-dbgsym_4.2+dfsg-1_arm64.deb
 21c0ed4743bd5e72ec43a1505c51d559 1049992 libs optional libmmb4.1_4.2+dfsg-1_arm64.deb
 cd7acd8d287bbbd9a85e30f23e9c06af 9944 science optional macromoleculebuilder_4.2+dfsg-1_arm64.buildinfo
 85e95a0b0fd90b5d1c6cdc10670ff925 1596928 debug optional mmb-dbgsym_4.2+dfsg-1_arm64.deb
 a19fcf954b2147d250251afcda0197af 26944 science optional mmb_4.2+dfsg-1_arm64.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: macromoleculebuilder
Binary: libmmb-dev libmmb4.1 libmmb4.1-dbgsym mmb mmb-dbgsym
Architecture: arm64
Version: 4.2+dfsg-1
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Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Wed, 26 Nov 2025 09:29:40 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 architecture-properties (= 0.2.6),
 asciidoc-base (= 10.2.1-1),
 asciidoc-common (= 10.2.1-1),
 autoconf (= 2.72-3.1),
 automake (= 1:1.18.1-3),
 autopoint (= 0.23.2-1),
 autotools-dev (= 20240727.1),
 base-files (= 14),
 base-passwd (= 3.6.8),
 bash (= 5.3-1),
 binutils (= 2.45.50.20251125-1),
 binutils-common (= 2.45.50.20251125-1),
 binutils-x86-64-linux-gnu (= 2.45.50.20251125-1),
 bsdextrautils (= 2.41.2-4),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 cmake (= 4.1.1+really3.31.6-2),
 cmake-data (= 4.1.1+really3.31.6-2),
 coreutils (= 9.7-3),
 cpp (= 4:15.2.0-4),
 cpp-15 (= 15.2.0-9),
 cpp-15-x86-64-linux-gnu (= 15.2.0-9),
 cpp-x86-64-linux-gnu (= 4:15.2.0-4),
 dash (= 0.5.12-12),
 debconf (= 1.5.91),
 debhelper (= 13.28),
 debianutils (= 5.23.2),
 dh-autoreconf (= 21),
 dh-strip-nondeterminism (= 1.15.0-1),
 diffutils (= 1:3.12-1),
 docbook-xml (= 4.5-13),
 docbook-xsl (= 1.79.2+dfsg-8),
 dpkg (= 1.22.21),
 dpkg-dev (= 1.22.21),
 dwz (= 0.16-2),
 file (= 1:5.46-5),
 findutils (= 4.10.0-3),
 freeglut3-dev (= 3.4.0-6),
 g++ (= 4:15.2.0-4),
 g++-15 (= 15.2.0-9),
 g++-15-x86-64-linux-gnu (= 15.2.0-9),
 g++-x86-64-linux-gnu (= 4:15.2.0-4),
 gcc (= 4:15.2.0-4),
 gcc-15 (= 15.2.0-9),
 gcc-15-base (= 15.2.0-9),
 gcc-15-x86-64-linux-gnu (= 15.2.0-9),
 gcc-x86-64-linux-gnu (= 4:15.2.0-4),
 gemmi-dev (= 0.7.1+ds-2),
 gettext (= 0.23.2-1),
 gettext-base (= 0.23.2-1),
 grep (= 3.12-1),
 groff-base (= 1.23.0-9),
 gzip (= 1.13-1),
 hostname (= 3.25),
 init-system-helpers (= 1.69),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libarchive13t64 (= 3.7.4-4+b1),
 libasan8 (= 15.2.0-9),
 libatomic1 (= 15.2.0-9),
 libattr1 (= 1:2.5.2-3),
 libaudit-common (= 1:4.1.2-1),
 libaudit1 (= 1:4.1.2-1),
 libbinutils (= 2.45.50.20251125-1),
 libblas-dev (= 3.12.1-7),
 libblas3 (= 3.12.1-7),
 libblkid1 (= 2.41.2-4),
 libbrotli1 (= 1.1.0-2+b7),
 libbsd0 (= 0.12.2-2),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.41-12),
 libc-dev-bin (= 2.41-12),
 libc6 (= 2.41-12),
 libc6-dev (= 2.41-12),
 libcap-ng0 (= 0.8.5-4+b1),
 libcap2 (= 1:2.75-10+b1),
 libcc1-0 (= 15.2.0-9),
 libcom-err2 (= 1.47.2-3+b3),
 libcrypt-dev (= 1:4.5.1-1),
 libcrypt1 (= 1:4.5.1-1),
 libctf-nobfd0 (= 2.45.50.20251125-1),
 libctf0 (= 2.45.50.20251125-1),
 libcurl4t64 (= 8.17.0-3),
 libdb5.3t64 (= 5.3.28+dfsg2-10),
 libdebconfclient0 (= 0.282),
 libdebhelper-perl (= 13.28),
