sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | mafft 7.429-1 (armhf) Mon, 29 Jul 2019 12:02:47 +0000 | +==============================================================================+ Package: mafft Version: 7.429-1 Source Version: 7.429-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-39756485-2973-459e-b02e-acc3776970f4' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [149 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-29-0828.05.pdiff [5717 B] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-07-29-0828.05.pdiff [5717 B] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-29-0828.05.pdiff [28.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-07-29-0828.05.pdiff [28.6 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main armhf Packages [8129 kB] Fetched 8367 kB in 2s (4271 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mafft' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mafft.git Please use: git clone https://salsa.debian.org/med-team/mafft.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 613 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main mafft 7.429-1 (dsc) [1972 B] Get:2 http://debian.oregonstate.edu/debian unstable/main mafft 7.429-1 (tar) [605 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main mafft 7.429-1 (diff) [6588 B] Fetched 613 kB in 0s (12.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mafft-shVEyX/mafft-7.429' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-shVEyX' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-grcWUD/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-grcWUD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-grcWUD/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-grcWUD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-grcWUD/apt_archive ./ Sources [363 B] Get:5 copy:/<>/resolver-grcWUD/apt_archive ./ Packages [451 B] Fetched 1771 B in 0s (87.4 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch gcc-8-doc libstdc++6-8-dbg-armhf-cross libgcc1-dbg-armhf-cross libgomp1-dbg-armhf-cross libitm1-dbg-armhf-cross libatomic1-dbg-armhf-cross libasan5-dbg-armhf-cross liblsan0-dbg-armhf-cross libtsan0-dbg-armhf-cross libubsan1-dbg-armhf-cross libmpx2-dbg-armhf-cross libquadmath0-dbg-armhf-cross manpages-dev autoconf automake libtool flex bison gdb-arm-linux-gnueabihf gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-arm-linux-gnueabihf cpp-8-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf dpkg-cross file g++-8-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf gcc-8-arm-linux-gnueabihf-base gcc-8-cross-base gcc-9-cross-base gcc-arm-linux-gnueabihf libasan5-armhf-cross libatomic1-armhf-cross libc6-armhf-cross libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-armhf-cross libgcc1-armhf-cross libgomp1-armhf-cross libicu63 libio-string-perl liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-armhf-cross libstdc++6-armhf-cross libubsan1-armhf-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-armhf-cross sbuild-build-depends-core-dummy:armhf sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 42.3 MB of archives. After this operation, 154 MB of additional disk space will be used. Get:1 copy:/<>/resolver-grcWUD/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabihf amd64 2.32.51.20190727-1 [2914 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf-base amd64 8.3.0-19cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6549 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabihf amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-19cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.1.0-8cross1 [185 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armhf-cross all 2.28-10cross3 [1172 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armhf-cross all 1:9.1.0-8cross1 [37.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armhf-cross all 9.1.0-8cross1 [73.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armhf-cross all 9.1.0-8cross1 [6692 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armhf-cross all 9.1.0-8cross1 [363 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armhf-cross all 9.1.0-8cross1 [392 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armhf-cross all 9.1.0-8cross1 [112 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-armhf-cross all 8.3.0-19cross1 [614 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [6979 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabihf amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armhf-cross all 4.19.37-5cross3 [1255 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armhf-cross all 2.28-10cross3 [2150 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-armhf-cross all 8.3.0-19cross1 [1561 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-arm-linux-gnueabihf amd64 8.3.0-19cross1 [7130 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabihf amd64 4:8.3.0-1 [1180 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armhf all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.3 MB in 1s (56.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11963 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-arm-linux-gnueabihf. Preparing to unpack .../06-binutils-arm-linux-gnueabihf_2.32.51.20190727-1_amd64.deb ... Unpacking binutils-arm-linux-gnueabihf (2.32.51.20190727-1) ... Selecting previously unselected package gcc-8-arm-linux-gnueabihf-base:amd64. Preparing to unpack .../07-gcc-8-arm-linux-gnueabihf-base_8.3.0-19cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-19cross1) ... Selecting previously unselected package cpp-8-arm-linux-gnueabihf. Preparing to unpack .../08-cpp-8-arm-linux-gnueabihf_8.3.0-19cross1_amd64.deb ... Unpacking cpp-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabihf. Preparing to unpack .../09-cpp-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-8-cross-base. Preparing to unpack .../11-gcc-8-cross-base_8.3.0-19cross1_all.deb ... Unpacking gcc-8-cross-base (8.3.0-19cross1) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../12-gcc-9-cross-base_9.1.0-8cross1_all.deb ... Unpacking gcc-9-cross-base (9.1.0-8cross1) ... Selecting previously unselected package libc6-armhf-cross. Preparing to unpack .../13-libc6-armhf-cross_2.28-10cross3_all.deb ... Unpacking libc6-armhf-cross (2.28-10cross3) ... Selecting previously unselected package libgcc1-armhf-cross. Preparing to unpack .../14-libgcc1-armhf-cross_1%3a9.1.0-8cross1_all.deb ... Unpacking libgcc1-armhf-cross (1:9.1.0-8cross1) ... Selecting previously unselected package libgomp1-armhf-cross. Preparing to unpack .../15-libgomp1-armhf-cross_9.1.0-8cross1_all.deb ... Unpacking libgomp1-armhf-cross (9.1.0-8cross1) ... Selecting previously unselected package libatomic1-armhf-cross. Preparing to unpack .../16-libatomic1-armhf-cross_9.1.0-8cross1_all.deb ... Unpacking libatomic1-armhf-cross (9.1.0-8cross1) ... Selecting previously unselected package libasan5-armhf-cross. Preparing to unpack .../17-libasan5-armhf-cross_9.1.0-8cross1_all.deb ... Unpacking libasan5-armhf-cross (9.1.0-8cross1) ... Selecting previously unselected package libstdc++6-armhf-cross. Preparing to unpack .../18-libstdc++6-armhf-cross_9.1.0-8cross1_all.deb ... Unpacking libstdc++6-armhf-cross (9.1.0-8cross1) ... Selecting previously unselected package libubsan1-armhf-cross. Preparing to unpack .../19-libubsan1-armhf-cross_9.1.0-8cross1_all.deb ... Unpacking libubsan1-armhf-cross (9.1.0-8cross1) ... Selecting previously unselected package libgcc-8-dev-armhf-cross. Preparing to unpack .../20-libgcc-8-dev-armhf-cross_8.3.0-19cross1_all.deb ... Unpacking libgcc-8-dev-armhf-cross (8.3.0-19cross1) ... Selecting previously unselected package gcc-8-arm-linux-gnueabihf. Preparing to unpack .../21-gcc-8-arm-linux-gnueabihf_8.3.0-19cross1_amd64.deb ... Unpacking gcc-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabihf. Preparing to unpack .../22-gcc-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Selecting previously unselected package linux-libc-dev-armhf-cross. Preparing to unpack .../23-linux-libc-dev-armhf-cross_4.19.37-5cross3_all.deb ... Unpacking linux-libc-dev-armhf-cross (4.19.37-5cross3) ... Selecting previously unselected package libc6-dev-armhf-cross. Preparing to unpack .../24-libc6-dev-armhf-cross_2.28-10cross3_all.deb ... Unpacking libc6-dev-armhf-cross (2.28-10cross3) ... Selecting previously unselected package libstdc++-8-dev-armhf-cross. Preparing to unpack .../25-libstdc++-8-dev-armhf-cross_8.3.0-19cross1_all.deb ... Unpacking libstdc++-8-dev-armhf-cross (8.3.0-19cross1) ... Selecting previously unselected package g++-8-arm-linux-gnueabihf. Preparing to unpack .../26-g++-8-arm-linux-gnueabihf_8.3.0-19cross1_amd64.deb ... Unpacking g++-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Selecting previously unselected package g++-arm-linux-gnueabihf. Preparing to unpack .../27-g++-arm-linux-gnueabihf_4%3a8.3.0-1_amd64.deb ... Unpacking g++-arm-linux-gnueabihf (4:8.3.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../28-libconfig-inifiles-perl_3.000001-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000001-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../29-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../30-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../31-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../32-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../33-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../34-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../35-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../36-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../37-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-armhf. Preparing to unpack .../43-crossbuild-essential-armhf_12.6_all.deb ... Unpacking crossbuild-essential-armhf (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:armhf. