sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | mafft 7.475-1 (armel) Tue, 08 Dec 2020 23:44:41 +0000 | +==============================================================================+ Package: mafft Version: 7.475-1 Source Version: 7.475-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-accd2715-160e-47ce-8d44-301c3398ecd7' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-Jiib3w/resolver-tYxQhg' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [37.0 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [37.0 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-08-0803.07.pdiff [8541 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-08-1405.29.pdiff [22.0 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-08-2003.46.pdiff [24.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-08-0803.07.pdiff [25.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-08-1405.29.pdiff [32.3 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-08-2003.46.pdiff [22.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main Sources 2020-12-08-2003.46.pdiff [24.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-12-08-2003.46.pdiff [22.9 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main armel Packages [8207 kB] Fetched 8570 kB in 2s (5401 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: bash cpp-10 gcc-10 gcc-10-base libasan6 libatomic1 libcc1-0 libgcc-10-dev libgcc-s1 libgomp1 libitm1 liblsan0 libquadmath0 libstdc++6 libtsan0 libubsan1 16 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 100 MB of archives. After this operation, 44.0 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 bash amd64 5.1-1 [1416 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libcc1-0 amd64 10.2.1-1 [46.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1 amd64 10.2.1-1 [100 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1 amd64 10.2.1-1 [25.8 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1 amd64 10.2.1-1 [9016 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6 amd64 10.2.1-1 [2062 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0 amd64 10.2.1-1 [828 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0 amd64 10.2.1-1 [2000 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1 amd64 10.2.1-1 [777 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libquadmath0 amd64 10.2.1-1 [145 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev amd64 10.2.1-1 [2325 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10 amd64 10.2.1-1 [48.7 MB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10 amd64 10.2.1-1 [41.3 MB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-base amd64 10.2.1-1 [201 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6 amd64 10.2.1-1 [492 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1 amd64 10.2.1-1 [41.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 100 MB in 1s (137 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10439 files and directories currently installed.) Preparing to unpack .../archives/bash_5.1-1_amd64.deb ... Unpacking bash (5.1-1) over (5.1~rc3-1) ... Setting up bash (5.1-1) ... update-alternatives: using /usr/share/man/man7/bash-builtins.7.gz to provide /usr/share/man/man7/builtins.7.gz (builtins.7.gz) in auto mode (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10439 files and directories currently installed.) Preparing to unpack .../00-libcc1-0_10.2.1-1_amd64.deb ... Unpacking libcc1-0:amd64 (10.2.1-1) over (10.2.0-23) ... Preparing to unpack .../01-libgomp1_10.2.1-1_amd64.deb ... Unpacking libgomp1:amd64 (10.2.1-1) over (10.2.0-23) ... Preparing to unpack .../02-libitm1_10.2.1-1_amd64.deb ... Unpacking libitm1:amd64 (10.2.1-1) over (10.2.0-23) ... Preparing to unpack .../03-libatomic1_10.2.1-1_amd64.deb ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10439 files and directories currently installed.) Preparing to unpack .../libgcc-s1_10.2.1-1_amd64.deb ... Unpacking libgcc-s1:amd64 (10.2.1-1) over (10.2.0-23) ... Setting up libgcc-s1:amd64 (10.2.1-1) ... Setting up libgomp1:amd64 (10.2.1-1) ... Setting up libasan6:amd64 (10.2.1-1) ... Setting up libquadmath0:amd64 (10.2.1-1) ... Setting up libatomic1:amd64 (10.2.1-1) ... Setting up libubsan1:amd64 (10.2.1-1) ... Setting up libcc1-0:amd64 (10.2.1-1) ... Setting up liblsan0:amd64 (10.2.1-1) ... Setting up cpp-10 (10.2.1-1) ... Setting up libitm1:amd64 (10.2.1-1) ... Setting up libtsan0:amd64 (10.2.1-1) ... Setting up libgcc-10-dev:amd64 (10.2.1-1) ... Setting up gcc-10 (10.2.1-1) ... Processing triggers for libc-bin (2.31-5) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mafft' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mafft.git Please use: git clone https://salsa.debian.org/med-team/mafft.