 libdpkg-perl (= 1.22.21),
 libdrm-amdgpu1 (= 2.4.127-1),
 libdrm-common (= 2.4.127-1),
 libdrm2 (= 2.4.127-1),
 libedit2 (= 3.1-20250104-1),
 libelf1t64 (= 0.194-1),
 libexpat1 (= 2.7.3-1),
 libffi8 (= 3.5.2-2),
 libfile-stripnondeterminism-perl (= 1.15.0-1),
 libgbm1 (= 25.2.7-1),
 libgcc-15-dev (= 15.2.0-9),
 libgcc-s1 (= 15.2.0-9),
 libgcrypt20 (= 1.11.2-3),
 libgdbm-compat4t64 (= 1.26-1),
 libgdbm6t64 (= 1.26-1),
 libgfortran5 (= 15.2.0-9),
 libgl-dev (= 1.7.0-1+b2),
 libgl1 (= 1.7.0-1+b2),
 libgl1-mesa-dri (= 25.2.7-1),
 libglu1-mesa (= 9.0.2-1.1+b3),
 libglu1-mesa-dev (= 9.0.2-1.1+b3),
 libglut-dev (= 3.4.0-6),
 libglut3.12 (= 3.4.0-6),
 libglvnd0 (= 1.7.0-1+b2),
 libglx-dev (= 1.7.0-1+b2),
 libglx-mesa0 (= 25.2.7-1),
 libglx0 (= 1.7.0-1+b2),
 libgmp10 (= 2:6.3.0+dfsg-5),
 libgnutls30t64 (= 3.8.11-3),
 libgomp1 (= 15.2.0-9),
 libgpg-error0 (= 1.56-2),
 libgprofng0 (= 2.45.50.20251125-1),
 libgssapi-krb5-2 (= 1.22.1-2),
 libhogweed6t64 (= 3.10.2-1),
 libhwasan0 (= 15.2.0-9),
 libice-dev (= 2:1.1.1-1),
 libice6 (= 2:1.1.1-1),
 libidn2-0 (= 2.3.8-4),
 libisl23 (= 0.27-1),
 libitm1 (= 15.2.0-9),
 libjansson4 (= 2.14-2+b3),
 libjsoncpp26 (= 1.9.6-5),
 libk5crypto3 (= 1.22.1-2),
 libkeyutils1 (= 1.6.3-6),
 libkrb5-3 (= 1.22.1-2),
 libkrb5support0 (= 1.22.1-2),
 liblapack-dev (= 3.12.1-7),
 liblapack3 (= 3.12.1-7),
 libldap2 (= 2.6.10+dfsg-1),
 libllvm19 (= 1:19.1.7-18),
 liblsan0 (= 15.2.0-9),
 liblz4-1 (= 1.10.0-6),
 liblzma5 (= 5.8.1-2),
 libmagic-mgc (= 1:5.46-5),
 libmagic1t64 (= 1:5.46-5),
 libmd0 (= 1.1.0-2+b1),
 libmount1 (= 2.41.2-4),
 libmpc3 (= 1.3.1-2),
 libmpfr6 (= 4.2.2-2),
 libncursesw6 (= 6.5+20251123-1),
 libnettle8t64 (= 3.10.2-1),
 libnghttp2-14 (= 1.64.0-1.1+b1),
 libnghttp3-9 (= 1.12.0-1),
 libngtcp2-16 (= 1.16.0-1),
 libngtcp2-crypto-ossl0 (= 1.16.0-1),
 libopengl-dev (= 1.7.0-1+b2),
 libopengl0 (= 1.7.0-1+b2),
 libopenmm-dev (= 8.1.2+dfsg-12),
 libopenmm8.1 (= 8.1.2+dfsg-12),
 libp11-kit0 (= 0.25.10-1),
 libpam-modules (= 1.7.0-5),
 libpam-modules-bin (= 1.7.0-5),
 libpam-runtime (= 1.7.0-5),
 libpam0g (= 1.7.0-5),
 libpcre2-8-0 (= 10.46-1),
 libperl5.40 (= 5.40.1-7),
 libpipeline1 (= 1.5.8-2),
 libproc2-0 (= 2:4.0.4-9),
 libpsl5t64 (= 0.21.2-1.1+b1),
 libpython3-stdlib (= 3.13.7-1),
 libpython3.13-minimal (= 3.13.9-1),
 libpython3.13-stdlib (= 3.13.9-1),
 libquadmath0 (= 15.2.0-9),
 libreadline8t64 (= 8.3-3),
 librhash1 (= 1.4.6-1.1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-3),
 libsasl2-2 (= 2.1.28+dfsg1-10),
 libsasl2-modules-db (= 2.1.28+dfsg1-10),
 libseccomp2 (= 2.6.0-2),
 libselinux1 (= 3.9-4),
 libsensors-config (= 1:3.6.2-2),
 libsensors5 (= 1:3.6.2-2),
 libseqan2-dev (= 2.4.0+dfsg-16),
 libsframe2 (= 2.45.50.20251125-1),
 libsimbody-dev (= 3.7+dfsg-5),
 libsimbody3.7 (= 3.7+dfsg-5),
 libsimtkmolmodel-dev (= 3.1.0-4.1+b4),
 libsimtkmolmodel-plugins (= 3.1.0-4.1+b4),
 libsimtkmolmodel3.1t64 (= 3.1.0-4.1+b4),
 libsm-dev (= 2:1.2.6-1),
 libsm6 (= 2:1.2.6-1),
 libsmartcols1 (= 2.41.2-4),
 libsqlite3-0 (= 3.46.1-8),
 libssh2-1t64 (= 1.11.1-1),
 libssl3t64 (= 3.5.4-1),
 libstb-dev (= 0.0~git20250907.fede005+ds-1),