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libc6-armhf-cross (2.28-10cross3) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-8-cross-base (8.3.0-19cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-8-arm-linux-gnueabihf-base:amd64 (8.3.0-19cross1) ... Setting up linux-libc-dev-armhf-cross (4.19.37-5cross3) ... Setting up gcc-9-cross-base (9.1.0-8cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up binutils-arm-linux-gnueabihf (2.32.51.20190727-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up cpp-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libgomp1-armhf-cross (9.1.0-8cross1) ... Setting up libc6-dev-armhf-cross (2.28-10cross3) ... Setting up libatomic1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc1-armhf-cross (1:9.1.0-8cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up cpp-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libasan5-armhf-cross (9.1.0-8cross1) ... Setting up libstdc++6-armhf-cross (9.1.0-8cross1) ... Setting up libubsan1-armhf-cross (9.1.0-8cross1) ... Setting up libgcc-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-8-dev-armhf-cross (8.3.0-19cross1) ... Setting up gcc-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up gcc-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up g++-8-arm-linux-gnueabihf (8.3.0-19cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:8.3.0-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armhf (12.6) ... Setting up sbuild-build-depends-core-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-grcWUD/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-grcWUD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-grcWUD/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-grcWUD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-grcWUD/apt_archive ./ Sources [485 B] Get:5 copy:/<>/resolver-grcWUD/apt_archive ./ Packages [568 B] Fetched 2016 B in 0s (107 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:armhf 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-grcWUD/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:armhf. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:armhf (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12) Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper-compat (= 12) dpkg-deb: building package 'sbuild-build-depends-mafft-dummy' in '/<>/resolver-grcWUD/apt_archive/sbuild-build-depends-mafft-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-mafft-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-grcWUD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-grcWUD/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-grcWUD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-grcWUD/apt_archive ./ Sources [635 B] Get:5 copy:/<>/resolver-grcWUD/apt_archive ./ Packages [710 B] Fetched 2308 B in 0s (120 kB/s) Reading package lists... Reading package lists... Install mafft build dependencies (apt-based resolver) ----------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db po-debconf Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf manpages-dev:armhf libstdc++-8-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:armhf gcc-9-base:armhf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armhf libatomic1:armhf libbsd0 libc6:armhf libc6-dev:armhf libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-8-dev:armhf libgcc1:armhf libglib2.0-0 libgomp1:armhf libncurses6 libpipeline1 libsigsegv2 libstdc++-8-dev:armhf libstdc++6:armhf libsub-override-perl libtool libubsan1:armhf libuchardet0 linux-libc-dev:armhf m4 man-db po-debconf sbuild-build-depends-mafft-dummy:armhf 0 upgraded, 42 newly installed, 0 to remove and 0 not upgraded. Need to get 18.9 MB of archives. After this operation, 80.0 MB of additional disk space will be used. Get:1 copy:/<>/resolver-grcWUD/apt_archive ./ sbuild-build-depends-mafft-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armhf gcc-9-base armhf 9.1.0-10 [190 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.3.0-1 [21.4 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.3.0-1 [13.9 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12.20190723-1 [80.6 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-1 [1294 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190713-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.2.3 [1026 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main armhf gcc-8-base armhf 8.3.0-19 [192 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main armhf libgcc1 armhf 1:9.1.0-10 [37.3 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main armhf libc6 armhf 2.28-10 [2390 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main armhf libasan5 armhf 9.1.0-10 [370 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main armhf libatomic1 armhf 9.1.0-10 [6880 B] Get:36 http://debian.oregonstate.edu/debian unstable/main armhf linux-libc-dev armhf 4.19.37-6 [1168 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main armhf libc6-dev armhf 2.28-10 [2149 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main armhf libgomp1 armhf 9.1.0-10 [75.1 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++6 armhf 9.1.0-10 [431 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main armhf libubsan1 armhf 9.1.0-10 [113 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main armhf libgcc-8-dev armhf 8.3.0-19 [612 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main armhf libstdc++-8-dev armhf 8.3.0-19 [1561 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 18.9 MB in 0s (51.4 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 15015 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.9.1-2_amd64.deb ... Unpacking libbsd0:amd64 (0.9.1-2) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.5-2_amd64.deb ... Unpacking man-db (2.8.5-2) ... Selecting previously unselected package gcc-9-base:armhf. Preparing to unpack .../06-gcc-9-base_9.1.0-10_armhf.deb ... Unpacking gcc-9-base:armhf (9.1.0-10) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.3.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.3.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.3.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.3.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.12.20190723-1_amd64.deb ... Unpacking dwz (0.12.20190723-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-1_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-1) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.12-3_amd64.deb ... Unpacking libcroco3:amd64 (0.6.12-3) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190713-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190713-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.2.3_all.deb ... Unpacking debhelper (12.2.3) ... Selecting previously unselected package gcc-8-base:armhf. Preparing to unpack .../29-gcc-8-base_8.3.0-19_armhf.deb ... Unpacking gcc-8-base:armhf (8.3.0-19) ... Selecting previously unselected package libgcc1:armhf. Preparing to unpack .../30-libgcc1_1%3a9.1.0-10_armhf.deb ... Unpacking libgcc1:armhf (1:9.1.0-10) ... Selecting previously unselected package libc6:armhf. Preparing to unpack .../31-libc6_2.28-10_armhf.deb ... Unpacking libc6:armhf (2.28-10) ... Selecting previously unselected package libasan5:armhf. Preparing to unpack .../32-libasan5_9.1.0-10_armhf.deb ... Unpacking libasan5:armhf (9.1.0-10) ... Selecting previously unselected package libatomic1:armhf. Preparing to unpack .../33-libatomic1_9.1.0-10_armhf.deb ... Unpacking libatomic1:armhf (9.1.0-10) ... Selecting previously unselected package linux-libc-dev:armhf. Preparing to unpack .../34-linux-libc-dev_4.19.37-6_armhf.deb ... Unpacking linux-libc-dev:armhf (4.19.37-6) ... Selecting previously unselected package libc6-dev:armhf. Preparing to unpack .../35-libc6-dev_2.28-10_armhf.deb ... Unpacking libc6-dev:armhf (2.28-10) ... Selecting previously unselected package libgomp1:armhf. Preparing to unpack .../36-libgomp1_9.1.0-10_armhf.deb ... Unpacking libgomp1:armhf (9.1.0-10) ... Selecting previously unselected package libstdc++6:armhf. Preparing to unpack .../37-libstdc++6_9.1.0-10_armhf.deb ... Unpacking libstdc++6:armhf (9.1.0-10) ... Selecting previously unselected package libubsan1:armhf. Preparing to unpack .../38-libubsan1_9.1.0-10_armhf.deb ... Unpacking libubsan1:armhf (9.1.0-10) ... Selecting previously unselected package libgcc-8-dev:armhf. Preparing to unpack .../39-libgcc-8-dev_8.3.0-19_armhf.deb ... Unpacking libgcc-8-dev:armhf (8.3.0-19) ... Selecting previously unselected package libstdc++-8-dev:armhf. Preparing to unpack .../40-libstdc++-8-dev_8.3.0-19_armhf.deb ... Unpacking libstdc++-8-dev:armhf (8.3.0-19) ... Selecting previously unselected package sbuild-build-depends-mafft-dummy:armhf. Preparing to unpack .../41-sbuild-build-depends-mafft-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-mafft-dummy:armhf (0.invalid.0) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libarchive-zip-perl (1.64-1) ... Setting up libglib2.0-0:amd64 (2.60.6-1) ... No schema files found: doing nothing. Setting up linux-libc-dev:armhf (4.19.37-6) ... Setting up gettext-base (0.19.8.1-9) ... Setting up autotools-dev (20180224.1) ... Setting up libncurses6:amd64 (6.1+20190713-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:armhf (8.3.0-19) ... Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.12-3) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:armhf (9.1.0-10) ... Setting up libfile-stripnondeterminism-perl (1.3.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12.20190723-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libc6:armhf (2.28-10) ... Setting up libc6-dev:armhf (2.28-10) ... Setting up libgcc1:armhf (1:9.1.0-10) ... Setting up libgomp1:armhf (9.1.0-10) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armhf (9.1.0-10) ... Setting up libatomic1:armhf (9.1.0-10) ... Setting up dh-strip-nondeterminism (1.3.0-1) ... Setting up libstdc++6:armhf (9.1.0-10) ... Setting up debhelper (12.2.3) ... Setting up libubsan1:armhf (9.1.0-10) ... Setting up libgcc-8-dev:armhf (8.3.0-19) ... Setting up libstdc++-8-dev:armhf (8.3.0-19) ... Setting up sbuild-build-depends-mafft-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190727-1 dpkg-dev_1.19.7 g++-8_8.3.0-19 gcc-8_8.3.0-19 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 linux-libc-dev_4.19.37-6 Package versions: adduser_3.118 apt_1.8.2 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190727-1 binutils-arm-linux-gnueabihf_2.32.51.20190727-1 binutils-common_2.32.51.20190727-1 binutils-x86-64-linux-gnu_2.32.51.20190727-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-19 cpp-8-arm-linux-gnueabihf_8.3.0-19cross1 cpp-arm-linux-gnueabihf_4:8.3.0-1 cross-config_2.6.15-3 crossbuild-essential-armhf_12.6 dash_0.5.10.2-6 debconf_1.5.72 debhelper_12.2.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.3.