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 624 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main mafft 7.475-1 (dsc) [1973 B] Get:2 http://debian.oregonstate.edu/debian unstable/main mafft 7.475-1 (tar) [615 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main mafft 7.475-1 (diff) [7300 B] Fetched 624 kB in 1s (1050 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mafft-Jiib3w/mafft-7.475' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-Jiib3w' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [403 B] Get:5 copy:/<>/apt_archive ./ Packages [492 B] Fetched 1852 B in 0s (75.7 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-10-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-arm-linux-gnueabi gcc-10-arm-linux-gnueabi-base gcc-10-base:armel gcc-10-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libgssapi-krb5-2:armel libicu67 libio-string-perl libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armel libnsl2 libnsl2:armel libperl5.32 libpipeline1 libsigsegv2 libssl1.1 libssl1.1:armel libstdc++-10-dev libstdc++-10-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:armel libtirpc3 libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel glibc-doc manpages-dev:armel gnupg git bzr krb5-doc krb5-user krb5-doc:armel krb5-user:armel libstdc++-10-doc libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx libidn2-0:armel libnss-nis:armel libnss-nisplus:armel libfile-fcntllock-perl libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs krb5-locales krb5-locales:armel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdextrautils build-essential cpp-10-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-10-arm-linux-gnueabi gcc-10-arm-linux-gnueabi-base gcc-10-base:armel gcc-10-cross-base gcc-9-base:armel gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan6-armel-cross libatomic1:armel libatomic1-armel-cross libc6:armel libc6-armel-cross libc6-dev libc6-dev:armel libc6-dev-armel-cross libcom-err2:armel libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:armel libcrypt1:armel libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-armel-cross libgcc-9-dev:armel libgcc-s1:armel libgcc-s1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgssapi-krb5-2 libgssapi-krb5-2:armel libicu67 libio-string-perl libk5crypto3 libk5crypto3:armel libkeyutils1 libkeyutils1:armel libkrb5-3 libkrb5-3:armel libkrb5support0 libkrb5support0:armel liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev libnsl-dev:armel libnsl2 libnsl2:armel libperl5.32 libpipeline1 libsigsegv2 libssl1.1 libssl1.1:armel libstdc++-10-dev libstdc++-10-dev-armel-cross libstdc++-9-dev:armel libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libtirpc-common libtirpc-dev libtirpc-dev:armel libtirpc3 libtirpc3:armel libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db perl perl-modules-5.32 po-debconf sbuild-build-depends-main-dummy:armel sensible-utils ucf 0 upgraded, 119 newly installed, 0 to remove and 0 not upgraded. Need to get 247 MB of archives. After this operation, 1066 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-2 [140 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-5 [920 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.3-2 [1314 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.0-5 [2821 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.0-5 [4119 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.0-5 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main armel gcc-10-base armel 10.2.1-1 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.3.0-19 