sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley

+==============================================================================+
| macromoleculebuilder 4.2+dfsg-1 (s390x)      Wed, 26 Nov 2025 22:21:54 +0000 |
+==============================================================================+

Package: macromoleculebuilder
Version: 4.2+dfsg-1
Source Version: 4.2+dfsg-1
Distribution: unstable
Machine Architecture: amd64
Host Architecture: s390x
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-65c5f378-be3f-4139-b075-4921590aad38' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Yv4VFE/resolver-FIfxoS' with '<<RESOLVERDIR>>'

+------------------------------------------------------------------------------+
| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://localhost:3142/debian unstable InRelease [176 kB]
Get:2 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB]
Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB]
Get:4 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB]
Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB]
Get:6 http://localhost:3142/debian unstable/non-free Sources T-2025-11-26-2004.05-F-2025-11-26-2004.05.pdiff [482 B]
Get:7 http://localhost:3142/debian unstable/main Sources T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [83.0 kB]
Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [2307 B]
Get:6 http://localhost:3142/debian unstable/non-free Sources T-2025-11-26-2004.05-F-2025-11-26-2004.05.pdiff [482 B]
Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [77.0 kB]
Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [2307 B]
Get:7 http://localhost:3142/debian unstable/main Sources T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [83.0 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-11-26-2004.05-F-2025-11-26-0204.33.pdiff [77.0 kB]
Get:10 http://localhost:3142/debian unstable/main s390x Packages [9812 kB]
Fetched 10.4 MB in 3s (3674 kB/s)
Reading package lists...
Reading package lists...
Building dependency tree...
Reading state information...
Calculating upgrade...
The following packages will be upgraded:
  libsystemd0 libudev1 linux-libc-dev
3 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.
Need to get 3184 kB of archives.
After this operation, 5120 B of additional disk space will be used.
Get:1 http://localhost:3142/debian unstable/main amd64 libsystemd0 amd64 259~rc2-1 [470 kB]
Get:2 http://localhost:3142/debian unstable/main amd64 libudev1 amd64 259~rc2-1 [157 kB]
Get:3 http://localhost:3142/debian unstable/main s390x linux-libc-dev all 6.17.9-1 [2557 kB]
Fetched 3184 kB in 0s (141 MB/s)
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12910 files and directories currently installed.)
Preparing to unpack .../libsystemd0_259~rc2-1_amd64.deb ...
Unpacking libsystemd0:amd64 (259~rc2-1) over (259~rc1-1) ...
Setting up libsystemd0:amd64 (259~rc2-1) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12910 files and directories currently installed.)
Preparing to unpack .../libudev1_259~rc2-1_amd64.deb ...
Unpacking libudev1:amd64 (259~rc2-1) over (259~rc1-1) ...
Setting up libudev1:amd64 (259~rc2-1) ...
(Reading database ... 
(Reading database ... 5%
(Reading database ... 10%
(Reading database ... 15%
(Reading database ... 20%
(Reading database ... 25%
(Reading database ... 30%
(Reading database ... 35%
(Reading database ... 40%
(Reading database ... 45%
(Reading database ... 50%
(Reading database ... 55%
(Reading database ... 60%
(Reading database ... 65%
(Reading database ... 70%
(Reading database ... 75%
(Reading database ... 80%
(Reading database ... 85%
(Reading database ... 90%
(Reading database ... 95%
(Reading database ... 100%
(Reading database ... 12910 files and directories currently installed.)
Preparing to unpack .../linux-libc-dev_6.17.9-1_all.deb ...
Unpacking linux-libc-dev (6.17.9-1) over (6.17.8-1) ...
Setting up linux-libc-dev (6.17.9-1) ...
Processing triggers for libc-bin (2.41-12) ...

+------------------------------------------------------------------------------+
| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'macromoleculebuilder' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/debichem-team/macromoleculebuilder.git
Please use:
git clone https://salsa.debian.org/debichem-team/macromoleculebuilder.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 2088 kB of source archives.
Get:1 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (dsc) [2471 B]
Get:2 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (tar) [2080 kB]
Get:3 http://localhost:3142/debian unstable/main macromoleculebuilder 4.2+dfsg-1 (diff) [5324 B]
Fetched 2088 kB in 0s (37.5 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Yv4VFE/macromoleculebuilder-4.2+dfsg' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/macromoleculebuilder-Yv4VFE' with '<<BUILDDIR>>'