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.12.20190723-1 e2fsprogs_1.45.3-3 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:8.3.0-1 g++-8_8.3.0-19 g++-8-arm-linux-gnueabihf_8.3.0-19cross1 g++-arm-linux-gnueabihf_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-19 gcc-8-arm-linux-gnueabihf_8.3.0-19cross1 gcc-8-arm-linux-gnueabihf-base_8.3.0-19cross1 gcc-8-base_8.3.0-19 gcc-8-cross-base_8.3.0-19cross1 gcc-9-base_9.1.0-10 gcc-9-cross-base_9.1.0-8cross1 gcc-arm-linux-gnueabihf_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.2 libarchive-zip-perl_1.64-1 libasan5_9.1.0-10 libasan5-armhf-cross_9.1.0-8cross1 libatomic1_9.1.0-10 libatomic1-armhf-cross_9.1.0-8cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190727-1 libblkid1_2.34-0.1 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-armhf-cross_2.28-10cross3 libc6-dev_2.28-10 libc6-dev-armhf-cross_2.28-10cross3 libcap-ng0_0.7.9-2 libcc1-0_9.1.0-10 libcom-err2_1.45.3-3 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-3 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.3.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-19 libgcc-8-dev-armhf-cross_8.3.0-19cross1 libgcc1_1:9.1.0-10 libgcc1-armhf-cross_1:9.1.0-8cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4+b1 libgdbm6_1.18.1-4+b1 libglib2.0-0_2.60.6-1 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.8-2 libgomp1_9.1.0-10 libgomp1-armhf-cross_9.1.0-8cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.1.0-10 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.1.0-10 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-19 libncurses6_6.1+20190713-1 libncursesw6_6.1+20190713-1 libnettle6_3.4.1-1 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5 libpcre3_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.1.0-10 libseccomp2_2.4.1-2 libselinux1_2.9-2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-3 libstdc++-8-dev_8.3.0-19 libstdc++-8-dev-armhf-cross_8.3.0-19cross1 libstdc++6_9.1.0-10 libstdc++6-armhf-cross_9.1.0-8cross1 libsub-override-perl_0.09-2 libsystemd0_241-7 libtasn1-6_4.14-2 libtinfo6_6.1+20190713-1 libtool_2.4.6-10 libtsan0_9.1.0-10 libubsan1_9.1.0-10 libubsan1-armhf-cross_9.1.0-8cross1 libuchardet0_0.0.6-3 libudev1_241-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.37-6 linux-libc-dev-armhf-cross_4.19.37-5cross3 login_1:4.7-2 logsave_1.45.3-3 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190713-1 ncurses-bin_6.1+20190713-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-mafft-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-2 tar_1.30+dfsg-6 tzdata_2019b-1 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sat Jul 27 11:06:11 2019 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mafft_7.429-1.dsc dpkg-source: info: extracting mafft in /<> dpkg-source: info: unpacking mafft_7.429.orig.tar.gz dpkg-source: info: unpacking mafft_7.429-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-39756485-2973-459e-b02e-acc3776970f4 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package mafft dpkg-buildpackage: info: source version 7.429-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf fakeroot debian/rules clean dh clean --sourcedirectory=core dh_auto_clean -O--sourcedirectory=core cd core && make -j1 clean make[1]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb mafft-sparsecore.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[1]: Leaving directory '/<>/core' dh_autoreconf_clean -O--sourcedirectory=core debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules build-arch dh build-arch --sourcedirectory=core dh_update_autotools_config -a -O--sourcedirectory=core dh_autoreconf -a -O--sourcedirectory=core dh_auto_configure -a -O--sourcedirectory=core debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd core && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from io.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ io.c: In function 'PreRead': io.c:1065:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); *locnjob = atoi( b ); ^~~~~~~~~~~~~~~~~~~ io.c:1070:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:1074:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); nleni = atoi( b ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'FRead': io.c:1110:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:1200:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ ^~~~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_doublehalf_part_pointer': io.c:2635:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2636:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ^~~~~~~~~~~~~~~~~ io.c:2641:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_doublehalf_pointer': io.c:2671:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2672:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ^~~~~~~~~~~~~~~~~ io.c:2677:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_doublehalf': io.c:2705:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2706:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^~~~~~~~~~~~~~~~~ io.c:2707:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_double': io.c:2735:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2736:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^~~~~~~~~~~~~~~~~ io.c:2737:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_int': io.c:2765:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2766:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^~~~~~~~~~~~~~~~~ io.c:2767:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2_pointer': io.c:2796:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2797:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^~~~~~~~~~~~~~~~~ io.c:2798:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'readhat2': io.c:2826:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c:2827:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); ^~~~~~~~~~~~~~~~~ io.c:2828:5: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B, fp ); ^~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta_sub': io.c:3028:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3043:13: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadSsearch': io.c:3062:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadBlastm7_avscore': io.c:3190:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3197:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3198:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadBlastm7_scoreonly': io.c:3313:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3320:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3321:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadBlastm7': io.c:3431:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3438:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3439:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34noalign': io.c:3463:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34m10_nuc': io.c:3500:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3526:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34m10': io.c:3639:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3663:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34m10_scoreonly_nucbk': io.c:3766:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34m10_scoreonly_nuc': io.c:3816:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34m10_scoreonly': io.c:3877:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta34': io.c:3933:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c:3959:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); // initn: ^~~~~~~~~~~~~~~~~~~ io.c:3962:10: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); // Smith-Waterman score ^~~~~~~~~~~~~~~~~~~ io.c:3974:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta3': io.c:3996:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadFasta': io.c:4021:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadOpt': io.c:4058:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'ReadOpt2': io.c:4079:9: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'readOtherOptions': io.c:4175:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( b, B-1, fp ); ^~~~~~~~~~~~~~~~~~~ io.c: In function 'loadaamtx': io.c:5433:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( inorder, 999, mf ); ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5465:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, mf ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5488:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, mf ); ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'readsubalignmentstable': io.c:5644:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, linelen-1, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5665:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, linelen-1, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'readmccaskill': io.c:5719:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5729:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function 'readpairfoldalign': io.c:5788:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5801:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5808:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5822:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ io.c:5828:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from mltaln9.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mltaln9.c: In function 'check_guidetreefile': mltaln9.c:2802:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( string, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function 'readlocalhomtable2_single_bin_noseek': mltaln9.c:15112:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( &size, sizeof( int ), 1, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15113:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( &opt, sizeof( double ), 1, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15116:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( m, size*sizeof( int ), 3, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15152:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] fread( &c, sizeof( char ), 1, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function 'createchain': mltaln9.c:2065:17: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] instanttree = calloc( treelen, sizeof( char ) ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mltaln.h:14, from mltaln9.c:1: /usr/arm-linux-gnueabihf/include/stdlib.h:541:14: note: in a call to allocation function 'calloc' declared here extern void *calloc (size_t __nmemb, size_t __size) ^~~~~~ mltaln9.c:2076:10: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] order = calloc( nseq, sizeof( int ) ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mltaln.h:14, from mltaln9.c:1: /usr/arm-linux-gnueabihf/include/stdlib.h:541:14: note: in a call to allocation function 'calloc' declared here extern void *calloc (size_t __nmemb, size_t __size) ^~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from mltaln9.c:1: In function 'fgets', inlined from 'check_guidetreefile' at mltaln9.c:2802:2: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:263:9: warning: call to '__fgets_chk_warn' declared with attribute warning: fgets called with bigger size than length of destination buffer return __fgets_chk_warn (__s, __bos (__s), __n, __stream); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from tddis.