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-1 [814 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.35.1-4 [2779 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5support0 amd64 1.18.3-4 [65.1 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libk5crypto3 amd64 1.18.3-4 [113 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libkeyutils1 amd64 1.6.1-2 [15.4 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1h-1 [1550 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libkrb5-3 amd64 1.18.3-4 [362 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libgssapi-krb5-2 amd64 1.18.3-4 [165 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-common all 1.2.6-3 [13.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc3 amd64 1.2.6-3 [83.4 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.2.6-3 [190 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-5 [2342 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-1 [1741 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-1 [44.7 MB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.0-1 [1644 B] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.5 [1473 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.5 [1909 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabi-base amd64 10.2.0-19cross1 [200 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-arm-linux-gnueabi amd64 10.2.0-19cross1 [44.1 MB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:10.2.0-1 [16.8 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3.1 [39.9 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base all 10.2.0-19cross1 [197 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.31-1cross2 [1136 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-armel-cross all 10.2.0-19cross1 [38.3 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 10.2.0-19cross1 [85.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 10.2.0-19cross1 [8828 B] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libasan6-armel-cross all 10.2.0-19cross1 [292 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 10.2.0-19cross1 [369 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 10.2.0-19cross1 [114 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-armel-cross all 10.2.0-19cross1 [688 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-arm-linux-gnueabi amd64 10.2.0-19cross1 [50.3 MB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:10.2.0-1 [1456 B] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.7.6-1cross2 [1198 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.31-1cross2 [1936 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-armel-cross all 10.2.0-19cross1 [1751 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-arm-linux-gnueabi amd64 10.2.0-19cross1 [47.1 MB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:10.2.0-1 [1176 B] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-5 [8625 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3.1 [38.9 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3.1 [49.9 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3 [188 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.9.0-1 [25.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.9.0-1 [15.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.182-1 [166 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20201015-2 [173 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.66.3-2 [1366 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3 [1009 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main armel libgcc-s1 armel 10.2.1-1 [38.3 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main armel libcrypt1 armel 1:4.4.17-1 [96.3 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.31-5 [2336 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.3.0-19 [347 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 10.2.1-1 [9048 B] Get:101 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.9.11-1 [1199 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libcrypt-dev armel 1:4.4.17-1 [115 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libcom-err2 