+------------------------------------------------------------------------------+
| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x
Filtered Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [612 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [966 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1010 B]
Fetched 2588 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  architecture-properties:s390x asciidoc-base asciidoc-common autoconf
  automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils
  cmake cmake-data cpp-15-s390x-linux-gnu cpp-s390x-linux-gnu
  crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism
  docbook-xml docbook-xsl dwz fakeroot file freeglut3-dev:s390x
  g++-15-s390x-linux-gnu g++-s390x-linux-gnu gcc-15-base:s390x
  gcc-15-cross-base gcc-15-s390x-linux-gnu gcc-15-s390x-linux-gnu-base
  gcc-s390x-linux-gnu gemmi-dev:s390x gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13t64 libasan8:s390x
  libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross
  libblas-dev:s390x libblas3:s390x libbrotli1 libbsd0:s390x libc6:s390x
  libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2
  libcrypt-dev:s390x libcrypt1:s390x libcurl4t64 libdebhelper-perl
  libdrm-amdgpu1:s390x libdrm-common libdrm2:s390x libedit2:s390x libelf1t64
  libelf1t64:s390x libexpat1 libexpat1:s390x libfakeroot libffi8 libffi8:s390x
  libfile-stripnondeterminism-perl libgbm1:s390x libgcc-15-dev:s390x
  libgcc-15-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20
  libgfortran5:s390x libgl-dev:s390x libgl1:s390x libgl1-mesa-dri:s390x
  libglu1-mesa:s390x libglu1-mesa-dev:s390x libglut-dev:s390x
  libglut3.12:s390x libglvnd0:s390x libglx-dev:s390x libglx-mesa0:s390x
  libglx0:s390x libgnutls30t64 libgomp1:s390x libgomp1-s390x-cross
  libgpg-error0 libgssapi-krb5-2 libice-dev:s390x libice6:s390x libidn2-0
  libitm1:s390x libitm1-s390x-cross libjsoncpp26 libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack-dev:s390x liblapack3:s390x libldap2
  libllvm19:s390x libmagic-mgc libmagic1t64 libmd0:s390x libncursesw6
  libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0
  libopengl-dev:s390x libopengl0:s390x libopenmm-dev:s390x libopenmm8.1:s390x
  libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 libpython3-stdlib
  libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librhash1
  librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:s390x
  libseqan2-dev libsimbody-dev:s390x libsimbody3.7:s390x
  libsimtkmolmodel-dev:s390x libsimtkmolmodel-plugins:s390x
  libsimtkmolmodel3.1t64:s390x libsm-dev:s390x libsm6:s390x libsqlite3-0
  libssh2-1t64 libstb-dev:s390x libstb0t64:s390x libstdc++-15-dev:s390x
  libstdc++-15-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross
  libtasn1-6 libtinfo6:s390x libtool libubsan1:s390x libubsan1-s390x-cross
  libuchardet0 libunistring5 libuuid1:s390x libuv1t64 libvulkan1:s390x
  libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x
  libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x
  libxcb-dri3-0:s390x libxcb-glx0:s390x libxcb-present0:s390x
  libxcb-randr0:s390x libxcb-shm0:s390x libxcb-sync1:s390x
  libxcb-xfixes0:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x
  libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x
  libxext6:s390x libxfixes-dev:s390x libxfixes3:s390x libxi-dev:s390x
  libxi6:s390x libxml2-16 libxml2-16:s390x libxml2-utils libxmu-dev:s390x
  libxmu-headers libxmu6:s390x libxshmfence1:s390x libxslt1.1 libxt-dev:s390x
  libxt6t64:s390x libxxf86vm1:s390x libz3-4:s390x libzstd1:s390x
  linux-libc-dev-s390x-cross m4 man-db media-types mesa-libgallium:s390x
  netbase po-debconf procps python3 python3-minimal python3.13
  python3.13-minimal readline-common sensible-utils sgml-base sgml-data
  tao-pegtl-dev uuid-dev:s390x x11-common x11proto-dev xml-core
  xorg-sgml-doctools xsltproc xtrans-dev zlib1g:s390x zlib1g-dev:s390x
Suggested packages:
  asciidoc-doc docbook-utils source-highlight autoconf-archive gnu-standards
  autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build
  gcc-15-locales cpp-15-doc cpp-doc dh-make docbook docbook-defguide
  docbook-dsssl dbtoepub docbook-xsl-doc-html | docbook-xsl-doc-pdf
  | docbook-xsl-doc-text | docbook-xsl-doc docbook-xsl-saxon fop libsaxon-java
  libxalan2-java libxslthl-java xalan gcc-15-doc manpages-dev flex bison
  gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev
  gnulib-l10n groff lrzip liblapack-doc:s390x glibc-doc:s390x libc-l10n:s390x
  locales:s390x libnss-nis:s390x libnss-nisplus:s390x manpages-dev:s390x
  rng-tools gnutls-bin krb5-doc krb5-user libice-doc:s390x lm-sensors
  lm-sensors:s390x libsm-doc:s390x libstdc++-15-doc:s390x libtool-doc gfortran
  | fortran95-compiler uuid-runtime:s390x libx11-doc libx11-doc:s390x
  libxcb-doc libxcb-doc:s390x libxext-doc:s390x libxt-doc:s390x m4-doc
  apparmor less www-browser libmail-box-perl python3-doc python3-tk
  python3-venv python3.13-venv python3.13-doc binfmt-support readline-doc
  sgml-base-doc perlsgml w3-recs opensp
Recommended packages:
  xmlto curl | wget | lynx libidn2-0:s390x ca-certificates
  libarchive-cpio-perl libgpg-error-l10n krb5-locales libldap-common libgpm2
  publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers:s390x
  | vulkan-icd:s390x libmail-sendmail-perl psmisc linux-sysctl-defaults
The following NEW packages will be installed:
  architecture-properties:s390x asciidoc-base asciidoc-common autoconf
  automake autopoint autotools-dev binutils-s390x-linux-gnu bsdextrautils
  cmake cmake-data cpp-15-s390x-linux-gnu cpp-s390x-linux-gnu
  crossbuild-essential-s390x debhelper dh-autoreconf dh-strip-nondeterminism
  docbook-xml docbook-xsl dwz fakeroot file freeglut3-dev:s390x
  g++-15-s390x-linux-gnu g++-s390x-linux-gnu gcc-15-base:s390x
  gcc-15-cross-base gcc-15-s390x-linux-gnu gcc-15-s390x-linux-gnu-base
  gcc-s390x-linux-gnu gemmi-dev:s390x gettext gettext-base groff-base
  intltool-debian libarchive-zip-perl libarchive13t64 libasan8:s390x
  libasan8-s390x-cross libatomic1:s390x libatomic1-s390x-cross
  libblas-dev:s390x libblas3:s390x libbrotli1 libbsd0:s390x libc6:s390x
  libc6-dev:s390x libc6-dev-s390x-cross libc6-s390x-cross libcom-err2
  libcrypt-dev:s390x libcrypt1:s390x libcurl4t64 libdebhelper-perl
  libdrm-amdgpu1:s390x libdrm-common libdrm2:s390x libedit2:s390x libelf1t64
  libelf1t64:s390x libexpat1 libexpat1:s390x libfakeroot libffi8 libffi8:s390x
  libfile-stripnondeterminism-perl libgbm1:s390x libgcc-15-dev:s390x
  libgcc-15-dev-s390x-cross libgcc-s1:s390x libgcc-s1-s390x-cross libgcrypt20
  libgfortran5:s390x libgl-dev:s390x libgl1:s390x libgl1-mesa-dri:s390x
  libglu1-mesa:s390x libglu1-mesa-dev:s390x libglut-dev:s390x
  libglut3.12:s390x libglvnd0:s390x libglx-dev:s390x libglx-mesa0:s390x
  libglx0:s390x libgnutls30t64 libgomp1:s390x libgomp1-s390x-cross
  libgpg-error0 libgssapi-krb5-2 libice-dev:s390x libice6:s390x libidn2-0
  libitm1:s390x libitm1-s390x-cross libjsoncpp26 libk5crypto3 libkeyutils1
  libkrb5-3 libkrb5support0 liblapack-dev:s390x liblapack3:s390x libldap2
  libllvm19:s390x libmagic-mgc libmagic1t64 libmd0:s390x libncursesw6
  libnghttp2-14 libnghttp3-9 libngtcp2-16 libngtcp2-crypto-ossl0
  libopengl-dev:s390x libopengl0:s390x libopenmm-dev:s390x libopenmm8.1:s390x
  libp11-kit0 libpipeline1 libproc2-0 libpsl5t64 libpython3-stdlib
  libpython3.13-minimal libpython3.13-stdlib libreadline8t64 librhash1
  librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:s390x
  libseqan2-dev libsimbody-dev:s390x libsimbody3.7:s390x
  libsimtkmolmodel-dev:s390x libsimtkmolmodel-plugins:s390x
  libsimtkmolmodel3.1t64:s390x libsm-dev:s390x libsm6:s390x libsqlite3-0
  libssh2-1t64 libstb-dev:s390x libstb0t64:s390x libstdc++-15-dev:s390x
  libstdc++-15-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross
  libtasn1-6 libtinfo6:s390x libtool libubsan1:s390x libubsan1-s390x-cross
  libuchardet0 libunistring5 libuuid1:s390x libuv1t64 libvulkan1:s390x
  libx11-6 libx11-6:s390x libx11-data libx11-dev libx11-dev:s390x
  libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x
  libxcb-dri3-0:s390x libxcb-glx0:s390x libxcb-present0:s390x
  libxcb-randr0:s390x libxcb-shm0:s390x libxcb-sync1:s390x
  libxcb-xfixes0:s390x libxcb1 libxcb1:s390x libxcb1-dev libxcb1-dev:s390x
  libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x libxext-dev:s390x
  libxext6:s390x libxfixes-dev:s390x libxfixes3:s390x libxi-dev:s390x
  libxi6:s390x libxml2-16 libxml2-16:s390x libxml2-utils libxmu-dev:s390x
  libxmu-headers libxmu6:s390x libxshmfence1:s390x libxslt1.1 libxt-dev:s390x
  libxt6t64:s390x libxxf86vm1:s390x libz3-4:s390x libzstd1:s390x
  linux-libc-dev-s390x-cross m4 man-db media-types mesa-libgallium:s390x
  netbase po-debconf procps python3 python3-minimal python3.13
  python3.13-minimal readline-common sbuild-build-depends-main-dummy:s390x
  sensible-utils sgml-base sgml-data tao-pegtl-dev uuid-dev:s390x x11-common
  x11proto-dev xml-core xorg-sgml-doctools xsltproc xtrans-dev zlib1g:s390x
  zlib1g-dev:s390x
0 upgraded, 226 newly installed, 0 to remove and 0 not upgraded.
Need to get 190 MB of archives.
After this operation, 795 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1040 B]
Get:2 http://localhost:3142/debian unstable/main amd64 libexpat1 amd64 2.7.3-1 [112 kB]
Get:3 http://localhost:3142/debian unstable/main s390x gcc-15-base s390x 15.2.0-9 [53.7 kB]
Get:4 http://localhost:3142/debian unstable/main s390x libgcc-s1 s390x 15.2.0-9 [31.8 kB]
Get:5 http://localhost:3142/debian unstable/main s390x libc6 s390x 2.41-12 [2450 kB]
Get:6 http://localhost:3142/debian unstable/main s390x libexpat1 s390x 2.7.3-1 [110 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libpython3.13-minimal amd64 3.13.9-1 [865 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 python3.13-minimal amd64 3.13.9-1 [2257 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 python3-minimal amd64 3.13.7-1 [27.2 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 media-types all 14.0.0 [30.8 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 netbase all 6.5 [12.4 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libffi8 amd64 3.5.2-2 [25.5 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20251123-1 [136 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 readline-common all 8.3-3 [74.8 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 libreadline8t64 amd64 8.3-3 [191 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 libsqlite3-0 amd64 3.46.1-8 [968 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libpython3.13-stdlib amd64 3.13.9-1 [1965 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 python3.13 amd64 3.13.9-1 [764 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libpython3-stdlib amd64 3.13.7-1 [10.2 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 python3 amd64 3.13.7-1 [28.3 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-9 [65.6 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-9 [882 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.26 [27.0 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.46-5 [338 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.46-5 [109 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.46-5 [43.6 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.2-1 [245 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-2 [68.5 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-9 [1187 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.41.2-4 [98.5 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-2 [42.1 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.1-1 [1469 kB]
Get:33 http://localhost:3142/debian unstable/main s390x architecture-properties s390x 0.2.6 [2340 B]
Get:34 http://localhost:3142/debian unstable/main amd64 asciidoc-common all 10.2.1-1 [104 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 sgml-base all 1.31+nmu1 [10.9 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 xml-core all 0.19 [20.1 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 docbook-xsl all 1.79.2+dfsg-8 [1214 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.15.1+dfsg-2 [641 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libxml2-utils amd64 2.15.1+dfsg-2 [123 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libgpg-error0 amd64 1.56-2 [89.1 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libgcrypt20 amd64 1.11.2-3 [871 kB]
Get:42 http://localhost:3142/debian unstable/main amd64 libxslt1.1 amd64 1.1.43-0.3 [158 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 xsltproc amd64 1.1.43-0.3 [43.7 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 asciidoc-base all 10.2.1-1 [84.9 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.20-2 [325 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3.1 [494 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20240727.1 [60.2 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 automake all 1:1.18.1-3 [878 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.2-1 [772 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.45.50.20251125-1 [1357 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 cmake-data all 4.1.1+really3.31.6-2 [2268 kB]
Get:52 http://localhost:3142/debian unstable/main amd64 libarchive13t64 amd64 3.7.4-4+b1 [349 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libnghttp3-9 amd64 1.12.0-1 [68.4 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libngtcp2-16 amd64 1.16.0-1 [136 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libbrotli1 amd64 1.1.0-2+b7 [307 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libkrb5support0 amd64 1.22.1-2 [33.1 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libcom-err2 amd64 1.47.2-3+b3 [25.0 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libk5crypto3 amd64 1.22.1-2 [81.1 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libkeyutils1 amd64 1.6.3-6 [9456 B]
Get:60 http://localhost:3142/debian unstable/main amd64 libkrb5-3 amd64 1.22.1-2 [337 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.22.1-2 [139 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libidn2-0 amd64 2.3.8-4 [110 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.28+dfsg1-10 [19.8 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libsasl2-2 amd64 2.1.28+dfsg1-10 [57.8 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libldap2 amd64 2.6.10+dfsg-1 [194 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libnghttp2-14 amd64 1.64.0-1.1+b1 [76.2 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-ossl0 amd64 1.16.0-1 [27.5 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libpsl5t64 amd64 0.21.2-1.1+b1 [57.2 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libp11-kit0 amd64 0.25.10-1 [444 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libtasn1-6 amd64 4.20.0-2 [49.9 kB]
Get:72 http://localhost:3142/debian unstable/main amd64 libgnutls30t64 amd64 3.8.11-3 [1509 kB]
Get:73 http://localhost:3142/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-3 [58.3 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libssh2-1t64 amd64 1.11.1-1 [245 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libcurl4t64 amd64 8.17.0-3 [409 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libjsoncpp26 amd64 1.9.6-5 [82.6 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 librhash1 amd64 1.4.6-1.1 [135 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libuv1t64 amd64 1.51.0-2 [155 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 cmake amd64 4.1.1+really3.31.6-2 [12.2 MB]
Get:80 http://localhost:3142/debian unstable/main amd64 gcc-15-s390x-linux-gnu-base amd64 15.2.0-7cross1 [53.5 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 cpp-15-s390x-linux-gnu amd64 15.2.0-7cross1 [10.2 MB]
Get:82 http://localhost:3142/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:15.2.0-4 [5288 B]
Get:83 http://localhost:3142/debian unstable/main amd64 gcc-15-cross-base all 15.2.0-7cross1 [48.9 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libc6-s390x-cross all 2.41-11cross1 [1169 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libgcc-s1-s390x-cross all 15.2.0-7cross1 [31.8 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libgomp1-s390x-cross all 15.2.0-7cross1 [132 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libitm1-s390x-cross all 15.2.0-7cross1 [26.4 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 libatomic1-s390x-cross all 15.2.0-7cross1 [8440 B]
Get:89 http://localhost:3142/debian unstable/main amd64 libasan8-s390x-cross all 15.2.0-7cross1 [2592 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libstdc++6-s390x-cross all 15.2.0-7cross1 [728 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libubsan1-s390x-cross all 15.2.0-7cross1 [1082 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 libgcc-15-dev-s390x-cross all 15.2.0-7cross1 [888 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 gcc-15-s390x-linux-gnu amd64 15.2.0-7cross1 [19.2 MB]
Get:94 http://localhost:3142/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:15.2.0-4 [1444 B]
Get:95 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-s390x-cross all 6.12.38-1cross1 [2465 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libc6-dev-s390x-cross all 2.41-11cross1 [1556 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-s390x-cross all 15.2.0-7cross1 [2444 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 g++-15-s390x-linux-gnu amd64 15.2.0-7cross1 [11.2 MB]
Get:99 http://localhost:3142/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:15.2.0-4 [1200 B]
Get:100 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-s390x all 12.12 [3548 B]
Get:101 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-7 [540 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B]
Get:107 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.194-1 [185 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.2-1 [1687 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB]
Get:112 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 sgml-data all 2.0.11+nmu1 [179 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 docbook-xml all 4.5-13 [77.4 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB]
Get:117 http://localhost:3142/debian unstable/main s390x libglvnd0 s390x 1.7.0-1+b2 [80.9 kB]
Get:118 http://localhost:3142/debian unstable/main s390x libxau6 s390x 1:1.0.11-1 [20.2 kB]
Get:119 http://localhost:3142/debian unstable/main s390x libxdmcp6 s390x 1:1.1.5-1 [28.1 kB]
Get:120 http://localhost:3142/debian unstable/main s390x libxcb1 s390x 1.17.0-2+b1 [144 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libx11-data all 2:1.8.12-1 [343 kB]
Get:122 http://localhost:3142/debian unstable/main s390x libx11-6 s390x 2:1.8.12-1 [821 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libdrm-common all 2.4.127-1 [9060 B]
Get:124 http://localhost:3142/debian unstable/main s390x libdrm2 s390x 2.4.127-1 [39.6 kB]
Get:125 http://localhost:3142/debian unstable/main s390x libx11-xcb1 s390x 2:1.8.12-1 [247 kB]
Get:126 http://localhost:3142/debian unstable/main s390x libxcb-dri3-0 s390x 1.17.0-2+b1 [107 kB]
Get:127 http://localhost:3142/debian unstable/main s390x libxcb-glx0 s390x 1.17.0-2+b1 [122 kB]
Get:128 http://localhost:3142/debian unstable/main s390x libxcb-present0 s390x 1.17.0-2+b1 [106 kB]
Get:129 http://localhost:3142/debian unstable/main s390x libxcb-shm0 s390x 1.17.0-2+b1 [105 kB]
Get:130 http://localhost:3142/debian unstable/main s390x libxcb-xfixes0 s390x 1.17.0-2+b1 [109 kB]
Get:131 http://localhost:3142/debian unstable/main s390x libxext6 s390x 2:1.3.4-1+b3 [50.5 kB]
Get:132 http://localhost:3142/debian unstable/main s390x libxxf86vm1 s390x 1:1.1.4-2 [19.8 kB]
Get:133 http://localhost:3142/debian unstable/main s390x libdrm-amdgpu1 s390x 2.4.127-1 [23.3 kB]
Get:134 http://localhost:3142/debian unstable/main s390x libzstd1 s390x 1.5.7+dfsg-2 [327 kB]
Get:135 http://localhost:3142/debian unstable/main s390x zlib1g s390x 1:1.3.dfsg+really1.3.1-1+b1 [86.9 kB]
Get:136 http://localhost:3142/debian unstable/main s390x libelf1t64 s390x 0.194-1 [186 kB]
Get:137 http://localhost:3142/debian unstable/main s390x libmd0 s390x 1.1.0-2+b1 [33.4 kB]
Get:138 http://localhost:3142/debian unstable/main s390x libbsd0 s390x 0.12.2-2 [133 kB]
Get:139 http://localhost:3142/debian unstable/main s390x libtinfo6 s390x 6.5+20251123-1 [354 kB]
Get:140 http://localhost:3142/debian unstable/main s390x libedit2 s390x 3.1-20250104-1 [96.7 kB]
Get:141 http://localhost:3142/debian unstable/main s390x libffi8 s390x 3.5.2-2 [21.3 kB]
Get:142 http://localhost:3142/debian unstable/main s390x libstdc++6 s390x 15.2.0-9 [782 kB]
Get:143 http://localhost:3142/debian unstable/main s390x libxml2-16 s390x 2.15.1+dfsg-2 [609 kB]
Get:144 http://localhost:3142/debian unstable/main s390x libz3-4 s390x 4.13.3-1 [9095 kB]
Get:145 http://localhost:3142/debian unstable/main s390x libllvm19 s390x 1:19.1.7-18 [29.7 MB]
Get:146 http://localhost:3142/debian unstable/main amd64 libsensors-config all 1:3.6.2-2 [16.2 kB]
Get:147 http://localhost:3142/debian unstable/main s390x libsensors5 s390x 1:3.6.2-2 [37.4 kB]
Get:148 http://localhost:3142/debian unstable/main s390x libxcb-randr0 s390x 1.17.0-2+b1 [117 kB]
Get:149 http://localhost:3142/debian unstable/main s390x libxcb-sync1 s390x 1.17.0-2+b1 [109 kB]
Get:150 http://localhost:3142/debian unstable/main s390x libxshmfence1 s390x 1.3.3-1 [10.9 kB]
Get:151 http://localhost:3142/debian unstable/main s390x mesa-libgallium s390x 25.2.7-1 [7161 kB]
Get:152 http://localhost:3142/debian unstable/main s390x libgbm1 s390x 25.2.7-1 [45.6 kB]
Get:153 http://localhost:3142/debian unstable/main s390x libvulkan1 s390x 1.4.328.1-1 [133 kB]
Get:154 http://localhost:3142/debian unstable/main s390x libgl1-mesa-dri s390x 25.2.7-1 [47.3 kB]
Get:155 http://localhost:3142/debian unstable/main s390x libglx-mesa0 s390x 25.2.7-1 [113 kB]
Get:156 http://localhost:3142/debian unstable/main s390x libglx0 s390x 1.7.0-1+b2 [30.4 kB]
Get:157 http://localhost:3142/debian unstable/main s390x libgl1 s390x 1.7.0-1+b2 [125 kB]
Get:158 http://localhost:3142/debian unstable/main s390x libxi6 s390x 2:1.8.2-1 [80.2 kB]
Get:159 http://localhost:3142/debian unstable/main s390x libglut3.12 s390x 3.4.0-6 [136 kB]
Get:160 http://localhost:3142/debian unstable/main s390x libopengl0 s390x 1.7.0-1+b2 [44.0 kB]
Get:161 http://localhost:3142/debian unstable/main s390x libglu1-mesa s390x 9.0.2-1.1+b3 [196 kB]
Get:162 http://localhost:3142/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB]
Get:163 http://localhost:3142/debian unstable/main amd64 x11proto-dev all 2024.1-1 [603 kB]
Get:164 http://localhost:3142/debian unstable/main s390x libxau-dev s390x 1:1.0.11-1 [23.4 kB]
Get:165 http://localhost:3142/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.5-1 [44.8 kB]
Get:166 http://localhost:3142/debian unstable/main amd64 xtrans-dev all 1.6.0-1 [93.5 kB]
Get:167 http://localhost:3142/debian unstable/main s390x libxcb1-dev s390x 1.17.0-2+b1 [181 kB]
Get:168 http://localhost:3142/debian unstable/main s390x libx11-dev s390x 2:1.8.12-1 [886 kB]
Get:169 http://localhost:3142/debian unstable/main s390x libglx-dev s390x 1.7.0-1+b2 [15.8 kB]
Get:170 http://localhost:3142/debian unstable/main s390x libgl-dev s390x 1.7.0-1+b2 [101 kB]
Get:171 http://localhost:3142/debian unstable/main s390x libopengl-dev s390x 1.7.0-1+b2 [5364 B]
Get:172 http://localhost:3142/debian unstable/main s390x libglu1-mesa-dev s390x 9.0.2-1.1+b3 [233 kB]
Get:173 http://localhost:3142/debian unstable/main s390x libxext-dev s390x 2:1.3.4-1+b3 [105 kB]
Get:174 http://localhost:3142/debian unstable/main amd64 x11-common all 1:7.7+26 [217 kB]
Get:175 http://localhost:3142/debian unstable/main s390x libice6 s390x 2:1.1.1-1 [64.9 kB]
Get:176 http://localhost:3142/debian unstable/main s390x libuuid1 s390x 2.41.2-4 [38.7 kB]
Get:177 http://localhost:3142/debian unstable/main s390x libsm6 s390x 2:1.2.6-1 [37.6 kB]
Get:178 http://localhost:3142/debian unstable/main s390x libxt6t64 s390x 1:1.2.1-1.3 [185 kB]
Get:179 http://localhost:3142/debian unstable/main s390x libice-dev s390x 2:1.1.1-1 [73.9 kB]
Get:180 http://localhost:3142/debian unstable/main s390x libcrypt1 s390x 1:4.5.1-1 [102 kB]
Get:181 http://localhost:3142/debian unstable/main s390x libcrypt-dev s390x 1:4.5.1-1 [131 kB]
Get:182 http://localhost:3142/debian unstable/main s390x libc6-dev s390x 2.41-12 [1559 kB]
Get:183 http://localhost:3142/debian unstable/main s390x uuid-dev s390x 2.41.2-4 [49.7 kB]
Get:184 http://localhost:3142/debian unstable/main s390x libsm-dev s390x 2:1.2.6-1 [40.7 kB]
Get:185 http://localhost:3142/debian unstable/main s390x libxt-dev s390x 1:1.2.1-1.3 [407 kB]
Get:186 http://localhost:3142/debian unstable/main s390x libglut-dev s390x 3.4.0-6 [161 kB]
Get:187 http://localhost:3142/debian unstable/main s390x freeglut3-dev s390x 3.4.0-6 [53.6 kB]
Get:188 http://localhost:3142/debian unstable/main amd64 tao-pegtl-dev all 3.2.7-1 [69.4 kB]
Get:189 http://localhost:3142/debian unstable/main s390x gemmi-dev s390x 0.7.1+ds-2 [1180 kB]
Get:190 http://localhost:3142/debian unstable/main s390x libasan8 s390x 15.2.0-9 [2602 kB]
Get:191 http://localhost:3142/debian unstable/main s390x libatomic1 s390x 15.2.0-9 [8748 B]
Get:192 http://localhost:3142/debian unstable/main s390x libblas3 s390x 3.12.1-7 [193 kB]
Get:193 http://localhost:3142/debian unstable/main s390x libblas-dev s390x 3.12.1-7 [201 kB]
Get:194 http://localhost:3142/debian unstable/main s390x libgomp1 s390x 15.2.0-9 [134 kB]
Get:195 http://localhost:3142/debian unstable/main s390x libitm1 s390x 15.2.0-9 [26.9 kB]
Get:196 http://localhost:3142/debian unstable/main s390x libubsan1 s390x 15.2.0-9 [1083 kB]
Get:197 http://localhost:3142/debian unstable/main s390x libgcc-15-dev s390x 15.2.0-9 [896 kB]
Get:198 http://localhost:3142/debian unstable/main s390x libgfortran5 s390x 15.2.0-9 [501 kB]
Get:199 http://localhost:3142/debian unstable/main s390x liblapack3 s390x 3.12.1-7 [2430 kB]
Get:200 http://localhost:3142/debian unstable/main s390x liblapack-dev s390x 3.12.1-7 [4847 kB]
Get:201 http://localhost:3142/debian unstable/main s390x libopenmm8.1 s390x 8.1.2+dfsg-12 [813 kB]
Get:202 http://localhost:3142/debian unstable/main s390x libopenmm-dev s390x 8.1.2+dfsg-12 [336 kB]
Get:203 http://localhost:3142/debian unstable/main amd64 libseqan2-dev all 2.4.0+dfsg-16 [1216 kB]
Get:204 http://localhost:3142/debian unstable/main s390x libxfixes3 s390x 1:6.0.0-2+b4 [19.9 kB]
Get:205 http://localhost:3142/debian unstable/main s390x libxfixes-dev s390x 1:6.0.0-2+b4 [22.0 kB]
Get:206 http://localhost:3142/debian unstable/main s390x libxi-dev s390x 2:1.8.2-1 [242 kB]
Get:207 http://localhost:3142/debian unstable/main s390x libxmu6 s390x 2:1.1.3-3+b4 [58.8 kB]
Get:208 http://localhost:3142/debian unstable/main amd64 libxau6 amd64 1:1.0.11-1 [20.4 kB]
Get:209 http://localhost:3142/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.5-1 [27.8 kB]
Get:210 http://localhost:3142/debian unstable/main amd64 libxcb1 amd64 1.17.0-2+b1 [144 kB]
Get:211 http://localhost:3142/debian unstable/main amd64 libx11-6 amd64 2:1.8.12-1 [815 kB]
Get:212 http://localhost:3142/debian unstable/main amd64 libxau-dev amd64 1:1.0.11-1 [23.6 kB]
Get:213 http://localhost:3142/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.5-1 [44.3 kB]
Get:214 http://localhost:3142/debian unstable/main amd64 libxcb1-dev amd64 1.17.0-2+b1 [181 kB]
Get:215 http://localhost:3142/debian unstable/main amd64 libx11-dev amd64 2:1.8.12-1 [894 kB]
Get:216 http://localhost:3142/debian unstable/main amd64 libxmu-headers all 2:1.1.3-3 [68.5 kB]
Get:217 http://localhost:3142/debian unstable/main s390x libxmu-dev s390x 2:1.1.3-3+b4 [65.4 kB]
Get:218 http://localhost:3142/debian unstable/main s390x libsimbody3.7 s390x 3.7+dfsg-5 [3194 kB]
Get:219 http://localhost:3142/debian unstable/main s390x libsimbody-dev s390x 3.7+dfsg-5 [2727 kB]
Get:220 http://localhost:3142/debian unstable/main s390x libsimtkmolmodel3.1t64 s390x 3.1.0-4.1+b4 [545 kB]
Get:221 http://localhost:3142/debian unstable/main s390x libsimtkmolmodel-dev s390x 3.1.0-4.1+b4 [1864 kB]
Get:222 http://localhost:3142/debian unstable/main s390x libsimtkmolmodel-plugins s390x 3.1.0-4.1+b4 [18.8 kB]
Get:223 http://localhost:3142/debian unstable/main s390x libstb0t64 s390x 0.0~git20250907.fede005+ds-1 [237 kB]
Get:224 http://localhost:3142/debian unstable/main s390x libstb-dev s390x 0.0~git20250907.fede005+ds-1 [672 kB]
Get:225 http://localhost:3142/debian unstable/main s390x libstdc++-15-dev s390x 15.2.0-9 [2465 kB]
Get:226 http://localhost:3142/debian unstable/main s390x zlib1g-dev s390x 1:1.3.dfsg+really1.3.1-1+b1 [918 kB]
Preconfiguring packages ...
Fetched 190 MB in 7s (27.4 MB/s)
Selecting previously unselected package libexpat1:amd64.
(Reading database ... 12910 files and directories currently installed.)
Preparing to unpack .../libexpat1_2.7.3-1_amd64.deb ...
Unpacking libexpat1:amd64 (2.7.3-1) ...
Selecting previously unselected package gcc-15-base:s390x.
Preparing to unpack .../gcc-15-base_15.2.0-9_s390x.deb ...
Unpacking gcc-15-base:s390x (15.2.0-9) ...
Selecting previously unselected package libgcc-s1:s390x.
Preparing to unpack .../libgcc-s1_15.2.0-9_s390x.deb ...
Unpacking libgcc-s1:s390x (15.2.0-9) ...
Selecting previously unselected package libc6:s390x.
Preparing to unpack .../libc6_2.41-12_s390x.deb ...
Unpacking libc6:s390x (2.41-12) ...
Setting up gcc-15-base:s390x (15.2.0-9) ...
Setting up libgcc-s1:s390x (15.2.0-9) ...
Setting up libc6:s390x (2.41-12) ...
Selecting previously unselected package libexpat1:s390x.
(Reading database ... 13208 files and directories currently installed.)
Preparing to unpack .../libexpat1_2.7.3-1_s390x.deb ...
Unpacking libexpat1:s390x (2.7.3-1) ...
Selecting previously unselected package libpython3.13-minimal:amd64.
Preparing to unpack .../libpython3.13-minimal_3.13.9-1_amd64.deb ...
Unpacking libpython3.13-minimal:amd64 (3.13.9-1) ...
Selecting previously unselected package python3.13-minimal.
Preparing to unpack .../python3.13-minimal_3.13.9-1_amd64.deb ...
Unpacking python3.13-minimal (3.13.9-1) ...
Setting up libpython3.13-minimal:amd64 (3.13.9-1) ...
Setting up libexpat1:amd64 (2.7.3-1) ...
Setting up libexpat1:s390x (2.7.3-1) ...
Setting up python3.13-minimal (3.13.9-1) ...
Selecting previously unselected package python3-minimal.
(Reading database ... 13537 files and directories currently installed.)
Preparing to unpack .../00-python3-minimal_3.13.7-1_amd64.deb ...
Unpacking python3-minimal (3.13.7-1) ...
Selecting previously unselected package media-types.
Preparing to unpack .../01-media-types_14.0.0_all.deb ...
Unpacking media-types (14.0.0) ...
Selecting previously unselected package netbase.
Preparing to unpack .../02-netbase_6.5_all.deb ...
Unpacking netbase (6.5) ...
Selecting previously unselected package libffi8:amd64.
Preparing to unpack .../03-libffi8_3.5.2-2_amd64.deb ...
Unpacking libffi8:amd64 (3.5.2-2) ...
Selecting previously unselected package libncursesw6:amd64.
Preparing to unpack .../04-libncursesw6_6.5+20251123-1_amd64.deb ...
Unpacking libncursesw6:amd64 (6.5+20251123-1) ...
Selecting previously unselected package readline-common.
Preparing to unpack .../05-readline-common_8.3-3_all.deb ...
Unpacking readline-common (8.3-3) ...
Selecting previously unselected package libreadline8t64:amd64.
Preparing to unpack .../06-libreadline8t64_8.3-3_amd64.deb ...
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64'
Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64'
Unpacking libreadline8t64:amd64 (8.3-3) ...
Selecting previously unselected package libsqlite3-0:amd64.
Preparing to unpack .../07-libsqlite3-0_3.46.1-8_amd64.deb ...
Unpacking libsqlite3-0:amd64 (3.46.1-8) ...
Selecting previously unselected package libpython3.13-stdlib:amd64.
Preparing to unpack .../08-libpython3.13-stdlib_3.13.9-1_amd64.deb ...
Unpacking libpython3.13-stdlib:amd64 (3.13.9-1) ...
Selecting previously unselected package python3.13.
Preparing to unpack .../09-python3.13_3.13.9-1_amd64.deb ...
Unpacking python3.13 (3.13.9-1) ...
Selecting previously unselected package libpython3-stdlib:amd64.
Preparing to unpack .../10-libpython3-stdlib_3.13.7-1_amd64.deb ...
Unpacking libpython3-stdlib:amd64 (3.13.7-1) ...
Setting up python3-minimal (3.13.7-1) ...
Selecting previously unselected package python3.
(Reading database ... 14052 files and directories currently installed.)
Preparing to unpack .../000-python3_3.13.7-1_amd64.deb ...
Unpacking python3 (3.13.7-1) ...
Selecting previously unselected package libproc2-0:amd64.
Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ...
Unpacking libproc2-0:amd64 (2:4.0.4-9) ...
Selecting previously unselected package procps.
Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ...
Unpacking procps (2:4.0.4-9) ...
Selecting previously unselected package sensible-utils.
Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ...
Unpacking sensible-utils (0.0.26) ...
Selecting previously unselected package libmagic-mgc.
Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_amd64.deb ...
Unpacking libmagic-mgc (1:5.46-5) ...
Selecting previously unselected package libmagic1t64:amd64.
Preparing to unpack .../005-libmagic1t64_1%3a5.46-5_amd64.deb ...
Unpacking libmagic1t64:amd64 (1:5.46-5) ...
Selecting previously unselected package file.
Preparing to unpack .../006-file_1%3a5.46-5_amd64.deb ...
Unpacking file (1:5.46-5) ...
Selecting previously unselected package gettext-base.
Preparing to unpack .../007-gettext-base_0.23.2-1_amd64.deb ...
Unpacking gettext-base (0.23.2-1) ...
Selecting previously unselected package libuchardet0:amd64.
Preparing to unpack .../008-libuchardet0_0.0.8-2_amd64.deb ...
Unpacking libuchardet0:amd64 (0.0.8-2) ...
Selecting previously unselected package groff-base.
Preparing to unpack .../009-groff-base_1.23.0-9_amd64.deb ...
Unpacking groff-base (1.23.0-9) ...
Selecting previously unselected package bsdextrautils.
Preparing to unpack .../010-bsdextrautils_2.41.2-4_amd64.deb ...
Unpacking bsdextrautils (2.41.2-4) ...
Selecting previously unselected package libpipeline1:amd64.
Preparing to unpack .../011-libpipeline1_1.5.8-2_amd64.deb ...
Unpacking libpipeline1:amd64 (1.5.8-2) ...
Selecting previously unselected package man-db.
Preparing to unpack .../012-man-db_2.13.1-1_amd64.deb ...
Unpacking man-db (2.13.1-1) ...
Selecting previously unselected package architecture-properties:s390x.
Preparing to unpack .../013-architecture-properties_0.2.6_s390x.deb ...
Unpacking architecture-properties:s390x (0.2.6) ...
Selecting previously unselected package asciidoc-common.
Preparing to unpack .../014-asciidoc-common_10.2.1-1_all.deb ...
Unpacking asciidoc-common (10.2.1-1) ...
Selecting previously unselected package sgml-base.
Preparing to unpack .../015-sgml-base_1.31+nmu1_all.deb ...
Unpacking sgml-base (1.31+nmu1) ...
Selecting previously unselected package xml-core.
Preparing to unpack .../016-xml-core_0.19_all.deb ...
Unpacking xml-core (0.19) ...
Selecting previously unselected package docbook-xsl.
Preparing to unpack .../017-docbook-xsl_1.79.2+dfsg-8_all.deb ...
Unpacking docbook-xsl (1.79.2+dfsg-8) ...
Selecting previously unselected package libxml2-16:amd64.
Preparing to unpack .../018-libxml2-16_2.15.1+dfsg-2_amd64.deb ...
Unpacking libxml2-16:amd64 (2.15.1+dfsg-2) ...
Selecting previously unselected package libxml2-utils.
Preparing to unpack .../019-libxml2-utils_2.15.1+dfsg-2_amd64.deb ...
Unpacking libxml2-utils (2.15.1+dfsg-2) ...
Selecting previously unselected package libgpg-error0:amd64.
Preparing to unpack .../020-libgpg-error0_1.56-2_amd64.deb ...
Unpacking libgpg-error0:amd64 (1.56-2) ...
Selecting previously unselected package libgcrypt20:amd64.
Preparing to unpack .../021-libgcrypt20_1.11.2-3_amd64.deb ...
Unpacking libgcrypt20:amd64 (1.11.2-3) ...
Selecting previously unselected package libxslt1.1:amd64.
Preparing to unpack .../022-libxslt1.1_1.1.43-0.3_amd64.deb ...
Unpacking libxslt1.1:amd64 (1.1.43-0.3) ...
Selecting previously unselected package xsltproc.
Preparing to unpack .../023-xsltproc_1.1.43-0.3_amd64.deb ...
Unpacking xsltproc (1.1.43-0.3) ...
Selecting previously unselected package asciidoc-base.
Preparing to unpack .../024-asciidoc-base_10.2.1-1_all.deb ...
Unpacking asciidoc-base (10.2.1-1) ...
Selecting previously unselected package m4.
Preparing to unpack .../025-m4_1.4.20-2_amd64.deb ...
Unpacking m4 (1.4.20-2) ...
Selecting previously unselected package autoconf.
Preparing to unpack .../026-autoconf_2.72-3.1_all.deb ...
Unpacking autoconf (2.72-3.1) ...
Selecting previously unselected package autotools-dev.
Preparing to unpack .../027-autotools-dev_20240727.1_all.deb ...
Unpacking autotools-dev (20240727.1) ...
Selecting previously unselected package automake.
Preparing to unpack .../028-automake_1%3a1.18.1-3_all.deb ...
Unpacking automake (1:1.18.1-3) ...
Selecting previously unselected package autopoint.
Preparing to unpack .../029-autopoint_0.23.2-1_all.deb ...
Unpacking autopoint (0.23.2-1) ...
Selecting previously unselected package binutils-s390x-linux-gnu.
Preparing to unpack .../030-binutils-s390x-linux-gnu_2.45.50.20251125-1_amd64.deb ...
Unpacking binutils-s390x-linux-gnu (2.45.50.20251125-1) ...
Selecting previously unselected package cmake-data.
Preparing to unpack .../031-cmake-data_4.1.1+really3.31.6-2_all.deb ...
Unpacking cmake-data (4.1.1+really3.31.6-2) ...
Selecting previously unselected package libarchive13t64:amd64.
Preparing to unpack .../032-libarchive13t64_3.7.4-4+b1_amd64.deb ...
Unpacking libarchive13t64:amd64 (3.7.4-4+b1) ...
Selecting previously unselected package libnghttp3-9:amd64.
Preparing to unpack .../033-libnghttp3-9_1.12.0-1_amd64.deb ...
Unpacking libnghttp3-9:amd64 (1.12.0-1) ...
Selecting previously unselected package libngtcp2-16:amd64.
Preparing to unpack .../034-libngtcp2-16_1.16.0-1_amd64.deb ...
Unpacking libngtcp2-16:amd64 (1.16.0-1) ...
Selecting previously unselected package libbrotli1:amd64.
Preparing to unpack .../035-libbrotli1_1.1.0-2+b7_amd64.deb ...
Unpacking libbrotli1:amd64 (1.1.0-2+b7) ...
Selecting previously unselected package libkrb5support0:amd64.
Preparing to unpack .../036-libkrb5support0_1.22.1-2_amd64.deb ...
Unpacking libkrb5support0:amd64 (1.22.1-2) ...
Selecting previously unselected package libcom-err2:amd64.
Preparing to unpack .../037-libcom-err2_1.47.2-3+b3_amd64.deb ...
Unpacking libcom-err2:amd64 (1.47.2-3+b3) ...
Selecting previously unselected package libk5crypto3:amd64.
Preparing to unpack .../038-libk5crypto3_1.22.1-2_amd64.deb ...
Unpacking libk5crypto3:amd64 (1.22.1-2) ...
Selecting previously unselected package libkeyutils1:amd64.
Preparing to unpack .../039-libkeyutils1_1.6.3-6_amd64.deb ...
Unpacking libkeyutils1:amd64 (1.6.3-6) ...
Selecting previously unselected package libkrb5-3:amd64.
Preparing to unpack .../040-libkrb5-3_1.22.1-2_amd64.deb ...
Unpacking libkrb5-3:amd64 (1.22.1-2) ...
Selecting previously unselected package libgssapi-krb5-2:amd64.
Preparing to unpack .../041-libgssapi-krb5-2_1.22.1-2_amd64.deb ...
Unpacking libgssapi-krb5-2:amd64 (1.22.1-2) ...
Selecting previously unselected package libunistring5:amd64.
Preparing to unpack .../042-libunistring5_1.3-2_amd64.deb ...
Unpacking libunistring5:amd64 (1.3-2) ...
Selecting previously unselected package libidn2-0:amd64.
Preparing to unpack .../043-libidn2-0_2.3.8-4_amd64.deb ...
Unpacking libidn2-0:amd64 (2.3.8-4) ...
Selecting previously unselected package libsasl2-modules-db:amd64.
Preparing to unpack .../044-libsasl2-modules-db_2.1.28+dfsg1-10_amd64.deb ...
Unpacking libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ...
Selecting previously unselected package libsasl2-2:amd64.
Preparing to unpack .../045-libsasl2-2_2.1.28+dfsg1-10_amd64.deb ...
Unpacking libsasl2-2:amd64 (2.1.28+dfsg1-10) ...
Selecting previously unselected package libldap2:amd64.
Preparing to unpack .../046-libldap2_2.6.10+dfsg-1_amd64.deb ...
Unpacking libldap2:amd64 (2.6.10+dfsg-1) ...
Selecting previously unselected package libnghttp2-14:amd64.
Preparing to unpack .../047-libnghttp2-14_1.64.0-1.1+b1_amd64.deb ...
Unpacking libnghttp2-14:amd64 (1.64.0-1.1+b1) ...
Selecting previously unselected package libngtcp2-crypto-ossl0:amd64.
Preparing to unpack .../048-libngtcp2-crypto-ossl0_1.16.0-1_amd64.deb ...
Unpacking libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ...
Selecting previously unselected package libpsl5t64:amd64.
Preparing to unpack .../049-libpsl5t64_0.21.2-1.1+b1_amd64.deb ...
Unpacking libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Selecting previously unselected package libp11-kit0:amd64.
Preparing to unpack .../050-libp11-kit0_0.25.10-1_amd64.deb ...
Unpacking libp11-kit0:amd64 (0.25.10-1) ...
Selecting previously unselected package libtasn1-6:amd64.
Preparing to unpack .../051-libtasn1-6_4.20.0-2_amd64.deb ...
Unpacking libtasn1-6:amd64 (4.20.0-2) ...
Selecting previously unselected package libgnutls30t64:amd64.
Preparing to unpack .../052-libgnutls30t64_3.8.11-3_amd64.deb ...
Unpacking libgnutls30t64:amd64 (3.8.11-3) ...
Selecting previously unselected package librtmp1:amd64.
Preparing to unpack .../053-librtmp1_2.4+20151223.gitfa8646d.1-3_amd64.deb ...
Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ...
Selecting previously unselected package libssh2-1t64:amd64.
Preparing to unpack .../054-libssh2-1t64_1.11.1-1_amd64.deb ...
Unpacking libssh2-1t64:amd64 (1.11.1-1) ...
Selecting previously unselected package libcurl4t64:amd64.
Preparing to unpack .../055-libcurl4t64_8.17.0-3_amd64.deb ...
Unpacking libcurl4t64:amd64 (8.17.0-3) ...
Selecting previously unselected package libjsoncpp26:amd64.
Preparing to unpack .../056-libjsoncpp26_1.9.6-5_amd64.deb ...
Unpacking libjsoncpp26:amd64 (1.9.6-5) ...
Selecting previously unselected package librhash1:amd64.
Preparing to unpack .../057-librhash1_1.4.6-1.1_amd64.deb ...
Unpacking librhash1:amd64 (1.4.6-1.1) ...
Selecting previously unselected package libuv1t64:amd64.
Preparing to unpack .../058-libuv1t64_1.51.0-2_amd64.deb ...
Unpacking libuv1t64:amd64 (1.51.0-2) ...
Selecting previously unselected package cmake.
Preparing to unpack .../059-cmake_4.1.1+really3.31.6-2_amd64.deb ...
Unpacking cmake (4.1.1+really3.31.6-2) ...
Selecting previously unselected package gcc-15-s390x-linux-gnu-base:amd64.
Preparing to unpack .../060-gcc-15-s390x-linux-gnu-base_15.2.0-7cross1_amd64.deb ...
Unpacking gcc-15-s390x-linux-gnu-base:amd64 (15.2.0-7cross1) ...
Selecting previously unselected package cpp-15-s390x-linux-gnu.
Preparing to unpack .../061-cpp-15-s390x-linux-gnu_15.2.0-7cross1_amd64.deb ...
Unpacking cpp-15-s390x-linux-gnu (15.2.0-7cross1) ...
Selecting previously unselected package cpp-s390x-linux-gnu.
Preparing to unpack .../062-cpp-s390x-linux-gnu_4%3a15.2.0-4_amd64.deb ...
Unpacking cpp-s390x-linux-gnu (4:15.2.0-4) ...
Selecting previously unselected package gcc-15-cross-base.
Preparing to unpack .../063-gcc-15-cross-base_15.2.0-7cross1_all.deb ...
Unpacking gcc-15-cross-base (15.2.0-7cross1) ...
Selecting previously unselected package libc6-s390x-cross.
Preparing to unpack .../064-libc6-s390x-cross_2.41-11cross1_all.deb ...
Unpacking libc6-s390x-cross (2.41-11cross1) ...
Selecting previously unselected package libgcc-s1-s390x-cross.
Preparing to unpack .../065-libgcc-s1-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libgcc-s1-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libgomp1-s390x-cross.
Preparing to unpack .../066-libgomp1-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libgomp1-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libitm1-s390x-cross.
Preparing to unpack .../067-libitm1-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libitm1-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libatomic1-s390x-cross.
Preparing to unpack .../068-libatomic1-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libatomic1-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libasan8-s390x-cross.
Preparing to unpack .../069-libasan8-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libasan8-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libstdc++6-s390x-cross.
Preparing to unpack .../070-libstdc++6-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libstdc++6-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libubsan1-s390x-cross.
Preparing to unpack .../071-libubsan1-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libubsan1-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package libgcc-15-dev-s390x-cross.
Preparing to unpack .../072-libgcc-15-dev-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libgcc-15-dev-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package gcc-15-s390x-linux-gnu.
Preparing to unpack .../073-gcc-15-s390x-linux-gnu_15.2.0-7cross1_amd64.deb ...
Unpacking gcc-15-s390x-linux-gnu (15.2.0-7cross1) ...
Selecting previously unselected package gcc-s390x-linux-gnu.
Preparing to unpack .../074-gcc-s390x-linux-gnu_4%3a15.2.0-4_amd64.deb ...
Unpacking gcc-s390x-linux-gnu (4:15.2.0-4) ...
Selecting previously unselected package linux-libc-dev-s390x-cross.
Preparing to unpack .../075-linux-libc-dev-s390x-cross_6.12.38-1cross1_all.deb ...
Unpacking linux-libc-dev-s390x-cross (6.12.38-1cross1) ...
Selecting previously unselected package libc6-dev-s390x-cross.
Preparing to unpack .../076-libc6-dev-s390x-cross_2.41-11cross1_all.deb ...
Unpacking libc6-dev-s390x-cross (2.41-11cross1) ...
Selecting previously unselected package libstdc++-15-dev-s390x-cross.
Preparing to unpack .../077-libstdc++-15-dev-s390x-cross_15.2.0-7cross1_all.deb ...
Unpacking libstdc++-15-dev-s390x-cross (15.2.0-7cross1) ...
Selecting previously unselected package g++-15-s390x-linux-gnu.
Preparing to unpack .../078-g++-15-s390x-linux-gnu_15.2.0-7cross1_amd64.deb ...
Unpacking g++-15-s390x-linux-gnu (15.2.0-7cross1) ...
Selecting previously unselected package g++-s390x-linux-gnu.
Preparing to unpack .../079-g++-s390x-linux-gnu_4%3a15.2.0-4_amd64.deb ...
Unpacking g++-s390x-linux-gnu (4:15.2.0-4) ...
Selecting previously unselected package crossbuild-essential-s390x.
Preparing to unpack .../080-crossbuild-essential-s390x_12.12_all.deb ...
Unpacking crossbuild-essential-s390x (12.12) ...
Selecting previously unselected package libdebhelper-perl.
Preparing to unpack .../081-libdebhelper-perl_13.28_all.deb ...
Unpacking libdebhelper-perl (13.28) ...
Selecting previously unselected package libtool.
Preparing to unpack .../082-libtool_2.5.4-7_all.deb ...
Unpacking libtool (2.5.4-7) ...
Selecting previously unselected package dh-autoreconf.
Preparing to unpack .../083-dh-autoreconf_21_all.deb ...
Unpacking dh-autoreconf (21) ...
Selecting previously unselected package libarchive-zip-perl.
Preparing to unpack .../084-libarchive-zip-perl_1.68-1_all.deb ...
Unpacking libarchive-zip-perl (1.68-1) ...
Selecting previously unselected package libfile-stripnondeterminism-perl.
Preparing to unpack .../085-libfile-stripnondeterminism-perl_1.15.0-1_all.deb ...
Unpacking libfile-stripnondeterminism-perl (1.15.0-1) ...
Selecting previously unselected package dh-strip-nondeterminism.
Preparing to unpack .../086-dh-strip-nondeterminism_1.15.0-1_all.deb ...
Unpacking dh-strip-nondeterminism (1.15.0-1) ...
Selecting previously unselected package libelf1t64:amd64.
Preparing to unpack .../087-libelf1t64_0.194-1_amd64.deb ...
Unpacking libelf1t64:amd64 (0.194-1) ...
Selecting previously unselected package dwz.
Preparing to unpack .../088-dwz_0.16-2_amd64.deb ...
Unpacking dwz (0.16-2) ...
Selecting previously unselected package gettext.
Preparing to unpack .../089-gettext_0.23.2-1_amd64.deb ...
Unpacking gettext (0.23.2-1) ...
Selecting previously unselected package intltool-debian.
Preparing to unpack .../090-intltool-debian_0.35.0+20060710.6_all.deb ...
Unpacking intltool-debian (0.35.0+20060710.6) ...
Selecting previously unselected package po-debconf.
Preparing to unpack .../091-po-debconf_1.0.21+nmu1_all.deb ...
Unpacking po-debconf (1.0.21+nmu1) ...
Selecting previously unselected package debhelper.
Preparing to unpack .../092-debhelper_13.28_all.deb ...
Unpacking debhelper (13.28) ...
Selecting previously unselected package sgml-data.
Preparing to unpack .../093-sgml-data_2.0.11+nmu1_all.deb ...
Unpacking sgml-data (2.0.11+nmu1) ...
Selecting previously unselected package docbook-xml.
Preparing to unpack .../094-docbook-xml_4.5-13_all.deb ...
Unpacking docbook-xml (4.5-13) ...
Selecting previously unselected package libfakeroot:amd64.
Preparing to unpack .../095-libfakeroot_1.37.1.2-1_amd64.deb ...
Unpacking libfakeroot:amd64 (1.37.1.2-1) ...
Selecting previously unselected package fakeroot.
Preparing to unpack .../096-fakeroot_1.37.1.2-1_amd64.deb ...
Unpacking fakeroot (1.37.1.2-1) ...
Selecting previously unselected package libglvnd0:s390x.
Preparing to unpack .../097-libglvnd0_1.7.0-1+b2_s390x.deb ...
Unpacking libglvnd0:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libxau6:s390x.
Preparing to unpack .../098-libxau6_1%3a1.0.11-1_s390x.deb ...
Unpacking libxau6:s390x (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:s390x.
Preparing to unpack .../099-libxdmcp6_1%3a1.1.5-1_s390x.deb ...
Unpacking libxdmcp6:s390x (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:s390x.
Preparing to unpack .../100-libxcb1_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb1:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libx11-data.
Preparing to unpack .../101-libx11-data_2%3a1.8.12-1_all.deb ...
Unpacking libx11-data (2:1.8.12-1) ...
Selecting previously unselected package libx11-6:s390x.
Preparing to unpack .../102-libx11-6_2%3a1.8.12-1_s390x.deb ...
Unpacking libx11-6:s390x (2:1.8.12-1) ...
Selecting previously unselected package libdrm-common.
Preparing to unpack .../103-libdrm-common_2.4.127-1_all.deb ...
Unpacking libdrm-common (2.4.127-1) ...
Selecting previously unselected package libdrm2:s390x.
Preparing to unpack .../104-libdrm2_2.4.127-1_s390x.deb ...
Unpacking libdrm2:s390x (2.4.127-1) ...
Selecting previously unselected package libx11-xcb1:s390x.
Preparing to unpack .../105-libx11-xcb1_2%3a1.8.12-1_s390x.deb ...
Unpacking libx11-xcb1:s390x (2:1.8.12-1) ...
Selecting previously unselected package libxcb-dri3-0:s390x.
Preparing to unpack .../106-libxcb-dri3-0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-dri3-0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-glx0:s390x.
Preparing to unpack .../107-libxcb-glx0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-glx0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-present0:s390x.
Preparing to unpack .../108-libxcb-present0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-present0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-shm0:s390x.
Preparing to unpack .../109-libxcb-shm0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-shm0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-xfixes0:s390x.
Preparing to unpack .../110-libxcb-xfixes0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-xfixes0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxext6:s390x.
Preparing to unpack .../111-libxext6_2%3a1.3.4-1+b3_s390x.deb ...
Unpacking libxext6:s390x (2:1.3.4-1+b3) ...
Selecting previously unselected package libxxf86vm1:s390x.
Preparing to unpack .../112-libxxf86vm1_1%3a1.1.4-2_s390x.deb ...
Unpacking libxxf86vm1:s390x (1:1.1.4-2) ...
Selecting previously unselected package libdrm-amdgpu1:s390x.
Preparing to unpack .../113-libdrm-amdgpu1_2.4.127-1_s390x.deb ...
Unpacking libdrm-amdgpu1:s390x (2.4.127-1) ...
Selecting previously unselected package libzstd1:s390x.
Preparing to unpack .../114-libzstd1_1.5.7+dfsg-2_s390x.deb ...
Unpacking libzstd1:s390x (1.5.7+dfsg-2) ...
Selecting previously unselected package zlib1g:s390x.
Preparing to unpack .../115-zlib1g_1%3a1.3.dfsg+really1.3.1-1+b1_s390x.deb ...
Unpacking zlib1g:s390x (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package libelf1t64:s390x.
Preparing to unpack .../116-libelf1t64_0.194-1_s390x.deb ...
Unpacking libelf1t64:s390x (0.194-1) ...
Selecting previously unselected package libmd0:s390x.
Preparing to unpack .../117-libmd0_1.1.0-2+b1_s390x.deb ...
Unpacking libmd0:s390x (1.1.0-2+b1) ...
Selecting previously unselected package libbsd0:s390x.
Preparing to unpack .../118-libbsd0_0.12.2-2_s390x.deb ...
Unpacking libbsd0:s390x (0.12.2-2) ...
Selecting previously unselected package libtinfo6:s390x.
Preparing to unpack .../119-libtinfo6_6.5+20251123-1_s390x.deb ...
Unpacking libtinfo6:s390x (6.5+20251123-1) ...
Selecting previously unselected package libedit2:s390x.
Preparing to unpack .../120-libedit2_3.1-20250104-1_s390x.deb ...
Unpacking libedit2:s390x (3.1-20250104-1) ...
Selecting previously unselected package libffi8:s390x.
Preparing to unpack .../121-libffi8_3.5.2-2_s390x.deb ...
Unpacking libffi8:s390x (3.5.2-2) ...
Selecting previously unselected package libstdc++6:s390x.
Preparing to unpack .../122-libstdc++6_15.2.0-9_s390x.deb ...
Unpacking libstdc++6:s390x (15.2.0-9) ...
Selecting previously unselected package libxml2-16:s390x.
Preparing to unpack .../123-libxml2-16_2.15.1+dfsg-2_s390x.deb ...
Unpacking libxml2-16:s390x (2.15.1+dfsg-2) ...
Selecting previously unselected package libz3-4:s390x.
Preparing to unpack .../124-libz3-4_4.13.3-1_s390x.deb ...
Unpacking libz3-4:s390x (4.13.3-1) ...
Selecting previously unselected package libllvm19:s390x.
Preparing to unpack .../125-libllvm19_1%3a19.1.7-18_s390x.deb ...
Unpacking libllvm19:s390x (1:19.1.7-18) ...
Selecting previously unselected package libsensors-config.
Preparing to unpack .../126-libsensors-config_1%3a3.6.2-2_all.deb ...
Unpacking libsensors-config (1:3.6.2-2) ...
Selecting previously unselected package libsensors5:s390x.
Preparing to unpack .../127-libsensors5_1%3a3.6.2-2_s390x.deb ...
Unpacking libsensors5:s390x (1:3.6.2-2) ...
Selecting previously unselected package libxcb-randr0:s390x.
Preparing to unpack .../128-libxcb-randr0_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-randr0:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxcb-sync1:s390x.
Preparing to unpack .../129-libxcb-sync1_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb-sync1:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libxshmfence1:s390x.
Preparing to unpack .../130-libxshmfence1_1.3.3-1_s390x.deb ...
Unpacking libxshmfence1:s390x (1.3.3-1) ...
Selecting previously unselected package mesa-libgallium:s390x.
Preparing to unpack .../131-mesa-libgallium_25.2.7-1_s390x.deb ...
Unpacking mesa-libgallium:s390x (25.2.7-1) ...
Selecting previously unselected package libgbm1:s390x.
Preparing to unpack .../132-libgbm1_25.2.7-1_s390x.deb ...
Unpacking libgbm1:s390x (25.2.7-1) ...
Selecting previously unselected package libvulkan1:s390x.
Preparing to unpack .../133-libvulkan1_1.4.328.1-1_s390x.deb ...
Unpacking libvulkan1:s390x (1.4.328.1-1) ...
Selecting previously unselected package libgl1-mesa-dri:s390x.
Preparing to unpack .../134-libgl1-mesa-dri_25.2.7-1_s390x.deb ...
Unpacking libgl1-mesa-dri:s390x (25.2.7-1) ...
Selecting previously unselected package libglx-mesa0:s390x.
Preparing to unpack .../135-libglx-mesa0_25.2.7-1_s390x.deb ...
Unpacking libglx-mesa0:s390x (25.2.7-1) ...
Selecting previously unselected package libglx0:s390x.
Preparing to unpack .../136-libglx0_1.7.0-1+b2_s390x.deb ...
Unpacking libglx0:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libgl1:s390x.
Preparing to unpack .../137-libgl1_1.7.0-1+b2_s390x.deb ...
Unpacking libgl1:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libxi6:s390x.
Preparing to unpack .../138-libxi6_2%3a1.8.2-1_s390x.deb ...
Unpacking libxi6:s390x (2:1.8.2-1) ...
Selecting previously unselected package libglut3.12:s390x.
Preparing to unpack .../139-libglut3.12_3.4.0-6_s390x.deb ...
Unpacking libglut3.12:s390x (3.4.0-6) ...
Selecting previously unselected package libopengl0:s390x.
Preparing to unpack .../140-libopengl0_1.7.0-1+b2_s390x.deb ...
Unpacking libopengl0:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libglu1-mesa:s390x.
Preparing to unpack .../141-libglu1-mesa_9.0.2-1.1+b3_s390x.deb ...
Unpacking libglu1-mesa:s390x (9.0.2-1.1+b3) ...
Selecting previously unselected package xorg-sgml-doctools.
Preparing to unpack .../142-xorg-sgml-doctools_1%3a1.11-1.1_all.deb ...
Unpacking xorg-sgml-doctools (1:1.11-1.1) ...
Selecting previously unselected package x11proto-dev.
Preparing to unpack .../143-x11proto-dev_2024.1-1_all.deb ...
Unpacking x11proto-dev (2024.1-1) ...
Selecting previously unselected package libxau-dev:s390x.
Preparing to unpack .../144-libxau-dev_1%3a1.0.11-1_s390x.deb ...
Unpacking libxau-dev:s390x (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp-dev:s390x.
Preparing to unpack .../145-libxdmcp-dev_1%3a1.1.5-1_s390x.deb ...
Unpacking libxdmcp-dev:s390x (1:1.1.5-1) ...
Selecting previously unselected package xtrans-dev.
Preparing to unpack .../146-xtrans-dev_1.6.0-1_all.deb ...
Unpacking xtrans-dev (1.6.0-1) ...
Selecting previously unselected package libxcb1-dev:s390x.
Preparing to unpack .../147-libxcb1-dev_1.17.0-2+b1_s390x.deb ...
Unpacking libxcb1-dev:s390x (1.17.0-2+b1) ...
Selecting previously unselected package libx11-dev:s390x.
Preparing to unpack .../148-libx11-dev_2%3a1.8.12-1_s390x.deb ...
Unpacking libx11-dev:s390x (2:1.8.12-1) ...
Selecting previously unselected package libglx-dev:s390x.
Preparing to unpack .../149-libglx-dev_1.7.0-1+b2_s390x.deb ...
Unpacking libglx-dev:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libgl-dev:s390x.
Preparing to unpack .../150-libgl-dev_1.7.0-1+b2_s390x.deb ...
Unpacking libgl-dev:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libopengl-dev:s390x.
Preparing to unpack .../151-libopengl-dev_1.7.0-1+b2_s390x.deb ...
Unpacking libopengl-dev:s390x (1.7.0-1+b2) ...
Selecting previously unselected package libglu1-mesa-dev:s390x.
Preparing to unpack .../152-libglu1-mesa-dev_9.0.2-1.1+b3_s390x.deb ...
Unpacking libglu1-mesa-dev:s390x (9.0.2-1.1+b3) ...
Selecting previously unselected package libxext-dev:s390x.
Preparing to unpack .../153-libxext-dev_2%3a1.3.4-1+b3_s390x.deb ...
Unpacking libxext-dev:s390x (2:1.3.4-1+b3) ...
Selecting previously unselected package x11-common.
Preparing to unpack .../154-x11-common_1%3a7.7+26_all.deb ...
Unpacking x11-common (1:7.7+26) ...
Selecting previously unselected package libice6:s390x.
Preparing to unpack .../155-libice6_2%3a1.1.1-1_s390x.deb ...
Unpacking libice6:s390x (2:1.1.1-1) ...
Selecting previously unselected package libuuid1:s390x.
Preparing to unpack .../156-libuuid1_2.41.2-4_s390x.deb ...
Unpacking libuuid1:s390x (2.41.2-4) ...
Selecting previously unselected package libsm6:s390x.
Preparing to unpack .../157-libsm6_2%3a1.2.6-1_s390x.deb ...
Unpacking libsm6:s390x (2:1.2.6-1) ...
Selecting previously unselected package libxt6t64:s390x.
Preparing to unpack .../158-libxt6t64_1%3a1.2.1-1.3_s390x.deb ...
Unpacking libxt6t64:s390x (1:1.2.1-1.3) ...
Selecting previously unselected package libice-dev:s390x.
Preparing to unpack .../159-libice-dev_2%3a1.1.1-1_s390x.deb ...
Unpacking libice-dev:s390x (2:1.1.1-1) ...
Selecting previously unselected package libcrypt1:s390x.
Preparing to unpack .../160-libcrypt1_1%3a4.5.1-1_s390x.deb ...
Unpacking libcrypt1:s390x (1:4.5.1-1) ...
Selecting previously unselected package libcrypt-dev:s390x.
Preparing to unpack .../161-libcrypt-dev_1%3a4.5.1-1_s390x.deb ...
Unpacking libcrypt-dev:s390x (1:4.5.1-1) ...
Selecting previously unselected package libc6-dev:s390x.
Preparing to unpack .../162-libc6-dev_2.41-12_s390x.deb ...
Unpacking libc6-dev:s390x (2.41-12) ...
Selecting previously unselected package uuid-dev:s390x.
Preparing to unpack .../163-uuid-dev_2.41.2-4_s390x.deb ...
Unpacking uuid-dev:s390x (2.41.2-4) ...
Selecting previously unselected package libsm-dev:s390x.
Preparing to unpack .../164-libsm-dev_2%3a1.2.6-1_s390x.deb ...
Unpacking libsm-dev:s390x (2:1.2.6-1) ...
Selecting previously unselected package libxt-dev:s390x.
Preparing to unpack .../165-libxt-dev_1%3a1.2.1-1.3_s390x.deb ...
Unpacking libxt-dev:s390x (1:1.2.1-1.3) ...
Selecting previously unselected package libglut-dev:s390x.
Preparing to unpack .../166-libglut-dev_3.4.0-6_s390x.deb ...
Unpacking libglut-dev:s390x (3.4.0-6) ...
Selecting previously unselected package freeglut3-dev:s390x.
Preparing to unpack .../167-freeglut3-dev_3.4.0-6_s390x.deb ...
Unpacking freeglut3-dev:s390x (3.4.0-6) ...
Selecting previously unselected package tao-pegtl-dev.
Preparing to unpack .../168-tao-pegtl-dev_3.2.7-1_all.deb ...
Unpacking tao-pegtl-dev (3.2.7-1) ...
Selecting previously unselected package gemmi-dev:s390x.
Preparing to unpack .../169-gemmi-dev_0.7.1+ds-2_s390x.deb ...
Unpacking gemmi-dev:s390x (0.7.1+ds-2) ...
Selecting previously unselected package libasan8:s390x.
Preparing to unpack .../170-libasan8_15.2.0-9_s390x.deb ...
Unpacking libasan8:s390x (15.2.0-9) ...
Selecting previously unselected package libatomic1:s390x.
Preparing to unpack .../171-libatomic1_15.2.0-9_s390x.deb ...
Unpacking libatomic1:s390x (15.2.0-9) ...
Selecting previously unselected package libblas3:s390x.
Preparing to unpack .../172-libblas3_3.12.1-7_s390x.deb ...
Unpacking libblas3:s390x (3.12.1-7) ...
Selecting previously unselected package libblas-dev:s390x.
Preparing to unpack .../173-libblas-dev_3.12.1-7_s390x.deb ...
Unpacking libblas-dev:s390x (3.12.1-7) ...
Selecting previously unselected package libgomp1:s390x.
Preparing to unpack .../174-libgomp1_15.2.0-9_s390x.deb ...
Unpacking libgomp1:s390x (15.2.0-9) ...
Selecting previously unselected package libitm1:s390x.
Preparing to unpack .../175-libitm1_15.2.0-9_s390x.deb ...
Unpacking libitm1:s390x (15.2.0-9) ...
Selecting previously unselected package libubsan1:s390x.
Preparing to unpack .../176-libubsan1_15.2.0-9_s390x.deb ...
Unpacking libubsan1:s390x (15.2.0-9) ...
Selecting previously unselected package libgcc-15-dev:s390x.
Preparing to unpack .../177-libgcc-15-dev_15.2.0-9_s390x.deb ...
Unpacking libgcc-15-dev:s390x (15.2.0-9) ...
Selecting previously unselected package libgfortran5:s390x.
Preparing to unpack .../178-libgfortran5_15.2.0-9_s390x.deb ...
Unpacking libgfortran5:s390x (15.2.0-9) ...
Selecting previously unselected package liblapack3:s390x.
Preparing to unpack .../179-liblapack3_3.12.1-7_s390x.deb ...
Unpacking liblapack3:s390x (3.12.1-7) ...
Selecting previously unselected package liblapack-dev:s390x.
Preparing to unpack .../180-liblapack-dev_3.12.1-7_s390x.deb ...
Unpacking liblapack-dev:s390x (3.12.1-7) ...
Selecting previously unselected package libopenmm8.1:s390x.
Preparing to unpack .../181-libopenmm8.1_8.1.2+dfsg-12_s390x.deb ...
Unpacking libopenmm8.1:s390x (8.1.2+dfsg-12) ...
Selecting previously unselected package libopenmm-dev:s390x.
Preparing to unpack .../182-libopenmm-dev_8.1.2+dfsg-12_s390x.deb ...
Unpacking libopenmm-dev:s390x (8.1.2+dfsg-12) ...
Selecting previously unselected package libseqan2-dev.
Preparing to unpack .../183-libseqan2-dev_2.4.0+dfsg-16_all.deb ...
Unpacking libseqan2-dev (2.4.0+dfsg-16) ...
Selecting previously unselected package libxfixes3:s390x.
Preparing to unpack .../184-libxfixes3_1%3a6.0.0-2+b4_s390x.deb ...
Unpacking libxfixes3:s390x (1:6.0.0-2+b4) ...
Selecting previously unselected package libxfixes-dev:s390x.
Preparing to unpack .../185-libxfixes-dev_1%3a6.0.0-2+b4_s390x.deb ...
Unpacking libxfixes-dev:s390x (1:6.0.0-2+b4) ...
Selecting previously unselected package libxi-dev:s390x.
Preparing to unpack .../186-libxi-dev_2%3a1.8.2-1_s390x.deb ...
Unpacking libxi-dev:s390x (2:1.8.2-1) ...
Selecting previously unselected package libxmu6:s390x.
Preparing to unpack .../187-libxmu6_2%3a1.1.3-3+b4_s390x.deb ...
Unpacking libxmu6:s390x (2:1.1.3-3+b4) ...
Selecting previously unselected package libxau6:amd64.
Preparing to unpack .../188-libxau6_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau6:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp6:amd64.
Preparing to unpack .../189-libxdmcp6_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp6:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1:amd64.
Preparing to unpack .../190-libxcb1_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-6:amd64.
Preparing to unpack .../191-libx11-6_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-6:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxau-dev:amd64.
Preparing to unpack .../192-libxau-dev_1%3a1.0.11-1_amd64.deb ...
Unpacking libxau-dev:amd64 (1:1.0.11-1) ...
Selecting previously unselected package libxdmcp-dev:amd64.
Preparing to unpack .../193-libxdmcp-dev_1%3a1.1.5-1_amd64.deb ...
Unpacking libxdmcp-dev:amd64 (1:1.1.5-1) ...
Selecting previously unselected package libxcb1-dev:amd64.
Preparing to unpack .../194-libxcb1-dev_1.17.0-2+b1_amd64.deb ...
Unpacking libxcb1-dev:amd64 (1.17.0-2+b1) ...
Selecting previously unselected package libx11-dev:amd64.
Preparing to unpack .../195-libx11-dev_2%3a1.8.12-1_amd64.deb ...
Unpacking libx11-dev:amd64 (2:1.8.12-1) ...
Selecting previously unselected package libxmu-headers.
Preparing to unpack .../196-libxmu-headers_2%3a1.1.3-3_all.deb ...
Unpacking libxmu-headers (2:1.1.3-3) ...
Selecting previously unselected package libxmu-dev:s390x.
Preparing to unpack .../197-libxmu-dev_2%3a1.1.3-3+b4_s390x.deb ...
Unpacking libxmu-dev:s390x (2:1.1.3-3+b4) ...
Selecting previously unselected package libsimbody3.7:s390x.
Preparing to unpack .../198-libsimbody3.7_3.7+dfsg-5_s390x.deb ...
Unpacking libsimbody3.7:s390x (3.7+dfsg-5) ...
Selecting previously unselected package libsimbody-dev:s390x.
Preparing to unpack .../199-libsimbody-dev_3.7+dfsg-5_s390x.deb ...
Unpacking libsimbody-dev:s390x (3.7+dfsg-5) ...
Selecting previously unselected package libsimtkmolmodel3.1t64:s390x.
Preparing to unpack .../200-libsimtkmolmodel3.1t64_3.1.0-4.1+b4_s390x.deb ...
Unpacking libsimtkmolmodel3.1t64:s390x (3.1.0-4.1+b4) ...
Selecting previously unselected package libsimtkmolmodel-dev:s390x.
Preparing to unpack .../201-libsimtkmolmodel-dev_3.1.0-4.1+b4_s390x.deb ...
Unpacking libsimtkmolmodel-dev:s390x (3.1.0-4.1+b4) ...
Selecting previously unselected package libsimtkmolmodel-plugins:s390x.
Preparing to unpack .../202-libsimtkmolmodel-plugins_3.1.0-4.1+b4_s390x.deb ...
Unpacking libsimtkmolmodel-plugins:s390x (3.1.0-4.1+b4) ...
Selecting previously unselected package libstb0t64:s390x.
Preparing to unpack .../203-libstb0t64_0.0~git20250907.fede005+ds-1_s390x.deb ...
Unpacking libstb0t64:s390x (0.0~git20250907.fede005+ds-1) ...
Selecting previously unselected package libstb-dev:s390x.
Preparing to unpack .../204-libstb-dev_0.0~git20250907.fede005+ds-1_s390x.deb ...
Unpacking libstb-dev:s390x (0.0~git20250907.fede005+ds-1) ...
Selecting previously unselected package libstdc++-15-dev:s390x.
Preparing to unpack .../205-libstdc++-15-dev_15.2.0-9_s390x.deb ...
Unpacking libstdc++-15-dev:s390x (15.2.0-9) ...
Selecting previously unselected package zlib1g-dev:s390x.
Preparing to unpack .../206-zlib1g-dev_1%3a1.3.dfsg+really1.3.1-1+b1_s390x.deb ...
Unpacking zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1+b1) ...
Selecting previously unselected package sbuild-build-depends-main-dummy:s390x.
Preparing to unpack .../207-sbuild-build-depends-main-dummy_0.invalid.0_s390x.deb ...
Unpacking sbuild-build-depends-main-dummy:s390x (0.invalid.0) ...
Setting up media-types (14.0.0) ...
Setting up libpipeline1:amd64 (1.5.8-2) ...
Setting up libzstd1:s390x (1.5.7+dfsg-2) ...
Setting up libxau6:amd64 (1:1.0.11-1) ...
Setting up libxau6:s390x (1:1.0.11-1) ...
Setting up libxdmcp6:amd64 (1:1.1.5-1) ...
Setting up libxdmcp6:s390x (1:1.1.5-1) ...
Setting up libkeyutils1:amd64 (1.6.3-6) ...
Setting up libxcb1:amd64 (1.17.0-2+b1) ...
Setting up libxcb1:s390x (1.17.0-2+b1) ...
Setting up binutils-s390x-linux-gnu (2.45.50.20251125-1) ...
Setting up libxcb-xfixes0:s390x (1.17.0-2+b1) ...
Setting up bsdextrautils (2.41.2-4) ...
Setting up libgpg-error0:amd64 (1.56-2) ...
Setting up libmagic-mgc (1:5.46-5) ...
Setting up gcc-15-s390x-linux-gnu-base:amd64 (15.2.0-7cross1) ...
Setting up libarchive-zip-perl (1.68-1) ...
Setting up architecture-properties:s390x (0.2.6) ...
Setting up libglvnd0:s390x (1.7.0-1+b2) ...
Setting up libxml2-16:amd64 (2.15.1+dfsg-2) ...
Setting up libxcb-glx0:s390x (1.17.0-2+b1) ...
Setting up libdebhelper-perl (13.28) ...
Setting up libbrotli1:amd64 (1.1.0-2+b7) ...
Setting up libsqlite3-0:amd64 (3.46.1-8) ...
Setting up libc6-s390x-cross (2.41-11cross1) ...
Setting up libuv1t64:amd64 (1.51.0-2) ...
Setting up libmagic1t64:amd64 (1:5.46-5) ...
Setting up x11-common (1:7.7+26) ...
invoke-rc.d: could not determine current runlevel
invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block.
Setting up libsensors-config (1:3.6.2-2) ...
Setting up libnghttp2-14:amd64 (1.64.0-1.1+b1) ...
Setting up gettext-base (0.23.2-1) ...
Setting up m4 (1.4.20-2) ...
Setting up libgcrypt20:amd64 (1.11.2-3) ...
Setting up zlib1g:s390x (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libcrypt1:s390x (1:4.5.1-1) ...
Setting up libxcb-shm0:s390x (1.17.0-2+b1) ...
Setting up libcom-err2:amd64 (1.47.2-3+b3) ...
Setting up file (1:5.46-5) ...
Setting up libgomp1:s390x (15.2.0-9) ...
Setting up libopengl0:s390x (1.7.0-1+b2) ...
Setting up libfakeroot:amd64 (1.37.1.2-1) ...
Setting up libelf1t64:amd64 (0.194-1) ...
Setting up libelf1t64:s390x (0.194-1) ...
Setting up libkrb5support0:amd64 (1.22.1-2) ...
Setting up libseqan2-dev (2.4.0+dfsg-16) ...
Setting up libsasl2-modules-db:amd64 (2.1.28+dfsg1-10) ...
Setting up fakeroot (1.37.1.2-1) ...
update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode
Setting up libxcb-present0:s390x (1.17.0-2+b1) ...
Setting up xtrans-dev (1.6.0-1) ...
Setting up autotools-dev (20240727.1) ...
Setting up linux-libc-dev-s390x-cross (6.12.38-1cross1) ...
Setting up libblas3:s390x (3.12.1-7) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so.3 to provide /usr/lib/s390x-linux-gnu/libblas.so.3 (libblas.so.3-s390x-linux-gnu) in auto mode
Setting up libx11-data (2:1.8.12-1) ...
Setting up libxcb-sync1:s390x (1.17.0-2+b1) ...
Setting up libjsoncpp26:amd64 (1.9.6-5) ...
Setting up libproc2-0:amd64 (2:4.0.4-9) ...
Setting up libunistring5:amd64 (1.3-2) ...
Setting up libatomic1:s390x (15.2.0-9) ...
Setting up libuuid1:s390x (2.41.2-4) ...
Setting up autopoint (0.23.2-1) ...
Setting up libsensors5:s390x (1:3.6.2-2) ...
Setting up libncursesw6:amd64 (6.5+20251123-1) ...
Setting up libk5crypto3:amd64 (1.22.1-2) ...
Setting up libsasl2-2:amd64 (2.1.28+dfsg1-10) ...
Setting up libgfortran5:s390x (15.2.0-9) ...
Setting up libvulkan1:s390x (1.4.328.1-1) ...
Setting up autoconf (2.72-3.1) ...
Setting up libnghttp3-9:amd64 (1.12.0-1) ...
Setting up libffi8:amd64 (3.5.2-2) ...
Setting up libffi8:s390x (3.5.2-2) ...
Setting up dwz (0.16-2) ...
Setting up libmd0:s390x (1.1.0-2+b1) ...
Setting up sensible-utils (0.0.26) ...
Setting up libxshmfence1:s390x (1.3.3-1) ...
Setting up libc6-dev-s390x-cross (2.41-11cross1) ...
Setting up libcrypt-dev:s390x (1:4.5.1-1) ...
Setting up libxcb-randr0:s390x (1.17.0-2+b1) ...
Setting up libasan8:s390x (15.2.0-9) ...
Setting up libuchardet0:amd64 (0.0.8-2) ...
Setting up procps (2:4.0.4-9) ...
Setting up cpp-15-s390x-linux-gnu (15.2.0-7cross1) ...
Setting up libxslt1.1:amd64 (1.1.43-0.3) ...
Setting up libtasn1-6:amd64 (4.20.0-2) ...
Setting up libc6-dev:s390x (2.41-12) ...
Setting up libx11-6:amd64 (2:1.8.12-1) ...
Setting up libx11-6:s390x (2:1.8.12-1) ...
Setting up xorg-sgml-doctools (1:1.11-1.1) ...
Setting up netbase (6.5) ...
Setting up libngtcp2-16:amd64 (1.16.0-1) ...
Setting up sgml-base (1.31+nmu1) ...
Setting up cmake-data (4.1.1+really3.31.6-2) ...
Setting up librhash1:amd64 (1.4.6-1.1) ...
Setting up libkrb5-3:amd64 (1.22.1-2) ...
Setting up libssh2-1t64:amd64 (1.11.1-1) ...
Setting up libopengl-dev:s390x (1.7.0-1+b2) ...
Setting up gcc-15-cross-base (15.2.0-7cross1) ...
Setting up libstb0t64:s390x (0.0~git20250907.fede005+ds-1) ...
Setting up libbsd0:s390x (0.12.2-2) ...
Setting up libdrm-common (2.4.127-1) ...
Setting up libarchive13t64:amd64 (3.7.4-4+b1) ...
Setting up readline-common (8.3-3) ...
Setting up libgomp1-s390x-cross (15.2.0-7cross1) ...
Setting up libldap2:amd64 (2.6.10+dfsg-1) ...
Setting up libstdc++6:s390x (15.2.0-9) ...
Setting up libblas-dev:s390x (3.12.1-7) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/blas/libblas.so to provide /usr/lib/s390x-linux-gnu/libblas.so (libblas.so-s390x-linux-gnu) in auto mode
Setting up tao-pegtl-dev (3.2.7-1) ...
Setting up libitm1:s390x (15.2.0-9) ...
Setting up libtinfo6:s390x (6.5+20251123-1) ...
Setting up automake (1:1.18.1-3) ...
update-alternatives: using /usr/bin/automake-1.18 to provide /usr/bin/automake (automake) in auto mode
Setting up x11proto-dev (2024.1-1) ...
Setting up libfile-stripnondeterminism-perl (1.15.0-1) ...
Setting up libxcb-dri3-0:s390x (1.17.0-2+b1) ...
Setting up libx11-xcb1:s390x (2:1.8.12-1) ...
Setting up libice6:s390x (2:1.1.1-1) ...
Setting up liblapack3:s390x (3.12.1-7) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so.3 to provide /usr/lib/s390x-linux-gnu/liblapack.so.3 (liblapack.so.3-s390x-linux-gnu) in auto mode
Setting up gettext (0.23.2-1) ...
Setting up libxau-dev:amd64 (1:1.0.11-1) ...
Setting up libxau-dev:s390x (1:1.0.11-1) ...
Setting up libice-dev:s390x (2:1.1.1-1) ...
Setting up cpp-s390x-linux-gnu (4:15.2.0-4) ...
Setting up libtool (2.5.4-7) ...
Setting up libxml2-16:s390x (2.15.1+dfsg-2) ...
Setting up libedit2:s390x (3.1-20250104-1) ...
Setting up gemmi-dev:s390x (0.7.1+ds-2) ...
Setting up xsltproc (1.1.43-0.3) ...
Setting up libatomic1-s390x-cross (15.2.0-7cross1) ...
Setting up libxext6:s390x (2:1.3.4-1+b3) ...
Setting up libidn2-0:amd64 (2.3.8-4) ...
Setting up libxxf86vm1:s390x (1:1.1.4-2) ...
Setting up intltool-debian (0.35.0+20060710.6) ...
Setting up dh-autoreconf (21) ...
Setting up libxdmcp-dev:amd64 (1:1.1.5-1) ...
Setting up libxdmcp-dev:s390x (1:1.1.5-1) ...
Setting up libz3-4:s390x (4.13.3-1) ...
Setting up libxfixes3:s390x (1:6.0.0-2+b4) ...
Setting up uuid-dev:s390x (2.41.2-4) ...
Setting up libp11-kit0:amd64 (0.25.10-1) ...
Setting up liblapack-dev:s390x (3.12.1-7) ...
update-alternatives: using /usr/lib/s390x-linux-gnu/lapack/liblapack.so to provide /usr/lib/s390x-linux-gnu/liblapack.so (liblapack.so-s390x-linux-gnu) in auto mode
Setting up libgssapi-krb5-2:amd64 (1.22.1-2) ...
Setting up libgcc-s1-s390x-cross (15.2.0-7cross1) ...
Setting up libngtcp2-crypto-ossl0:amd64 (1.16.0-1) ...
Setting up libreadline8t64:amd64 (8.3-3) ...
Setting up libubsan1:s390x (15.2.0-9) ...
Setting up dh-strip-nondeterminism (1.15.0-1) ...
Setting up zlib1g-dev:s390x (1:1.3.dfsg+really1.3.1-1+b1) ...
Setting up libitm1-s390x-cross (15.2.0-7cross1) ...
Setting up libdrm2:s390x (2.4.127-1) ...
Setting up libstb-dev:s390x (0.0~git20250907.fede005+ds-1) ...
Setting up groff-base (1.23.0-9) ...
Setting up xml-core (0.19) ...
Setting up libglu1-mesa:s390x (9.0.2-1.1+b3) ...
Setting up libxml2-utils (2.15.1+dfsg-2) ...
Setting up libopenmm8.1:s390x (8.1.2+dfsg-12) ...
Setting up libsm6:s390x (2:1.2.6-1) ...
Setting up libpython3.13-stdlib:amd64 (3.13.9-1) ...
Setting up libpython3-stdlib:amd64 (3.13.7-1) ...
Setting up libdrm-amdgpu1:s390x (2.4.127-1) ...
Setting up libgnutls30t64:amd64 (3.8.11-3) ...
Setting up libllvm19:s390x (1:19.1.7-18) ...
Setting up mesa-libgallium:s390x (25.2.7-1) ...
Setting up libgcc-15-dev:s390x (15.2.0-9) ...
Setting up libxcb1-dev:amd64 (1.17.0-2+b1) ...
Setting up libxcb1-dev:s390x (1.17.0-2+b1) ...
Setting up libxi6:s390x (2:1.8.2-1) ...
Setting up libgbm1:s390x (25.2.7-1) ...
Setting up python3.13 (3.13.9-1) ...
Setting up libsm-dev:s390x (2:1.2.6-1) ...
Setting up libstdc++6-s390x-cross (15.2.0-7cross1) ...
Setting up po-debconf (1.0.21+nmu1) ...
Setting up libgl1-mesa-dri:s390x (25.2.7-1) ...
Setting up libpsl5t64:amd64 (0.21.2-1.1+b1) ...
Setting up libx11-dev:amd64 (2:1.8.12-1) ...
Setting up libx11-dev:s390x (2:1.8.12-1) ...
Setting up python3 (3.13.7-1) ...
Setting up man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up libasan8-s390x-cross (15.2.0-7cross1) ...
Setting up libopenmm-dev:s390x (8.1.2+dfsg-12) ...
Setting up libxfixes-dev:s390x (1:6.0.0-2+b4) ...
Setting up asciidoc-common (10.2.1-1) ...
Setting up libstdc++-15-dev:s390x (15.2.0-9) ...
Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-3) ...
Setting up libxt6t64:s390x (1:1.2.1-1.3) ...
Setting up libxext-dev:s390x (2:1.3.4-1+b3) ...
Setting up libxi-dev:s390x (2:1.8.2-1) ...
Setting up libxmu-headers (2:1.1.3-3) ...
Setting up libxmu6:s390x (2:1.1.3-3+b4) ...
Setting up libubsan1-s390x-cross (15.2.0-7cross1) ...
Setting up libglx-mesa0:s390x (25.2.7-1) ...
Setting up libglx0:s390x (1.7.0-1+b2) ...
Setting up libcurl4t64:amd64 (8.17.0-3) ...
Setting up debhelper (13.28) ...
Setting up libgl1:s390x (1.7.0-1+b2) ...
Setting up libxt-dev:s390x (1:1.2.1-1.3) ...
Setting up libglut3.12:s390x (3.4.0-6) ...
Setting up libgcc-15-dev-s390x-cross (15.2.0-7cross1) ...
Setting up libsimbody3.7:s390x (3.7+dfsg-5) ...
Setting up cmake (4.1.1+really3.31.6-2) ...
Setting up libglx-dev:s390x (1.7.0-1+b2) ...
Setting up gcc-15-s390x-linux-gnu (15.2.0-7cross1) ...
Setting up libgl-dev:s390x (1.7.0-1+b2) ...
Setting up libsimtkmolmodel3.1t64:s390x (3.1.0-4.1+b4) ...
Setting up libxmu-dev:s390x (2:1.1.3-3+b4) ...
Setting up libstdc++-15-dev-s390x-cross (15.2.0-7cross1) ...
Setting up gcc-s390x-linux-gnu (4:15.2.0-4) ...
Setting up libglu1-mesa-dev:s390x (9.0.2-1.1+b3) ...
Setting up libglut-dev:s390x (3.4.0-6) ...
Setting up libsimtkmolmodel-plugins:s390x (3.1.0-4.1+b4) ...
Setting up libsimtkmolmodel-dev:s390x (3.1.0-4.1+b4) ...
Setting up g++-15-s390x-linux-gnu (15.2.0-7cross1) ...
Setting up g++-s390x-linux-gnu (4:15.2.0-4) ...
Setting up freeglut3-dev:s390x (3.4.0-6) ...
Setting up crossbuild-essential-s390x (12.12) ...
Setting up libsimbody-dev:s390x (3.7+dfsg-5) ...
Processing triggers for libc-bin (2.41-12) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up docbook-xsl (1.79.2+dfsg-8) ...
Setting up sgml-data (2.0.11+nmu1) ...
Setting up asciidoc-base (10.2.1-1) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up docbook-xml (4.5-13) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (s390x included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64)
Toolchain package versions: binutils_2.45.50.20251125-1 dpkg-dev_1.22.21 g++-15_15.2.0-9 gcc-15_15.2.0-9 libc6-dev_2.41-12 libstdc++-15-dev_15.2.0-9 libstdc++-15-dev-s390x-cross_15.2.0-7cross1 libstdc++6_15.2.0-9 libstdc++6-s390x-cross_15.2.0-7cross1 linux-libc-dev_6.17.9-1
Package versions: apt_3.1.12 apt-utils_3.1.12 architecture-properties_0.2.6 asciidoc-base_10.2.1-1 asciidoc-common_10.2.1-1 autoconf_2.72-3.1 automake_1:1.18.1-3 autopoint_0.23.2-1 autotools-dev_20240727.1 base-files_14 base-passwd_3.6.8 bash_5.3-1 binutils_2.45.50.20251125-1 binutils-common_2.45.50.20251125-1 binutils-s390x-linux-gnu_2.45.50.20251125-1 binutils-x86-64-linux-gnu_2.45.50.20251125-1 bsdextrautils_2.41.2-4 bsdutils_1:2.41.2-4 build-essential_12.12 bzip2_1.0.8-6 cmake_4.1.1+really3.31.6-2 cmake-data_4.1.1+really3.31.6-2 coreutils_9.7-3 cpp_4:15.2.0-4 cpp-15_15.2.0-9 cpp-15-s390x-linux-gnu_15.2.0-7cross1 cpp-15-x86-64-linux-gnu_15.2.0-9 cpp-s390x-linux-gnu_4:15.2.0-4 cpp-x86-64-linux-gnu_4:15.2.0-4 crossbuild-essential-s390x_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.28 debian-archive-keyring_2025.1 debianutils_5.23.2 dh-autoreconf_21 dh-strip-nondeterminism_1.15.0-1 diffutils_1:3.12-1 docbook-xml_4.5-13 docbook-xsl_1.79.2+dfsg-8 dpkg_1.22.21 dpkg-dev_1.22.21 dwz_0.16-2 fakeroot_1.37.1.2-1 file_1:5.46-5 findutils_4.10.0-3 freeglut3-dev_3.4.0-6 g++_4:15.2.0-4 g++-15_15.2.0-9 g++-15-s390x-linux-gnu_15.2.0-7cross1 g++-15-x86-64-linux-gnu_15.2.0-9 g++-s390x-linux-gnu_4:15.2.0-4 g++-x86-64-linux-gnu_4:15.2.0-4 gcc_4:15.2.0-4 gcc-15_15.2.0-9 gcc-15-base_15.2.0-9 gcc-15-cross-base_15.2.0-7cross1 gcc-15-s390x-linux-gnu_15.2.0-7cross1 gcc-15-s390x-linux-gnu-base_15.2.0-7cross1 gcc-15-x86-64-linux-gnu_15.2.0-9 gcc-s390x-linux-gnu_4:15.2.0-4 gcc-x86-64-linux-gnu_4:15.2.0-4 gemmi-dev_0.7.1+ds-2 gettext_0.23.2-1 gettext-base_0.23.2-1 grep_3.12-1 groff-base_1.23.0-9 gzip_1.13-1 hostname_3.25 init-system-helpers_1.69 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.1.12 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-4+b1 libasan8_15.2.0-9 libasan8-s390x-cross_15.2.0-7cross1 libatomic1_15.2.0-9 libatomic1-s390x-cross_15.2.0-7cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.1.2-1 libaudit1_1:4.1.2-1 libbinutils_2.45.50.20251125-1 libblas-dev_3.12.1-7 libblas3_3.12.1-7 libblkid1_2.41.2-4 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-12 libc-dev-bin_2.41-12 libc6_2.41-12 libc6-dev_2.41-12 libc6-dev-s390x-cross_2.41-11cross1 libc6-s390x-cross_2.41-11cross1 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-10+b1 libcc1-0_15.2.0-9 libcom-err2_1.47.2-3+b3 libcrypt-dev_1:4.5.1-1 libcrypt1_1:4.5.1-1 libctf-nobfd0_2.45.50.20251125-1 libctf0_2.45.50.20251125-1 libcurl4t64_8.17.0-3 libdb5.3t64_5.3.28+dfsg2-10 libdebconfclient0_0.282 libdebhelper-perl_13.28 libdpkg-perl_1.22.21 libdrm-amdgpu1_2.4.127-1 libdrm-common_2.4.127-1 libdrm2_2.4.127-1 libedit2_3.1-20250104-1 libelf1t64_0.194-1 libexpat1_2.7.3-1 libfakeroot_1.37.1.2-1 libffi8_3.5.2-2 libfile-stripnondeterminism-perl_1.15.0-1 libgbm1_25.2.7-1 libgcc-15-dev_15.2.0-9 libgcc-15-dev-s390x-cross_15.2.0-7cross1 libgcc-s1_15.2.0-9 libgcc-s1-s390x-cross_15.2.0-7cross1 libgcrypt20_1.11.2-3 libgdbm-compat4t64_1.26-1 libgdbm6t64_1.26-1 libgfortran5_15.2.0-9 libgl-dev_1.7.0-1+b2 libgl1_1.7.0-1+b2 libgl1-mesa-dri_25.2.7-1 libglu1-mesa_9.0.2-1.1+b3 libglu1-mesa-dev_9.0.2-1.1+b3 libglut-dev_3.4.0-6 libglut3.12_3.4.0-6 libglvnd0_1.7.0-1+b2 libglx-dev_1.7.0-1+b2 libglx-mesa0_25.2.7-1 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-5 libgnutls30t64_3.8.11-3 libgomp1_15.2.0-9 libgomp1-s390x-cross_15.2.0-7cross1 libgpg-error0_1.56-2 libgprofng0_2.45.50.20251125-1 libgssapi-krb5-2_1.22.1-2 libhogweed6t64_3.10.2-1 libhwasan0_15.2.0-9 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libidn2-0_2.3.8-4 libisl23_0.27-1 libitm1_15.2.0-9 libitm1-s390x-cross_15.2.0-7cross1 libjansson4_2.14-2+b3 libjsoncpp26_1.9.6-5 libk5crypto3_1.22.1-2 libkeyutils1_1.6.3-6 libkrb5-3_1.22.1-2 libkrb5support0_1.22.1-2 liblapack-dev_3.12.1-7 liblapack3_3.12.1-7 libldap2_2.6.10+dfsg-1 libllvm19_1:19.1.7-18 liblsan0_15.2.0-9 liblz4-1_1.10.0-6 liblzma5_5.8.1-2 libmagic-mgc_1:5.46-5 libmagic1t64_1:5.46-5 libmd0_1.1.0-2+b1 libmount1_2.41.2-4 libmpc3_1.3.1-2 libmpfr6_4.2.2-2 libncursesw6_6.5+20251123-1 libnettle8t64_3.10.2-1 libnghttp2-14_1.64.0-1.1+b1 libnghttp3-9_1.12.0-1 libngtcp2-16_1.16.0-1 libngtcp2-crypto-ossl0_1.16.0-1 libopengl-dev_1.7.0-1+b2 libopengl0_1.7.0-1+b2 libopenmm-dev_8.1.2+dfsg-12 libopenmm8.1_8.1.2+dfsg-12 libp11-kit0_0.25.10-1 libpam-modules_1.7.0-5 libpam-modules-bin_1.7.0-5 libpam-runtime_1.7.0-5 libpam0g_1.7.0-5 libpcre2-8-0_10.46-1 libperl5.40_5.40.1-7 libpipeline1_1.5.8-2 libproc2-0_2:4.0.4-9 libpsl5t64_0.21.2-1.1+b1 libpython3-stdlib_3.13.7-1 libpython3.13-minimal_3.13.9-1 libpython3.13-stdlib_3.13.9-1 libquadmath0_15.2.0-9 libreadline8t64_8.3-3 librhash1_1.4.6-1.1 librtmp1_2.4+20151223.gitfa8646d.1-3 libsasl2-2_2.1.28+dfsg1-10 libsasl2-modules-db_2.1.28+dfsg1-10 libseccomp2_2.6.0-2 libselinux1_3.9-4 libsemanage-common_3.9-1 libsemanage2_3.9-1 libsensors-config_1:3.6.2-2 libsensors5_1:3.6.2-2 libsepol2_3.9-2 libseqan2-dev_2.4.0+dfsg-16 libsframe2_2.45.50.20251125-1 libsimbody-dev_3.7+dfsg-5 libsimbody3.7_3.7+dfsg-5 libsimtkmolmodel-dev_3.1.0-4.1+b4 libsimtkmolmodel-plugins_3.1.0-4.1+b4 libsimtkmolmodel3.1t64_3.1.0-4.1+b4 libsm-dev_2:1.2.6-1 libsm6_2:1.2.6-1 libsmartcols1_2.41.2-4 libsqlite3-0_3.46.1-8 libssh2-1t64_1.11.1-1 libssl3t64_3.5.4-1 libstb-dev_0.0~git20250907.fede005+ds-1 libstb0t64_0.0~git20250907.fede005+ds-1 libstdc++-15-dev_15.2.0-9 libstdc++-15-dev-s390x-cross_15.2.0-7cross1 libstdc++6_15.2.0-9 libstdc++6-s390x-cross_15.2.0-7cross1 libsystemd0_259~rc2-1 libtasn1-6_4.20.0-2 libtinfo6_6.5+20251123-1 libtool_2.5.4-7 libtsan2_15.2.0-9 libubsan1_15.2.0-9 libubsan1-s390x-cross_15.2.0-7cross1 libuchardet0_0.0.8-2 libudev1_259~rc2-1 libunistring5_1.3-2 libuuid1_2.41.2-4 libuv1t64_1.51.0-2 libvulkan1_1.4.328.1-1 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libx11-xcb1_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-dri3-0_1.17.0-2+b1 libxcb-glx0_1.17.0-2+b1 libxcb-present0_1.17.0-2+b1 libxcb-randr0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-sync1_1.17.0-2+b1 libxcb-xfixes0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxfixes-dev_1:6.0.0-2+b4 libxfixes3_1:6.0.0-2+b4 libxi-dev_2:1.8.2-1 libxi6_2:1.8.2-1 libxml2-16_2.15.1+dfsg-2 libxml2-utils_2.15.1+dfsg-2 libxmu-dev_2:1.1.3-3+b4 libxmu-headers_2:1.1.3-3 libxmu6_2:1.1.3-3+b4 libxshmfence1_1.3.3-1 libxslt1.1_1.1.43-0.3 libxt-dev_1:1.2.1-1.3 libxt6t64_1:1.2.1-1.3 libxxf86vm1_1:1.1.4-2 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd1_1.5.7+dfsg-2 linux-libc-dev_6.17.9-1 linux-libc-dev-s390x-cross_6.12.38-1cross1 login_1:4.16.0-2+really2.41.2-4 login.defs_1:4.18.0-2 m4_1.4.20-2 make_4.4.1-3 man-db_2.13.1-1 mawk_1.3.4.20250131-1 media-types_14.0.0 mesa-libgallium_25.2.7-1 mount_2.41.2-4 ncurses-base_6.5+20251123-1 ncurses-bin_6.5+20251123-1 netbase_6.5 openssl-provider-legacy_3.5.4-1 passwd_1:4.18.0-2 patch_2.8-2 perl_5.40.1-7 perl-base_5.40.1-7 perl-modules-5.40_5.40.1-7 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 python3_3.13.7-1 python3-minimal_3.13.7-1 python3.13_3.13.9-1 python3.13-minimal_3.13.9-1 readline-common_8.3-3 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sgml-base_1.31+nmu1 sgml-data_2.0.11+nmu1 sqv_1.3.0-3 sysvinit-utils_3.15-6 tao-pegtl-dev_3.2.7-1 tar_1.35+dfsg-3.1 tzdata_2025b-5 util-linux_2.41.2-4 uuid-dev_2.41.2-4 x11-common_1:7.7+26 x11proto-dev_2024.1-1 xml-core_0.19 xorg-sgml-doctools_1:1.11-1.1 xsltproc_1.1.43-0.3 xtrans-dev_1.6.0-1 xz-utils_5.8.1-2 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA512