 libstb0t64 (= 0.0~git20250907.fede005+ds-1),
 libstdc++-15-dev (= 15.2.0-9),
 libstdc++6 (= 15.2.0-9),
 libsystemd0 (= 259~rc1-1),
 libtasn1-6 (= 4.20.0-2),
 libtinfo6 (= 6.5+20251123-1),
 libtool (= 2.5.4-7),
 libtsan2 (= 15.2.0-9),
 libubsan1 (= 15.2.0-9),
 libuchardet0 (= 0.0.8-2),
 libudev1 (= 259~rc1-1),
 libunistring5 (= 1.3-2),
 libuuid1 (= 2.41.2-4),
 libuv1t64 (= 1.51.0-2),
 libvulkan1 (= 1.4.328.1-1),
 libx11-6 (= 2:1.8.12-1),
 libx11-data (= 2:1.8.12-1),
 libx11-dev (= 2:1.8.12-1),
 libx11-xcb1 (= 2:1.8.12-1),
 libxau-dev (= 1:1.0.11-1),
 libxau6 (= 1:1.0.11-1),
 libxcb-dri3-0 (= 1.17.0-2+b1),
 libxcb-glx0 (= 1.17.0-2+b1),
 libxcb-present0 (= 1.17.0-2+b1),
 libxcb-randr0 (= 1.17.0-2+b1),
 libxcb-shm0 (= 1.17.0-2+b1),
 libxcb-sync1 (= 1.17.0-2+b1),
 libxcb-xfixes0 (= 1.17.0-2+b1),
 libxcb1 (= 1.17.0-2+b1),
 libxcb1-dev (= 1.17.0-2+b1),
 libxdmcp-dev (= 1:1.1.5-1),
 libxdmcp6 (= 1:1.1.5-1),
 libxext-dev (= 2:1.3.4-1+b3),
 libxext6 (= 2:1.3.4-1+b3),
 libxfixes-dev (= 1:6.0.0-2+b4),
 libxfixes3 (= 1:6.0.0-2+b4),
 libxi-dev (= 2:1.8.2-1),
 libxi6 (= 2:1.8.2-1),
 libxml2-16 (= 2.15.1+dfsg-1),
 libxml2-utils (= 2.15.1+dfsg-1),
 libxmu-dev (= 2:1.1.3-3+b4),
 libxmu-headers (= 2:1.1.3-3),
 libxmu6 (= 2:1.1.3-3+b4),
 libxshmfence1 (= 1.3.3-1),
 libxslt1.1 (= 1.1.43-0.3),
 libxt-dev (= 1:1.2.1-1.3),
 libxt6t64 (= 1:1.2.1-1.3),
 libxxf86vm1 (= 1:1.1.4-2),
 libxxhash0 (= 0.8.3-2),
 libz3-4 (= 4.13.3-1),
 libzstd1 (= 1.5.7+dfsg-2),
 linux-libc-dev (= 6.17.8-1),
 m4 (= 1.4.20-2),
 make (= 4.4.1-3),
 man-db (= 2.13.1-1),
 mawk (= 1.3.4.20250131-1),
 media-types (= 14.0.0),
 mesa-libgallium (= 25.2.7-1),
 ncurses-base (= 6.5+20251123-1),
 ncurses-bin (= 6.5+20251123-1),
 netbase (= 6.5),
 openssl-provider-legacy (= 3.5.4-1),
 patch (= 2.8-2),
 perl (= 5.40.1-7),
 perl-base (= 5.40.1-7),
 perl-modules-5.40 (= 5.40.1-7),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:4.0.4-9),
 python3 (= 3.13.7-1),
 python3-minimal (= 3.13.7-1),
 python3.13 (= 3.13.9-1),
 python3.13-minimal (= 3.13.9-1),
 readline-common (= 8.3-3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.26),
 sgml-base (= 1.31+nmu1),
 sgml-data (= 2.0.11+nmu1),
 sysvinit-utils (= 3.15-6),
 tao-pegtl-dev (= 3.2.7-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2025b-5),
 util-linux (= 2.41.2-4),
 uuid-dev (= 2.41.2-4),
 x11-common (= 1:7.7+26),
 x11proto-dev (= 2024.1-1),
 xml-core (= 0.19),
 xorg-sgml-doctools (= 1:1.11-1.1),
 xsltproc (= 1.1.43-0.3),
 xtrans-dev (= 1.6.0-1),
 xz-utils (= 5.8.1-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1763729098"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libmmb-dev_4.2+dfsg-1_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 76976 bytes: control archive=2900 bytes.
     770 bytes,    20 lines      control
    5113 bytes,    72 lines      md5sums
 Package: libmmb-dev
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: arm64
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 560
 Depends: libmmb4.1 (= 4.2+dfsg-1)
 Breaks: libmmblib-dev (<< 4.0.0)
 Replaces: libmmblib-dev (<< 4.0.0)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: development files of MacroMoleculeBuilder