armel 1.45.6-1 [71.0 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main armel libkrb5support0 armel 1.18.3-4 [62.1 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main armel libk5crypto3 armel 1.18.3-4 [108 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main armel libkeyutils1 armel 1.6.1-2 [14.5 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main armel libssl1.1 armel 1.1.1h-1 [1274 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main armel libkrb5-3 armel 1.18.3-4 [315 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main armel libgssapi-krb5-2 armel 1.18.3-4 [142 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main armel libtirpc3 armel 1.2.6-3 [71.5 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main armel libnsl2 armel 1.3.0-2 [33.0 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main armel libtirpc-dev armel 1.2.6-3 [182 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main armel libnsl-dev armel 1.3.0-2 [61.7 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.31-5 [1929 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 10.2.1-1 [87.1 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 10.2.1-1 [409 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 10.2.1-1 [746 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.3.0-19 [643 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.3.0-19 [1749 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 247 MB in 2s (129 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10439 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-2_amd64.deb ... Unpacking bsdextrautils (2.36.1-2) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-5_amd64.deb ... Unpacking groff-base (1.22.4-5) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.3-2_amd64.deb ... Unpacking man-db (2.9.3-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.0-5_all.deb ... Unpacking perl-modules-5.32 (5.32.0-5) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.0-5_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.0-5) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.0-5_amd64.deb ... Unpacking perl (5.32.0-5) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:armel. Preparing to unpack .../009-gcc-10-base_10.2.1-1_armel.deb ... Unpacking gcc-10-base:armel (10.2.1-1) ... Selecting previously unselected package gcc-9-base:armel. Preparing to unpack .../010-gcc-9-base_9.3.0-19_armel.deb ... Unpacking gcc-9-base:armel (9.3.0-19) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../011-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../012-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../013-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../014-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../015-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../016-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../017-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../018-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../019-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../020-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../021-automake_1%3a1.16.3-1_all.deb ... Unpacking automake (1:1.16.3-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../022-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-arm-linux-gnueabi. Preparing to unpack .../023-binutils-arm-linux-gnueabi_2.35.1-4_amd64.deb ... Unpacking binutils-arm-linux-gnueabi (2.35.1-4) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../024-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libkrb5support0:amd64. Preparing to unpack .../025-libkrb5support0_1.18.3-4_amd64.deb ... Unpacking libkrb5support0:amd64 (1.18.3-4) ... Selecting previously unselected package libk5crypto3:amd64. Preparing to unpack .../026-libk5crypto3_1.18.3-4_amd64.deb ... Unpacking libk5crypto3:amd64 (1.18.3-4) ... Selecting previously unselected package libkeyutils1:amd64. Preparing to unpack .../027-libkeyutils1_1.6.1-2_amd64.deb ... Unpacking libkeyutils1:amd64 (1.6.1-2) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../028-libssl1.1_1.1.1h-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1h-1) ... Selecting