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from constants.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ In file included from constants.c:7: blosum.c: In function 'overridematrix': blosum.c:369:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( buf, 499, fp ); ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from nj.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from partSalignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Lalignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from rna.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ rna.c: In function 'rnaalifoldcall': rna.c:225:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( cmd ); ^~~~~~~~~~~~~ rna.c:245:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ rna.c:285:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( cmd ); ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Salignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Dalignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Falign.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Falign_localhom.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Galign11.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from Lalign11.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from genalign11.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from MSalignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from fftFunctions.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from fft.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from tditeration.c:9: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from dvtditr.c:4: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dvtditr.c: In function 'main': dvtditr.c:1020:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from defs.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from SAalignmm.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from treeOperation.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from addfunctions.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from dndfast7.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dndfast7.c: In function 'main': dndfast7.c:326:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from dndblast.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ dndblast.c: In function 'main': dndblast.c:201:4: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ dndblast.c:382:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from sextet5.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from mafft-distance.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from MSalign11.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from suboptalign11.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalignmain.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from pairlocalalignmain.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from pairlocalalign.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pairlocalalign.c: In function 'calllast_once': pairlocalalign.c:1055:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( command ); ^~~~~~~~~~~~~~~~~ pairlocalalign.c:1091:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( command ); ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'readlastresx': pairlocalalign.c:607:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'calllast_fast': pairlocalalign.c:980:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( command ); ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'lastcallthread': pairlocalalign.c:871:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( command ); ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'readlastresx_singleq': pairlocalalign.c:373:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'readhat4': pairlocalalign.c:1531:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( oneline, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1543:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( oneline, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'recalllara': pairlocalalign.c:1244:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'callmxscarna_giving_bpp': pairlocalalign.c:1407:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairlocalalign.c:1409:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairlocalalign.c:1429:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1450:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1464:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1484:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1486:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'calldafs_giving_bpp': pairlocalalign.c:1290:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairlocalalign.c:1292:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairlocalalign.c:1312:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1333:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1343:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ pairlocalalign.c:1363:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1365:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1367:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function 'pairalign_node': pairlocalalign.c:3438:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "rm -rf hat3dir" ); // toriaezu ^~~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3439:2: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "mkdir hat3dir" ); // toriaezu ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3444:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( fn ); ^~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairlocalalignmain.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from multi2hat3s.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ pairash.c: In function 'prepareash': pairash.c:639:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:681:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'callrash': pairash.c:485:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairash.c: In function 'readrash': pairash.c:277:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:284:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:289:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:294:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'preparetmalign': pairash.c:530:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:576:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:587:4: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( command ); ^~~~~~~~~~~~~~~~~ pairash.c: In function 'checkcbeta': pairash.c:321:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( linec, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'calltmalign': pairash.c:347:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ pairash.c:356:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( com, 100, fp ); ^~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'readtmalign': pairash.c:228:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:232:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:235:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:238:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, nlenmax*2, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'callrash.isra.1': pairash.c:428:29: warning: '.' directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] sprintf( cachefile, "%s/%s.%s.rash", cachedir, fname1, fname2 ); ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 8 or more bytes (assuming 10007) into a destination of size 10000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:484:22: warning: '%s' directive writing up to 9999 bytes into a region of size 9996 [-Wformat-overflow=] sprintf( com, "cat %s > %s.rashout", cachefile, pairid ); ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 16 and 11014 bytes into a destination of size 10000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'calltmalign.isra.2': pairash.c:346:27: warning: '%s' directive writing up to 9999 bytes into a region of size 9991 [-Wformat-overflow=] sprintf( com, "mkdir -p %s", cachedir ); ^~ ~~~~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output between 10 and 10009 bytes into a destination of size 10000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:349:31: warning: '-' directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] sprintf( cachefile, "%s/%s%s-%s%s", cachedir, fname1, chain1, fname2, chain2 ); ^ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 3 or more bytes (assuming 10002) into a destination of size 10000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function 'preparetmalign.constprop': pairash.c:586:29: warning: '%s' directive writing up to 999 bytes into a region of size 996 [-Wformat-overflow=] sprintf( command, "cp %s %s.pdb", sline, fname ); ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 9 or more bytes (assuming 1008) into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:588:44: warning: '%s' directive writing up to 999 bytes into a region of size 983 [-Wformat-overflow=] sprintf( command, "perl \"%s/clean.pl\" %s.pdb", whereispairalign, fname ); ^~ ~~~~~ In file included from /usr/arm-linux-gnueabihf/include/stdio.h:873, from mltaln.h:13, from pairash.c:1: /usr/arm-linux-gnueabihf/include/bits/stdio2.h:36:10: note: '__builtin___sprintf_chk' output 22 or more bytes (assuming 1021) into a destination of size 1000 return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ __bos (__s), __fmt, __va_arg_pack ()); ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from addsingle.