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.
  .
  This package contains the development files.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/include/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/include/MMB/
-rw-r--r-- root/root      8108 2025-01-24 10:51 ./usr/include/MMB/AddBackboneOxygenForces.h
-rw-r--r-- root/root      6293 2025-01-24 10:51 ./usr/include/MMB/AddNASTForces.h
-rw-r--r-- root/root      7275 2025-01-24 10:51 ./usr/include/MMB/AtomSpringContainer.h
-rw-r--r-- root/root      3559 2025-01-24 10:51 ./usr/include/MMB/BaseInteractionParameterReader.h
-rw-r--r-- root/root      3477 2025-01-24 10:51 ./usr/include/MMB/BasePairContainer.h
-rw-r--r-- root/root     42905 2025-01-24 10:51 ./usr/include/MMB/BiopolymerClass.h
-rw-r--r-- root/root      2644 2025-01-24 10:51 ./usr/include/MMB/BiopolymerClassTwoTransformForces.h
-rw-r--r-- root/root     19309 2025-01-24 10:51 ./usr/include/MMB/CalcTransformCorrection.h
-rw-r--r-- root/root      3188 2025-01-24 10:51 ./usr/include/MMB/CenterOfMass.h
-rw-r--r-- root/root      1328 2025-01-24 10:51 ./usr/include/MMB/CifOutput.h
-rw-r--r-- root/root       188 2025-01-24 10:51 ./usr/include/MMB/Constexpr.h
-rw-r--r-- root/root      3848 2025-01-24 10:51 ./usr/include/MMB/ConstraintContainer.h
-rw-r--r-- root/root      3295 2025-01-24 10:51 ./usr/include/MMB/ContactContainer.h
-rw-r--r-- root/root      1793 2025-01-24 10:51 ./usr/include/MMB/DensityContainer.h
-rw-r--r-- root/root      2105 2025-01-24 10:51 ./usr/include/MMB/DensityForce.h
-rw-r--r-- root/root      7794 2025-01-24 10:51 ./usr/include/MMB/DensityMap.h
-rw-r--r-- root/root      1912 2025-01-24 10:51 ./usr/include/MMB/DisplacementContainer.h
-rw-r--r-- root/root      2165 2025-01-24 10:51 ./usr/include/MMB/ElectrostaticPotentialGridForce.h
-rw-r--r-- root/root      3001 2025-01-24 10:51 ./usr/include/MMB/ExportMacros.h
-rw-r--r-- root/root       752 2025-01-24 10:51 ./usr/include/MMB/ExtraMath.h
-rw-r--r-- root/root      1756 2025-01-24 10:51 ./usr/include/MMB/GeometricCenter.h
-rw-r--r-- root/root      4613 2025-01-24 10:51 ./usr/include/MMB/HarmonicVelocityRescalingThermostat.h
-rw-r--r-- root/root       227 2025-01-24 10:51 ./usr/include/MMB/Impossible.h
-rw-r--r-- root/root      4871 2025-01-24 10:51 ./usr/include/MMB/KBBackboneTorsionForce.h
-rw-r--r-- root/root       312 2025-01-24 10:51 ./usr/include/MMB/Lepton.h
-rw-r--r-- root/root      8211 2025-01-24 10:51 ./usr/include/MMB/LigandDroplet.h
-rw-r--r-- root/root     16881 2025-01-24 10:51 ./usr/include/MMB/Ligands.h
-rw-r--r-- root/root     16712 2025-01-24 10:51 ./usr/include/MMB/Ligands.sam.h
-rw-r--r-- root/root      3130 2025-01-24 10:51 ./usr/include/MMB/MMBLogger.h
-rw-r--r-- root/root        91 2025-11-21 12:44 ./usr/include/MMB/MMB_config.h
-rw-r--r-- root/root      5172 2025-01-24 10:51 ./usr/include/MMB/MobilizerContainer.h
-rw-r--r-- root/root      3821 2025-01-24 10:51 ./usr/include/MMB/MoleculeContainer.h
-rw-r--r-- root/root      4156 2025-01-24 10:51 ./usr/include/MMB/MonoAtoms.h
-rw-r--r-- root/root      7486 2025-01-24 10:51 ./usr/include/MMB/Mutation.h