previously unselected package libkrb5-3:amd64. Preparing to unpack .../029-libkrb5-3_1.18.3-4_amd64.deb ... Unpacking libkrb5-3:amd64 (1.18.3-4) ... Selecting previously unselected package libgssapi-krb5-2:amd64. Preparing to unpack .../030-libgssapi-krb5-2_1.18.3-4_amd64.deb ... Unpacking libgssapi-krb5-2:amd64 (1.18.3-4) ... Selecting previously unselected package libtirpc-common. Preparing to unpack .../031-libtirpc-common_1.2.6-3_all.deb ... Unpacking libtirpc-common (1.2.6-3) ... Selecting previously unselected package libtirpc3:amd64. Preparing to unpack .../032-libtirpc3_1.2.6-3_amd64.deb ... Unpacking libtirpc3:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl2:amd64. Preparing to unpack .../033-libnsl2_1.3.0-2_amd64.deb ... Unpacking libnsl2:amd64 (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../034-libtirpc-dev_1.2.6-3_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.2.6-3) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../035-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../036-libc6-dev_2.31-5_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-5) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../037-libstdc++-10-dev_10.2.1-1_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-1) ... Selecting previously unselected package g++-10. Preparing to unpack .../038-g++-10_10.2.1-1_amd64.deb ... Unpacking g++-10 (10.2.1-1) ... Selecting previously unselected package g++. Preparing to unpack .../039-g++_4%3a10.2.0-1_amd64.deb ... Unpacking g++ (4:10.2.0-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../040-libdpkg-perl_1.20.5_all.deb ... Unpacking libdpkg-perl (1.20.5) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../041-dpkg-dev_1.20.5_all.deb ... Unpacking dpkg-dev (1.20.5) ... Selecting previously unselected package build-essential. Preparing to unpack .../042-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-10-arm-linux-gnueabi-base:amd64. Preparing to unpack .../043-gcc-10-arm-linux-gnueabi-base_10.2.0-19cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabi-base:amd64 (10.2.0-19cross1) ... Selecting previously unselected package cpp-10-arm-linux-gnueabi. Preparing to unpack .../044-cpp-10-arm-linux-gnueabi_10.2.0-19cross1_amd64.deb ... Unpacking cpp-10-arm-linux-gnueabi (10.2.0-19cross1) ... Selecting previously unselected package cpp-arm-linux-gnueabi. Preparing to unpack .../045-cpp-arm-linux-gnueabi_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-arm-linux-gnueabi (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../046-cross-config_2.6.15-3.1_all.deb ... Unpacking cross-config (2.6.15-3.1) ... Selecting previously unselected package gcc-10-cross-base. Preparing to unpack .../047-gcc-10-cross-base_10.2.0-19cross1_all.deb ... Unpacking gcc-10-cross-base (10.2.0-19cross1) ... Selecting previously unselected package libc6-armel-cross. Preparing to unpack .../048-libc6-armel-cross_2.31-1cross2_all.deb ... Unpacking libc6-armel-cross (2.31-1cross2) ... Selecting previously unselected package libgcc-s1-armel-cross. Preparing to unpack .../049-libgcc-s1-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libgcc-s1-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libgomp1-armel-cross. Preparing to unpack .../050-libgomp1-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libgomp1-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libatomic1-armel-cross. Preparing to unpack .../051-libatomic1-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libatomic1-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libasan6-armel-cross. Preparing to unpack .../052-libasan6-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libasan6-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libstdc++6-armel-cross. Preparing to unpack .../053-libstdc++6-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libstdc++6-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libubsan1-armel-cross. Preparing to unpack .../054-libubsan1-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libubsan1-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package libgcc-10-dev-armel-cross. Preparing to