Format: 3.0 (quilt)
Source: macromoleculebuilder
Binary: libmmb-dev, libmmb4.1, mmb, mmb-common
Architecture: any all
Version: 4.2+dfsg-1
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Uploaders:  Andrius Merkys <merkys@debian.org>,
Homepage: https://simtk.org/projects/rnatoolbox
Standards-Version: 4.6.2
Vcs-Browser: https://salsa.debian.org/debichem-team/macromoleculebuilder
Vcs-Git: https://salsa.debian.org/debichem-team/macromoleculebuilder.git
Build-Depends: architecture-is-64-bit, asciidoc-base, cmake, debhelper-compat (= 13), docbook-xml, dpkg-dev (>= 1.22.5), gemmi-dev (>= 0.6.2+ds-2), libopenmm-dev, libseqan2-dev, libsimbody-dev, libsimtkmolmodel-dev (>= 3.1.0), libsimtkmolmodel-plugins, libstb-dev, tao-pegtl-dev, zlib1g-dev
Package-List:
 libmmb-dev deb libdevel optional arch=any
 libmmb4.1 deb libs optional arch=any
 mmb deb science optional arch=any
 mmb-common deb science optional arch=all
Checksums-Sha1:
 b4d715369a6ec4c6833c2513515476865c740904 2079836 macromoleculebuilder_4.2+dfsg.orig.tar.xz
 eb5d3d223a152327de27e38a6642dc97560cd052 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
Checksums-Sha256:
 a75b89bc007787866865a80f5126eab748708e62e6a130cd8a58a1e1191b54fc 2079836 macromoleculebuilder_4.2+dfsg.orig.tar.xz
 8c5a9cfe46a2a28ee1b42c003e97109702151a44ffead53d94c997c08f59ae90 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
Files:
 1d0a787370d5019e165d655ef5a6cee0 2079836 macromoleculebuilder_4.2+dfsg.orig.tar.xz
 74036500443b8e1c4c559ecef674c235 5324 macromoleculebuilder_4.2+dfsg-1.debian.tar.xz