-rw-r--r-- root/root       328 2025-01-24 10:51 ./usr/include/MMB/NTC_FORCE_CLASS.h
-rw-r--r-- root/root      4598 2025-01-24 10:51 ./usr/include/MMB/NTC_PARAMETER_READER.h
-rw-r--r-- root/root      4871 2025-01-24 10:51 ./usr/include/MMB/NtCBackboneTorsionForce.h
-rw-r--r-- root/root      1747 2025-01-24 10:51 ./usr/include/MMB/NtCForces.h
-rw-r--r-- root/root      4568 2025-01-24 10:51 ./usr/include/MMB/NtCInteractionParameterReader.h
-rw-r--r-- root/root      2181 2025-01-24 10:51 ./usr/include/MMB/NtC_Class_Container.h
-rw-r--r-- root/root     15557 2025-01-24 10:51 ./usr/include/MMB/ParameterReader.h
-rw-r--r-- root/root     56249 2025-01-24 10:51 ./usr/include/MMB/ParameterReader_wrapper.h
-rw-r--r-- root/root      5300 2025-01-24 10:51 ./usr/include/MMB/PeriodicParameterReaderUpdater.h
-rw-r--r-- root/root      5408 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndCOMWriter.h
-rw-r--r-- root/root      3151 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndEnergySingleFrameWriter.h
-rw-r--r-- root/root      2002 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndEnergyWriter.h
-rw-r--r-- root/root      4985 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbSingleFrameWriter.h
-rw-r--r-- root/root      4299 2025-01-24 10:51 ./usr/include/MMB/PeriodicScrubber.h
-rw-r--r-- root/root      1615 2025-01-24 10:51 ./usr/include/MMB/ProgressWriter.h
-rw-r--r-- root/root      8487 2025-01-24 10:51 ./usr/include/MMB/RandomizeRNACoordinates.h
-rw-r--r-- root/root      8587 2025-01-24 10:51 ./usr/include/MMB/Repel.h
-rw-r--r-- root/root     23997 2025-01-24 10:51 ./usr/include/MMB/ResidueStretchContainer.h
-rw-r--r-- root/root     12884 2025-01-24 10:51 ./usr/include/MMB/RigidifyFormedHelices.h
-rw-r--r-- root/root      7179 2025-01-24 10:51 ./usr/include/MMB/SetChiMobility.h
-rw-r--r-- root/root      3252 2025-01-24 10:51 ./usr/include/MMB/SetSingleBondMobility.h
-rw-r--r-- root/root      3132 2025-01-24 10:51 ./usr/include/MMB/Spiral.h
-rw-r--r-- root/root      2359 2025-01-24 10:51 ./usr/include/MMB/StackingForceSubsystem.h
-rw-r--r-- root/root     15674 2025-01-24 10:51 ./usr/include/MMB/Sterics.h
-rw-r--r-- root/root      1958 2025-01-24 10:51 ./usr/include/MMB/TetherForce.h
-rw-r--r-- root/root     13450 2025-01-24 10:51 ./usr/include/MMB/Threading.h
-rw-r--r-- root/root      5366 2025-01-24 10:51 ./usr/include/MMB/UnitCellParameters.h
-rw-r--r-- root/root     61244 2025-01-24 10:51 ./usr/include/MMB/Utils.h
-rw-r--r-- root/root     12299 2025-01-24 10:51 ./usr/include/MMB/WadleyKeatingDuartePyleTorsionForce.h
-rw-r--r-- root/root      2817 2025-01-24 10:51 ./usr/include/MMB/Water.h
-rw-r--r-- root/root      3544 2025-01-24 10:51 ./usr/include/MMB/WaterDroplet.h
-rw-r--r-- root/root       845 2025-01-24 10:51 ./usr/include/MMB/superimposer.h
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/cmake/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/cmake/mmb/
-rw-r--r-- root/root      2756 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/cmake/mmb/MmbConfigVersion.cmake