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -o maffttext2hex maffttext2hex.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread maffttext2hex.c: In function 'main': maffttext2hex.c:55:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( (char *)buf, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o hex2maffttext hex2maffttext.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from splittbfast.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ splittbfast.c: In function 'main': splittbfast.c:3218:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from disttbfast.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ disttbfast.c: In function 'disttbfast': disttbfast.c:3638:6: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from tbfast.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ tbfast.c: In function 'main': tbfast.c:3190:5: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "cp infile.tree GuideTree" ); // tekitou ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nodepair.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from nodepair.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o nodepair mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o nodepair.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from mafft-profile.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Lalign11.o genalign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from f2cl.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ f2cl.c: In function 'main': f2cl.c:287:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, B-1, orderfp ); ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from mccaskillwrap.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ mccaskillwrap.c: In function 'main': mccaskillwrap.c:372:4: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mccaskillwrap.c: In function 'athread': mccaskillwrap.c:115:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ mccaskillwrap.c:117:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ mccaskillwrap.c:129:3: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); // for cygwin, wakaran ^~~~~~~~~~~~~ mccaskillwrap.c:155:4: warning: ignoring return value of 'system', declared with attribute warn_unused_result [-Wunused-result] system( com ); ^~~~~~~~~~~~~ mccaskillwrap.c: In function 'readrawmccaskill': mccaskillwrap.c:46:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, fp ); ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from contrafoldwrap.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ contrafoldwrap.c: In function 'readcontrafold': contrafoldwrap.c:57:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 9999, fp ); ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from countlen.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from seq2regtable.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from regtable2seq.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ regtable2seq.c: In function 'readereg': regtable2seq.c:69:2: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c:97:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c: In function 'readreg': regtable2seq.c:120:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, regfp ); ^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from score.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from getlag.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from dndpre.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from setcore.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from replaceu.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from restoreu.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ restoreu.c: In function 'main': restoreu.c:177:4: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( gett, 999, dlfp ); ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from setdirection.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ setdirection.c: In function 'main': setdirection.c:132:3: warning: ignoring return value of 'fgets', declared with attribute warn_unused_result [-Wunused-result] fgets( line, 99, difp ); ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabihf-gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from makedirectionlist.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ arm-linux-gnueabihf-gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabihf-gcc -o version version.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread In file included from /usr/arm-linux-gnueabihf/include/bits/libc-header-start.h:33, from /usr/arm-linux-gnueabihf/include/stdio.h:27, from mltaln.h:13, from version.c:1: /usr/arm-linux-gnueabihf/include/features.h:184:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp] # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" ^~~~~~~ sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-sparsecore.tmpl > mafft-sparsecore.rb cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. make[2]: Leaving directory '/<>/core' make[1]: Leaving directory '/<>' dh_auto_test -a -O--sourcedirectory=core create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch --sourcedirectory=core dh_testroot -a -O--sourcedirectory=core dh_prep -a -O--sourcedirectory=core debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft cd core && make -j1 install DESTDIR=/<>/debian/mafft AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft make[2]: Entering directory '/<>/core' cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. mkdir -p /<>/debian/mafft/usr/lib/mafft/lib/mafft chmod 755 /<>/debian/mafft/usr/lib/mafft/lib/mafft mkdir -p /<>/debian/mafft/usr/lib/mafft/bin chmod 755 /<>/debian/mafft/usr/lib/mafft/bin chmod 755 mafft mafft-homologs.rb mafft-sparsecore.rb install --strip-program=true mafft mafft-homologs.rb mafft-sparsecore.rb /<>/debian/mafft/usr/lib/mafft/bin install: WARNING: ignoring --strip-program option as -s option was not specified chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails install --strip-program=true -s dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore replaceu restoreu setdirection makedirectionlist version /<>/debian/mafft/usr/lib/mafft/lib/mafft install --strip-program=true mafftash_premafft.pl seekquencer_premafft.pl /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified ( cd /<>/debian/mafft/usr/lib/mafft/bin; \ rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \ rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \ ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \ ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \ ln -s mafft einsi; \ ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \ ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \ ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\ rm -f mafft-profile mafft-profile.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-profile .; \ rm -f mafft-distance mafft-distance.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-distance . ) mkdir -p /<>/debian/mafft/usr/share/man/man1 chmod 755 /<>/debian/mafft/usr/share/man/man1 install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified make[2]: Leaving directory '/<>/core' rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=core dh_installchangelogs -a -O--sourcedirectory=core dh_installman -a -O--sourcedirectory=core dh_installinit -a -O--sourcedirectory=core dh_installsystemduser -a -O--sourcedirectory=core dh_perl -a -O--sourcedirectory=core dh_link -a -O--sourcedirectory=core dh_strip_nondeterminism -a -O--sourcedirectory=core debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X test/sample make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=core dh_missing -a -O--sourcedirectory=core dh_dwz -a -O--sourcedirectory=core dh_strip -a -O--sourcedirectory=core dh_makeshlibs -a -O--sourcedirectory=core dh_shlibdeps -a -O--sourcedirectory=core dh_installdeb -a -O--sourcedirectory=core dh_gencontrol -a -O--sourcedirectory=core dh_md5sums -a -O--sourcedirectory=core dh_builddeb -a -O--sourcedirectory=core dpkg-deb: building package 'mafft' in '../mafft_7.429-1_armhf.deb'. dpkg-deb: building package 'mafft-dbgsym' in '../mafft-dbgsym_7.429-1_armhf.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mafft_7.429-1_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-07-29T12:04:33Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-grcWUD/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-mafft-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-grcWUD/apt_archive ./ InRelease Get:2 copy:/<>/resolver-grcWUD/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-grcWUD/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-grcWUD/apt_archive ./ Sources [756 B] Get:5 copy:/<>/resolver-grcWUD/apt_archive ./ Packages [825 B] Fetched 2544 B in 0s (125 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libhtml-template-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libparams-classify-perl libparse-debianchangelog-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:armhf t1utils 0 upgraded, 63 newly installed, 0 to remove and 0 not upgraded. Need to get 8433 kB of archives. After this operation, 22.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-grcWUD/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-2 [72.4 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-2 [160 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1 [33.4 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-1 [645 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.12-1 [18.6 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1c-1 [1535 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libparse-debianchangelog-perl all 1.2.0-13 [59.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2 [90.4 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.16.0 [1189 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8433 kB in 0s (30.4 MB/s) Selecting previously unselected package readline-common. (Reading database ... 17737 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-2_all.deb ... Unpacking readline-common (8.0-2) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-2_amd64.deb ... Unpacking libreadline8:amd64 (8.0-2) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1_amd64.deb ... Unpacking diffstat (1.62-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../06-libsqlite3-0_3.29.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.29.