unpack .../055-libgcc-10-dev-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libgcc-10-dev-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package gcc-10-arm-linux-gnueabi. Preparing to unpack .../056-gcc-10-arm-linux-gnueabi_10.2.0-19cross1_amd64.deb ... Unpacking gcc-10-arm-linux-gnueabi (10.2.0-19cross1) ... Selecting previously unselected package gcc-arm-linux-gnueabi. Preparing to unpack .../057-gcc-arm-linux-gnueabi_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-arm-linux-gnueabi (4:10.2.0-1) ... Selecting previously unselected package linux-libc-dev-armel-cross. Preparing to unpack .../058-linux-libc-dev-armel-cross_5.7.6-1cross2_all.deb ... Unpacking linux-libc-dev-armel-cross (5.7.6-1cross2) ... Selecting previously unselected package libc6-dev-armel-cross. Preparing to unpack .../059-libc6-dev-armel-cross_2.31-1cross2_all.deb ... Unpacking libc6-dev-armel-cross (2.31-1cross2) ... Selecting previously unselected package libstdc++-10-dev-armel-cross. Preparing to unpack .../060-libstdc++-10-dev-armel-cross_10.2.0-19cross1_all.deb ... Unpacking libstdc++-10-dev-armel-cross (10.2.0-19cross1) ... Selecting previously unselected package g++-10-arm-linux-gnueabi. Preparing to unpack .../061-g++-10-arm-linux-gnueabi_10.2.0-19cross1_amd64.deb ... Unpacking g++-10-arm-linux-gnueabi (10.2.0-19cross1) ... Selecting previously unselected package g++-arm-linux-gnueabi. Preparing to unpack .../062-g++-arm-linux-gnueabi_4%3a10.2.0-1_amd64.deb ... Unpacking g++-arm-linux-gnueabi (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../063-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../064-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../065-libicu67_67.1-5_amd64.deb ... Unpacking libicu67:amd64 (67.1-5) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../066-libxml2_2.9.10+dfsg-6.3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Selecting previously unselected package libxml-namespacesupport-perl. 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Unpacking libtirpc3:armel (1.2.6-3) ... Selecting previously unselected package libnsl2:armel. Preparing to unpack .../109-libnsl2_1.3.0-2_armel.deb ... Unpacking libnsl2:armel (1.3.0-2) ... Selecting previously unselected package libtirpc-dev:armel. Preparing to unpack .../110-libtirpc-dev_1.2.6-3_armel.deb ... Unpacking libtirpc-dev:armel (1.2.6-3) ... Selecting previously unselected package libnsl-dev:armel. Preparing to unpack .../111-libnsl-dev_1.3.0-2_armel.deb ... Unpacking libnsl-dev:armel (1.3.0-2) ... Selecting previously unselected package libc6-dev:armel. Preparing to unpack .../112-libc6-dev_2.31-5_armel.deb ... Unpacking libc6-dev:armel (2.31-5) ... Selecting previously unselected package libgomp1:armel. Preparing to unpack .../113-libgomp1_10.2.1-1_armel.deb ... Unpacking libgomp1:armel (10.2.1-1) ... Selecting previously unselected package libstdc++6:armel. Preparing to unpack .../114-libstdc++6_10.2.1-1_armel.deb ... Unpacking libstdc++6:armel (10.2.1-1) ... Selecting previously unselected package libubsan1:armel. Preparing to unpack .../115-libubsan1_10.2.1-1_armel.deb ... Unpacking libubsan1:armel (10.2.1-1) ... Selecting previously unselected package libgcc-9-dev:armel. Preparing to unpack .../116-libgcc-9-dev_9.3.0-19_armel.deb ... Unpacking libgcc-9-dev:armel (9.3.0-19) ... Selecting previously unselected package libstdc++-9-dev:armel. Preparing to unpack .../117-libstdc++-9-dev_9.3.0-19_armel.deb ... Unpacking libstdc++-9-dev:armel (9.3.0-19) ... Selecting previously unselected package sbuild-build-depends-main-dummy:armel. Preparing to unpack .../118-sbuild-build-depends-main-dummy_0.invalid.0_armel.deb ... Unpacking sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-1) ... Setting up libpipeline1:amd64 (1.5.3-1) ... Setting up libkeyutils1:amd64 (1.6.1-2) ... Setting up binutils-arm-linux-gnueabi (2.35.1-4) ... Setting up bsdextrautils (2.36.1-2) ... update-alternatives: using /usr/bin/write.ul to provide /usr/bin/write (write) in auto mode Setting up libicu67:amd64 (67.1-5) ... Setting up libmagic-mgc (1:5.39-3) ... Setting up libglib2.0-0:amd64 (2.66.3-2) ... No schema