-rw-r--r-- root/root       820 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/cmake/mmb/MmbTargets-release.cmake
-rw-r--r-- root/root      4543 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/cmake/mmb/MmbTargets.cmake
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/libMMB.so -> libMMB.so.4.1
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/pkgconfig/
-rw-r--r-- root/root       195 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/pkgconfig/mmb.pc
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/copyright


libmmb4.1-dbgsym_4.2+dfsg-1_arm64.deb
-------------------------------------

 new Debian package, version 2.0.
 size 24922820 bytes: control archive=560 bytes.
     396 bytes,    13 lines      control
     106 bytes,     1 lines      md5sums
 Package: libmmb4.1-dbgsym
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 30440
 Depends: libmmb4.1 (= 4.2+dfsg-1)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libmmb4.1
 Build-Ids: 043d0c981261862ec4a786f25f45ccb7a4eae312

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/04/
-rw-r--r-- root/root  31159624 2025-11-21 12:44 ./usr/lib/debug/.build-id/04/3d0c981261862ec4a786f25f45ccb7a4eae312.debug
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb4.1-dbgsym -> libmmb4.1


libmmb4.1_4.2+dfsg-1_arm64.deb
------------------------------

 new Debian package, version 2.0.
 size 1049992 bytes: control archive=1000 bytes.
     817 bytes,    18 lines      control
     220 bytes,     3 lines      md5sums
      35 bytes,     1 lines      shlibs
      66 bytes,     2 lines      triggers
 Package: libmmb4.1
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: arm64
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 4378
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libopenmm8.1 (>= 8.1.2+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 14)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: shared library of MacroMoleculeBuilder
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.
  .
  This package contains the shared library.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/
-rw-r--r-- root/root   4468400 2025-11-21 12:44 ./usr/lib/aarch64-linux-gnu/libMMB.so.4.1
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/copyright


mmb-dbgsym_4.2+dfsg-1_arm64.deb
-------------------------------

 new Debian package, version 2.0.
 size 1596928 bytes: control archive=540 bytes.
     360 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: mmb-dbgsym
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: arm64
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 1695
 Depends: mmb (= 4.2+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for mmb
 Build-Ids: 940739c88cb7fa690ee771740ab1716b8df234e3

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/94/
-rw-r--r-- root/root   1724664 2025-11-21 12:44 ./usr/lib/debug/.build-id/94/0739c88cb7fa690ee771740ab1716b8df234e3.debug
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/share/doc/mmb-dbgsym -> mmb


mmb_4.2+dfsg-1_arm64.deb
------------------------

 new Debian package, version 2.0.
 size 26944 bytes: control archive=896 bytes.