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../07-gpg_2.2.17-3_amd64.deb ... Unpacking gpg (2.2.17-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../08-libapt-pkg-perl_0.1.36+b1_amd64.deb ... Unpacking libapt-pkg-perl (0.1.36+b1) ... Selecting previously unselected package libb-hooks-op-check-perl. Preparing to unpack .../09-libb-hooks-op-check-perl_0.22-1+b1_amd64.deb ... Unpacking libb-hooks-op-check-perl (0.22-1+b1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../10-libcapture-tiny-perl_0.48-1_all.deb ... Unpacking libcapture-tiny-perl (0.48-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../11-libhtml-tagset-perl_3.20-3_all.deb ... Unpacking libhtml-tagset-perl (3.20-3) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../12-liburi-perl_1.76-1_all.deb ... Unpacking liburi-perl (1.76-1) ... Selecting previously unselected package libhtml-parser-perl. Preparing to unpack .../13-libhtml-parser-perl_3.72-3+b3_amd64.deb ... Unpacking libhtml-parser-perl (3.72-3+b3) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../14-libcgi-pm-perl_4.44-1_all.deb ... Unpacking libcgi-pm-perl (4.44-1) ... Selecting previously unselected package libsub-name-perl. Preparing to unpack .../15-libsub-name-perl_0.21-1+b3_amd64.deb ... Unpacking libsub-name-perl (0.21-1+b3) ... Selecting previously unselected package libclass-accessor-perl. Preparing to unpack .../16-libclass-accessor-perl_0.51-1_all.deb ... Unpacking libclass-accessor-perl (0.51-1) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../17-libclass-method-modifiers-perl_2.12-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.12-1) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../18-libclone-perl_0.41-1+b1_amd64.deb ... Unpacking libclone-perl (0.41-1+b1) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../19-libdynaloader-functions-perl_0.003-1_all.deb ... Unpacking libdynaloader-functions-perl (0.003-1) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../20-libdevel-callchecker-perl_0.008-1_amd64.deb ... Unpacking libdevel-callchecker-perl (0.008-1) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../21-libsub-exporter-progressive-perl_0.001013-1_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-1) ... Selecting previously unselected package libdevel-globaldestruction-perl. Preparing to unpack .../22-libdevel-globaldestruction-perl_0.14-1_all.deb ... Unpacking libdevel-globaldestruction-perl (0.14-1) ... Selecting previously unselected package libdigest-hmac-perl. Preparing to unpack .../23-libdigest-hmac-perl_1.03+dfsg-2_all.deb ... Unpacking libdigest-hmac-perl (1.03+dfsg-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../24-libssl1.1_1.1.1c-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1c-1) ... Selecting previously unselected package perl-openssl-defaults:amd64. Preparing to unpack .../25-perl-openssl-defaults_3_amd64.deb ... Unpacking perl-openssl-defaults:amd64 (3) ... Selecting previously unselected package libnet-ssleay-perl. Preparing to unpack .../26-libnet-ssleay-perl_1.88-1_amd64.deb ... Unpacking libnet-ssleay-perl (1.88-1) ... Selecting previously unselected package libio-socket-ssl-perl. Preparing to unpack .../27-libio-socket-ssl-perl_2.066-1_all.deb ... Unpacking libio-socket-ssl-perl (2.066-1) ... Selecting previously unselected package libnet-smtp-ssl-perl. Preparing to unpack .../28-libnet-smtp-ssl-perl_1.04-1_all.deb ... Unpacking libnet-smtp-ssl-perl (1.04-1) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../29-libtimedate-perl_2.3000-2_all.deb ... Unpacking libtimedate-perl (2.3000-2) ... Selecting previously unselected package libmailtools-perl. Preparing to unpack .../30-libmailtools-perl_2.21-1_all.deb ... Unpacking libmailtools-perl (2.21-1) ... Selecting previously unselected package libnet-ip-perl. Preparing to unpack .../31-libnet-ip-perl_1.26-2_all.deb ... Unpacking libnet-ip-perl (1.26-2) ... Selecting previously unselected package libnet-dns-perl. Preparing to unpack .../32-libnet-dns-perl_1.20-1_all.deb ... Unpacking libnet-dns-perl (1.20-1) ... Selecting previously unselected package libnet-domain-tld-perl. Preparing to unpack .../33-libnet-domain-tld-perl_1.75-1_all.deb ... Unpacking libnet-domain-tld-perl (1.75-1) ... Selecting previously unselected package libemail-valid-perl. Preparing to unpack .../34-libemail-valid-perl_1.202-1_all.deb ... Unpacking libemail-valid-perl (1.202-1) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../35-libexporter-tiny-perl_1.002001-1_all.deb ... Unpacking libexporter-tiny-perl (1.002001-1) ... Selecting previously unselected package libipc-system-simple-perl. Preparing to unpack .../36-libipc-system-simple-perl_1.25-4_all.deb ... Unpacking libipc-system-simple-perl (1.25-4) ... Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../37-libfile-basedir-perl_0.08-1_all.deb ... Unpacking libfile-basedir-perl (0.08-1) ... Selecting previously unselected package libfuture-perl. Preparing to unpack .../38-libfuture-perl_0.41-1_all.deb ... Unpacking libfuture-perl (0.41-1) ... Selecting previously unselected package libparams-classify-perl. Preparing to unpack .../39-libparams-classify-perl_0.015-1+b1_amd64.deb ... Unpacking libparams-classify-perl (0.015-1+b1) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../40-libmodule-runtime-perl_0.016-1_all.deb ... Unpacking libmodule-runtime-perl (0.016-1) ... Selecting previously unselected package libimport-into-perl. Preparing to unpack .../41-libimport-into-perl_1.002005-1_all.deb ... Unpacking libimport-into-perl (1.002005-1) ... Selecting previously unselected package libstruct-dumb-perl. Preparing to unpack .../42-libstruct-dumb-perl_0.09-1_all.deb ... Unpacking libstruct-dumb-perl (0.09-1) ... Selecting previously unselected package libio-async-perl. Preparing to unpack .../43-libio-async-perl_0.74-1_all.deb ... Unpacking libio-async-perl (0.74-1) ... Selecting previously unselected package libio-pty-perl. Preparing to unpack .../44-libio-pty-perl_1%3a1.08-1.1+b5_amd64.deb ... Unpacking libio-pty-perl (1:1.08-1.1+b5) ... Selecting previously unselected package libipc-run-perl. Preparing to unpack .../45-libipc-run-perl_20180523.0-1_all.deb ... Unpacking libipc-run-perl (20180523.0-1) ... Selecting previously unselected package liblist-compare-perl. Preparing to unpack .../46-liblist-compare-perl_0.53-1_all.deb ... Unpacking liblist-compare-perl (0.53-1) ... Selecting previously unselected package liblist-moreutils-perl. Preparing to unpack .../47-liblist-moreutils-perl_0.416-1+b4_amd64.deb ... Unpacking liblist-moreutils-perl (0.416-1+b4) ... Selecting previously unselected package librole-tiny-perl. Preparing to unpack .../48-librole-tiny-perl_2.000006-1_all.deb ... Unpacking librole-tiny-perl (2.000006-1) ... Selecting previously unselected package libstrictures-perl. Preparing to unpack .../49-libstrictures-perl_2.000006-1_all.deb ... Unpacking libstrictures-perl (2.000006-1) ... Selecting previously unselected package libsub-quote-perl. Preparing to unpack .../50-libsub-quote-perl_2.006003-1_all.deb ... Unpacking libsub-quote-perl (2.006003-1) ... Selecting previously unselected package libmoo-perl. Preparing to unpack .../51-libmoo-perl_2.003004-2_all.deb ... Unpacking libmoo-perl (2.003004-2) ... Selecting previously unselected package libparse-debianchangelog-perl. Preparing to unpack .../52-libparse-debianchangelog-perl_1.2.0-13_all.deb ... Unpacking libparse-debianchangelog-perl (1.2.0-13) ... Selecting previously unselected package libpath-tiny-perl. Preparing to unpack .../53-libpath-tiny-perl_0.108-1_all.deb ... Unpacking libpath-tiny-perl (0.108-1) ... Selecting previously unselected package libtext-levenshtein-perl. Preparing to unpack .../54-libtext-levenshtein-perl_0.13-1_all.deb ... Unpacking libtext-levenshtein-perl (0.13-1) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../55-libtry-tiny-perl_0.30-1_all.deb ... Unpacking libtry-tiny-perl (0.30-1) ... Selecting previously unselected package libtype-tiny-perl. Preparing to unpack .../56-libtype-tiny-perl_1.004004-1_all.deb ... Unpacking libtype-tiny-perl (1.004004-1) ... Selecting previously unselected package libyaml-0-2:amd64. Preparing to unpack .../57-libyaml-0-2_0.2.1-1_amd64.deb ... Unpacking libyaml-0-2:amd64 (0.2.1-1) ... Selecting previously unselected package libyaml-libyaml-perl. Preparing to unpack .../58-libyaml-libyaml-perl_0.79+repack-2_amd64.deb ... Unpacking libyaml-libyaml-perl (0.79+repack-2) ... Selecting previously unselected package patchutils. Preparing to unpack .../59-patchutils_0.3.4-2_amd64.deb ... Unpacking patchutils (0.3.4-2) ... Selecting previously unselected package t1utils. Preparing to unpack .../60-t1utils_1.41-3_amd64.deb ... Unpacking t1utils (1.41-3) ... Selecting previously unselected package lintian. Preparing to unpack .../61-lintian_2.16.0_all.deb ... Unpacking lintian (2.16.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:armhf. Preparing to unpack .../62-sbuild-build-depends-lintian-dummy_0.invalid.0_armhf.deb ... Unpacking sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b1) ... Setting up libstruct-dumb-perl (0.09-1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libclass-method-modifiers-perl (2.12-1) ... Setting up liblist-compare-perl (0.53-1) ... Setting up libio-pty-perl (1:1.08-1.1+b5) ... Setting up libclone-perl (0.41-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.1-1) ... Setting up libssl1.1:amd64 (1.1.1c-1) ... Setting up libhtml-tagset-perl (3.20-3) ... Setting up libsqlite3-0:amd64 (3.29.0-1) ... Setting up libfuture-perl (0.41-1) ... Setting up libyaml-libyaml-perl (0.79+repack-2) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up perl-openssl-defaults:amd64 (3) ... Setting up libtext-levenshtein-perl (0.13-1) ... Setting up libassuan0:amd64 (2.5.3-7) ... Setting up libio-async-perl (0.74-1) ... Setting up patchutils (0.3.4-2) ... Setting up libdigest-hmac-perl (1.03+dfsg-2) ... Setting up libipc-system-simple-perl (1.25-4) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up t1utils (1.41-3) ... Setting up diffstat (1.62-1) ... Setting up libb-hooks-op-check-perl (0.22-1+b1) ... Setting up libipc-run-perl (20180523.0-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3000-2) ... Setting up libsub-name-perl (0.21-1+b3) ... Setting up libpath-tiny-perl (0.108-1) ... Setting up librole-tiny-perl (2.000006-1) ... Setting up libdevel-globaldestruction-perl (0.14-1) ... Setting up netbase (5.6) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006003-1) ... Setting up libexporter-tiny-perl (1.002001-1) ... Setting up libclass-accessor-perl (0.51-1) ... Setting up libnet-ip-perl (1.26-2) ... Setting up readline-common (8.0-2) ... Setting up liburi-perl (1.76-1) ... Setting up libnet-ssleay-perl (1.88-1) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b4) ... Setting up libreadline8:amd64 (8.0-2) ... Setting up libtype-tiny-perl (1.004004-1) ... Setting up libnet-dns-perl (1.20-1) ... Setting up libdevel-callchecker-perl (0.008-1) ... Setting up libhtml-parser-perl (3.72-3+b3) ... Setting up gpgconf (2.2.17-3) ... Setting up libio-socket-ssl-perl (2.066-1) ... Setting up gpg (2.2.17-3) ... Setting up libparams-classify-perl (0.015-1+b1) ... Setting up libcgi-pm-perl (4.44-1) ... Setting up libnet-smtp-ssl-perl (1.04-1) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libmailtools-perl (2.21-1) ... Setting up libparse-debianchangelog-perl (1.2.0-13) ... Setting up libemail-valid-perl (1.202-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.003004-2) ... Setting up lintian (2.16.