files found: doing nothing. Setting up libssl1.1:amd64 (1.1.1h-1) ... Setting up libtirpc-common (1.2.6-3) ... Setting up perl-modules-5.32 (5.32.0-5) ... Setting up libmagic1:amd64 (1:5.39-3) ... Setting up linux-libc-dev:armel (5.9.11-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.39-3) ... Setting up gcc-10-arm-linux-gnueabi-base:amd64 (10.2.0-19cross1) ... Setting up libkrb5support0:amd64 (1.18.3-4) ... Setting up linux-libc-dev-armel-cross (5.7.6-1cross2) ... Setting up gcc-10-base:armel (10.2.1-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3.1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up autopoint (0.19.8.1-10) ... Setting up libk5crypto3:amd64 (1.18.3-4) ... Setting up libperl5.32:amd64 (5.32.0-5) ... Setting up gcc-10-cross-base (10.2.0-19cross1) ... Setting up libc6-armel-cross (2.31-1cross2) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libkrb5-3:amd64 (1.18.3-4) ... Setting up libc6-dev-armel-cross (2.31-1cross2) ... Setting up libelf1:amd64 (0.182-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up cpp-10-arm-linux-gnueabi (10.2.0-19cross1) ... Setting up gcc-9-base:armel (9.3.0-19) ... Setting up libgomp1-armel-cross (10.2.0-19cross1) ... Setting up libgcc-s1-armel-cross (10.2.0-19cross1) ... Setting up m4 (1.4.18-4) ... Setting up libstdc++6-armel-cross (10.2.0-19cross1) ... Setting up libatomic1-armel-cross (10.2.0-19cross1) ... Setting up perl (5.32.0-5) ... Setting up cpp-arm-linux-gnueabi (4:10.2.0-1) ... Setting up libubsan1-armel-cross (10.2.0-19cross1) ... Setting up libgssapi-krb5-2:amd64 (1.18.3-4) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.5) ... Setting up autoconf (2.69-11.1) ... Setting up dwz (0.13+20201015-2) ... Setting up groff-base (1.22.4-5) ... Setting up libsub-override-perl (0.09-2) ... Setting up libasan6-armel-cross (10.2.0-19cross1) ... Setting up automake (1:1.16.3-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libtirpc3:amd64 (1.2.6-3) ... Setting up libfile-which-perl (1.23-1) ... Setting up gettext (0.19.8.1-10) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-10-dev-armel-cross (10.2.0-19cross1) ... Setting up libdebhelper-perl (13.3) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up libtirpc-dev:amd64 (1.2.6-3) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up gcc-10-arm-linux-gnueabi (10.2.0-19cross1) ... Setting up libfile-stripnondeterminism-perl (1.9.0-1) ... Setting up libstdc++-10-dev-armel-cross (10.2.0-19cross1) ... Setting up po-debconf (1.0.21) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.9.0-1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up gcc-arm-linux-gnueabi (4:10.2.0-1) ... Setting up libc6-dev:amd64 (2.31-5) ... Setting up g++-10-arm-linux-gnueabi (10.2.0-19cross1) ... Setting up libstdc++-10-dev:amd64 (10.2.1-1) ... Setting up g++-10 (10.2.1-1) ... Setting up libtool (2.4.6-14) ... Setting up g++-arm-linux-gnueabi (4:10.2.0-1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++ (4:10.2.0-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up build-essential (12.8) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3.1) ... Setting up dpkg-cross (2.6.15-3.1) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libcrypt1:armel (1:4.4.17-1) ... Setting up libgcc-s1:armel (10.2.1-1) ... Setting up libc6:armel (2.31-5) ... Setting up libcrypt-dev:armel (1:4.4.17-1) ... Setting up libstdc++6:armel (10.2.1-1) ... Setting up libkeyutils1:armel (1.6.1-2) ... Setting up libssl1.1:armel (1.1.1h-1) ... Setting up debhelper (13.3) ... Setting up libcom-err2:armel (1.45.6-1) ... Setting up libgomp1:armel (10.2.1-1) ... Setting up libkrb5support0:armel (1.18.3-4) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.3.0-19) ... Setting up libatomic1:armel (10.2.1-1) ... Setting up libk5crypto3:armel (1.18.3-4) ... Setting up libubsan1:armel (10.2.1-1) ... Setting up libkrb5-3:armel (1.18.3-4) ... Setting up libgcc-9-dev:armel (9.3.0-19) ... Setting up libgssapi-krb5-2:armel (1.18.3-4) ... Setting up libtirpc3:armel (1.2.6-3) ... Setting up libtirpc-dev:armel (1.2.6-3) ... Setting up libnsl2:armel (1.3.0-2) ... Setting up libnsl-dev:armel (1.3.0-2) ... Setting