-----BEGIN PGP SIGNATURE-----
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=EaQL
-----END PGP SIGNATURE-----

dpkg-source: warning: cannot verify inline signature for ./macromoleculebuilder_4.2+dfsg-1.dsc: no acceptable signature found
dpkg-source: info: extracting macromoleculebuilder in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking macromoleculebuilder_4.2+dfsg.orig.tar.xz
dpkg-source: info: unpacking macromoleculebuilder_4.2+dfsg-1.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying drop-CMAKE_CXX_STANDARD.patch
dpkg-source: info: applying ignore-gemmi-check.patch
dpkg-source: info: applying fix-gemmi-incompatibility.patch

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=crossqa
OLDPWD=/home/crossqa
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SBUILD_CONFIG=/tmp/tmp.KdXCBCmmw5/sbuild.conf
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=sid-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1000
SCHROOT_GROUP=crossqa
SCHROOT_SESSION_ID=sid-amd64-sbuild-65c5f378-be3f-4139-b075-4921590aad38
SCHROOT_UID=1000
SCHROOT_USER=crossqa
SHELL=/bin/sh
USER=crossqa
XDG_SESSION_CLASS=user

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage --sanitize-env -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package macromoleculebuilder
dpkg-buildpackage: info: source version 4.2+dfsg-1
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Andrius Merkys <merkys@debian.org>
dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture s390x
 debian/rules clean
dh clean
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_configure
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_auto_configure -- \
	-DCMAKE_BUILD_TYPE=Release \
	-DENABLE_LEPTON=OFF \
	-DGEMMI_DIR=/usr \
	-DOpenMM_INCLUDE_DIR=/usr/include \
	-DSimTKmolmodel=/usr \
	-DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0"
	cd obj-s390x-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/s390x-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=s390x -DCMAKE_C_COMPILER=s390x-linux-gnu-gcc -DCMAKE_CXX_COMPILER=s390x-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/s390x-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/s390x-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/s390x-linux-gnu -DBUILD_TESTING:BOOL=OFF -DCMAKE_BUILD_TYPE=Release -DENABLE_LEPTON=OFF -DGEMMI_DIR=/usr -DOpenMM_INCLUDE_DIR=/usr/include -DSimTKmolmodel=/usr -DCMAKE_CXX_FLAGS="-D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0" ..
-- The CXX compiler identification is GNU 15.2.0
-- Detecting CXX compiler ABI info
-- Detecting CXX compiler ABI info - done
-- Check for working CXX compiler: /usr/bin/s390x-linux-gnu-g++ - skipped
-- Detecting CXX compile features
-- Detecting CXX compile features - done
-- Found OpenMM: /usr/include
-- Found ZLIB: /usr/lib/s390x-linux-gnu/libz.so (found version "1.3.1")
-- Found gemmi version 0.7.1
-- Looking for copy_file_range
-- Looking for copy_file_range - found
-- Looking for sendfile
-- Looking for sendfile - found
-- Configuring done (0.4s)
-- Generating done (0.0s)
CMake Warning:
  Manually-specified variables were not used by the project:

    BUILD_TESTING
    CMAKE_C_COMPILER
    CMAKE_EXPORT_NO_PACKAGE_REGISTRY
    CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY
    FETCHCONTENT_FULLY_DISCONNECTED
    PKGCONFIG_EXECUTABLE
    PKG_CONFIG_EXECUTABLE
    QMAKE_EXECUTABLE
    SimTKmolmodel