     792 bytes,    15 lines      control
     242 bytes,     4 lines      md5sums
 Package: mmb
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: arm64
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 146
 Depends: mmb-common, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libmmb4.1 (>= 4.2+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4)
 Section: science
 Priority: optional
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: model the structure and dynamics of macromolecules
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/bin/
-rwxr-xr-x root/root    134344 2025-11-21 12:44 ./usr/bin/MMB
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/mmb/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/mmb/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/mmb/copyright
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/man/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/man/man1/
-rw-r--r-- root/root       787 2025-11-21 12:44 ./usr/share/man/man1/MMB.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1548 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1628 B]
Fetched 3791 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
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  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
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  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl
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  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
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  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
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  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
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  libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils
  perl-openssl-defaults plzip shared-mime-info t1utils ucf unzip
Suggested packages:
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  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl
  libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip
Recommended packages:
  gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl
  libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl
  libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl
  libdata-dump-perl libhttp-daemon-perl libmailtools-perl
  libxml-sax-expat-perl
The following NEW packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libimport-into-perl libio-html-perl
  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl
  liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libmouse-perl libnamespace-clean-perl
  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
  libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl
  libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl
  libstemmer0d libstrictures-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl
  libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils
  perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:arm64
  shared-mime-info t1utils ucf unzip
0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded.
Need to get 17.0 MB of archives.
After this operation, 72.8 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:5 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:6 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.17.0-3 [401 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9-2 [252 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1 [131 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2 [63.7 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.1-1 [228 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.1-1 [562 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-4 [129 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-4 [639 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.19.0-1 [3327 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:33 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:42 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:52 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.85-1 [24.0 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:72 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:73 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:89 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:112 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.0-1 [143 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1 [42.1 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:125 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:129 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-4 [65.0 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:143 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 lintian all 2.127.0 [1066 kB]
Preconfiguring packages ...
Fetched 17.0 MB in 0s (119 MB/s)
Selecting previously unselected package openssl.
(Reading database ... 28923 files and directories currently installed.)
Preparing to unpack .../000-openssl_3.5.4-1_amd64.deb ...
Unpacking openssl (3.5.4-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../001-ca-certificates_20250419_all.deb ...
Unpacking ca-certificates (20250419) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../002-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../003-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../004-ucf_3.0052_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0052) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../005-libglib2.0-0t64_2.86.2-1_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.86.2-1) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../006-shared-mime-info_2.4-5+b3_amd64.deb ...
Unpacking shared-mime-info (2.4-5+b3) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64.
Preparing to unpack .../007-libngtcp2-crypto-gnutls8_1.16.0-1_amd64.deb ...
Unpacking libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ...
Selecting previously unselected package libcurl3t64-gnutls:amd64.
Preparing to unpack .../008-libcurl3t64-gnutls_8.17.0-3_amd64.deb ...
Unpacking libcurl3t64-gnutls:amd64 (8.17.0-3) ...
Selecting previously unselected package libfyaml0:amd64.
Preparing to unpack .../009-libfyaml0_0.9-2_amd64.deb ...
Unpacking libfyaml0:amd64 (0.9-2) ...
Selecting previously unselected package libstemmer0d:amd64.
Preparing to unpack .../010-libstemmer0d_3.0.1-1_amd64.deb ...
Unpacking libstemmer0d:amd64 (3.0.1-1) ...
Selecting previously unselected package libxmlb2:amd64.
Preparing to unpack .../011-libxmlb2_0.3.24-2_amd64.deb ...
Unpacking libxmlb2:amd64 (0.3.24-2) ...
Selecting previously unselected package libappstream5:amd64.
Preparing to unpack .../012-libappstream5_1.1.1-1_amd64.deb ...
Unpacking libappstream5:amd64 (1.1.1-1) ...
Selecting previously unselected package appstream.
Preparing to unpack .../013-appstream_1.1.1-1_amd64.deb ...
Unpacking appstream (1.1.1-1) ...
Selecting previously unselected package diffstat.
Preparing to unpack .../014-diffstat_1.68-1_amd64.deb ...
Unpacking diffstat (1.68-1) ...
Selecting previously unselected package libassuan9:amd64.
Preparing to unpack .../015-libassuan9_3.0.2-2_amd64.deb ...
Unpacking libassuan9:amd64 (3.0.2-2) ...
Selecting previously unselected package gpgconf.
Preparing to unpack .../016-gpgconf_2.4.8-4_amd64.deb ...
Unpacking gpgconf (2.4.8-4) ...
Selecting previously unselected package libksba8:amd64.
Preparing to unpack .../017-libksba8_1.6.7-2+b1_amd64.deb ...
Unpacking libksba8:amd64 (1.6.7-2+b1) ...
Selecting previously unselected package libnpth0t64:amd64.
Preparing to unpack .../018-libnpth0t64_1.8-3_amd64.deb ...
Unpacking libnpth0t64:amd64 (1.8-3) ...
Selecting previously unselected package gpg.
Preparing to unpack .../019-gpg_2.4.8-4_amd64.deb ...
Unpacking gpg (2.4.8-4) ...