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.28-10) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mafft_7.429-1_armhf.changes: ---------------------------- Format: 1.8 Date: Sat, 27 Jul 2019 12:56:27 +0200 Source: mafft Binary: mafft mafft-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 7.429-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.429-1) unstable; urgency=medium . * Team upload. * New upstream version * debhelper-compat 12 * Created with routine-update script. * Standards-Version: 4.4.0 Checksums-Sha1: d2050337244306770a7ee9d666b05412ae4751bb 8646836 mafft-dbgsym_7.429-1_armhf.deb e21d8838c89338f01e130e8edfa0a355f3068e4b 4531 mafft_7.429-1_armhf.buildinfo 54b3a28fc457cb292d7f4c56956809cd82323cc6 723012 mafft_7.429-1_armhf.deb Checksums-Sha256: ffbd345d9d7a878ba1b997c34866e083daedc5a216b6fb38ddcfdad20aee32b7 8646836 mafft-dbgsym_7.429-1_armhf.deb 98e2c979b84b8d906546a0750c028d73caf2ebdedc9d36e0e23cee695fe2af81 4531 mafft_7.429-1_armhf.buildinfo aee0700948a63d5d6efa01bc68cb97c3bea018bfbd62fab6f253129ce2dfff7e 723012 mafft_7.429-1_armhf.deb Files: 38e32e9334ce4a3cc1362c95b7fc7c7b 8646836 debug optional mafft-dbgsym_7.429-1_armhf.deb 52638f0074dcec854ef8f08383b71f15 4531 science optional mafft_7.429-1_armhf.buildinfo 3cdd65ed6640a64791675ca973f4efa1 723012 science optional mafft_7.429-1_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mafft Binary: mafft Architecture: armhf Version: 7.429-1 Checksums-Md5: 38e32e9334ce4a3cc1362c95b7fc7c7b 8646836 mafft-dbgsym_7.429-1_armhf.deb 3cdd65ed6640a64791675ca973f4efa1 723012 mafft_7.429-1_armhf.deb Checksums-Sha1: d2050337244306770a7ee9d666b05412ae4751bb 8646836 mafft-dbgsym_7.429-1_armhf.deb 54b3a28fc457cb292d7f4c56956809cd82323cc6 723012 mafft_7.429-1_armhf.deb Checksums-Sha256: ffbd345d9d7a878ba1b997c34866e083daedc5a216b6fb38ddcfdad20aee32b7 8646836 mafft-dbgsym_7.429-1_armhf.deb aee0700948a63d5d6efa01bc68cb97c3bea018bfbd62fab6f253129ce2dfff7e 723012 mafft_7.429-1_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Mon, 29 Jul 2019 12:04:33 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190727-1), binutils-common (= 2.32.51.20190727-1), binutils-x86-64-linux-gnu (= 2.32.51.20190727-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3), cpp (= 4:8.3.0-1), cpp-8 (= 8.3.0-19), dash (= 0.5.10.2-6), debconf (= 1.5.72), debhelper (= 12.2.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.3.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.12.20190723-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:8.3.0-1), g++-8 (= 8.3.0-19), gcc (= 4:8.3.0-1), gcc-8 (= 8.3.0-19), gcc-8-base (= 8.3.0-19), gcc-9-base (= 9.1.0-10), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.1.0-10), libatomic1 (= 9.1.0-10), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190727-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.9.1-2), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2), libcc1-0 (= 9.1.0-10), libcroco3 (= 0.6.12-3), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.3.0-1), libgcc-8-dev (= 8.3.0-19), libgcc1 (= 1:9.1.0-10), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-4+b1), libgdbm6 (= 1.18.1-4+b1), libglib2.0-0 (= 2.60.6-1), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.1.0-10), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.1.0-10), liblsan0 (= 9.1.0-10), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-19), libncurses6 (= 6.1+20190713-1), libncursesw6 (= 6.1+20190713-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5), libpcre3 (= 2:8.39-12), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.1.0-10), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-8-dev (= 8.3.0-19), libstdc++6 (= 9.1.0-10), libsub-override-perl (= 0.09-2), libsystemd0 (= 241-7), libtinfo6 (= 6.1+20190713-1), libtool (= 2.4.6-10), libtsan0 (= 9.1.0-10), libubsan1 (= 9.1.0-10), libuchardet0 (= 0.0.6-3), libudev1 (= 241-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 4.19.37-6), login (= 1:4.7-2), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.5-2), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190713-1), ncurses-bin (= 6.1+20190713-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-2), tar (= 1.30+dfsg-6), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1564224987" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mafft-dbgsym_7.429-1_armhf.deb ------------------------------ new Debian package, version 2.0. size 8646836 bytes: control archive=1996 bytes. 1594 bytes, 12 lines control 3371 bytes, 32 lines md5sums Package: mafft-dbgsym Source: mafft Version: 7.429-1 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 10932 Depends: mafft (= 7.429-1) Section: debug Priority: optional Description: debug symbols for mafft Build-Ids: 04690274a01f5fd633bbf91d931e0022191925b6 0ed41058c0ea4f4a06d083046105391aa378d1c1 0f47623a9c7302f219db63117fb929ea6a598250 1d2d3589aac6008a5b1c4047326fed7c5b91e5a7 1ee599f982c8dc8314c09e493c2c2c1e4c8e58d4 22c263c9ebcc02712f0bfb7bce36cc01df0ee1eb 2755a0784939ff606f211aa4b23ec5424d107928 2ec33e4f3342b819a25695ffc176832331ae97d1 4cb3d669df665ec5e9409d8fafe365b53b118ae7 533da53dbe6f590ce4cd37e223f46f8ca0ffe2f3 53566dd05d56a44c53233ff68fb9a98af55e19d4 54fb2ea1d90db9408bd0394803b61cbbfbc4868e 592739bfdcacea261891bc73a631f6440d28226d 5cba36c1b36e7462b08c4d463298e716b766ab22 639444347aff24d64fd85a4f816abc80998c8bba 6bbbc4d960b711b0ba45823af180d6296cfef29c 6dd8d558f211007e8e4dbf227ed93aa3da733bf6 771767772d9eb601b4b6c04fc84691b5d3c12208 77f443849548a1167cb54e54912d6d37d3b45feb 8024da990500b41794efa8a26800a12633df9ad0 84ff82f0fdcc770f06cc46327ed2f0a0f8824833 8a65afebea72d7e29315fcc4893e594b83b7dad8 9370ce058d6e25088193e418a4300b379579296c 94aca8a6f1decea627996372032b1944fe854dc6 c53820df90fbdacf912ec463acbb8bd90792ebc6 c6dc0d9ed028ff67d1971d3489f3a088993e2dc4 e392ee9c109756e00dbce836fa544dd3a8cb0848 f03455c7cdef678780c8e534fe10e701098da840 f3dbd5957379e6e49886b130baead707925460d1 f754138b287b8b7e05517f550f29e328071928dd fa3fd92b067fb8c997aaa67a25a370a384f1712b drwxr-xr-x root/root 0 2019-07-27 10:56 ./ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/04/ -rw-r--r-- root/root 560876 2019-07-27 10:56 ./usr/lib/debug/.build-id/04/690274a01f5fd633bbf91d931e0022191925b6.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/0e/ -rw-r--r-- root/root 544024 2019-07-27 10:56 ./usr/lib/debug/.build-id/0e/d41058c0ea4f4a06d083046105391aa378d1c1.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/0f/ -rw-r--r-- root/root 286200 2019-07-27 10:56 ./usr/lib/debug/.build-id/0f/47623a9c7302f219db63117fb929ea6a598250.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/1d/ -rw-r--r-- root/root 328952 2019-07-27 10:56 ./usr/lib/debug/.build-id/1d/2d3589aac6008a5b1c4047326fed7c5b91e5a7.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/1e/ -rw-r--r-- root/root 288284 2019-07-27 10:56 ./usr/lib/debug/.build-id/1e/e599f982c8dc8314c09e493c2c2c1e4c8e58d4.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/22/ -rw-r--r-- root/root 543240 2019-07-27 10:56 ./usr/lib/debug/.build-id/22/c263c9ebcc02712f0bfb7bce36cc01df0ee1eb.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/27/ -rw-r--r-- root/root 142080 2019-07-27 10:56 ./usr/lib/debug/.build-id/27/55a0784939ff606f211aa4b23ec5424d107928.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/2e/ -rw-r--r-- root/root 516896 2019-07-27 10:56 ./usr/lib/debug/.build-id/2e/c33e4f3342b819a25695ffc176832331ae97d1.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/4c/ -rw-r--r-- root/root 8240 2019-07-27 10:56 ./usr/lib/debug/.build-id/4c/b3d669df665ec5e9409d8fafe365b53b118ae7.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/53/ -rw-r--r-- root/root 5868 2019-07-27 10:56 ./usr/lib/debug/.build-id/53/3da53dbe6f590ce4cd37e223f46f8ca0ffe2f3.debug -rw-r--r-- root/root 310992 2019-07-27 10:56 ./usr/lib/debug/.build-id/53/566dd05d56a44c53233ff68fb9a98af55e19d4.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/54/ -rw-r--r-- root/root 308448 2019-07-27 10:56 ./usr/lib/debug/.build-id/54/fb2ea1d90db9408bd0394803b61cbbfbc4868e.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/59/ -rw-r--r-- root/root 583340 2019-07-27 10:56 ./usr/lib/debug/.build-id/59/2739bfdcacea261891bc73a631f6440d28226d.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/5c/ -rw-r--r-- root/root 115984 2019-07-27 10:56 ./usr/lib/debug/.build-id/5c/ba36c1b36e7462b08c4d463298e716b766ab22.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/63/ -rw-r--r-- root/root 584808 2019-07-27 10:56 ./usr/lib/debug/.build-id/63/9444347aff24d64fd85a4f816abc80998c8bba.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/6b/ -rw-r--r-- root/root 514704 2019-07-27 10:56 ./usr/lib/debug/.build-id/6b/bbc4d960b711b0ba45823af180d6296cfef29c.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/6d/ -rw-r--r-- root/root 621936 2019-07-27 10:56 ./usr/lib/debug/.build-id/6d/d8d558f211007e8e4dbf227ed93aa3da733bf6.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/77/ -rw-r--r-- root/root 115636 2019-07-27 10:56 ./usr/lib/debug/.build-id/77/1767772d9eb601b4b6c04fc84691b5d3c12208.debug -rw-r--r-- root/root 7964 2019-07-27 10:56 ./usr/lib/debug/.build-id/77/f443849548a1167cb54e54912d6d37d3b45feb.