-- Build files have been written to: /<<PKGBUILDDIR>>/obj-s390x-linux-gnu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_auto_build -a
	cd obj-s390x-linux-gnu && make -j1 INSTALL="install --strip-program=true" VERBOSE=1
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/CMakeFiles /<<PKGBUILDDIR>>/obj-s390x-linux-gnu//CMakeFiles/progress.marks
make  -f CMakeFiles/Makefile2 all
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/CMakeFiles/MMB.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f CMakeFiles/MMB.dir/build.make CMakeFiles/MMB.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[  3%] Building CXX object CMakeFiles/MMB.dir/src/Utils.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Utils.cpp.o -MF CMakeFiles/MMB.dir/src/Utils.cpp.o.d -o CMakeFiles/MMB.dir/src/Utils.cpp.o -c /<<PKGBUILDDIR>>/src/Utils.cpp
In file included from /<<PKGBUILDDIR>>/src/Utils.cpp:12:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
[  6%] Building CXX object CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -MF CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o.d -o CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o -c /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:14:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘void BiopolymerClass::renumberPdbResidues(ResidueID)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:551:9: warning: unused variable ‘myNewResidueNumberWithoutInsertionCode’ [-Wunused-variable]
  551 |     int myNewResidueNumberWithoutInsertionCode = firstResidueID.getResidueNumber() ;
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::matchCoordinates(const SimTK::PdbStructure&, bool, bool, bool, bool, bool, bool, double, double)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:669:45: warning: variable ‘biopolymerAtomTargetsIterator’ set but not used [-Wunused-but-set-variable]
  669 |     Compound::AtomTargetLocations::iterator biopolymerAtomTargetsIterator = biopolymerAtomTargets.begin();
      |                                             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘ResidueID BiopolymerClass::sum(ResidueID, int) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2172:55: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
 2172 |         if ((newResidueIndex < 0) || (newResidueIndex >= residueIDVector.size())) {
      |                                       ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:16:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4680:61:   required from here
 4680 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:283:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  283 |             for (int i = 0; i < chainAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:300:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  300 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2584:54:   required from ‘void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = MobilizerStretch]’
 2584 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:2588:181:   required from here
 2588 | template void BiopolymerClass::selectivelyRemoveResidueStretchFromContainer(const ResidueStretch &residueStretch, ResidueStretchContainer<MobilizerStretch> &residueStretchContainer);
      |                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MobilizerStretch>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:320:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addIntraChainInterfaceResidues(double, SimTK::String, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  320 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addResidueStretchToVector(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4680:61:   required from here
 4680 |     myResidueStretchContainer.addIntraChainInterfaceResidues( radius, chain, *this );
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4825:54:   required from ‘void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer&, ResidueStretchContainer<ResidueStretchType>&) [with ResidueStretchType = DensityStretch]’
 4825 |     residueStretchContainer.printResidueStretchVector();
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:4828:213:   required from here
 4828 | template void BiopolymerClassContainer::selectivelyRemoveRigidMobilizerStretchesFromResidueStretchContainer(MobilizerContainer &mobilizerContainer, ResidueStretchContainer<DensityStretch> &residueStretchContainer);
      |                                                                                                                                                                                                                     ^
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /usr/include/molmodel/molmodel/internal/Compound.h:36,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:16:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’ at /<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:876:44:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp: In member function ‘int BiopolymerClass::initializeBiopolymer(SimTK::CompoundSystem&, bool, bool, bool, bool, bool, bool, bool, int, double, const std::vector<Displacement>&, double, double, const std::vector<SecondaryStructureStretch>&, PdbStructureMapType&)’:
/<<PKGBUILDDIR>>/src/BiopolymerClass.cpp:875:14: note: object ‘myRotation’ of size 72
  875 |     Rotation myRotation;
      |              ^~~~~~~~~~
[  9%] Building CXX object CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -MF CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o.d -o CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o -c /<<PKGBUILDDIR>>/src/UnitCellParameters.cpp
[ 12%] Building CXX object CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -MF CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o -c /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:12:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘double AtomSpringContainer::calcRmsd(SimTK::State&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:65:12: warning: unused variable ‘myExtension’ [-Wunused-variable]
   65 |     double myExtension = 0.0;
      |            ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteAtomSpring(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:194:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  194 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateAtomSpring(int, const AtomSpring&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:201:21: warning: comparison of integer expressions of different signedness: ‘const int’ and ‘std::vector<AtomSpring>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  201 |     if(id < 0 || id >= atomSpringVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:260:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  260 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:268:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  268 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateThreading(int, SimTK::String, ResidueID, ResidueID, SimTK::String, ResidueID, ResidueID, double, bool, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:279:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  279 |     if(id < 0 || id >= threadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::deleteGappedThreading(int)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:446:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  446 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, const ThreadingStruct&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:454:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  454 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::updateGappedThreading(int, SimTK::String, SimTK::String, double, bool, BiopolymerClassContainer&, double, SimTK::String)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:463:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  463 |     if(id < 0 || id >= gappedThreadingStructVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp: In member function ‘void AtomSpringContainer::createSpringsFromGappedThreading(BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:493:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size<seqan::String<char, seqan::Alloc<> > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare]
  493 |         while ((aIndex < length(thread.updThreadingPartner(0).sequence)) &&
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/AtomSpringContainer.cpp:494:24: warning: comparison of integer expressions of different signedness: ‘int’ and ‘seqan::Size<seqan::String<char, seqan::Alloc<> > >::Type’ {aka ‘long unsigned int’} [-Wsign-compare]
  494 |                (bIndex < length(thread.updThreadingPartner(1).sequence)))
      |                 ~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
In file included from /usr/include/molmodel/molmodel/internal/Compound.h:41,
                 from /usr/include/molmodel/SimTKmolmodel.h:53,
                 from /<<PKGBUILDDIR>>/include/Utils.h:24:
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:107:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:107:18: note: object ‘R’ of size 72
  107 |         Mat<3,3> R(0.0);
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:183:23:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Mat<3, 3> [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:183:18: note: object ‘U’ of size 72
  183 |         Mat<3,3> U(0.0);   // initialize 2-d array
      |                  ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’ at /usr/include/molmodel/molmodel/internal/Superpose.h:201:33:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/usr/include/molmodel/molmodel/internal/Superpose.h: In static member function ‘static SimTK::TransformAndResidual SimTK::Kabsch78::superpose(const VectorSet&)’:
/usr/include/molmodel/molmodel/internal/Superpose.h:201:33: note: object ‘<anonymous>’ of size 72
  201 |             rotation = Rotation();
      |                                 ^
[ 15%] Building CXX object CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/include/DisplacementContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DisplacementContainer.cpp:12:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 18%] Building CXX object CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp
In file included from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:12:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp: In member function ‘void MobilizerContainer::addMobilizerDomainsInterfacesToVector(const std::vector<MobilizerDomainsInterface>&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/MobilizerContainer.cpp:190:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  190 |             if( (dist <= it->range) &&
      |                 ~~~~~~~~~~~~~~~~~~~~^~
  191 |                 (it->domain1.contains(chain1, res1) && it->domain2.contains(chain2, res2)) ||
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 21%] Building CXX object CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -MF CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o -c /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/ConstraintContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/MoleculeContainer.h:8,
                 from /<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:3:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp: In constructor ‘CustomMolecule::CustomMolecule(std::vector<std::vector<SimTK::String> >, SimTK::DuMMForceFieldSubsystem&)’:
/<<PKGBUILDDIR>>/src/MoleculeContainer.cpp:324:15: warning: unused variable ‘myAngle1’ [-Wunused-variable]
  324 |         Angle myAngle1 = 180*Deg2Rad; // this is a bond angle
      |               ^~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 25%] Building CXX object CMakeFiles/MMB.dir/src/DensityContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -MF CMakeFiles/MMB.dir/src/DensityContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityContainer.cpp.o -c /<<PKGBUILDDIR>>/src/DensityContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:4,
                 from /<<PKGBUILDDIR>>/include/DensityContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/DensityContainer.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityContainer.cpp: In member function ‘void DensityContainer::updateDensityStretch(int, const DensityStretch&, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/DensityContainer.cpp:18:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   18 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 28%] Building CXX object CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o -MF CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o -c /<<PKGBUILDDIR>>/src/BasePairContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/include/BasePairContainer.h:17,
                 from /<<PKGBUILDDIR>>/src/BasePairContainer.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BasePairContainer.cpp: In member function ‘void BasePairContainer::updateBasePair(int, SimTK::String, int, SimTK::String, SimTK::String, int, SimTK::String, SimTK::String, BiopolymerClassContainer&, const LeontisWesthofClass&, bool)’:
/<<PKGBUILDDIR>>/src/BasePairContainer.cpp:44:28: warning: ignoring return value of ‘std::vector<_Tp, _Alloc>::reference std::vector<_Tp, _Alloc>::at(size_type) [with _Tp = BaseInteraction; _Alloc = std::allocator<BaseInteraction>; reference = BaseInteraction&; size_type = long unsigned int]’, declared with attribute ‘nodiscard’ [-Wunused-result]
   44 |         myBasePairVector.at(index);
      |         ~~~~~~~~~~~~~~~~~~~^~~~~~~
In file included from /usr/s390x-linux-gnu/include/c++/15/vector:68,
                 from /usr/include/simbody/SimTKcommon/internal/Array.h:39,
                 from /usr/include/simbody/SimTKcommon/basics.h:53,
                 from /usr/include/simbody/SimTKcommon.h:32,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/BasePairContainer.h:16:
/usr/s390x-linux-gnu/include/c++/15/bits/stl_vector.h:1313:7: note: declared here
 1313 |       at(size_type __n)
      |       ^~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 31%] Building CXX object CMakeFiles/MMB.dir/src/ContactContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ContactContainer.cpp.o -MF CMakeFiles/MMB.dir/src/ContactContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/ContactContainer.cpp.o -c /<<PKGBUILDDIR>>/src/ContactContainer.cpp
In file included from /<<PKGBUILDDIR>>/src/ContactContainer.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/ContactContainer.cpp:12:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::validateContact(ContactStretch, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:26:10: warning: variable ‘myEndCapsOn’ set but not used [-Wunused-but-set-variable]
   26 |     bool myEndCapsOn;
      |          ^~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::deleteContactWithin(int)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:70:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   70 |     if(id < 0 || id >= contactWithinVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::updateContactWithin(int, SimTK::String, int, double, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:77:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   77 |     if(id < 0 || id >= contactWithinVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::deleteContact(int)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:275:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactStretch, std::allocator<ContactStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  275 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘void ContactContainer::updateContact(int, std::string, int, int, std::string, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:283:21: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ContactStretch, std::allocator<ContactStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  283 |     if(id < 0 || id >= residueStretchVector.size()){
      |                  ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ContactContainer.cpp: In member function ‘bool ContactContainer::hasSharedContact(SimTK::String, ResidueID, ResidueID, SimTK::String)’:
/<<PKGBUILDDIR>>/src/ContactContainer.cpp:313:71: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  313 |             ((tempContactStretch.getStartResidue() <= endResidueID)   && (tempContactStretch.getEndResidue() >= endResidueID) ||   // the supplied end residue is in the range of this ContactStretch (with index $i).
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 34%] Building CXX object CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o -MF CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o -c /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/ConstraintContainer.h:14,
                 from /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:10:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:11:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp: In member function ‘void ConstraintToGroundContainer::updateConstraintToVector(int, SimTK::String, ResidueID, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:129:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ConstraintClass>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  129 |     if(index < 0 || index >= constraintClassVector.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp: In member function ‘void ConstraintToGroundContainer::updateConstraintToVector(int, SimTK::String, ResidueID, SimTK::String, SimTK::String, ResidueID, SimTK::String, BiopolymerClassContainer&)’:
/<<PKGBUILDDIR>>/src/ConstraintContainer.cpp:146:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ConstraintClass>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  146 |     if(index < 0 || index >= constraintClassVector.size())
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 37%] Building CXX object CMakeFiles/MMB.dir/src/Repel.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Repel.cpp.o -MF CMakeFiles/MMB.dir/src/Repel.cpp.o.d -o CMakeFiles/MMB.dir/src/Repel.cpp.o -c /<<PKGBUILDDIR>>/src/Repel.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicScrubber.h:16,
                 from /<<PKGBUILDDIR>>/include/Repel.h:24,
                 from /<<PKGBUILDDIR>>/src/Repel.cpp:12:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::constraintsAndRestraints(ParameterReader&, BiopolymerClassContainer&, SimTK::GeneralForceSubsystem&, SimTK::SimbodyMatterSubsystem&, SimTK::State&, SimTK::CompoundSystem&)’:
/<<PKGBUILDDIR>>/src/Repel.cpp:172:31: warning: variable ‘myResidueID’ set but not used [-Wunused-but-set-variable]
  172 |                     ResidueID myResidueID = myConstraintClass.getResidueID1();
      |                               ^~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Repel.h: In constructor ‘ConstrainedDynamics::ConstrainedDynamics(ParameterReader*)’:
/<<PKGBUILDDIR>>/include/Repel.h:269:29: warning: ‘ConstrainedDynamics::_parameterReader’ will be initialized after [-Wreorder]
  269 |     ParameterReader *       _parameterReader;
      |                             ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Repel.h:259:29: warning:   ‘SimTK::SimbodyMatterSubsystem ConstrainedDynamics::_matter’ [-Wreorder]
  259 |     SimbodyMatterSubsystem  _matter;
      |                             ^~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:342:1: warning:   when initialized here [-Wreorder]
  342 | ConstrainedDynamics::ConstrainedDynamics(ParameterReader * myParameterReader) : _parameterReader(myParameterReader),
      | ^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::initializeBiopolymer(SimTK::String, SimTK::String)’:
/<<PKGBUILDDIR>>/src/Repel.cpp:405:10: warning: variable ‘readFromFile’ set but not used [-Wunused-but-set-variable]
  405 |     bool readFromFile = false;
      |          ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: In member function ‘void ConstrainedDynamics::runAllSteps()’:
/<<PKGBUILDDIR>>/src/Repel.cpp:1040:22: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘int’ [-Wsign-compare]
 1040 |     for(; _nextFrame <= _parameterReader->numReportingIntervals; _nextFrame++){
      |           ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:208:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  208 |                 for (int i = 0; i < interfaceContainer.numInterfaces(); i++) {
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:208:35: warning: comparison of integer expressions of different signedness: ‘int’ and ‘unsigned int’ [-Wsign-compare]
  208 |                 for (int i = 0; i < interfaceContainer.numInterfaces(); i++) {
      |                                 ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:232:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  232 |             for (int i = 0; i < concatenatedAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:244:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:232:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  232 |             for (int i = 0; i < concatenatedAtomInfoVector.size() ; i++) {
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:244:33: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<std::pair<unsigned int, unsigned int> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  244 |             for ( int j = 0 ; j < neighborList.size(); j++) {
      |                               ~~^~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = MobilizerStretch]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:264:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  264 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addStretch(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = MobilizerStretch]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:470:84:   required from here
  470 |     _parameterReader->mobilizerContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MobilizerStretch>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘bool ResidueStretchContainer<ResidueStretchType>::vectorHasResidueStretch(ResidueStretchType&) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:264:27:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addAllMutualChainResidues(double, std::vector<SimTK::String>, std::vector<SimTK::String>, BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  264 |                     if (!(vectorHasResidueStretch(myResidueStretch1))) {addStretch(myResidueStretch1);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:210:4:   required from ‘void ResidueStretchContainer<ResidueStretchType>::addStretchesToVectorFromInterfaceContainer(BiopolymerClassContainer&) [with ResidueStretchType = SingleResidue]’
  210 |                         addAllMutualChainResidues(tempInterface.Depth, tempInterface.Chains, tempInterface.PartnerChains, myBiopolymerClassContainer);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp:573:84:   required from here
  573 |     _parameterReader->  physicsContainer.addStretchesToVectorFromInterfaceContainer(_parameterReader->myBiopolymerClassContainer);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:104:36: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  104 |                 for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                                  ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Repel.cpp: At global scope:
/<<PKGBUILDDIR>>/src/Repel.cpp:97:17: warning: ‘bool compareUpper(const std::string&, const char*)’ defined but not used [-Wunused-function]
   97 |     static bool compareUpper( const string& param, const char* symbol ) {
      |                 ^~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 40%] Building CXX object CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o -MF CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o.d -o CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o -c /<<PKGBUILDDIR>>/src/MonoAtoms.cpp
In file included from /<<PKGBUILDDIR>>/src/MonoAtoms.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 43%] Building CXX object CMakeFiles/MMB.dir/src/Spiral.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/Spiral.cpp.o -MF CMakeFiles/MMB.dir/src/Spiral.cpp.o.d -o CMakeFiles/MMB.dir/src/Spiral.cpp.o -c /<<PKGBUILDDIR>>/src/Spiral.cpp
In file included from /<<PKGBUILDDIR>>/include/Spiral.h:16,
                 from /<<PKGBUILDDIR>>/src/Spiral.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::clear()’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:92:12: warning: unused variable ‘helixAdvancePerBasePair’ [-Wunused-variable]
   92 |     double helixAdvancePerBasePair = -11111. ;  // in nm // should be user specified.
      |            ^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘double Spiral::harmonicThetaAdjustment(double)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:124:22: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<frequencyPhaseAmplitude>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  124 |     for (int i =0; i < frequencyPhaseAmplitudeVector.size(); i++){
      |                    ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::writeCylindricalSpiralCommandFile(MonoAtomsContainer&)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:140:10: warning: variable ‘deltaZ’ set but not used [-Wunused-but-set-variable]
  140 |     Vec3 deltaZ = Vec3(0,0,1) * sin(cylindricalSpiralSlopeAngle(pitch,radius))*helixAdvancePerBasePair ;
      |          ^~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp: In member function ‘void Spiral::writeSphericalSpiralCommandFile(MonoAtomsContainer&)’:
/<<PKGBUILDDIR>>/src/Spiral.cpp:238:16: warning: unused variable ‘currentPhi’ [-Wunused-variable]
  238 |         double currentPhi = priorPhi + deltaPhi ; // phiFromTheta(currentTheta, pitch, radius, phiOffset);
      |                ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/Spiral.cpp:221:12: warning: unused variable ‘phiOffsetFromStartingTheta’ [-Wunused-variable]
  221 |     double phiOffsetFromStartingTheta = phiFromTheta(startTheta, pitch, radius, 0.0, spiralIsRightHanded); // use offset = 0 to retreive the original, non-offset phi
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 46%] Building CXX object CMakeFiles/MMB.dir/src/ParameterReader.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ParameterReader.cpp.o -MF CMakeFiles/MMB.dir/src/ParameterReader.cpp.o.d -o CMakeFiles/MMB.dir/src/ParameterReader.cpp.o -c /<<PKGBUILDDIR>>/src/ParameterReader.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/src/ParameterReader.cpp:17:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::removeNonPriorityBasePairs(int)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:727:9: warning: unused variable ‘oldDutyCyclePriority’ [-Wunused-variable]
  727 |     int oldDutyCyclePriority=0;
      |         ^~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::updateAllResiduesWithin(int, SimTK::String, int, double)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:776:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AllResiduesWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  776 |     if(index < 0 || index >= includeAllResiduesWithinVector.size()){
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::deleteAllResiduesWithin(int)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:785:27: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<AllResiduesWithin>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  785 |     if(index < 0 || index >= includeAllResiduesWithinVector.size()){
      |                     ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:1578:17: warning: unused variable ‘myForceConstant’ [-Wunused-variable]
 1578 |          double myForceConstant = 1000000000.0; // set to super high value just to make sure it's being reset later.
      |                 ^~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2084:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2084 |             if ((parameterStringClass.getString(0).compare("constraint") == 0) || (parameterStringClass.getString(0).compare("restraint") == 0))
      |                ^
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2673:27: warning: variable ‘residueID1’ set but not used [-Wunused-but-set-variable]
 2673 |                 ResidueID residueID1 = ResidueID(-11111,'X');
      |                           ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2674:27: warning: variable ‘residueID2’ set but not used [-Wunused-but-set-variable]
 2674 |                 ResidueID residueID2 = ResidueID(-11111,'X');
      |                           ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2750:16: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2750 |             if ((parameterStringClass.getString(0).compare("constraint") == 0) || (parameterStringClass.getString(0).compare("restraint") == 0))
      |                ^
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = SingleResidue]’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:814:42:   required from here
  814 |     physicsContainer.deleteResidueStretch(index);
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<SingleResidue>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/SimTKsimbody.h:43,
                 from /<<PKGBUILDDIR>>/include/Utils.h:23:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:19:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2238:26: note: at offset 56 into object ‘myDisplacement’ of size 128
 2238 |             Displacement myDisplacement;
      |                          ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2240:52:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2239:22: note: object ‘myRotation’ of size 72
 2239 |             Rotation myRotation;
      |                      ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘Displacement::Displacement()’ at /<<PKGBUILDDIR>>/include/Utils.h:536:8,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘Displacement [1]’ [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2222:30: note: at offset 56 into object ‘myDisplacement’ of size 128
 2222 |                 Displacement myDisplacement;
      |                              ^~~~~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’ at /<<PKGBUILDDIR>>/src/ParameterReader.cpp:2225:56:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/ParameterReader.cpp: In member function ‘void ParameterReader::parameterStringInterpreter(const ParameterStringClass&, int, bool, bool, bool)’:
/<<PKGBUILDDIR>>/src/ParameterReader.cpp:2224:26: note: object ‘myRotation’ of size 72
 2224 |                 Rotation myRotation;
      |                          ^~~~~~~~~~
[ 50%] Building CXX object CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o -MF CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o.d -o CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o -c /<<PKGBUILDDIR>>/src/BaseInteractionParameterReader.cpp
In file included from /<<PKGBUILDDIR>>/include/BaseInteractionParameterReader.h:22,
                 from /<<PKGBUILDDIR>>/src/BaseInteractionParameterReader.cpp:18:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 53%] Building CXX object CMakeFiles/MMB.dir/src/TetherForce.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/TetherForce.cpp.o -MF CMakeFiles/MMB.dir/src/TetherForce.cpp.o.d -o CMakeFiles/MMB.dir/src/TetherForce.cpp.o -c /<<PKGBUILDDIR>>/src/TetherForce.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/TetherForce.h:19,
                 from /<<PKGBUILDDIR>>/src/TetherForce.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 56%] Building CXX object CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o -MF CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o.d -o CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o -c /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClassTwoTransformForces.h:17,
                 from /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:10:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:279:16: warning: variable ‘dutyCycle’ set but not used [-Wunused-but-set-variable]
  279 |         double dutyCycle; //must be between 0 and 1.  at 1, force is applied all the time.  at 0, basically never applied.
      |                ^~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:280:16: warning: variable ‘scrubberPeriod’ set but not used [-Wunused-but-set-variable]
  280 |         double scrubberPeriod;
      |                ^~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
In file included from /usr/include/simbody/SimTKcommon/SmallMatrix.h:93,
                 from /usr/include/simbody/SimTKcommon/Simmatrix.h:37,
                 from /usr/include/simbody/SimTKcommon.h:35,
                 from /usr/include/simbody/Simbody.h:38,
                 from /usr/include/molmodel/SimTKmolmodel.h:47,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClassTwoTransformForces.h:16:
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:117:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual void AllTwoTransformLinearSprings::calcForce(const SimTK::State&, SimTK::Vector_<SimTK::Vec<2, SimTK::Vec<3> > >&, SimTK::Vector_<SimTK::Vec<3> >&, SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:116:22: note: object ‘rotation2’ of size 72
  116 |             Rotation rotation2;
      |                      ^~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:254:29: warning: ‘myFrcScalar’ may be used uninitialized [-Wmaybe-uninitialized]
  254 |                 myFrcScalar *= myParameterReader.twoTransformForceMultiplier;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:167:20: note: ‘myFrcScalar’ was declared here
  167 |             double myFrcScalar;
      |                    ^~~~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::operator=(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’ at /usr/include/simbody/SimTKcommon/internal/Vec.h:775:70,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(const E&) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:361:56,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>::Mat(int) [with int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:377:9,
    inlined from ‘SimTK::Rotation_<P>::Rotation_() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:137:23,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
In member function ‘SimTK::Vec<M, ELT, STRIDE>& SimTK::Vec<M, ELT, STRIDE>::scalarEq(const EE&) [with EE = double; int M = 3; ELT = double; int STRIDE = 4]’,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::scalarEq(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:882:24,
    inlined from ‘SimTK::Mat<M, N, ELT, CS, RS>& SimTK::Mat<M, N, ELT, CS, RS>::operator=(const EE&) [with EE = double; int M = 3; int N = 3; ELT = double; int CS = 3; int RS = 1]’ at /usr/include/simbody/SimTKcommon/internal/Mat.h:872:70,
    inlined from ‘SimTK::Rotation_<P>& SimTK::Rotation_<P>::setRotationToIdentityMatrix() [with P = double]’ at /usr/include/simbody/SimTKcommon/internal/Rotation.h:157:20,
    inlined from ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’ at /<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:320:50:
/usr/include/simbody/SimTKcommon/internal/Vec.h:784:42: warning: array subscript ‘SimTK::Vec<3, double, 4>[0]’ is partly outside array bounds of ‘SimTK::Rotation [1]’ {aka ‘SimTK::Rotation_<double> [1]’} [-Warray-bounds=]
  784 |       { for(int i=0;i<M;++i) d[i*STRIDE] = ee; return *this; }
      |                              ~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp: In member function ‘virtual SimTK::Real AllTwoTransformLinearSprings::calcPotentialEnergy(const SimTK::State&) const’:
/<<PKGBUILDDIR>>/src/BiopolymerClassTwoTransformForces.cpp:319:22: note: object ‘rotation2’ of size 72
  319 |             Rotation rotation2;
      |                      ^~~~~~~~~
[ 59%] Building CXX object CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o -MF CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o.d -o CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o -c /<<PKGBUILDDIR>>/src/WaterDroplet.cpp
In file included from /<<PKGBUILDDIR>>/include/WaterDroplet.h:16,
                 from /<<PKGBUILDDIR>>/src/WaterDroplet.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/WaterDroplet.h:17:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 62%] Building CXX object CMakeFiles/MMB.dir/src/DensityMap.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityMap.cpp.o -MF CMakeFiles/MMB.dir/src/DensityMap.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityMap.cpp.o -c /<<PKGBUILDDIR>>/src/DensityMap.cpp
In file included from /<<PKGBUILDDIR>>/src/DensityMap.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::resizeVectorOfAmplitudeAndRandomPhases()’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:177:62: warning: comparison of integer expressions of different signedness: ‘std::vector<std::vector<std::vector<AmplitudeFrequencyAndRandomPhases> > >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  177 |         if (vectorOfAmplitudeFrequencyAndRandomPhases.size() != (unitCellParameters.calcMaxFrequencyDoublingsZ()+1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:181:78: warning: comparison of integer expressions of different signedness: ‘std::vector<std::vector<AmplitudeFrequencyAndRandomPhases> >::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  181 |                 if (vectorOfAmplitudeFrequencyAndRandomPhases[zIndex].size() != (unitCellParameters.calcMaxFrequencyDoublingsY()+1) ) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:185:90: warning: comparison of integer expressions of different signedness: ‘std::vector<AmplitudeFrequencyAndRandomPhases>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  185 |                     if (vectorOfAmplitudeFrequencyAndRandomPhases[zIndex][yIndex].size() != (unitCellParameters.calcMaxFrequencyDoublingsX()+1 )) {
      |                         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::densityAutocorrelation(bool, bool) const’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:209:12: warning: unused variable ‘ySquared’ [-Wunused-variable]
  209 |     double ySquared = 0.;
      |            ^~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:210:12: warning: unused variable ‘zSquared’ [-Wunused-variable]
  210 |     double zSquared = 0.;
      |            ^~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::populateNoiseMap()’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:307:12: warning: unused variable ‘groundFrequencyX’ [-Wunused-variable]
  307 |     double groundFrequencyX = 1/unitCellParameters.getNa()/unitCellParameters.geta()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:308:12: warning: unused variable ‘groundFrequencyY’ [-Wunused-variable]
  308 |     double groundFrequencyY = 1/unitCellParameters.getNb()/unitCellParameters.getb()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:309:12: warning: unused variable ‘groundFrequencyZ’ [-Wunused-variable]
  309 |     double groundFrequencyZ = 1/unitCellParameters.getNc()/unitCellParameters.getc()/2;
      |            ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:311:12: warning: unused variable ‘maxFrequencyX’ [-Wunused-variable]
  311 |     double maxFrequencyX = 1/unitCellParameters.geta()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:312:12: warning: unused variable ‘maxFrequencyY’ [-Wunused-variable]
  312 |     double maxFrequencyY = 1/unitCellParameters.getb()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:313:12: warning: unused variable ‘maxFrequencyZ’ [-Wunused-variable]
  313 |     double maxFrequencyZ = 1/unitCellParameters.getc()/2;
      |            ^~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:318:12: warning: variable ‘signalToNoiseRatio’ set but not used [-Wunused-but-set-variable]
  318 |     double signalToNoiseRatio = 0.;
      |            ^~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp:319:12: warning: unused variable ‘inverseNoiseTemperatureToPower4’ [-Wunused-variable]
  319 |     double inverseNoiseTemperatureToPower4 = 1/pow(noiseTemperature,4); //Stefan–Boltzmann law says total radiance goes like T^4. So we normalize by this number to keep noise sort of constant with temperatuere. Of course our oven has a maximum wavenumber, so this won't be perfect.
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/DensityMap.cpp: In member function ‘void DensityMap::writeDensityMapXplor(SimTK::String, bool, bool)’:
/<<PKGBUILDDIR>>/src/DensityMap.cpp:689:13: warning: unused variable ‘densitiesPerLine’ [-Wunused-variable]
  689 |         int densitiesPerLine = 6;
      |             ^~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 65%] Building CXX object CMakeFiles/MMB.dir/src/DensityForce.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/DensityForce.cpp.o -MF CMakeFiles/MMB.dir/src/DensityForce.cpp.o.d -o CMakeFiles/MMB.dir/src/DensityForce.cpp.o -c /<<PKGBUILDDIR>>/src/DensityForce.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/DensityForce.h:20,
                 from /<<PKGBUILDDIR>>/src/DensityForce.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 68%] Building CXX object CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o -MF CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o.d -o CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o -c /<<PKGBUILDDIR>>/src/ElectrostaticPotentialGridForce.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/ElectrostaticPotentialGridForce.h:19,
                 from /<<PKGBUILDDIR>>/src/ElectrostaticPotentialGridForce.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 71%] Building CXX object CMakeFiles/MMB.dir/src/MMBLogger.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/MMBLogger.cpp.o -MF CMakeFiles/MMB.dir/src/MMBLogger.cpp.o.d -o CMakeFiles/MMB.dir/src/MMBLogger.cpp.o -c /<<PKGBUILDDIR>>/src/MMBLogger.cpp
[ 75%] Building CXX object CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o -MF CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o.d -o CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o -c /<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicPdbAndEnergyWriter.h:13,
                 from /<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:18:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp: In member function ‘virtual void SimTK::PeriodicPdbAndEnergyWriter::handleEvent(SimTK::State&, SimTK::Real, bool&) const’:
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:201:30: warning: comparison of integer expressions of different signedness: ‘std::vector<double>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  201 |         if(myEnergies.size() > myParameterReader.convergenceTimeout) {
      |            ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:202:20: warning: unused variable ‘lastEnergy’ [-Wunused-variable]
  202 |             double lastEnergy = myEnergies.back();
      |                    ^~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:49:9: warning: unused variable ‘compoundNumber’ [-Wunused-variable]
   49 |     int compoundNumber                                = 1;
      |         ^~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/src/PeriodicPdbAndEnergyWriter.cpp:50:9: warning: unused variable ‘requiredPrecision’ [-Wunused-variable]
   50 |     int requiredPrecision                             = 12;
      |         ^~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 78%] Building CXX object CMakeFiles/MMB.dir/src/CifOutput.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/CifOutput.cpp.o -MF CMakeFiles/MMB.dir/src/CifOutput.cpp.o.d -o CMakeFiles/MMB.dir/src/CifOutput.cpp.o -c /<<PKGBUILDDIR>>/src/CifOutput.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/include/CifOutput.h:5,
                 from /<<PKGBUILDDIR>>/src/CifOutput.cpp:1:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/PeriodicPdbAndEnergyWriter.h:13,
                 from /<<PKGBUILDDIR>>/include/CifOutput.h:12:
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 81%] Building CXX object CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o -MF CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o.d -o CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o -c /<<PKGBUILDDIR>>/src/ProgressWriter.cpp
[ 84%] Building CXX object CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o -MF CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o.d -o CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o -c /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp
In file included from /<<PKGBUILDDIR>>/include/NtC_Class_Container.h:14,
                 from /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp:16:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/NTC_FORCE_CLASS.h:4,
                 from /<<PKGBUILDDIR>>/src/NTC_PARAMETER_READER.cpp:17:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 87%] Building CXX object CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o -MF CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o.d -o CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o -c /<<PKGBUILDDIR>>/src/NtCClassContainer.cpp
In file included from /<<PKGBUILDDIR>>/include/Mutation.h:4,
                 from /<<PKGBUILDDIR>>/include/BiopolymerClass.h:20,
                 from /<<PKGBUILDDIR>>/src/NtCClassContainer.cpp:13:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 90%] Building CXX object CMakeFiles/MMB.dir/src/NtCForces.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DMMB_BUILDING_SHARED_LIBRARY -DMMB_EXPORTS -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -fPIC -MD -MT CMakeFiles/MMB.dir/src/NtCForces.cpp.o -MF CMakeFiles/MMB.dir/src/NtCForces.cpp.o.d -o CMakeFiles/MMB.dir/src/NtCForces.cpp.o -c /<<PKGBUILDDIR>>/src/NtCForces.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/include/NtCForces.h:13,
                 from /<<PKGBUILDDIR>>/src/NtCForces.cpp:11:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[ 93%] Linking CXX shared library libMMB.so
/usr/bin/cmake -E cmake_link_script CMakeFiles/MMB.dir/link.txt --verbose=1
/usr/bin/s390x-linux-gnu-g++ -fPIC -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -Wl,--dependency-file=CMakeFiles/MMB.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libMMB.so.4.1 -o libMMB.so.4.1 CMakeFiles/MMB.dir/src/Utils.cpp.o CMakeFiles/MMB.dir/src/BiopolymerClass.cpp.o CMakeFiles/MMB.dir/src/UnitCellParameters.cpp.o CMakeFiles/MMB.dir/src/AtomSpringContainer.cpp.o CMakeFiles/MMB.dir/src/DisplacementContainer.cpp.o CMakeFiles/MMB.dir/src/MobilizerContainer.cpp.o CMakeFiles/MMB.dir/src/MoleculeContainer.cpp.o CMakeFiles/MMB.dir/src/DensityContainer.cpp.o CMakeFiles/MMB.dir/src/BasePairContainer.cpp.o CMakeFiles/MMB.dir/src/ContactContainer.cpp.o CMakeFiles/MMB.dir/src/ConstraintContainer.cpp.o CMakeFiles/MMB.dir/src/Repel.cpp.o CMakeFiles/MMB.dir/src/MonoAtoms.cpp.o CMakeFiles/MMB.dir/src/Spiral.cpp.o CMakeFiles/MMB.dir/src/ParameterReader.cpp.o CMakeFiles/MMB.dir/src/BaseInteractionParameterReader.cpp.o CMakeFiles/MMB.dir/src/TetherForce.cpp.o CMakeFiles/MMB.dir/src/BiopolymerClassTwoTransformForces.cpp.o CMakeFiles/MMB.dir/src/WaterDroplet.cpp.o CMakeFiles/MMB.dir/src/DensityMap.cpp.o CMakeFiles/MMB.dir/src/DensityForce.cpp.o CMakeFiles/MMB.dir/src/ElectrostaticPotentialGridForce.cpp.o CMakeFiles/MMB.dir/src/MMBLogger.cpp.o CMakeFiles/MMB.dir/src/PeriodicPdbAndEnergyWriter.cpp.o CMakeFiles/MMB.dir/src/CifOutput.cpp.o CMakeFiles/MMB.dir/src/ProgressWriter.cpp.o CMakeFiles/MMB.dir/src/NTC_PARAMETER_READER.cpp.o CMakeFiles/MMB.dir/src/NtCClassContainer.cpp.o CMakeFiles/MMB.dir/src/NtCForces.cpp.o   -L/<<PKGBUILDDIR>>/SYSTEM  -Wl,-rpath,/<<PKGBUILDDIR>>/SYSTEM: /usr/lib/s390x-linux-gnu/libSimTKmolmodel.so.3.1 /usr/lib/s390x-linux-gnu/libOpenMM.so /usr/lib/s390x-linux-gnu/libz.so -lgemmi_cpp /usr/lib/s390x-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/s390x-linux-gnu/libSimTKmath.so.3.7 /usr/lib/s390x-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/s390x-linux-gnu/libblas.so /usr/lib/s390x-linux-gnu/liblapack.so /usr/lib/s390x-linux-gnu/libblas.so /usr/lib/s390x-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm
/usr/bin/cmake -E cmake_symlink_library libMMB.so.4.1 libMMB.so.4.1 libMMB.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 93%] Built target MMB
make  -f CMakeFiles/MMB_EXEC.dir/build.make CMakeFiles/MMB_EXEC.dir/depend
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
cd /<<PKGBUILDDIR>>/obj-s390x-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<<PKGBUILDDIR>> /<<PKGBUILDDIR>> /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/CMakeFiles/MMB_EXEC.dir/DependInfo.cmake "--color="
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make  -f CMakeFiles/MMB_EXEC.dir/build.make CMakeFiles/MMB_EXEC.dir/build
make[3]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[ 96%] Building CXX object CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o
/usr/bin/s390x-linux-gnu-g++ -DHAVE_COPY_FILE_RANGE -DHAVE_SENDFILE -DUSE_MMB_CONSTEXPR -I/<<PKGBUILDDIR>>/obj-s390x-linux-gnu -I/<<PKGBUILDDIR>> -I/<<PKGBUILDDIR>>/include -isystem /usr/include/simbody -isystem /usr/include/molmodel -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -MD -MT CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -MF CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o.d -o CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -c /<<PKGBUILDDIR>>/src/RNABuilder.cpp
In file included from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:14,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:20,
                 from /<<PKGBUILDDIR>>/src/RNABuilder.cpp:22:
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘virtual SimTK::Real ConstraintFunction::calcDerivative(const SimTK::Array_<int>&, const SimTK::Vector&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:282:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  282 |          if (derivComponents.size() == 1)
      |          ^~
/<<PKGBUILDDIR>>/include/Utils.h:284:14: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  284 |              return 0;
      |              ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: In member function ‘const SimTK::String ResidueID::chainIDResidueID(const SimTK::String&) const’:
/<<PKGBUILDDIR>>/include/Utils.h:378:45: warning: comparison of integer expressions of different signedness: ‘std::__cxx11::basic_string<char>::size_type’ {aka ‘long unsigned int’} and ‘int’ [-Wsign-compare]
  378 |         if ((myStringStream.str()).length() != (totalWidth - 1)) {
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/Threading.h:2,
                 from /<<PKGBUILDDIR>>/include/AtomSpringContainer.h:15:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h: In member function ‘void BiopolymerClass::printAtomInfoVector()’:
/<<PKGBUILDDIR>>/include/BiopolymerClass.h:255:51: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<MMBAtomInfo>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  255 |     void printAtomInfoVector(){for (int i = 0 ; i < atomInfoVector.size(); i++) atomInfoVector[i].print(); };
      |                                                 ~~^~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘bool ThreadingStruct::hasResidue(ResidueID, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:95:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   95 |             for (int i = 0; i < threadingPartners[biopolymerIndex].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Threading.h: In member function ‘void ThreadingStruct::supplementIncludedResidues(int, int)’:
/<<PKGBUILDDIR>>/include/Threading.h:102:31: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ResidueID>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  102 |             for (int i = 0; i < threadingPartners[fromBiopolymer].includedResidues.size() ;  i++){
      |                             ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h: In member function ‘void AtomSpringContainer::printAllAlignmentStats()’:
/<<PKGBUILDDIR>>/include/AtomSpringContainer.h:76:57: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<ThreadingStruct>::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   76 |         void printAllAlignmentStats(){for (int i = 0; i < threadingStructVector.size(); i++){threadingStructVector[i].printAlignmentStats();}}
      |                                                       ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /<<PKGBUILDDIR>>/include/ContactContainer.h:15,
                 from /<<PKGBUILDDIR>>/include/ParameterReader.h:21:
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::printResidueStretchVector() [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:22:59:   required from here
   22 |     void printDensityStretches(){printResidueStretchVector();}; // just use printResidueStretchVector()
      |                                  ~~~~~~~~~~~~~~~~~~~~~~~~~^~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:61:28: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
   61 |         for (int i = 0 ; i <residueStretchVector.size(); i++) {
      |                          ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h: In instantiation of ‘void ResidueStretchContainer<ResidueStretchType>::deleteResidueStretch(int) [with ResidueStretchType = DensityStretch]’:
/<<PKGBUILDDIR>>/include/DensityContainer.h:25:59:   required from here
   25 |     void deleteDensityStretch(int id){deleteResidueStretch(id);}; // just use parent's deleteResidueStretch(int id)
      |                                       ~~~~~~~~~~~~~~~~~~~~^~~~
/<<PKGBUILDDIR>>/include/ResidueStretchContainer.h:144:26: warning: comparison of integer expressions of different signedness: ‘int’ and ‘std::vector<DensityStretch, std::allocator<DensityStretch> >::size_type’ {aka ‘long unsigned int’} [-Wsign-compare]
  144 |         if(id >= 0 && id < residueStretchVector.size())
      |                       ~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/<<PKGBUILDDIR>>/include/Utils.h: At global scope:
/<<PKGBUILDDIR>>/include/Utils.h:262:17: warning: ‘{anonymous}::digits’ defined but not used [-Wunused-variable]
  262 |     const char* digits = "0123456789";
      |                 ^~~~~~
/<<PKGBUILDDIR>>/include/Utils.h:261:17: warning: ‘{anonymous}::spaces’ defined but not used [-Wunused-variable]
  261 |     const char* spaces = " \t";
      |                 ^~~~~~
[100%] Linking CXX executable MMB
/usr/bin/cmake -E cmake_link_script CMakeFiles/MMB_EXEC.dir/link.txt --verbose=1
/usr/bin/s390x-linux-gnu-g++ -D BuildNtC -D USE_OPENMM -g -O2 -ffile-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -O0 -fvisibility=hidden -Wall -pedantic -O3 -DNDEBUG -Wl,-z,relro -Wl,--dependency-file=CMakeFiles/MMB_EXEC.dir/link.d CMakeFiles/MMB_EXEC.dir/src/RNABuilder.cpp.o -o MMB   -L/<<PKGBUILDDIR>>/SYSTEM  -Wl,-rpath,/<<PKGBUILDDIR>>/SYSTEM:/<<PKGBUILDDIR>>/obj-s390x-linux-gnu: libMMB.so.4.1 /usr/lib/s390x-linux-gnu/libz.so /usr/lib/s390x-linux-gnu/libSimTKmolmodel.so.3.1 /usr/lib/s390x-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/s390x-linux-gnu/libSimTKmath.so.3.7 /usr/lib/s390x-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/s390x-linux-gnu/libblas.so /usr/lib/s390x-linux-gnu/liblapack.so /usr/lib/s390x-linux-gnu/libblas.so /usr/lib/s390x-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm
make[3]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
[100%] Built target MMB_EXEC
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
/usr/bin/cmake -E cmake_progress_start /<<PKGBUILDDIR>>/obj-s390x-linux-gnu/CMakeFiles 0
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck"
   create-stamp debian/debhelper-build-stamp
   dh_prep -a
   dh_auto_install -a
	cd obj-s390x-linux-gnu && make -j1 install DESTDIR=/<<BUILDDIR>>/macromoleculebuilder-4.2\+dfsg/debian/tmp AM_UPDATE_INFO_DIR=no INSTALL="install --strip-program=true"
make[1]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
/usr/bin/cmake -S/<<PKGBUILDDIR>> -B/<<PKGBUILDDIR>>/obj-s390x-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0
make  -f CMakeFiles/Makefile2 preinstall
make[2]: Entering directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
make[2]: Nothing to be done for 'preinstall'.
make[2]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
Install the project...
/usr/bin/cmake -P cmake_install.cmake
-- Install configuration: "Release"
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/AddBackboneOxygenForces.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/AddNASTForces.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/AtomSpringContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/BaseInteractionParameterReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/BasePairContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/BiopolymerClass.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/BiopolymerClassTwoTransformForces.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/CalcTransformCorrection.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/CenterOfMass.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/CifOutput.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Constexpr.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ConstraintContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ContactContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/DensityContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/DensityForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/DensityMap.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/DisplacementContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ElectrostaticPotentialGridForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ExportMacros.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ExtraMath.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/GeometricCenter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/HarmonicVelocityRescalingThermostat.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Impossible.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/KBBackboneTorsionForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Lepton.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/LigandDroplet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Ligands.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Ligands.sam.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/MMBLogger.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/MobilizerContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/MoleculeContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/MonoAtoms.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Mutation.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NTC_FORCE_CLASS.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NTC_PARAMETER_READER.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NtCBackboneTorsionForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NtCForces.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NtCInteractionParameterReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/NtC_Class_Container.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ParameterReader.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ParameterReader_wrapper.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicParameterReaderUpdater.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicPdbAndCOMWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicPdbAndEnergySingleFrameWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicPdbAndEnergyWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicPdbSingleFrameWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/PeriodicScrubber.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ProgressWriter.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/RandomizeRNACoordinates.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Repel.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/ResidueStretchContainer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/RigidifyFormedHelices.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/SetChiMobility.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/SetSingleBondMobility.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Spiral.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/StackingForceSubsystem.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Sterics.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/TetherForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Threading.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/UnitCellParameters.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Utils.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/WadleyKeatingDuartePyleTorsionForce.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/Water.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/WaterDroplet.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/superimposer.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/include/MMB/MMB_config.h
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/libMMB.so.4.1
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/libMMB.so.4.1" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/libMMB.so
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/share/MMB/parameters.csv
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/bin/MMB
-- Set non-toolchain portion of runtime path of "/<<PKGBUILDDIR>>/debian/tmp/usr/bin/MMB" to ""
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/cmake/mmb/MmbConfigVersion.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/cmake/mmb/MmbTargets.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/cmake/mmb/MmbTargets-release.cmake
-- Installing: /<<PKGBUILDDIR>>/debian/tmp/usr/lib/s390x-linux-gnu/pkgconfig/mmb.pc
make[1]: Leaving directory '/<<PKGBUILDDIR>>/obj-s390x-linux-gnu'
   dh_install -a
   dh_installdocs -a
   dh_installchangelogs -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
a2x -d manpage -f manpage -D debian/tmp debian/MMB.1.asciidoc
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_dwz -a
   dh_strip -a
   dh_makeshlibs -a
   dh_shlibdeps -a
dpkg-shlibdeps: warning: symbol gzeof used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzopen used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzbuffer used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzclose_r used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzgetc used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzungetc used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzgets used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzerror used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: symbol gzread used by debian/libmmb4.1/usr/lib/s390x-linux-gnu/libMMB.so.4.1 found in none of the libraries
dpkg-shlibdeps: warning: package could avoid a useless dependency if debian/mmb/usr/bin/MMB was not linked against libz.so.1 (it uses none of the library's symbols)
   dh_installdeb -a
   dh_gencontrol -a
   dh_md5sums -a
   dh_builddeb -a
dpkg-deb: building package 'libmmb-dev' in '../libmmb-dev_4.2+dfsg-1_s390x.deb'.
dpkg-deb: building package 'libmmb4.1' in '../libmmb4.1_4.2+dfsg-1_s390x.deb'.
dpkg-deb: building package 'libmmb4.1-dbgsym' in '../libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb'.
dpkg-deb: building package 'mmb' in '../mmb_4.2+dfsg-1_s390x.deb'.
dpkg-deb: building package 'mmb-dbgsym' in '../mmb-dbgsym_4.2+dfsg-1_s390x.deb'.
 dpkg-genbuildinfo --build=any -O../macromoleculebuilder_4.2+dfsg-1_s390x.buildinfo
 dpkg-genchanges --build=any -O../macromoleculebuilder_4.2+dfsg-1_s390x.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2025-11-26T22:30:27Z

+------------------------------------------------------------------------------+
| Finished Timed Build Commands                                                |
+------------------------------------------------------------------------------+


rm -Rf /<<PKGBUILDDIR>>/
------------------------------------------------------------------------


I: Finished running 'rm -Rf /<<PKGBUILDDIR>>/'.