Selecting previously unselected package iso-codes.
Preparing to unpack .../020-iso-codes_4.19.0-1_all.deb ...
Unpacking iso-codes (4.19.0-1) ...
Selecting previously unselected package libaliased-perl.
Preparing to unpack .../021-libaliased-perl_0.34-3_all.deb ...
Unpacking libaliased-perl (0.34-3) ...
Selecting previously unselected package libapt-pkg-perl.
Preparing to unpack .../022-libapt-pkg-perl_0.1.43_amd64.deb ...
Unpacking libapt-pkg-perl (0.1.43) ...
Selecting previously unselected package libb-hooks-op-check-perl:amd64.
Preparing to unpack .../023-libb-hooks-op-check-perl_0.22-3+b2_amd64.deb ...
Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../024-libdynaloader-functions-perl_0.004-2_all.deb ...
Unpacking libdynaloader-functions-perl (0.004-2) ...
Selecting previously unselected package libdevel-callchecker-perl:amd64.
Preparing to unpack .../025-libdevel-callchecker-perl_0.009-2_amd64.deb ...
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Setting up libapt-pkg-perl (0.1.43) ...
Setting up liblz1:amd64 (1.15-3) ...
Setting up libksba8:amd64 (1.6.7-2+b1) ...
Setting up libberkeleydb-perl:amd64 (0.66-2) ...
Setting up plzip (1.12-4) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libnpth0t64:amd64 (1.8-3) ...
Setting up libunicode-utf8-perl (0.62-3) ...
Setting up libmouse-perl:amd64 (2.6.0-1) ...
Setting up libdata-messagepack-perl (1.02-3) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-2) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-2) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libdevel-size-perl (0.85-1) ...
Setting up unzip (6.0-29) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.904.0+ds-1) ...
Setting up libio-interactive-perl (1.027-1) ...
Setting up libtry-tiny-perl (0.32-1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up liblzo2-2:amd64 (2.10-3+b1) ...
Setting up libtime-moment-perl (0.44-2+b4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libconfig-tiny-perl (2.30-1) ...
Setting up libsereal-encoder-perl (5.004+ds-1+b3) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libnet-netmask-perl (2.0003-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libfyaml0:amd64 (0.9-2) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up patchutils (0.4.3-1) ...
Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-4) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ...
Setting up libglib2.0-0t64:amd64 (2.86.2-1) ...
No schema files found: doing nothing.
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libfile-find-rule-perl (0.35-1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-4) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up t1utils (1.41-4) ...
Setting up shared-mime-info (2.4-5+b3) ...
Setting up diffstat (1.68-1) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up ucf (3.0052) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.50-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.28-1) ...
Setting up libdata-validate-domain-perl (0.15-1) ...
Setting up libproc-processtable-perl:amd64 (0.637-1) ...
Setting up libpath-tiny-perl (0.148-1) ...
Setting up lzop (1.04-2) ...
Setting up libassuan9:amd64 (3.0.2-2) ...
Setting up gpgconf (2.4.8-4) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006009-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libstemmer0d:amd64 (3.0.1-1) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.5.4-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up liburi-perl (5.34-2) ...
Setting up iso-codes (4.19.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up gpg (2.4.8-4) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libxmlb2:amd64 (0.3.24-2) ...
Setting up libcurl3t64-gnutls:amd64 (8.17.0-3) ...
Setting up libnet-http-perl (6.24-1) ...
Setting up libtext-markdown-discount-perl (0.18-1) ...
Setting up libappstream5:amd64 (1.1.1-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-2) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
150 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.49-1) ...
Setting up appstream (1.1.1-1) ...
✔ Metadata cache was updated successfully.
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.31-1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up libio-socket-ssl-perl (2.095-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.01-1) ...
Setting up libhtml-form-perl (6.13-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.71-1) ...
Setting up libmodule-runtime-perl (0.018-1) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.81-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.20-1) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Processing triggers for libc-bin (2.41-12) ...
Setting up lintian (2.127.0) ...
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ...
Processing triggers for ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 501
Distribution: unstable
Foreign Architectures: arm64
Host Architecture: arm64
Install-Time: 24
Job: macromoleculebuilder_4.2+dfsg-1
Lintian: pass
Machine Architecture: amd64
Package: macromoleculebuilder
Package-Time: 544
Source-Version: 4.2+dfsg-1
Space: n/a
Status: successful
Version: 4.2+dfsg-1
--------------------------------------------------------------------------------
Finished at 2025-11-26T09:29:41Z
Build needed 00:09:04, no disk space