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/80/ -rw-r--r-- root/root 514412 2019-07-27 10:56 ./usr/lib/debug/.build-id/80/24da990500b41794efa8a26800a12633df9ad0.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/84/ -rw-r--r-- root/root 538040 2019-07-27 10:56 ./usr/lib/debug/.build-id/84/ff82f0fdcc770f06cc46327ed2f0a0f8824833.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 328540 2019-07-27 10:56 ./usr/lib/debug/.build-id/8a/65afebea72d7e29315fcc4893e594b83b7dad8.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/93/ -rw-r--r-- root/root 311448 2019-07-27 10:56 ./usr/lib/debug/.build-id/93/70ce058d6e25088193e418a4300b379579296c.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/94/ -rw-r--r-- root/root 340540 2019-07-27 10:56 ./usr/lib/debug/.build-id/94/aca8a6f1decea627996372032b1944fe854dc6.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/c5/ -rw-r--r-- root/root 287372 2019-07-27 10:56 ./usr/lib/debug/.build-id/c5/3820df90fbdacf912ec463acbb8bd90792ebc6.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/c6/ -rw-r--r-- root/root 327992 2019-07-27 10:56 ./usr/lib/debug/.build-id/c6/dc0d9ed028ff67d1971d3489f3a088993e2dc4.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/e3/ -rw-r--r-- root/root 327548 2019-07-27 10:56 ./usr/lib/debug/.build-id/e3/92ee9c109756e00dbce836fa544dd3a8cb0848.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/f0/ -rw-r--r-- root/root 288224 2019-07-27 10:56 ./usr/lib/debug/.build-id/f0/3455c7cdef678780c8e534fe10e701098da840.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/f3/ -rw-r--r-- root/root 572668 2019-07-27 10:56 ./usr/lib/debug/.build-id/f3/dbd5957379e6e49886b130baead707925460d1.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 571220 2019-07-27 10:56 ./usr/lib/debug/.build-id/f7/54138b287b8b7e05517f550f29e328071928dd.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.build-id/fa/ -rw-r--r-- root/root 313828 2019-07-27 10:56 ./usr/lib/debug/.build-id/fa/3fd92b067fb8c997aaa67a25a370a384f1712b.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/ -rw-r--r-- root/root 26648 2019-07-27 10:56 ./usr/lib/debug/.dwz/arm-linux-gnueabihf/mafft.debug drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/doc/ lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/doc/mafft-dbgsym -> mafft mafft_7.429-1_armhf.deb ----------------------- new Debian package, version 2.0. size 723012 bytes: control archive=2340 bytes. 1384 bytes, 30 lines control 3783 bytes, 54 lines md5sums Package: mafft Version: 7.429-1 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 7165 Depends: libc6 (>= 2.7), perl:any Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Section: science Priority: optional Homepage: http://mafft.cbrc.jp/alignment/software/ Description: Multiple alignment program for amino acid or nucleotide sequences MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm). drwxr-xr-x root/root 0 2019-07-27 10:56 ./ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/bin/ lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/bin/mafft -> ../lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/bin/mafft-homologs -> ../lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/bin/mafft-profile -> ../lib/mafft/bin/mafft-profile drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/mafft/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/ lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/einsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/fftns -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/fftnsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/ginsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/linsi -> mafft -rwxr-xr-x root/root 104699 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-distance -> ../lib/mafft/mafft-distance lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-einsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-fftns -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-fftnsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-ginsi -> mafft -rwxr-xr-x root/root 11551 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-linsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-nwns -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-nwnsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-profile -> ../lib/mafft/mafft-profile lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-qinsi -> mafft -rwxr-xr-x root/root 7788 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-sparsecore.rb lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/mafft-xinsi -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/nwns -> mafft lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/lib/mafft/bin/nwnsi -> mafft drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/mafft/lib/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/ -rwxr-xr-x root/root 349748 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/addsingle -rwxr-xr-x root/root 198196 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/contrafoldwrap -rwxr-xr-x root/root 55004 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/countlen -rwxr-xr-x root/root 357940 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/disttbfast -rwxr-xr-x root/root 206388 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/dndblast -rwxr-xr-x root/root 206388 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/dndfast7 -rwxr-xr-x root/root 198204 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/dndpre -rwxr-xr-x root/root 362036 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/dvtditr -rwxr-xr-x root/root 103988 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/f2cl -rwxr-xr-x root/root 321076 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/getlag -rwxr-xr-x root/root 5672 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/hex2maffttext -rwxr-xr-x root/root 206388 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/mafft-distance -rwxr-xr-x root/root 321076 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/mafft-profile -rwxr-xr-x root/root 10475 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/mafftash_premafft.pl -rwxr-xr-x root/root 5672 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/maffttext2hex -rwxr-xr-x root/root 333380 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/makedirectionlist -rwxr-xr-x root/root 202292 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/mccaskillwrap -rwxr-xr-x root/root 214580 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/multi2hat3s -rwxr-xr-x root/root 357940 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/nodepair -rwxr-xr-x root/root 329268 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/pairash -rwxr-xr-x root/root 345652 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/pairlocalalign -rwxr-xr-x root/root 153308 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/regtable2seq -rwxr-xr-x root/root 149212 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/replaceu -rwxr-xr-x root/root 153308 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/restoreu -rwxr-xr-x root/root 198196 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/score -rwxr-xr-x root/root 15541 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/seekquencer_premafft.pl -rwxr-xr-x root/root 55004 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/seq2regtable -rwxr-xr-x root/root 321076 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/setcore -rwxr-xr-x root/root 153316 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/setdirection -rwxr-xr-x root/root 206388 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/sextet5 -rwxr-xr-x root/root 337460 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/splittbfast -rwxr-xr-x root/root 386612 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/tbfast -rwxr-xr-x root/root 5672 2019-07-27 10:56 ./usr/lib/mafft/lib/mafft/version drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/doc/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/doc/mafft/ -rw-r--r-- root/root 3634 2019-07-27 10:56 ./usr/share/doc/mafft/changelog.Debian.gz -rw-r--r-- root/root 1931 2019-07-27 10:56 ./usr/share/doc/mafft/copyright drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/doc/mafft/test/ -rw-r--r-- root/root 16616 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample -rw-r--r-- root/root 30112 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.dpparttree -rw-r--r-- root/root 28816 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.fftns2 -rw-r--r-- root/root 28996 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.fftnsi -rw-r--r-- root/root 29896 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.gins1 -rw-r--r-- root/root 29572 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.ginsi -rw-r--r-- root/root 41380 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.ginsi.allowshift -rw-r--r-- root/root 28888 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.lins1 -rw-r--r-- root/root 29500 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.linsi -rw-r--r-- root/root 30112 2019-07-01 06:59 ./usr/share/doc/mafft/test/sample.parttree -rw-r--r-- root/root 1502 2019-07-01 06:59 ./usr/share/doc/mafft/test/samplerna -rw-r--r-- root/root 1916 2019-07-01 06:59 ./usr/share/doc/mafft/test/samplerna.qinsi -rw-r--r-- root/root 1916 2019-07-01 06:59 ./usr/share/doc/mafft/test/samplerna.xinsi -rw-r--r-- root/root 725 2019-07-01 06:59 ./usr/share/doc/mafft/test/script drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/man/ drwxr-xr-x root/root 0 2019-07-27 10:56 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/ginsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-ginsi.1.gz -> mafft.1.gz -rw-r--r-- root/root 2130 2019-07-27 10:56 ./usr/share/man/man1/mafft-homologs.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2019-07-27 10:56 ./usr/share/man/man1/mafft-profile.1.gz -> mafft.1.gz -rw-r--r-- root/root 4421 2019-07-27 10:56 ./usr/share/man/man1/mafft.1.gz +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 107212 Build-Time: 70 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 25 Job: mafft_7.429-1 Lintian: pass Machine Architecture: amd64 Package: mafft Package-Time: 106 Source-Version: 7.429-1 Space: 107212 Status: successful Version: 7.429-1 -------------------------------------------------------------------------------- Finished at 2019-07-29T12:04:33Z Build needed 00:01:46, 107212k disk space