Finished processing commands.
--------------------------------------------------------------------------------

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


macromoleculebuilder_4.2+dfsg-1_s390x.changes:
----------------------------------------------

Format: 1.8
Date: Fri, 21 Nov 2025 07:44:58 -0500
Source: macromoleculebuilder
Binary: libmmb-dev libmmb4.1 libmmb4.1-dbgsym mmb mmb-dbgsym
Built-For-Profiles: cross nocheck
Architecture: s390x
Version: 4.2+dfsg-1
Distribution: unstable
Urgency: medium
Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
Changed-By: Andrius Merkys <merkys@debian.org>
Description:
 libmmb-dev - development files of MacroMoleculeBuilder
 libmmb4.1  - shared library of MacroMoleculeBuilder
 mmb        - model the structure and dynamics of macromolecules
Closes: 1113261 1114196
Changes:
 macromoleculebuilder (4.2+dfsg-1) unstable; urgency=medium
 .
   * New upstream release 4.2+dfsg (Closes: #1113261)
   * Update file exclusion list.
   * Review patches.
   * Fix incompatibility with gemmi >= 0.7.0 (Closes: #1114196)
   * Adjust to soname change.
Checksums-Sha1:
 918771556f8e4b246f654e42f974f20487051b5c 76980 libmmb-dev_4.2+dfsg-1_s390x.deb
 801dd2831e57c67829b48f9d462c87c7c29e9611 25033412 libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 a0c244cb4728d5a38c64bbeabbf6077e0ebe3e7a 1184404 libmmb4.1_4.2+dfsg-1_s390x.deb
 97e37044965f17ee41b2eb484a1430bb06f9ae7b 9944 macromoleculebuilder_4.2+dfsg-1_s390x.buildinfo
 63d6be81cf3fb1a11272c60e74d540e6b5d5023e 1599728 mmb-dbgsym_4.2+dfsg-1_s390x.deb
 71f1a9339608d7f3b556d6d2b9d65674ec8d7b58 29840 mmb_4.2+dfsg-1_s390x.deb
Checksums-Sha256:
 5db8a2852a71673c53dbaa2ca48c591157b649184e61c67056d4d525a63d8254 76980 libmmb-dev_4.2+dfsg-1_s390x.deb
 44a3f0518241215005c58b6a823f3257c7797b8d8ca3d36aebe0925feb05f956 25033412 libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 f1aab6e09fea9bf8fceefe5e72ff7d4e5237850da02275f909002f36599a577f 1184404 libmmb4.1_4.2+dfsg-1_s390x.deb
 3b9afebcb89cedca1f8d413e96679ae9c3d3b62f3fcbb6499a3d7f63742ae0dc 9944 macromoleculebuilder_4.2+dfsg-1_s390x.buildinfo
 dcc77402438028d2ccefe79354aceba751fea75838df248e3ff6a7ce4c192779 1599728 mmb-dbgsym_4.2+dfsg-1_s390x.deb
 fa13e778138101fa09774ddb42da25867115e473e2695129fe0e2d8b96bfc3e8 29840 mmb_4.2+dfsg-1_s390x.deb
Files:
 3ce863b05e6c1eefef830732d3a9ad01 76980 libdevel optional libmmb-dev_4.2+dfsg-1_s390x.deb
 5c3646ef9671cee458a19d4d2f8cc7c8 25033412 debug optional libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 a4fd6d038b15f23215cf2e8777304f04 1184404 libs optional libmmb4.1_4.2+dfsg-1_s390x.deb
 2a972c1b88db3ac5f658a78a4b16a23b 9944 science optional macromoleculebuilder_4.2+dfsg-1_s390x.buildinfo
 c7e04c842c8d569225fec6c2d8c897b3 1599728 debug optional mmb-dbgsym_4.2+dfsg-1_s390x.deb
 52684e0b60338ca38b2d4e121ec287d0 29840 science optional mmb_4.2+dfsg-1_s390x.deb

+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: macromoleculebuilder
Binary: libmmb-dev libmmb4.1 libmmb4.1-dbgsym mmb mmb-dbgsym
Architecture: s390x
Version: 4.2+dfsg-1
Checksums-Md5:
 3ce863b05e6c1eefef830732d3a9ad01 76980 libmmb-dev_4.2+dfsg-1_s390x.deb
 5c3646ef9671cee458a19d4d2f8cc7c8 25033412 libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 a4fd6d038b15f23215cf2e8777304f04 1184404 libmmb4.1_4.2+dfsg-1_s390x.deb
 c7e04c842c8d569225fec6c2d8c897b3 1599728 mmb-dbgsym_4.2+dfsg-1_s390x.deb
 52684e0b60338ca38b2d4e121ec287d0 29840 mmb_4.2+dfsg-1_s390x.deb
Checksums-Sha1:
 918771556f8e4b246f654e42f974f20487051b5c 76980 libmmb-dev_4.2+dfsg-1_s390x.deb
 801dd2831e57c67829b48f9d462c87c7c29e9611 25033412 libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 a0c244cb4728d5a38c64bbeabbf6077e0ebe3e7a 1184404 libmmb4.1_4.2+dfsg-1_s390x.deb
 63d6be81cf3fb1a11272c60e74d540e6b5d5023e 1599728 mmb-dbgsym_4.2+dfsg-1_s390x.deb
 71f1a9339608d7f3b556d6d2b9d65674ec8d7b58 29840 mmb_4.2+dfsg-1_s390x.deb
Checksums-Sha256:
 5db8a2852a71673c53dbaa2ca48c591157b649184e61c67056d4d525a63d8254 76980 libmmb-dev_4.2+dfsg-1_s390x.deb
 44a3f0518241215005c58b6a823f3257c7797b8d8ca3d36aebe0925feb05f956 25033412 libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
 f1aab6e09fea9bf8fceefe5e72ff7d4e5237850da02275f909002f36599a577f 1184404 libmmb4.1_4.2+dfsg-1_s390x.deb
 dcc77402438028d2ccefe79354aceba751fea75838df248e3ff6a7ce4c192779 1599728 mmb-dbgsym_4.2+dfsg-1_s390x.deb
 fa13e778138101fa09774ddb42da25867115e473e2695129fe0e2d8b96bfc3e8 29840 mmb_4.2+dfsg-1_s390x.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Wed, 26 Nov 2025 22:30:27 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 architecture-properties (= 0.2.6),
 asciidoc-base (= 10.2.1-1),
 asciidoc-common (= 10.2.1-1),
 autoconf (= 2.72-3.1),
 automake (= 1:1.18.1-3),
 autopoint (= 0.23.2-1),
 autotools-dev (= 20240727.1),
 base-files (= 14),
 base-passwd (= 3.6.8),
 bash (= 5.3-1),
 binutils (= 2.45.50.20251125-1),
 binutils-common (= 2.45.50.20251125-1),
 binutils-x86-64-linux-gnu (= 2.45.50.20251125-1),
 bsdextrautils (= 2.41.2-4),
 build-essential (= 12.12),
 bzip2 (= 1.0.8-6),
 cmake (= 4.1.1+really3.31.6-2),
 cmake-data (= 4.1.1+really3.31.6-2),
 coreutils (= 9.7-3),
 cpp (= 4:15.2.0-4),
 cpp-15 (= 15.2.0-9),
 cpp-15-x86-64-linux-gnu (= 15.2.0-9),
 cpp-x86-64-linux-gnu (= 4:15.2.0-4),
 dash (= 0.5.12-12),
 debconf (= 1.5.91),
 debhelper (= 13.28),
 debianutils (= 5.23.2),
 dh-autoreconf (= 21),
 dh-strip-nondeterminism (= 1.15.0-1),
 diffutils (= 1:3.12-1),
 docbook-xml (= 4.5-13),
 docbook-xsl (= 1.79.2+dfsg-8),
 dpkg (= 1.22.21),
 dpkg-dev (= 1.22.21),
 dwz (= 0.16-2),
 file (= 1:5.46-5),
 findutils (= 4.10.0-3),
 freeglut3-dev (= 3.4.0-6),
 g++ (= 4:15.2.0-4),
 g++-15 (= 15.2.0-9),
 g++-15-x86-64-linux-gnu (= 15.2.0-9),
 g++-x86-64-linux-gnu (= 4:15.2.0-4),
 gcc (= 4:15.2.0-4),
 gcc-15 (= 15.2.0-9),
 gcc-15-base (= 15.2.0-9),
 gcc-15-x86-64-linux-gnu (= 15.2.0-9),
 gcc-x86-64-linux-gnu (= 4:15.2.0-4),
 gemmi-dev (= 0.7.1+ds-2),
 gettext (= 0.23.2-1),
 gettext-base (= 0.23.2-1),
 grep (= 3.12-1),
 groff-base (= 1.23.0-9),
 gzip (= 1.13-1),
 hostname (= 3.25),
 init-system-helpers (= 1.69),
 intltool-debian (= 0.35.0+20060710.6),
 libacl1 (= 2.3.2-2+b1),
 libarchive-zip-perl (= 1.68-1),
 libarchive13t64 (= 3.7.4-4+b1),
 libasan8 (= 15.2.0-9),
 libatomic1 (= 15.2.0-9),
 libattr1 (= 1:2.5.2-3),
 libaudit-common (= 1:4.1.2-1),
 libaudit1 (= 1:4.1.2-1),
 libbinutils (= 2.45.50.20251125-1),
 libblas-dev (= 3.12.1-7),
 libblas3 (= 3.12.1-7),
 libblkid1 (= 2.41.2-4),
 libbrotli1 (= 1.1.0-2+b7),
 libbsd0 (= 0.12.2-2),
 libbz2-1.0 (= 1.0.8-6),
 libc-bin (= 2.41-12),
 libc-dev-bin (= 2.41-12),
 libc6 (= 2.41-12),
 libc6-dev (= 2.41-12),
 libcap-ng0 (= 0.8.5-4+b1),
 libcap2 (= 1:2.75-10+b1),
 libcc1-0 (= 15.2.0-9),
 libcom-err2 (= 1.47.2-3+b3),
 libcrypt-dev (= 1:4.5.1-1),
 libcrypt1 (= 1:4.5.1-1),
 libctf-nobfd0 (= 2.45.50.20251125-1),
 libctf0 (= 2.45.50.20251125-1),
 libcurl4t64 (= 8.17.0-3),
 libdb5.3t64 (= 5.3.28+dfsg2-10),
 libdebconfclient0 (= 0.282),
 libdebhelper-perl (= 13.28),
 libdpkg-perl (= 1.22.21),
 libdrm-amdgpu1 (= 2.4.127-1),
 libdrm-common (= 2.4.127-1),
 libdrm2 (= 2.4.127-1),
 libedit2 (= 3.1-20250104-1),
 libelf1t64 (= 0.194-1),
 libexpat1 (= 2.7.3-1),
 libffi8 (= 3.5.2-2),
 libfile-stripnondeterminism-perl (= 1.15.0-1),
 libgbm1 (= 25.2.7-1),
 libgcc-15-dev (= 15.2.0-9),
 libgcc-s1 (= 15.2.0-9),
 libgcrypt20 (= 1.11.2-3),
 libgdbm-compat4t64 (= 1.26-1),
 libgdbm6t64 (= 1.26-1),
 libgfortran5 (= 15.2.0-9),
 libgl-dev (= 1.7.0-1+b2),
 libgl1 (= 1.7.0-1+b2),
 libgl1-mesa-dri (= 25.2.7-1),
 libglu1-mesa (= 9.0.2-1.1+b3),
 libglu1-mesa-dev (= 9.0.2-1.1+b3),
 libglut-dev (= 3.4.0-6),
 libglut3.12 (= 3.4.0-6),
 libglvnd0 (= 1.7.0-1+b2),
 libglx-dev (= 1.7.0-1+b2),
 libglx-mesa0 (= 25.2.7-1),
 libglx0 (= 1.7.0-1+b2),
 libgmp10 (= 2:6.3.0+dfsg-5),
 libgnutls30t64 (= 3.8.11-3),
 libgomp1 (= 15.2.0-9),
 libgpg-error0 (= 1.56-2),
 libgprofng0 (= 2.45.50.20251125-1),
 libgssapi-krb5-2 (= 1.22.1-2),
 libhogweed6t64 (= 3.10.2-1),
 libhwasan0 (= 15.2.0-9),
 libice-dev (= 2:1.1.1-1),
 libice6 (= 2:1.1.1-1),
 libidn2-0 (= 2.3.8-4),
 libisl23 (= 0.27-1),
 libitm1 (= 15.2.0-9),
 libjansson4 (= 2.14-2+b3),
 libjsoncpp26 (= 1.9.6-5),
 libk5crypto3 (= 1.22.1-2),
 libkeyutils1 (= 1.6.3-6),
 libkrb5-3 (= 1.22.1-2),
 libkrb5support0 (= 1.22.1-2),
 liblapack-dev (= 3.12.1-7),
 liblapack3 (= 3.12.1-7),
 libldap2 (= 2.6.10+dfsg-1),
 libllvm19 (= 1:19.1.7-18),
 liblsan0 (= 15.2.0-9),
 liblz4-1 (= 1.10.0-6),
 liblzma5 (= 5.8.1-2),
 libmagic-mgc (= 1:5.46-5),
 libmagic1t64 (= 1:5.46-5),
 libmd0 (= 1.1.0-2+b1),
 libmount1 (= 2.41.2-4),
 libmpc3 (= 1.3.1-2),
 libmpfr6 (= 4.2.2-2),
 libncursesw6 (= 6.5+20251123-1),
 libnettle8t64 (= 3.10.2-1),
 libnghttp2-14 (= 1.64.0-1.1+b1),
 libnghttp3-9 (= 1.12.0-1),
 libngtcp2-16 (= 1.16.0-1),
 libngtcp2-crypto-ossl0 (= 1.16.0-1),
 libopengl-dev (= 1.7.0-1+b2),
 libopengl0 (= 1.7.0-1+b2),
 libopenmm-dev (= 8.1.2+dfsg-12),
 libopenmm8.1 (= 8.1.2+dfsg-12),
 libp11-kit0 (= 0.25.10-1),
 libpam-modules (= 1.7.0-5),
 libpam-modules-bin (= 1.7.0-5),
 libpam-runtime (= 1.7.0-5),
 libpam0g (= 1.7.0-5),
 libpcre2-8-0 (= 10.46-1),
 libperl5.40 (= 5.40.1-7),
 libpipeline1 (= 1.5.8-2),
 libproc2-0 (= 2:4.0.4-9),
 libpsl5t64 (= 0.21.2-1.1+b1),
 libpython3-stdlib (= 3.13.7-1),
 libpython3.13-minimal (= 3.13.9-1),
 libpython3.13-stdlib (= 3.13.9-1),
 libquadmath0 (= 15.2.0-9),
 libreadline8t64 (= 8.3-3),
 librhash1 (= 1.4.6-1.1),
 librtmp1 (= 2.4+20151223.gitfa8646d.1-3),
 libsasl2-2 (= 2.1.28+dfsg1-10),
 libsasl2-modules-db (= 2.1.28+dfsg1-10),
 libseccomp2 (= 2.6.0-2),
 libselinux1 (= 3.9-4),
 libsensors-config (= 1:3.6.2-2),
 libsensors5 (= 1:3.6.2-2),
 libseqan2-dev (= 2.4.0+dfsg-16),
 libsframe2 (= 2.45.50.20251125-1),
 libsimbody-dev (= 3.7+dfsg-5),
 libsimbody3.7 (= 3.7+dfsg-5),
 libsimtkmolmodel-dev (= 3.1.0-4.1+b4),
 libsimtkmolmodel-plugins (= 3.1.0-4.1+b4),
 libsimtkmolmodel3.1t64 (= 3.1.0-4.1+b4),
 libsm-dev (= 2:1.2.6-1),
 libsm6 (= 2:1.2.6-1),
 libsmartcols1 (= 2.41.2-4),
 libsqlite3-0 (= 3.46.1-8),
 libssh2-1t64 (= 1.11.1-1),
 libssl3t64 (= 3.5.4-1),
 libstb-dev (= 0.0~git20250907.fede005+ds-1),
 libstb0t64 (= 0.0~git20250907.fede005+ds-1),
 libstdc++-15-dev (= 15.2.0-9),
 libstdc++6 (= 15.2.0-9),
 libsystemd0 (= 259~rc2-1),
 libtasn1-6 (= 4.20.0-2),
 libtinfo6 (= 6.5+20251123-1),
 libtool (= 2.5.4-7),
 libtsan2 (= 15.2.0-9),
 libubsan1 (= 15.2.0-9),
 libuchardet0 (= 0.0.8-2),
 libudev1 (= 259~rc2-1),
 libunistring5 (= 1.3-2),
 libuuid1 (= 2.41.2-4),
 libuv1t64 (= 1.51.0-2),
 libvulkan1 (= 1.4.328.1-1),
 libx11-6 (= 2:1.8.12-1),
 libx11-data (= 2:1.8.12-1),
 libx11-dev (= 2:1.8.12-1),
 libx11-xcb1 (= 2:1.8.12-1),
 libxau-dev (= 1:1.0.11-1),
 libxau6 (= 1:1.0.11-1),
 libxcb-dri3-0 (= 1.17.0-2+b1),
 libxcb-glx0 (= 1.17.0-2+b1),
 libxcb-present0 (= 1.17.0-2+b1),
 libxcb-randr0 (= 1.17.0-2+b1),
 libxcb-shm0 (= 1.17.0-2+b1),
 libxcb-sync1 (= 1.17.0-2+b1),
 libxcb-xfixes0 (= 1.17.0-2+b1),
 libxcb1 (= 1.17.0-2+b1),
 libxcb1-dev (= 1.17.0-2+b1),
 libxdmcp-dev (= 1:1.1.5-1),
 libxdmcp6 (= 1:1.1.5-1),
 libxext-dev (= 2:1.3.4-1+b3),
 libxext6 (= 2:1.3.4-1+b3),
 libxfixes-dev (= 1:6.0.0-2+b4),
 libxfixes3 (= 1:6.0.0-2+b4),
 libxi-dev (= 2:1.8.2-1),
 libxi6 (= 2:1.8.2-1),
 libxml2-16 (= 2.15.1+dfsg-2),
 libxml2-utils (= 2.15.1+dfsg-2),
 libxmu-dev (= 2:1.1.3-3+b4),
 libxmu-headers (= 2:1.1.3-3),
 libxmu6 (= 2:1.1.3-3+b4),
 libxshmfence1 (= 1.3.3-1),
 libxslt1.1 (= 1.1.43-0.3),
 libxt-dev (= 1:1.2.1-1.3),
 libxt6t64 (= 1:1.2.1-1.3),
 libxxf86vm1 (= 1:1.1.4-2),
 libxxhash0 (= 0.8.3-2),
 libz3-4 (= 4.13.3-1),
 libzstd1 (= 1.5.7+dfsg-2),
 linux-libc-dev (= 6.17.9-1),
 m4 (= 1.4.20-2),
 make (= 4.4.1-3),
 man-db (= 2.13.1-1),
 mawk (= 1.3.4.20250131-1),
 media-types (= 14.0.0),
 mesa-libgallium (= 25.2.7-1),
 ncurses-base (= 6.5+20251123-1),
 ncurses-bin (= 6.5+20251123-1),
 netbase (= 6.5),
 openssl-provider-legacy (= 3.5.4-1),
 patch (= 2.8-2),
 perl (= 5.40.1-7),
 perl-base (= 5.40.1-7),
 perl-modules-5.40 (= 5.40.1-7),
 po-debconf (= 1.0.21+nmu1),
 procps (= 2:4.0.4-9),
 python3 (= 3.13.7-1),
 python3-minimal (= 3.13.7-1),
 python3.13 (= 3.13.9-1),
 python3.13-minimal (= 3.13.9-1),
 readline-common (= 8.3-3),
 rpcsvc-proto (= 1.4.3-1),
 sed (= 4.9-2),
 sensible-utils (= 0.0.26),
 sgml-base (= 1.31+nmu1),
 sgml-data (= 2.0.11+nmu1),
 sysvinit-utils (= 3.15-6),
 tao-pegtl-dev (= 3.2.7-1),
 tar (= 1.35+dfsg-3.1),
 tzdata (= 2025b-5),
 util-linux (= 2.41.2-4),
 uuid-dev (= 2.41.2-4),
 x11-common (= 1:7.7+26),
 x11proto-dev (= 2024.1-1),
 xml-core (= 0.19),
 xorg-sgml-doctools (= 1:1.11-1.1),
 xsltproc (= 1.1.43-0.3),
 xtrans-dev (= 1.6.0-1),
 xz-utils (= 5.8.1-2),
 zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1),
 zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="C.UTF-8"
 LC_COLLATE="C.UTF-8"
 LC_CTYPE="C.UTF-8"
 SOURCE_DATE_EPOCH="1763729098"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libmmb-dev_4.2+dfsg-1_s390x.deb
-------------------------------

 new Debian package, version 2.0.
 size 76980 bytes: control archive=2892 bytes.
     770 bytes,    20 lines      control
    5105 bytes,    72 lines      md5sums
 Package: libmmb-dev
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: s390x
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 560
 Depends: libmmb4.1 (= 4.2+dfsg-1)
 Breaks: libmmblib-dev (<< 4.0.0)
 Replaces: libmmblib-dev (<< 4.0.0)
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: development files of MacroMoleculeBuilder
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.
  .
  This package contains the development files.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/include/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/include/MMB/
-rw-r--r-- root/root      8108 2025-01-24 10:51 ./usr/include/MMB/AddBackboneOxygenForces.h
-rw-r--r-- root/root      6293 2025-01-24 10:51 ./usr/include/MMB/AddNASTForces.h
-rw-r--r-- root/root      7275 2025-01-24 10:51 ./usr/include/MMB/AtomSpringContainer.h
-rw-r--r-- root/root      3559 2025-01-24 10:51 ./usr/include/MMB/BaseInteractionParameterReader.h
-rw-r--r-- root/root      3477 2025-01-24 10:51 ./usr/include/MMB/BasePairContainer.h
-rw-r--r-- root/root     42905 2025-01-24 10:51 ./usr/include/MMB/BiopolymerClass.h
-rw-r--r-- root/root      2644 2025-01-24 10:51 ./usr/include/MMB/BiopolymerClassTwoTransformForces.h
-rw-r--r-- root/root     19309 2025-01-24 10:51 ./usr/include/MMB/CalcTransformCorrection.h
-rw-r--r-- root/root      3188 2025-01-24 10:51 ./usr/include/MMB/CenterOfMass.h
-rw-r--r-- root/root      1328 2025-01-24 10:51 ./usr/include/MMB/CifOutput.h
-rw-r--r-- root/root       188 2025-01-24 10:51 ./usr/include/MMB/Constexpr.h
-rw-r--r-- root/root      3848 2025-01-24 10:51 ./usr/include/MMB/ConstraintContainer.h
-rw-r--r-- root/root      3295 2025-01-24 10:51 ./usr/include/MMB/ContactContainer.h
-rw-r--r-- root/root      1793 2025-01-24 10:51 ./usr/include/MMB/DensityContainer.h
-rw-r--r-- root/root      2105 2025-01-24 10:51 ./usr/include/MMB/DensityForce.h
-rw-r--r-- root/root      7794 2025-01-24 10:51 ./usr/include/MMB/DensityMap.h
-rw-r--r-- root/root      1912 2025-01-24 10:51 ./usr/include/MMB/DisplacementContainer.h
-rw-r--r-- root/root      2165 2025-01-24 10:51 ./usr/include/MMB/ElectrostaticPotentialGridForce.h
-rw-r--r-- root/root      3001 2025-01-24 10:51 ./usr/include/MMB/ExportMacros.h
-rw-r--r-- root/root       752 2025-01-24 10:51 ./usr/include/MMB/ExtraMath.h
-rw-r--r-- root/root      1756 2025-01-24 10:51 ./usr/include/MMB/GeometricCenter.h
-rw-r--r-- root/root      4613 2025-01-24 10:51 ./usr/include/MMB/HarmonicVelocityRescalingThermostat.h
-rw-r--r-- root/root       227 2025-01-24 10:51 ./usr/include/MMB/Impossible.h
-rw-r--r-- root/root      4871 2025-01-24 10:51 ./usr/include/MMB/KBBackboneTorsionForce.h
-rw-r--r-- root/root       312 2025-01-24 10:51 ./usr/include/MMB/Lepton.h
-rw-r--r-- root/root      8211 2025-01-24 10:51 ./usr/include/MMB/LigandDroplet.h
-rw-r--r-- root/root     16881 2025-01-24 10:51 ./usr/include/MMB/Ligands.h
-rw-r--r-- root/root     16712 2025-01-24 10:51 ./usr/include/MMB/Ligands.sam.h
-rw-r--r-- root/root      3130 2025-01-24 10:51 ./usr/include/MMB/MMBLogger.h
-rw-r--r-- root/root        91 2025-11-21 12:44 ./usr/include/MMB/MMB_config.h
-rw-r--r-- root/root      5172 2025-01-24 10:51 ./usr/include/MMB/MobilizerContainer.h
-rw-r--r-- root/root      3821 2025-01-24 10:51 ./usr/include/MMB/MoleculeContainer.h
-rw-r--r-- root/root      4156 2025-01-24 10:51 ./usr/include/MMB/MonoAtoms.h
-rw-r--r-- root/root      7486 2025-01-24 10:51 ./usr/include/MMB/Mutation.h
-rw-r--r-- root/root       328 2025-01-24 10:51 ./usr/include/MMB/NTC_FORCE_CLASS.h
-rw-r--r-- root/root      4598 2025-01-24 10:51 ./usr/include/MMB/NTC_PARAMETER_READER.h
-rw-r--r-- root/root      4871 2025-01-24 10:51 ./usr/include/MMB/NtCBackboneTorsionForce.h
-rw-r--r-- root/root      1747 2025-01-24 10:51 ./usr/include/MMB/NtCForces.h
-rw-r--r-- root/root      4568 2025-01-24 10:51 ./usr/include/MMB/NtCInteractionParameterReader.h
-rw-r--r-- root/root      2181 2025-01-24 10:51 ./usr/include/MMB/NtC_Class_Container.h
-rw-r--r-- root/root     15557 2025-01-24 10:51 ./usr/include/MMB/ParameterReader.h
-rw-r--r-- root/root     56249 2025-01-24 10:51 ./usr/include/MMB/ParameterReader_wrapper.h
-rw-r--r-- root/root      5300 2025-01-24 10:51 ./usr/include/MMB/PeriodicParameterReaderUpdater.h
-rw-r--r-- root/root      5408 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndCOMWriter.h
-rw-r--r-- root/root      3151 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndEnergySingleFrameWriter.h
-rw-r--r-- root/root      2002 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbAndEnergyWriter.h
-rw-r--r-- root/root      4985 2025-01-24 10:51 ./usr/include/MMB/PeriodicPdbSingleFrameWriter.h
-rw-r--r-- root/root      4299 2025-01-24 10:51 ./usr/include/MMB/PeriodicScrubber.h
-rw-r--r-- root/root      1615 2025-01-24 10:51 ./usr/include/MMB/ProgressWriter.h
-rw-r--r-- root/root      8487 2025-01-24 10:51 ./usr/include/MMB/RandomizeRNACoordinates.h
-rw-r--r-- root/root      8587 2025-01-24 10:51 ./usr/include/MMB/Repel.h
-rw-r--r-- root/root     23997 2025-01-24 10:51 ./usr/include/MMB/ResidueStretchContainer.h
-rw-r--r-- root/root     12884 2025-01-24 10:51 ./usr/include/MMB/RigidifyFormedHelices.h
-rw-r--r-- root/root      7179 2025-01-24 10:51 ./usr/include/MMB/SetChiMobility.h
-rw-r--r-- root/root      3252 2025-01-24 10:51 ./usr/include/MMB/SetSingleBondMobility.h
-rw-r--r-- root/root      3132 2025-01-24 10:51 ./usr/include/MMB/Spiral.h
-rw-r--r-- root/root      2359 2025-01-24 10:51 ./usr/include/MMB/StackingForceSubsystem.h
-rw-r--r-- root/root     15674 2025-01-24 10:51 ./usr/include/MMB/Sterics.h
-rw-r--r-- root/root      1958 2025-01-24 10:51 ./usr/include/MMB/TetherForce.h
-rw-r--r-- root/root     13450 2025-01-24 10:51 ./usr/include/MMB/Threading.h
-rw-r--r-- root/root      5366 2025-01-24 10:51 ./usr/include/MMB/UnitCellParameters.h
-rw-r--r-- root/root     61244 2025-01-24 10:51 ./usr/include/MMB/Utils.h
-rw-r--r-- root/root     12299 2025-01-24 10:51 ./usr/include/MMB/WadleyKeatingDuartePyleTorsionForce.h
-rw-r--r-- root/root      2817 2025-01-24 10:51 ./usr/include/MMB/Water.h
-rw-r--r-- root/root      3544 2025-01-24 10:51 ./usr/include/MMB/WaterDroplet.h
-rw-r--r-- root/root       845 2025-01-24 10:51 ./usr/include/MMB/superimposer.h
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/cmake/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/cmake/mmb/
-rw-r--r-- root/root      2756 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/cmake/mmb/MmbConfigVersion.cmake
-rw-r--r-- root/root       816 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/cmake/mmb/MmbTargets-release.cmake
-rw-r--r-- root/root      4539 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/cmake/mmb/MmbTargets.cmake
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/libMMB.so -> libMMB.so.4.1
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/pkgconfig/
-rw-r--r-- root/root       193 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/pkgconfig/mmb.pc
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/libmmb-dev/copyright


libmmb4.1-dbgsym_4.2+dfsg-1_s390x.deb
-------------------------------------

 new Debian package, version 2.0.
 size 25033412 bytes: control archive=560 bytes.
     396 bytes,    13 lines      control
     106 bytes,     1 lines      md5sums
 Package: libmmb4.1-dbgsym
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 26240
 Depends: libmmb4.1 (= 4.2+dfsg-1)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libmmb4.1
 Build-Ids: c2f74d6b86e1ce6bdfbae3986703739785e19ce7

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/c2/
-rw-r--r-- root/root  26859496 2025-11-21 12:44 ./usr/lib/debug/.build-id/c2/f74d6b86e1ce6bdfbae3986703739785e19ce7.debug
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb4.1-dbgsym -> libmmb4.1


libmmb4.1_4.2+dfsg-1_s390x.deb
------------------------------

 new Debian package, version 2.0.
 size 1184404 bytes: control archive=996 bytes.
     817 bytes,    18 lines      control
     218 bytes,     3 lines      md5sums
      35 bytes,     1 lines      shlibs
      66 bytes,     2 lines      triggers
 Package: libmmb4.1
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: s390x
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 4750
 Depends: libc6 (>= 2.38), libgcc-s1 (>= 3.0), libopenmm8.1 (>= 8.1.2+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 14)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: shared library of MacroMoleculeBuilder
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.
  .
  This package contains the shared library.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/
-rw-r--r-- root/root   4849104 2025-11-21 12:44 ./usr/lib/s390x-linux-gnu/libMMB.so.4.1
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/libmmb4.1/copyright


mmb-dbgsym_4.2+dfsg-1_s390x.deb
-------------------------------

 new Debian package, version 2.0.
 size 1599728 bytes: control archive=540 bytes.
     360 bytes,    12 lines      control
     106 bytes,     1 lines      md5sums
 Package: mmb-dbgsym
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 1703
 Depends: mmb (= 4.2+dfsg-1)
 Section: debug
 Priority: optional
 Description: debug symbols for mmb
 Build-Ids: 52ac19d6e197cd6da9c5c0aebf61c497a885f9ab

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/lib/debug/.build-id/52/
-rw-r--r-- root/root   1733296 2025-11-21 12:44 ./usr/lib/debug/.build-id/52/ac19d6e197cd6da9c5c0aebf61c497a885f9ab.debug
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
lrwxrwxrwx root/root         0 2025-11-21 12:44 ./usr/share/doc/mmb-dbgsym -> mmb


mmb_4.2+dfsg-1_s390x.deb
------------------------

 new Debian package, version 2.0.
 size 29840 bytes: control archive=896 bytes.
     792 bytes,    15 lines      control
     242 bytes,     4 lines      md5sums
 Package: mmb
 Source: macromoleculebuilder
 Version: 4.2+dfsg-1
 Architecture: s390x
 Maintainer: Debichem Team <debichem-devel@lists.alioth.debian.org>
 Installed-Size: 114
 Depends: mmb-common, libc6 (>= 2.34), libgcc-s1 (>= 3.0), libmmb4.1 (>= 4.2+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 13.1), zlib1g (>= 1:1.1.4)
 Section: science
 Priority: optional
 Homepage: https://simtk.org/projects/rnatoolbox
 Description: model the structure and dynamics of macromolecules
  MacroMoleculeBuilder, previously known as RNABuilder, can be used for morphing,
  homology modeling, folding (e.g. using base pairing contacts), redesigning
  complexes, fitting to low-resolution density maps, predicting local
  rearrangements upon mutation, and many other applications.

drwxr-xr-x root/root         0 2025-11-21 12:44 ./
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/bin/
-rwxr-xr-x root/root    101456 2025-11-21 12:44 ./usr/bin/MMB
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/doc/mmb/
-rw-r--r-- root/root      1479 2025-11-21 12:44 ./usr/share/doc/mmb/changelog.Debian.gz
-rw-r--r-- root/root      1977 2025-11-21 12:44 ./usr/share/doc/mmb/copyright
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/man/
drwxr-xr-x root/root         0 2025-11-21 12:44 ./usr/share/man/man1/
-rw-r--r-- root/root       787 2025-11-21 12:44 ./usr/share/man/man1/MMB.1.gz


lintian
-------


Setup apt archive
-----------------

Merged Build-Depends: lintian:amd64
Filtered Build-Depends: lintian:amd64
dpkg-deb: warning: root directory /<<RESOLVERDIR>>/sbuild-build-depends-lintian-dummy has unusual owner or group 1000:119
dpkg-deb: hint: you might need to pass --root-owner-group, see <https://wiki.debian.org/Teams/Dpkg/RootlessBuilds> for further details
dpkg-deb: warning: ignoring 1 warning about the control file(s)
dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-lintian-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [615 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [1548 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [1628 B]
Fetched 3791 B in 0s (0 B/s)
Reading package lists...
Reading package lists...

Install lintian build dependencies (apt-based resolver)
-------------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
Execute external solver...
The following additional packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libimport-into-perl libio-html-perl
  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl
  liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libmouse-perl libnamespace-clean-perl
  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
  libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl
  libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl
  libstemmer0d libstrictures-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl
  libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils
  perl-openssl-defaults plzip shared-mime-info t1utils ucf unzip
Suggested packages:
  apt-config-icons isoquery libxml-parser-perl low-memory-monitor
  libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl
  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl
  libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip
Recommended packages:
  gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libhtml-format-perl
  libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl
  libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl
  libdata-dump-perl libhttp-daemon-perl libmailtools-perl
  libxml-sax-expat-perl
The following NEW packages will be installed:
  appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl
  libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl
  libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl
  libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl
  libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl
  libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl
  libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl
  libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl
  libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl
  libdevel-stacktrace-perl libdynaloader-functions-perl
  libemail-address-xs-perl libencode-locale-perl libexception-class-perl
  libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl
  libfile-sharedir-perl libfont-ttf-perl libfyaml0 libglib2.0-0t64
  libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl
  libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl
  libhttp-cookies-perl libhttp-date-perl libhttp-message-perl
  libhttp-negotiate-perl libimport-into-perl libio-html-perl
  libio-interactive-perl libio-socket-ssl-perl libio-string-perl
  libipc-run3-perl libipc-system-simple-perl libiterator-perl
  libiterator-util-perl libjson-maybexs-perl libksba8 liblist-compare-perl
  liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl
  liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl
  libmodule-implementation-perl libmodule-runtime-perl libmoo-perl
  libmoox-aliases-perl libmouse-perl libnamespace-clean-perl
  libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl
  libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl
  libngtcp2-crypto-gnutls8 libnpth0t64 libnumber-compare-perl
  libpackage-stash-perl libparams-classify-perl libparams-util-perl
  libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl
  libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl
  libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl
  libstemmer0d libstrictures-perl libsub-exporter-perl
  libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl
  libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl
  libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl
  libtext-levenshteinxs-perl libtext-markdown-discount-perl
  libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl
  libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl
  liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl
  libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl
  libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl
  libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils
  perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:s390x
  shared-mime-info t1utils ucf unzip
0 upgraded, 146 newly installed, 0 to remove and 0 not upgraded.
Need to get 17.0 MB of archives.
After this operation, 72.8 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://localhost:3142/debian unstable/main amd64 openssl amd64 3.5.4-1 [1496 kB]
Get:3 http://localhost:3142/debian unstable/main amd64 ca-certificates all 20250419 [162 kB]
Get:4 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B]
Get:5 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B]
Get:6 http://localhost:3142/debian unstable/main amd64 ucf all 3.0052 [43.3 kB]
Get:7 http://localhost:3142/debian unstable/main amd64 libglib2.0-0t64 amd64 2.86.2-1 [1547 kB]
Get:8 http://localhost:3142/debian unstable/main amd64 shared-mime-info amd64 2.4-5+b3 [758 kB]
Get:9 http://localhost:3142/debian unstable/main amd64 libngtcp2-crypto-gnutls8 amd64 1.16.0-1 [25.2 kB]
Get:10 http://localhost:3142/debian unstable/main amd64 libcurl3t64-gnutls amd64 8.17.0-3 [401 kB]
Get:11 http://localhost:3142/debian unstable/main amd64 libfyaml0 amd64 0.9-2 [252 kB]
Get:12 http://localhost:3142/debian unstable/main amd64 libstemmer0d amd64 3.0.1-1 [131 kB]
Get:13 http://localhost:3142/debian unstable/main amd64 libxmlb2 amd64 0.3.24-2 [63.7 kB]
Get:14 http://localhost:3142/debian unstable/main amd64 libappstream5 amd64 1.1.1-1 [228 kB]
Get:15 http://localhost:3142/debian unstable/main amd64 appstream amd64 1.1.1-1 [562 kB]
Get:16 http://localhost:3142/debian unstable/main amd64 diffstat amd64 1.68-1 [35.2 kB]
Get:17 http://localhost:3142/debian unstable/main amd64 libassuan9 amd64 3.0.2-2 [61.5 kB]
Get:18 http://localhost:3142/debian unstable/main amd64 gpgconf amd64 2.4.8-4 [129 kB]
Get:19 http://localhost:3142/debian unstable/main amd64 libksba8 amd64 1.6.7-2+b1 [136 kB]
Get:20 http://localhost:3142/debian unstable/main amd64 libnpth0t64 amd64 1.8-3 [23.2 kB]
Get:21 http://localhost:3142/debian unstable/main amd64 gpg amd64 2.4.8-4 [639 kB]
Get:22 http://localhost:3142/debian unstable/main amd64 iso-codes all 4.19.0-1 [3327 kB]
Get:23 http://localhost:3142/debian unstable/main amd64 libaliased-perl all 0.34-3 [13.5 kB]
Get:24 http://localhost:3142/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.43 [68.4 kB]
Get:25 http://localhost:3142/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b2 [10.6 kB]
Get:26 http://localhost:3142/debian unstable/main amd64 libdynaloader-functions-perl all 0.004-2 [12.2 kB]
Get:27 http://localhost:3142/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.009-2 [15.6 kB]
Get:28 http://localhost:3142/debian unstable/main amd64 libparams-classify-perl amd64 0.015-2+b4 [22.5 kB]
Get:29 http://localhost:3142/debian unstable/main amd64 libmodule-runtime-perl all 0.018-1 [17.8 kB]
Get:30 http://localhost:3142/debian unstable/main amd64 libtry-tiny-perl all 0.32-1 [22.9 kB]
Get:31 http://localhost:3142/debian unstable/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB]
Get:32 http://localhost:3142/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B]
Get:33 http://localhost:3142/debian unstable/main amd64 libvariable-magic-perl amd64 0.64-1+b1 [44.9 kB]
Get:34 http://localhost:3142/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.28-2 [17.6 kB]
Get:35 http://localhost:3142/debian unstable/main amd64 libberkeleydb-perl amd64 0.66-2 [122 kB]
Get:36 http://localhost:3142/debian unstable/main amd64 libcapture-tiny-perl all 0.50-1 [24.6 kB]
Get:37 http://localhost:3142/debian unstable/main amd64 libhtml-tagset-perl all 3.24-1 [14.7 kB]
Get:38 http://localhost:3142/debian unstable/main amd64 liburi-perl all 5.34-2 [111 kB]
Get:39 http://localhost:3142/debian unstable/main amd64 libhtml-parser-perl amd64 3.83-1+b2 [99.7 kB]
Get:40 http://localhost:3142/debian unstable/main amd64 libcgi-pm-perl all 4.71-1 [217 kB]
Get:41 http://localhost:3142/debian unstable/main amd64 libclass-data-inheritable-perl all 0.10-1 [8632 B]
Get:42 http://localhost:3142/debian unstable/main amd64 libclass-inspector-perl all 1.36-3 [17.5 kB]
Get:43 http://localhost:3142/debian unstable/main amd64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB]
Get:44 http://localhost:3142/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-4+b5 [36.1 kB]
Get:45 http://localhost:3142/debian unstable/main amd64 libclone-perl amd64 0.47-1+b1 [13.9 kB]
Get:46 http://localhost:3142/debian unstable/main amd64 libconfig-tiny-perl all 2.30-1 [18.9 kB]
Get:47 http://localhost:3142/debian unstable/main amd64 libparams-util-perl amd64 1.102-3+b1 [24.4 kB]
Get:48 http://localhost:3142/debian unstable/main amd64 libsub-install-perl all 0.929-1 [10.5 kB]
Get:49 http://localhost:3142/debian unstable/main amd64 libdata-optlist-perl all 0.114-1 [10.6 kB]
Get:50 http://localhost:3142/debian unstable/main amd64 libsub-exporter-perl all 0.990-1 [50.6 kB]
Get:51 http://localhost:3142/debian unstable/main amd64 libconst-fast-perl all 0.014-2 [8792 B]
Get:52 http://localhost:3142/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.40-1 [132 kB]
Get:53 http://localhost:3142/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB]
Get:54 http://localhost:3142/debian unstable/main amd64 libexception-class-perl all 1.45-1 [34.6 kB]
Get:55 http://localhost:3142/debian unstable/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB]
Get:56 http://localhost:3142/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB]
Get:57 http://localhost:3142/debian unstable/main amd64 libdata-dpath-perl all 0.60-1 [41.8 kB]
Get:58 http://localhost:3142/debian unstable/main amd64 libdata-messagepack-perl amd64 1.02-3 [32.6 kB]
Get:59 http://localhost:3142/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-4 [31.5 kB]
Get:60 http://localhost:3142/debian unstable/main amd64 libdata-validate-domain-perl all 0.15-1 [11.9 kB]
Get:61 http://localhost:3142/debian unstable/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB]
Get:62 http://localhost:3142/debian unstable/main amd64 libnet-netmask-perl all 2.0003-1 [28.5 kB]
Get:63 http://localhost:3142/debian unstable/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2+b5 [98.1 kB]
Get:64 http://localhost:3142/debian unstable/main amd64 libdata-validate-ip-perl all 0.31-1 [20.6 kB]
Get:65 http://localhost:3142/debian unstable/main amd64 libdata-validate-uri-perl all 0.07-3 [11.0 kB]
Get:66 http://localhost:3142/debian unstable/main amd64 libdevel-size-perl amd64 0.85-1 [24.0 kB]
Get:67 http://localhost:3142/debian unstable/main amd64 libemail-address-xs-perl amd64 1.05-1+b4 [29.4 kB]
Get:68 http://localhost:3142/debian unstable/main amd64 libencode-locale-perl all 1.05-3 [12.9 kB]
Get:69 http://localhost:3142/debian unstable/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB]
Get:70 http://localhost:3142/debian unstable/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB]
Get:71 http://localhost:3142/debian unstable/main amd64 libnumber-compare-perl all 0.03-3 [6332 B]
Get:72 http://localhost:3142/debian unstable/main amd64 libtext-glob-perl all 0.11-3 [7676 B]
Get:73 http://localhost:3142/debian unstable/main amd64 libfile-find-rule-perl all 0.35-1 [25.9 kB]
Get:74 http://localhost:3142/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB]
Get:75 http://localhost:3142/debian unstable/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB]
Get:76 http://localhost:3142/debian unstable/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB]
Get:77 http://localhost:3142/debian unstable/main amd64 libfile-sharedir-perl all 1.118-3 [16.0 kB]
Get:78 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB]
Get:79 http://localhost:3142/debian unstable/main amd64 libfont-ttf-perl all 1.06-2 [318 kB]
Get:80 http://localhost:3142/debian unstable/main amd64 libio-html-perl all 1.004-3 [16.2 kB]
Get:81 http://localhost:3142/debian unstable/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB]
Get:82 http://localhost:3142/debian unstable/main amd64 libhttp-message-perl all 7.01-1 [80.0 kB]
Get:83 http://localhost:3142/debian unstable/main amd64 libhtml-form-perl all 6.13-1 [32.6 kB]
Get:84 http://localhost:3142/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB]
Get:85 http://localhost:3142/debian unstable/main amd64 libhtml-tree-perl all 5.07-3 [211 kB]
Get:86 http://localhost:3142/debian unstable/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB]
Get:87 http://localhost:3142/debian unstable/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB]
Get:88 http://localhost:3142/debian unstable/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B]
Get:89 http://localhost:3142/debian unstable/main amd64 libnet-ssleay-perl amd64 1.94-3 [339 kB]
Get:90 http://localhost:3142/debian unstable/main amd64 libio-socket-ssl-perl all 2.095-1 [226 kB]
Get:91 http://localhost:3142/debian unstable/main amd64 libnet-http-perl all 6.24-1 [23.2 kB]
Get:92 http://localhost:3142/debian unstable/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB]
Get:93 http://localhost:3142/debian unstable/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB]
Get:94 http://localhost:3142/debian unstable/main amd64 libwww-perl all 6.81-1 [186 kB]
Get:95 http://localhost:3142/debian unstable/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB]
Get:96 http://localhost:3142/debian unstable/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB]
Get:97 http://localhost:3142/debian unstable/main amd64 libio-interactive-perl all 1.027-1 [11.8 kB]
Get:98 http://localhost:3142/debian unstable/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB]
Get:99 http://localhost:3142/debian unstable/main amd64 libjson-maybexs-perl all 1.004008-1 [12.9 kB]
Get:100 http://localhost:3142/debian unstable/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB]
Get:101 http://localhost:3142/debian unstable/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB]
Get:102 http://localhost:3142/debian unstable/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB]
Get:103 http://localhost:3142/debian unstable/main amd64 liblz1 amd64 1.15-3 [39.0 kB]
Get:104 http://localhost:3142/debian unstable/main amd64 liblzo2-2 amd64 2.10-3+b1 [55.1 kB]
Get:105 http://localhost:3142/debian unstable/main amd64 libmarkdown2 amd64 2.2.7-2.1 [36.0 kB]
Get:106 http://localhost:3142/debian unstable/main amd64 libmldbm-perl all 2.05-4 [16.8 kB]
Get:107 http://localhost:3142/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB]
Get:108 http://localhost:3142/debian unstable/main amd64 libsub-quote-perl all 2.006009-1 [21.3 kB]
Get:109 http://localhost:3142/debian unstable/main amd64 libmoo-perl all 2.005005-1 [58.0 kB]
Get:110 http://localhost:3142/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:111 http://localhost:3142/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B]
Get:112 http://localhost:3142/debian unstable/main amd64 libmouse-perl amd64 2.6.0-1 [143 kB]
Get:113 http://localhost:3142/debian unstable/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB]
Get:114 http://localhost:3142/debian unstable/main amd64 libsub-identify-perl amd64 0.14-3+b3 [11.3 kB]
Get:115 http://localhost:3142/debian unstable/main amd64 libsub-name-perl amd64 0.28-1 [12.2 kB]
Get:116 http://localhost:3142/debian unstable/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB]
Get:117 http://localhost:3142/debian unstable/main amd64 libpath-tiny-perl all 0.148-1 [56.7 kB]
Get:118 http://localhost:3142/debian unstable/main amd64 libperlio-gzip-perl amd64 0.20-1+b4 [17.5 kB]
Get:119 http://localhost:3142/debian unstable/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b3 [11.4 kB]
Get:120 http://localhost:3142/debian unstable/main amd64 libproc-processtable-perl amd64 0.637-1 [42.1 kB]
Get:121 http://localhost:3142/debian unstable/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB]
Get:122 http://localhost:3142/debian unstable/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b3 [100 kB]
Get:123 http://localhost:3142/debian unstable/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b3 [104 kB]
Get:124 http://localhost:3142/debian unstable/main amd64 libsort-versions-perl all 1.62-3 [8928 B]
Get:125 http://localhost:3142/debian unstable/main amd64 libxs-parse-keyword-perl amd64 0.49-1 [66.1 kB]
Get:126 http://localhost:3142/debian unstable/main amd64 libsyntax-keyword-try-perl amd64 0.31-1 [27.4 kB]
Get:127 http://localhost:3142/debian unstable/main amd64 libterm-readkey-perl amd64 2.38-2+b4 [24.6 kB]
Get:128 http://localhost:3142/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b4 [8720 B]
Get:129 http://localhost:3142/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.18-1 [13.1 kB]
Get:130 http://localhost:3142/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.9-2+b1 [174 kB]
Get:131 http://localhost:3142/debian unstable/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB]
Get:132 http://localhost:3142/debian unstable/main amd64 libtime-moment-perl amd64 0.44-2+b4 [73.2 kB]
Get:133 http://localhost:3142/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-3 [20.1 kB]
Get:134 http://localhost:3142/debian unstable/main amd64 libwww-mechanize-perl all 2.20-1 [117 kB]
Get:135 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB]
Get:136 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB]
Get:137 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB]
Get:138 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-7 [314 kB]
Get:139 http://localhost:3142/debian unstable/main amd64 libyaml-0-2 amd64 0.2.5-2 [52.5 kB]
Get:140 http://localhost:3142/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.904.0+ds-1 [46.9 kB]
Get:141 http://localhost:3142/debian unstable/main amd64 plzip amd64 1.12-4 [65.0 kB]
Get:142 http://localhost:3142/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB]
Get:143 http://localhost:3142/debian unstable/main amd64 patchutils amd64 0.4.3-1 [79.1 kB]
Get:144 http://localhost:3142/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB]
Get:145 http://localhost:3142/debian unstable/main amd64 unzip amd64 6.0-29 [173 kB]
Get:146 http://localhost:3142/debian unstable/main amd64 lintian all 2.127.0 [1066 kB]
Preconfiguring packages ...
Fetched 17.0 MB in 0s (121 MB/s)
Selecting previously unselected package openssl.
(Reading database ... 28569 files and directories currently installed.)
Preparing to unpack .../000-openssl_3.5.4-1_amd64.deb ...
Unpacking openssl (3.5.4-1) ...
Selecting previously unselected package ca-certificates.
Preparing to unpack .../001-ca-certificates_20250419_all.deb ...
Unpacking ca-certificates (20250419) ...
Selecting previously unselected package libtext-charwidth-perl:amd64.
Preparing to unpack .../002-libtext-charwidth-perl_0.04-11+b4_amd64.deb ...
Unpacking libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Selecting previously unselected package libtext-wrapi18n-perl.
Preparing to unpack .../003-libtext-wrapi18n-perl_0.06-10_all.deb ...
Unpacking libtext-wrapi18n-perl (0.06-10) ...
Selecting previously unselected package ucf.
Preparing to unpack .../004-ucf_3.0052_all.deb ...
Moving old data out of the way
Unpacking ucf (3.0052) ...
Selecting previously unselected package libglib2.0-0t64:amd64.
Preparing to unpack .../005-libglib2.0-0t64_2.86.2-1_amd64.deb ...
Unpacking libglib2.0-0t64:amd64 (2.86.2-1) ...
Selecting previously unselected package shared-mime-info.
Preparing to unpack .../006-shared-mime-info_2.4-5+b3_amd64.deb ...
Unpacking shared-mime-info (2.4-5+b3) ...
Selecting previously unselected package libngtcp2-crypto-gnutls8:amd64.
Preparing to unpack .../007-libngtcp2-crypto-gnutls8_1.16.0-1_amd64.deb ...
Unpacking libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ...
Selecting previously unselected package libcurl3t64-gnutls:amd64.
Preparing to unpack .../008-libcurl3t64-gnutls_8.17.0-3_amd64.deb ...
Unpacking libcurl3t64-gnutls:amd64 (8.17.0-3) ...
Selecting previously unselected package libfyaml0:amd64.
Preparing to unpack .../009-libfyaml0_0.9-2_amd64.deb ...
Unpacking libfyaml0:amd64 (0.9-2) ...
Selecting previously unselected package libstemmer0d:amd64.
Preparing to unpack .../010-libstemmer0d_3.0.1-1_amd64.deb ...
Unpacking libstemmer0d:amd64 (3.0.1-1) ...
Selecting previously unselected package libxmlb2:amd64.
Preparing to unpack .../011-libxmlb2_0.3.24-2_amd64.deb ...
Unpacking libxmlb2:amd64 (0.3.24-2) ...
Selecting previously unselected package libappstream5:amd64.
Preparing to unpack .../012-libappstream5_1.1.1-1_amd64.deb ...
Unpacking libappstream5:amd64 (1.1.1-1) ...
Selecting previously unselected package appstream.
Preparing to unpack .../013-appstream_1.1.1-1_amd64.deb ...
Unpacking appstream (1.1.1-1) ...
Selecting previously unselected package diffstat.
Preparing to unpack .../014-diffstat_1.68-1_amd64.deb ...
Unpacking diffstat (1.68-1) ...
Selecting previously unselected package libassuan9:amd64.
Preparing to unpack .../015-libassuan9_3.0.2-2_amd64.deb ...
Unpacking libassuan9:amd64 (3.0.2-2) ...
Selecting previously unselected package gpgconf.
Preparing to unpack .../016-gpgconf_2.4.8-4_amd64.deb ...
Unpacking gpgconf (2.4.8-4) ...
Selecting previously unselected package libksba8:amd64.
Preparing to unpack .../017-libksba8_1.6.7-2+b1_amd64.deb ...
Unpacking libksba8:amd64 (1.6.7-2+b1) ...
Selecting previously unselected package libnpth0t64:amd64.
Preparing to unpack .../018-libnpth0t64_1.8-3_amd64.deb ...
Unpacking libnpth0t64:amd64 (1.8-3) ...
Selecting previously unselected package gpg.
Preparing to unpack .../019-gpg_2.4.8-4_amd64.deb ...
Unpacking gpg (2.4.8-4) ...
Selecting previously unselected package iso-codes.
Preparing to unpack .../020-iso-codes_4.19.0-1_all.deb ...
Unpacking iso-codes (4.19.0-1) ...
Selecting previously unselected package libaliased-perl.
Preparing to unpack .../021-libaliased-perl_0.34-3_all.deb ...
Unpacking libaliased-perl (0.34-3) ...
Selecting previously unselected package libapt-pkg-perl.
Preparing to unpack .../022-libapt-pkg-perl_0.1.43_amd64.deb ...
Unpacking libapt-pkg-perl (0.1.43) ...
Selecting previously unselected package libb-hooks-op-check-perl:amd64.
Preparing to unpack .../023-libb-hooks-op-check-perl_0.22-3+b2_amd64.deb ...
Unpacking libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Selecting previously unselected package libdynaloader-functions-perl.
Preparing to unpack .../024-libdynaloader-functions-perl_0.004-2_all.deb ...
Unpacking libdynaloader-functions-perl (0.004-2) ...
Selecting previously unselected package libdevel-callchecker-perl:amd64.
Preparing to unpack .../025-libdevel-callchecker-perl_0.009-2_amd64.deb ...
Unpacking libdevel-callchecker-perl:amd64 (0.009-2) ...
Selecting previously unselected package libparams-classify-perl:amd64.
Preparing to unpack .../026-libparams-classify-perl_0.015-2+b4_amd64.deb ...
Unpacking libparams-classify-perl:amd64 (0.015-2+b4) ...
Selecting previously unselected package libmodule-runtime-perl.
Preparing to unpack .../027-libmodule-runtime-perl_0.018-1_all.deb ...
Unpacking libmodule-runtime-perl (0.018-1) ...
Selecting previously unselected package libtry-tiny-perl.
Preparing to unpack .../028-libtry-tiny-perl_0.32-1_all.deb ...
Unpacking libtry-tiny-perl (0.32-1) ...
Selecting previously unselected package libmodule-implementation-perl.
Preparing to unpack .../029-libmodule-implementation-perl_0.09-2_all.deb ...
Unpacking libmodule-implementation-perl (0.09-2) ...
Selecting previously unselected package libsub-exporter-progressive-perl.
Preparing to unpack .../030-libsub-exporter-progressive-perl_0.001013-3_all.deb ...
Unpacking libsub-exporter-progressive-perl (0.001013-3) ...
Selecting previously unselected package libvariable-magic-perl.
Preparing to unpack .../031-libvariable-magic-perl_0.64-1+b1_amd64.deb ...
Unpacking libvariable-magic-perl (0.64-1+b1) ...
Selecting previously unselected package libb-hooks-endofscope-perl.
Preparing to unpack .../032-libb-hooks-endofscope-perl_0.28-2_all.deb ...
Unpacking libb-hooks-endofscope-perl (0.28-2) ...
Selecting previously unselected package libberkeleydb-perl:amd64.
Preparing to unpack .../033-libberkeleydb-perl_0.66-2_amd64.deb ...
Unpacking libberkeleydb-perl:amd64 (0.66-2) ...
Selecting previously unselected package libcapture-tiny-perl.
Preparing to unpack .../034-libcapture-tiny-perl_0.50-1_all.deb ...
Unpacking libcapture-tiny-perl (0.50-1) ...
Selecting previously unselected package libhtml-tagset-perl.
Preparing to unpack .../035-libhtml-tagset-perl_3.24-1_all.deb ...
Unpacking libhtml-tagset-perl (3.24-1) ...
Selecting previously unselected package liburi-perl.
Preparing to unpack .../036-liburi-perl_5.34-2_all.deb ...
Unpacking liburi-perl (5.34-2) ...
Selecting previously unselected package libhtml-parser-perl:amd64.
Preparing to unpack .../037-libhtml-parser-perl_3.83-1+b2_amd64.deb ...
Unpacking libhtml-parser-perl:amd64 (3.83-1+b2) ...
Selecting previously unselected package libcgi-pm-perl.
Preparing to unpack .../038-libcgi-pm-perl_4.71-1_all.deb ...
Unpacking libcgi-pm-perl (4.71-1) ...
Selecting previously unselected package libclass-data-inheritable-perl.
Preparing to unpack .../039-libclass-data-inheritable-perl_0.10-1_all.deb ...
Unpacking libclass-data-inheritable-perl (0.10-1) ...
Selecting previously unselected package libclass-inspector-perl.
Preparing to unpack .../040-libclass-inspector-perl_1.36-3_all.deb ...
Unpacking libclass-inspector-perl (1.36-3) ...
Selecting previously unselected package libclass-method-modifiers-perl.
Preparing to unpack .../041-libclass-method-modifiers-perl_2.15-1_all.deb ...
Unpacking libclass-method-modifiers-perl (2.15-1) ...
Selecting previously unselected package libclass-xsaccessor-perl.
Preparing to unpack .../042-libclass-xsaccessor-perl_1.19-4+b5_amd64.deb ...
Unpacking libclass-xsaccessor-perl (1.19-4+b5) ...
Selecting previously unselected package libclone-perl:amd64.
Preparing to unpack .../043-libclone-perl_0.47-1+b1_amd64.deb ...
Unpacking libclone-perl:amd64 (0.47-1+b1) ...
Selecting previously unselected package libconfig-tiny-perl.
Preparing to unpack .../044-libconfig-tiny-perl_2.30-1_all.deb ...
Unpacking libconfig-tiny-perl (2.30-1) ...
Selecting previously unselected package libparams-util-perl.
Preparing to unpack .../045-libparams-util-perl_1.102-3+b1_amd64.deb ...
Unpacking libparams-util-perl (1.102-3+b1) ...
Selecting previously unselected package libsub-install-perl.
Preparing to unpack .../046-libsub-install-perl_0.929-1_all.deb ...
Unpacking libsub-install-perl (0.929-1) ...
Selecting previously unselected package libdata-optlist-perl.
Preparing to unpack .../047-libdata-optlist-perl_0.114-1_all.deb ...
Unpacking libdata-optlist-perl (0.114-1) ...
Selecting previously unselected package libsub-exporter-perl.
Preparing to unpack .../048-libsub-exporter-perl_0.990-1_all.deb ...
Unpacking libsub-exporter-perl (0.990-1) ...
Selecting previously unselected package libconst-fast-perl.
Preparing to unpack .../049-libconst-fast-perl_0.014-2_all.deb ...
Unpacking libconst-fast-perl (0.014-2) ...
Selecting previously unselected package libcpanel-json-xs-perl:amd64.
Preparing to unpack .../050-libcpanel-json-xs-perl_4.40-1_amd64.deb ...
Unpacking libcpanel-json-xs-perl:amd64 (4.40-1) ...
Selecting previously unselected package libdevel-stacktrace-perl.
Preparing to unpack .../051-libdevel-stacktrace-perl_2.0500-1_all.deb ...
Unpacking libdevel-stacktrace-perl (2.0500-1) ...
Selecting previously unselected package libexception-class-perl.
Preparing to unpack .../052-libexception-class-perl_1.45-1_all.deb ...
Unpacking libexception-class-perl (1.45-1) ...
Selecting previously unselected package libiterator-perl.
Preparing to unpack .../053-libiterator-perl_0.03+ds1-2_all.deb ...
Unpacking libiterator-perl (0.03+ds1-2) ...
Selecting previously unselected package libiterator-util-perl.
Preparing to unpack .../054-libiterator-util-perl_0.02+ds1-2_all.deb ...
Unpacking libiterator-util-perl (0.02+ds1-2) ...
Selecting previously unselected package libdata-dpath-perl.
Preparing to unpack .../055-libdata-dpath-perl_0.60-1_all.deb ...
Unpacking libdata-dpath-perl (0.60-1) ...
Selecting previously unselected package libdata-messagepack-perl.
Preparing to unpack .../056-libdata-messagepack-perl_1.02-3_amd64.deb ...
Unpacking libdata-messagepack-perl (1.02-3) ...
Selecting previously unselected package libnet-domain-tld-perl.
Preparing to unpack .../057-libnet-domain-tld-perl_1.75-4_all.deb ...
Unpacking libnet-domain-tld-perl (1.75-4) ...
Selecting previously unselected package libdata-validate-domain-perl.
Preparing to unpack .../058-libdata-validate-domain-perl_0.15-1_all.deb ...
Unpacking libdata-validate-domain-perl (0.15-1) ...
Selecting previously unselected package libnet-ipv6addr-perl.
Preparing to unpack .../059-libnet-ipv6addr-perl_1.02-1_all.deb ...
Unpacking libnet-ipv6addr-perl (1.02-1) ...
Selecting previously unselected package libnet-netmask-perl.
Preparing to unpack .../060-libnet-netmask-perl_2.0003-1_all.deb ...
Unpacking libnet-netmask-perl (2.0003-1) ...
Selecting previously unselected package libnetaddr-ip-perl.
Preparing to unpack .../061-libnetaddr-ip-perl_4.079+dfsg-2+b5_amd64.deb ...
Unpacking libnetaddr-ip-perl (4.079+dfsg-2+b5) ...
Selecting previously unselected package libdata-validate-ip-perl.
Preparing to unpack .../062-libdata-validate-ip-perl_0.31-1_all.deb ...
Unpacking libdata-validate-ip-perl (0.31-1) ...
Selecting previously unselected package libdata-validate-uri-perl.
Preparing to unpack .../063-libdata-validate-uri-perl_0.07-3_all.deb ...
Unpacking libdata-validate-uri-perl (0.07-3) ...
Selecting previously unselected package libdevel-size-perl.
Preparing to unpack .../064-libdevel-size-perl_0.85-1_amd64.deb ...
Unpacking libdevel-size-perl (0.85-1) ...
Selecting previously unselected package libemail-address-xs-perl.
Preparing to unpack .../065-libemail-address-xs-perl_1.05-1+b4_amd64.deb ...
Unpacking libemail-address-xs-perl (1.05-1+b4) ...
Selecting previously unselected package libencode-locale-perl.
Preparing to unpack .../066-libencode-locale-perl_1.05-3_all.deb ...
Unpacking libencode-locale-perl (1.05-3) ...
Selecting previously unselected package libipc-system-simple-perl.
Preparing to unpack .../067-libipc-system-simple-perl_1.30-2_all.deb ...
Unpacking libipc-system-simple-perl (1.30-2) ...
Selecting previously unselected package libfile-basedir-perl.
Preparing to unpack .../068-libfile-basedir-perl_0.09-2_all.deb ...
Unpacking libfile-basedir-perl (0.09-2) ...
Selecting previously unselected package libnumber-compare-perl.
Preparing to unpack .../069-libnumber-compare-perl_0.03-3_all.deb ...
Unpacking libnumber-compare-perl (0.03-3) ...
Selecting previously unselected package libtext-glob-perl.
Preparing to unpack .../070-libtext-glob-perl_0.11-3_all.deb ...
Unpacking libtext-glob-perl (0.11-3) ...
Selecting previously unselected package libfile-find-rule-perl.
Preparing to unpack .../071-libfile-find-rule-perl_0.35-1_all.deb ...
Unpacking libfile-find-rule-perl (0.35-1) ...
Selecting previously unselected package libtimedate-perl.
Preparing to unpack .../072-libtimedate-perl_2.3300-2_all.deb ...
Unpacking libtimedate-perl (2.3300-2) ...
Selecting previously unselected package libhttp-date-perl.
Preparing to unpack .../073-libhttp-date-perl_6.06-1_all.deb ...
Unpacking libhttp-date-perl (6.06-1) ...
Selecting previously unselected package libfile-listing-perl.
Preparing to unpack .../074-libfile-listing-perl_6.16-1_all.deb ...
Unpacking libfile-listing-perl (6.16-1) ...
Selecting previously unselected package libfile-sharedir-perl.
Preparing to unpack .../075-libfile-sharedir-perl_1.118-3_all.deb ...
Unpacking libfile-sharedir-perl (1.118-3) ...
Selecting previously unselected package libio-string-perl.
Preparing to unpack .../076-libio-string-perl_1.08-4_all.deb ...
Unpacking libio-string-perl (1.08-4) ...
Selecting previously unselected package libfont-ttf-perl.
Preparing to unpack .../077-libfont-ttf-perl_1.06-2_all.deb ...
Unpacking libfont-ttf-perl (1.06-2) ...
Selecting previously unselected package libio-html-perl.
Preparing to unpack .../078-libio-html-perl_1.004-3_all.deb ...
Unpacking libio-html-perl (1.004-3) ...
Selecting previously unselected package liblwp-mediatypes-perl.
Preparing to unpack .../079-liblwp-mediatypes-perl_6.04-2_all.deb ...
Unpacking liblwp-mediatypes-perl (6.04-2) ...
Selecting previously unselected package libhttp-message-perl.
Preparing to unpack .../080-libhttp-message-perl_7.01-1_all.deb ...
Unpacking libhttp-message-perl (7.01-1) ...
Selecting previously unselected package libhtml-form-perl.
Preparing to unpack .../081-libhtml-form-perl_6.13-1_all.deb ...
Unpacking libhtml-form-perl (6.13-1) ...
Selecting previously unselected package libhtml-html5-entities-perl.
Preparing to unpack .../082-libhtml-html5-entities-perl_0.004-3_all.deb ...
Unpacking libhtml-html5-entities-perl (0.004-3) ...
Selecting previously unselected package libhtml-tree-perl.
Preparing to unpack .../083-libhtml-tree-perl_5.07-3_all.deb ...
Unpacking libhtml-tree-perl (5.07-3) ...
Selecting previously unselected package libhttp-cookies-perl.
Preparing to unpack .../084-libhttp-cookies-perl_6.11-1_all.deb ...
Unpacking libhttp-cookies-perl (6.11-1) ...
Selecting previously unselected package libhttp-negotiate-perl.
Preparing to unpack .../085-libhttp-negotiate-perl_6.01-2_all.deb ...
Unpacking libhttp-negotiate-perl (6.01-2) ...
Selecting previously unselected package perl-openssl-defaults:amd64.
Preparing to unpack .../086-perl-openssl-defaults_7+b2_amd64.deb ...
Unpacking perl-openssl-defaults:amd64 (7+b2) ...
Selecting previously unselected package libnet-ssleay-perl:amd64.
Preparing to unpack .../087-libnet-ssleay-perl_1.94-3_amd64.deb ...
Unpacking libnet-ssleay-perl:amd64 (1.94-3) ...
Selecting previously unselected package libio-socket-ssl-perl.
Preparing to unpack .../088-libio-socket-ssl-perl_2.095-1_all.deb ...
Unpacking libio-socket-ssl-perl (2.095-1) ...
Selecting previously unselected package libnet-http-perl.
Preparing to unpack .../089-libnet-http-perl_6.24-1_all.deb ...
Unpacking libnet-http-perl (6.24-1) ...
Selecting previously unselected package liblwp-protocol-https-perl.
Preparing to unpack .../090-liblwp-protocol-https-perl_6.14-1_all.deb ...
Unpacking liblwp-protocol-https-perl (6.14-1) ...
Selecting previously unselected package libwww-robotrules-perl.
Preparing to unpack .../091-libwww-robotrules-perl_6.02-1_all.deb ...
Unpacking libwww-robotrules-perl (6.02-1) ...
Selecting previously unselected package libwww-perl.
Preparing to unpack .../092-libwww-perl_6.81-1_all.deb ...
Unpacking libwww-perl (6.81-1) ...
Selecting previously unselected package libhtml-tokeparser-simple-perl.
Preparing to unpack .../093-libhtml-tokeparser-simple-perl_3.16-4_all.deb ...
Unpacking libhtml-tokeparser-simple-perl (3.16-4) ...
Selecting previously unselected package libimport-into-perl.
Preparing to unpack .../094-libimport-into-perl_1.002005-2_all.deb ...
Unpacking libimport-into-perl (1.002005-2) ...
Selecting previously unselected package libio-interactive-perl.
Preparing to unpack .../095-libio-interactive-perl_1.027-1_all.deb ...
Unpacking libio-interactive-perl (1.027-1) ...
Selecting previously unselected package libipc-run3-perl.
Preparing to unpack .../096-libipc-run3-perl_0.049-1_all.deb ...
Unpacking libipc-run3-perl (0.049-1) ...
Selecting previously unselected package libjson-maybexs-perl.
Preparing to unpack .../097-libjson-maybexs-perl_1.004008-1_all.deb ...
Unpacking libjson-maybexs-perl (1.004008-1) ...
Selecting previously unselected package liblist-compare-perl.
Preparing to unpack .../098-liblist-compare-perl_0.55-2_all.deb ...
Unpacking liblist-compare-perl (0.55-2) ...
Selecting previously unselected package liblist-someutils-perl.
Preparing to unpack .../099-liblist-someutils-perl_0.59-1_all.deb ...
Unpacking liblist-someutils-perl (0.59-1) ...
Selecting previously unselected package liblist-utilsby-perl.
Preparing to unpack .../100-liblist-utilsby-perl_0.12-2_all.deb ...
Unpacking liblist-utilsby-perl (0.12-2) ...
Selecting previously unselected package liblz1:amd64.
Preparing to unpack .../101-liblz1_1.15-3_amd64.deb ...
Unpacking liblz1:amd64 (1.15-3) ...
Selecting previously unselected package liblzo2-2:amd64.
Preparing to unpack .../102-liblzo2-2_2.10-3+b1_amd64.deb ...
Unpacking liblzo2-2:amd64 (2.10-3+b1) ...
Selecting previously unselected package libmarkdown2:amd64.
Preparing to unpack .../103-libmarkdown2_2.2.7-2.1_amd64.deb ...
Unpacking libmarkdown2:amd64 (2.2.7-2.1) ...
Selecting previously unselected package libmldbm-perl.
Preparing to unpack .../104-libmldbm-perl_2.05-4_all.deb ...
Unpacking libmldbm-perl (2.05-4) ...
Selecting previously unselected package librole-tiny-perl.
Preparing to unpack .../105-librole-tiny-perl_2.002004-1_all.deb ...
Unpacking librole-tiny-perl (2.002004-1) ...
Selecting previously unselected package libsub-quote-perl.
Preparing to unpack .../106-libsub-quote-perl_2.006009-1_all.deb ...
Unpacking libsub-quote-perl (2.006009-1) ...
Selecting previously unselected package libmoo-perl.
Preparing to unpack .../107-libmoo-perl_2.005005-1_all.deb ...
Unpacking libmoo-perl (2.005005-1) ...
Selecting previously unselected package libstrictures-perl.
Preparing to unpack .../108-libstrictures-perl_2.000006-1_all.deb ...
Unpacking libstrictures-perl (2.000006-1) ...
Selecting previously unselected package libmoox-aliases-perl.
Preparing to unpack .../109-libmoox-aliases-perl_0.001006-2_all.deb ...
Unpacking libmoox-aliases-perl (0.001006-2) ...
Selecting previously unselected package libmouse-perl:amd64.
Preparing to unpack .../110-libmouse-perl_2.6.0-1_amd64.deb ...
Unpacking libmouse-perl:amd64 (2.6.0-1) ...
Selecting previously unselected package libpackage-stash-perl.
Preparing to unpack .../111-libpackage-stash-perl_0.40-1_all.deb ...
Unpacking libpackage-stash-perl (0.40-1) ...
Selecting previously unselected package libsub-identify-perl.
Preparing to unpack .../112-libsub-identify-perl_0.14-3+b3_amd64.deb ...
Unpacking libsub-identify-perl (0.14-3+b3) ...
Selecting previously unselected package libsub-name-perl:amd64.
Preparing to unpack .../113-libsub-name-perl_0.28-1_amd64.deb ...
Unpacking libsub-name-perl:amd64 (0.28-1) ...
Selecting previously unselected package libnamespace-clean-perl.
Preparing to unpack .../114-libnamespace-clean-perl_0.27-2_all.deb ...
Unpacking libnamespace-clean-perl (0.27-2) ...
Selecting previously unselected package libpath-tiny-perl.
Preparing to unpack .../115-libpath-tiny-perl_0.148-1_all.deb ...
Unpacking libpath-tiny-perl (0.148-1) ...
Selecting previously unselected package libperlio-gzip-perl.
Preparing to unpack .../116-libperlio-gzip-perl_0.20-1+b4_amd64.deb ...
Unpacking libperlio-gzip-perl (0.20-1+b4) ...
Selecting previously unselected package libperlio-utf8-strict-perl.
Preparing to unpack .../117-libperlio-utf8-strict-perl_0.010-1+b3_amd64.deb ...
Unpacking libperlio-utf8-strict-perl (0.010-1+b3) ...
Selecting previously unselected package libproc-processtable-perl:amd64.
Preparing to unpack .../118-libproc-processtable-perl_0.637-1_amd64.deb ...
Unpacking libproc-processtable-perl:amd64 (0.637-1) ...
Selecting previously unselected package libregexp-wildcards-perl.
Preparing to unpack .../119-libregexp-wildcards-perl_1.05-3_all.deb ...
Unpacking libregexp-wildcards-perl (1.05-3) ...
Selecting previously unselected package libsereal-decoder-perl.
Preparing to unpack .../120-libsereal-decoder-perl_5.004+ds-1+b3_amd64.deb ...
Unpacking libsereal-decoder-perl (5.004+ds-1+b3) ...
Selecting previously unselected package libsereal-encoder-perl.
Preparing to unpack .../121-libsereal-encoder-perl_5.004+ds-1+b3_amd64.deb ...
Unpacking libsereal-encoder-perl (5.004+ds-1+b3) ...
Selecting previously unselected package libsort-versions-perl.
Preparing to unpack .../122-libsort-versions-perl_1.62-3_all.deb ...
Unpacking libsort-versions-perl (1.62-3) ...
Selecting previously unselected package libxs-parse-keyword-perl.
Preparing to unpack .../123-libxs-parse-keyword-perl_0.49-1_amd64.deb ...
Unpacking libxs-parse-keyword-perl (0.49-1) ...
Selecting previously unselected package libsyntax-keyword-try-perl.
Preparing to unpack .../124-libsyntax-keyword-try-perl_0.31-1_amd64.deb ...
Unpacking libsyntax-keyword-try-perl (0.31-1) ...
Selecting previously unselected package libterm-readkey-perl.
Preparing to unpack .../125-libterm-readkey-perl_2.38-2+b4_amd64.deb ...
Unpacking libterm-readkey-perl (2.38-2+b4) ...
Selecting previously unselected package libtext-levenshteinxs-perl.
Preparing to unpack .../126-libtext-levenshteinxs-perl_0.03-5+b4_amd64.deb ...
Unpacking libtext-levenshteinxs-perl (0.03-5+b4) ...
Selecting previously unselected package libtext-markdown-discount-perl.
Preparing to unpack .../127-libtext-markdown-discount-perl_0.18-1_amd64.deb ...
Unpacking libtext-markdown-discount-perl (0.18-1) ...
Selecting previously unselected package libtext-xslate-perl:amd64.
Preparing to unpack .../128-libtext-xslate-perl_3.5.9-2+b1_amd64.deb ...
Unpacking libtext-xslate-perl:amd64 (3.5.9-2+b1) ...
Selecting previously unselected package libtime-duration-perl.
Preparing to unpack .../129-libtime-duration-perl_1.21-2_all.deb ...
Unpacking libtime-duration-perl (1.21-2) ...
Selecting previously unselected package libtime-moment-perl.
Preparing to unpack .../130-libtime-moment-perl_0.44-2+b4_amd64.deb ...
Unpacking libtime-moment-perl (0.44-2+b4) ...
Selecting previously unselected package libunicode-utf8-perl.
Preparing to unpack .../131-libunicode-utf8-perl_0.62-3_amd64.deb ...
Unpacking libunicode-utf8-perl (0.62-3) ...
Selecting previously unselected package libwww-mechanize-perl.
Preparing to unpack .../132-libwww-mechanize-perl_2.20-1_all.deb ...
Unpacking libwww-mechanize-perl (2.20-1) ...
Selecting previously unselected package libxml-namespacesupport-perl.
Preparing to unpack .../133-libxml-namespacesupport-perl_1.12-2_all.deb ...
Unpacking libxml-namespacesupport-perl (1.12-2) ...
Selecting previously unselected package libxml-sax-base-perl.
Preparing to unpack .../134-libxml-sax-base-perl_1.09-3_all.deb ...
Unpacking libxml-sax-base-perl (1.09-3) ...
Selecting previously unselected package libxml-sax-perl.
Preparing to unpack .../135-libxml-sax-perl_1.02+dfsg-4_all.deb ...
Unpacking libxml-sax-perl (1.02+dfsg-4) ...
Selecting previously unselected package libxml-libxml-perl.
Preparing to unpack .../136-libxml-libxml-perl_2.0207+dfsg+really+2.0134-7_amd64.deb ...
Unpacking libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ...
Selecting previously unselected package libyaml-0-2:amd64.
Preparing to unpack .../137-libyaml-0-2_0.2.5-2_amd64.deb ...
Unpacking libyaml-0-2:amd64 (0.2.5-2) ...
Selecting previously unselected package libyaml-libyaml-perl.
Preparing to unpack .../138-libyaml-libyaml-perl_0.904.0+ds-1_amd64.deb ...
Unpacking libyaml-libyaml-perl (0.904.0+ds-1) ...
Selecting previously unselected package plzip.
Preparing to unpack .../139-plzip_1.12-4_amd64.deb ...
Unpacking plzip (1.12-4) ...
Selecting previously unselected package lzop.
Preparing to unpack .../140-lzop_1.04-2_amd64.deb ...
Unpacking lzop (1.04-2) ...
Selecting previously unselected package patchutils.
Preparing to unpack .../141-patchutils_0.4.3-1_amd64.deb ...
Unpacking patchutils (0.4.3-1) ...
Selecting previously unselected package t1utils.
Preparing to unpack .../142-t1utils_1.41-4_amd64.deb ...
Unpacking t1utils (1.41-4) ...
Selecting previously unselected package unzip.
Preparing to unpack .../143-unzip_6.0-29_amd64.deb ...
Unpacking unzip (6.0-29) ...
Selecting previously unselected package lintian.
Preparing to unpack .../144-lintian_2.127.0_all.deb ...
Unpacking lintian (2.127.0) ...
Selecting previously unselected package sbuild-build-depends-lintian-dummy:s390x.
Preparing to unpack .../145-sbuild-build-depends-lintian-dummy_0.invalid.0_s390x.deb ...
Unpacking sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ...
Setting up libapt-pkg-perl (0.1.43) ...
Setting up liblz1:amd64 (1.15-3) ...
Setting up libksba8:amd64 (1.6.7-2+b1) ...
Setting up libberkeleydb-perl:amd64 (0.66-2) ...
Setting up plzip (1.12-4) ...
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode
update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode
Setting up libtext-charwidth-perl:amd64 (0.04-11+b4) ...
Setting up libnpth0t64:amd64 (1.8-3) ...
Setting up libunicode-utf8-perl (0.62-3) ...
Setting up libmouse-perl:amd64 (2.6.0-1) ...
Setting up libdata-messagepack-perl (1.02-3) ...
Setting up libclass-inspector-perl (1.36-3) ...
Setting up libdynaloader-functions-perl (0.004-2) ...
Setting up libtext-glob-perl (0.11-3) ...
Setting up libclass-method-modifiers-perl (2.15-1) ...
Setting up liblist-compare-perl (0.55-2) ...
Setting up libclone-perl:amd64 (0.47-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.5-2) ...
Setting up libsub-identify-perl (0.14-3+b3) ...
Setting up libcpanel-json-xs-perl:amd64 (4.40-1) ...
Setting up libhtml-tagset-perl (3.24-1) ...
Setting up libdevel-size-perl (0.85-1) ...
Setting up unzip (6.0-29) ...
Setting up liblwp-mediatypes-perl (6.04-2) ...
Setting up libyaml-libyaml-perl (0.904.0+ds-1) ...
Setting up libio-interactive-perl (1.027-1) ...
Setting up libtry-tiny-perl (0.32-1) ...
Setting up perl-openssl-defaults:amd64 (7+b2) ...
Setting up libmldbm-perl (2.05-4) ...
Setting up libxml-namespacesupport-perl (1.12-2) ...
Setting up liblzo2-2:amd64 (2.10-3+b1) ...
Setting up libtime-moment-perl (0.44-2+b4) ...
Setting up libencode-locale-perl (1.05-3) ...
Setting up libconfig-tiny-perl (2.30-1) ...
Setting up libsereal-encoder-perl (5.004+ds-1+b3) ...
Setting up liblist-utilsby-perl (0.12-2) ...
Setting up libtext-wrapi18n-perl (0.06-10) ...
Setting up libnet-netmask-perl (2.0003-1) ...
Setting up libsub-install-perl (0.929-1) ...
Setting up libfyaml0:amd64 (0.9-2) ...
Setting up libnumber-compare-perl (0.03-3) ...
Setting up patchutils (0.4.3-1) ...
Setting up libjson-maybexs-perl (1.004008-1) ...
Setting up libxml-sax-base-perl (1.09-3) ...
Setting up libio-string-perl (1.08-4) ...
Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ...
Setting up libglib2.0-0t64:amd64 (2.86.2-1) ...
No schema files found: doing nothing.
Setting up libclass-data-inheritable-perl (0.10-1) ...
Setting up libfile-find-rule-perl (0.35-1) ...
Setting up libipc-system-simple-perl (1.30-2) ...
Setting up libnet-domain-tld-perl (1.75-4) ...
Setting up libperlio-utf8-strict-perl (0.010-1+b3) ...
Setting up t1utils (1.41-4) ...
Setting up shared-mime-info (2.4-5+b3) ...
Setting up diffstat (1.68-1) ...
Setting up libvariable-magic-perl (0.64-1+b1) ...
Setting up libio-html-perl (1.004-3) ...
Setting up libb-hooks-op-check-perl:amd64 (0.22-3+b2) ...
Setting up ucf (3.0052) ...
Setting up libparams-util-perl (1.102-3+b1) ...
Setting up libtime-duration-perl (1.21-2) ...
Setting up libtext-xslate-perl:amd64 (3.5.9-2+b1) ...
Setting up libsub-exporter-progressive-perl (0.001013-3) ...
Setting up libcapture-tiny-perl (0.50-1) ...
Setting up libtimedate-perl (2.3300-2) ...
Setting up libsub-name-perl:amd64 (0.28-1) ...
Setting up libdata-validate-domain-perl (0.15-1) ...
Setting up libproc-processtable-perl:amd64 (0.637-1) ...
Setting up libpath-tiny-perl (0.148-1) ...
Setting up lzop (1.04-2) ...
Setting up libassuan9:amd64 (3.0.2-2) ...
Setting up gpgconf (2.4.8-4) ...
Setting up librole-tiny-perl (2.002004-1) ...
Setting up libipc-run3-perl (0.049-1) ...
Setting up libregexp-wildcards-perl (1.05-3) ...
Setting up libfile-sharedir-perl (1.118-3) ...
Setting up libaliased-perl (0.34-3) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006009-1) ...
Setting up libdevel-stacktrace-perl (2.0500-1) ...
Setting up libclass-xsaccessor-perl (1.19-4+b5) ...
Setting up libstemmer0d:amd64 (3.0.1-1) ...
Setting up libsort-versions-perl (1.62-3) ...
Setting up libterm-readkey-perl (2.38-2+b4) ...
Setting up libfont-ttf-perl (1.06-2) ...
Setting up openssl (3.5.4-1) ...
Setting up libtext-levenshteinxs-perl (0.03-5+b4) ...
Setting up libperlio-gzip-perl (0.20-1+b4) ...
Setting up libhtml-html5-entities-perl (0.004-3) ...
Setting up libsereal-decoder-perl (5.004+ds-1+b3) ...
Setting up libmarkdown2:amd64 (2.2.7-2.1) ...
Setting up liburi-perl (5.34-2) ...
Setting up iso-codes (4.19.0-1) ...
Setting up libnet-ipv6addr-perl (1.02-1) ...
Setting up gpg (2.4.8-4) ...
Setting up libngtcp2-crypto-gnutls8:amd64 (1.16.0-1) ...
Setting up libdata-validate-ip-perl (0.31-1) ...
Setting up libemail-address-xs-perl (1.05-1+b4) ...
Setting up libnet-ssleay-perl:amd64 (1.94-3) ...
Setting up libhttp-date-perl (6.06-1) ...
Setting up libfile-basedir-perl (0.09-2) ...
Setting up libfile-listing-perl (6.16-1) ...
Setting up libxmlb2:amd64 (0.3.24-2) ...
Setting up libcurl3t64-gnutls:amd64 (8.17.0-3) ...
Setting up libnet-http-perl (6.24-1) ...
Setting up libtext-markdown-discount-perl (0.18-1) ...
Setting up libappstream5:amd64 (1.1.1-1) ...
Setting up libexception-class-perl (1.45-1) ...
Setting up libdevel-callchecker-perl:amd64 (0.009-2) ...
Setting up libxml-sax-perl (1.02+dfsg-4) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version
Setting up ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
150 added, 0 removed; done.
Setting up libdata-validate-uri-perl (0.07-3) ...
Setting up libxs-parse-keyword-perl (0.49-1) ...
Setting up appstream (1.1.1-1) ...
✔ Metadata cache was updated successfully.
Setting up libdata-optlist-perl (0.114-1) ...
Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-7) ...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50...
update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50...
update-perl-sax-parsers: Updating overall Perl SAX parser modules info file...
Setting up libwww-robotrules-perl (6.02-1) ...
Setting up libsyntax-keyword-try-perl (0.31-1) ...
Setting up libhtml-parser-perl:amd64 (3.83-1+b2) ...
Setting up libio-socket-ssl-perl (2.095-1) ...
Setting up libsub-exporter-perl (0.990-1) ...
Setting up libhttp-message-perl (7.01-1) ...
Setting up libhtml-form-perl (6.13-1) ...
Setting up libiterator-perl (0.03+ds1-2) ...
Setting up libhttp-negotiate-perl (6.01-2) ...
Setting up libiterator-util-perl (0.02+ds1-2) ...
Setting up libhttp-cookies-perl (6.11-1) ...
Setting up libhtml-tree-perl (5.07-3) ...
Setting up libparams-classify-perl:amd64 (0.015-2+b4) ...
Setting up libcgi-pm-perl (4.71-1) ...
Setting up libmodule-runtime-perl (0.018-1) ...
Setting up libconst-fast-perl (0.014-2) ...
Setting up libdata-dpath-perl (0.60-1) ...
Setting up libmodule-implementation-perl (0.09-2) ...
Setting up libpackage-stash-perl (0.40-1) ...
Setting up libimport-into-perl (1.002005-2) ...
Setting up libmoo-perl (2.005005-1) ...
Setting up liblist-someutils-perl (0.59-1) ...
Setting up libmoox-aliases-perl (0.001006-2) ...
Setting up libb-hooks-endofscope-perl (0.28-2) ...
Setting up libnamespace-clean-perl (0.27-2) ...
Setting up liblwp-protocol-https-perl (6.14-1) ...
Setting up libwww-perl (6.81-1) ...
Setting up libhtml-tokeparser-simple-perl (3.16-4) ...
Setting up libwww-mechanize-perl (2.20-1) ...
Processing triggers for sgml-base (1.31+nmu1) ...
Processing triggers for libc-bin (2.41-12) ...
Setting up lintian (2.127.0) ...
Processing triggers for man-db (2.13.1-1) ...
Not building database; man-db/auto-update is not 'true'.
Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ...
Processing triggers for ca-certificates (20250419) ...
Updating certificates in /etc/ssl/certs...
0 added, 0 removed; done.
Running hooks in /etc/ca-certificates/update.d...
done.
Running lintian...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
+------------------------------------------------------------------------------+


+------------------------------------------------------------------------------+
| Cleanup                                                                      |
+------------------------------------------------------------------------------+

Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: n/a
Build-Time: 476
Distribution: unstable
Foreign Architectures: s390x
Host Architecture: s390x
Install-Time: 25
Job: macromoleculebuilder_4.2+dfsg-1
Lintian: pass
Machine Architecture: amd64
Package: macromoleculebuilder
Package-Time: 513
Source-Version: 4.2+dfsg-1
Space: n/a
Status: successful
Version: 4.2+dfsg-1
--------------------------------------------------------------------------------
Finished at 2025-11-26T22:30:27Z
Build needed 00:08:33, no disk space