up libc6-dev:armel (2.31-5) ... Setting up libstdc++-9-dev:armel (9.3.0-19) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.31-5) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-12-amd64 #1 SMP Debian 4.19.152-1 (2020-10-18) amd64 (x86_64) Toolchain package versions: binutils_2.35.1-4 dpkg-dev_1.20.5 g++-10_10.2.1-1 gcc-10_10.2.1-1 libc6-dev_2.31-5 libstdc++-10-dev_10.2.1-1 libstdc++-10-dev-armel-cross_10.2.0-19cross1 libstdc++-9-dev_9.3.0-19 libstdc++6_10.2.1-1 libstdc++6-armel-cross_10.2.0-19cross1 linux-libc-dev_5.9.11-1 Package versions: adduser_3.118 apt_2.1.12 autoconf_2.69-11.1 automake_1:1.16.3-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.48 bash_5.1-1 binutils_2.35.1-4 binutils-arm-linux-gnueabi_2.35.1-4 binutils-common_2.35.1-4 binutils-x86-64-linux-gnu_2.35.1-4 bsdextrautils_2.36.1-2 bsdutils_1:2.36.1-2 build-essential_12.8 bzip2_1.0.8-4 coreutils_8.32-4+b1 cpp_4:10.2.0-1 cpp-10_10.2.1-1 cpp-10-arm-linux-gnueabi_10.2.0-19cross1 cpp-8_8.4.0-5 cpp-arm-linux-gnueabi_4:10.2.0-1 cross-config_2.6.15-3.1 crossbuild-essential-armel_12.8 dash_0.5.11+git20200708+dd9ef66-2 debconf_1.5.74 debhelper_13.3 debian-archive-keyring_2019.1 debianutils_4.11.2 dh-autoreconf_19 dh-strip-nondeterminism_1.9.0-1 diffutils_1:3.7-3 dpkg_1.20.5 dpkg-cross_2.6.15-3.1 dpkg-dev_1.20.5 dwz_0.13+20201015-2 e2fsprogs_1.45.6-1 fakeroot_1.25.3-1.1 fdisk_2.36.1-2 file_1:5.39-3 findutils_4.7.0+git20201010-2 g++_4:10.2.0-1 g++-10_10.2.1-1 g++-10-arm-linux-gnueabi_10.2.0-19cross1 g++-arm-linux-gnueabi_4:10.2.0-1 gcc_4:10.2.0-1 gcc-10_10.2.1-1 gcc-10-arm-linux-gnueabi_10.2.0-19cross1 gcc-10-arm-linux-gnueabi-base_10.2.0-19cross1 gcc-10-base_10.2.1-1 gcc-10-cross-base_10.2.0-19cross1 gcc-8-base_8.4.0-5 gcc-9-base_9.3.0-19 gcc-arm-linux-gnueabi_4:10.2.0-1 gettext_0.19.8.1-10 gettext-base_0.19.8.1-10 gpgv_2.2.20-1 grep_3.6-1 groff-base_1.22.4-5 gzip_1.10-2 hostname_3.23 init-system-helpers_1.59 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-8 libapt-pkg5.0_1.8.4 libapt-pkg6.0_2.1.12 libarchive-zip-perl_1.68-1 libasan5_9.3.0-19 libasan6_10.2.1-1 libasan6-armel-cross_10.2.0-19cross1 libatomic1_10.2.1-1 libatomic1-armel-cross_10.2.0-19cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-3.1 libaudit1_1:2.8.5-3.1+b1 libbinutils_2.35.1-4 libblkid1_2.36.1-2 libbz2-1.0_1.0.8-4 libc-bin_2.31-5 libc-dev-bin_2.31-5 libc6_2.31-5 libc6-armel-cross_2.31-1cross2 libc6-dev_2.31-5 libc6-dev-armel-cross_2.31-1cross2 libcap-ng0_0.7.9-2.2+b1 libcc1-0_10.2.1-1 libcom-err2_1.45.6-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000003-1 libcroco3_0.6.13-1 libcrypt-dev_1:4.4.17-1 libcrypt1_1:4.4.17-1 libctf-nobfd0_2.35.1-4 libctf0_2.35.1-4 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: mafft Binary: mafft Architecture: any Version: 7.475-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://mafft.cbrc.jp/alignment/software/ Standards-Version: 4.5.1 Vcs-Browser: https://salsa.debian.org/med-team/mafft Vcs-Git: https://salsa.debian.org/med-team/mafft.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: mafft deb science optional arch=any Checksums-Sha1: c53cf9a444d81f883204b66d41dbfa84dba1fb61 615110 mafft_7.475.orig.tar.gz e05f8a92375f2eca5836ede629740ea2791d1d6b 7300 mafft_7.475-1.debian.tar.xz Checksums-Sha256: d908dd15b89b41fe0f6d2fa0b181b760e8a9b5eb1091d9e69a5d40ba46155144 615110 mafft_7.475.orig.tar.gz 9d5149fe9dc8a55ae949c3c16f0adf8d98d25c911669420e4418d34764ae805f 7300 mafft_7.475-1.debian.tar.xz Files: 34853d25f83dde69e36c4886ea779751 615110 mafft_7.475.orig.tar.gz ab6665daae762969fda30366a3db0d12 7300 mafft_7.475-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJHBAEBCAAxFiEEhMGXeonn7+0+XKYuL9i+2sAg7tEFAl/OZTkTHG1vZWxsZXJA ZGViaWFuLm9yZwAKCRAv2L7awCDu0fZCD/9yzzknL8U85cB8Z1mXK53ZHm6kXyzQ 2HFCReyxxyGApBAz5LdN4wDFsO9K84aaUsXoPOZBV5RLyCGdcX2XShv30WmQP97Q lCkVWsScw9aS4HU6dUW4dp849LzIc4I6WeQmjd8cr9Tk/IPv3/gBoKDgFvc0D/QO JOO2xndLikovJTBAYdrgt9jC8wqUjUaTtj1+BHd91VyRlwJVP+55Oh2+OWxX+nYE ncMDe4m+JUD7bWaWBDvArbcYoxqPJz8lD2KXMJLTd99ccImv7W1aTQYDOhOSJjVJ 4epZSwjTzRDHb1OgtPjcAELJsupcB1MYCN9DnqtOIJA9QVWIUhJjiOQ2azsXAEI1 bBb7HxIZ8zrqIahWMLzTWdt3OybphwjKXRU+w9YXYll9aW5bJql+gjveNn7RiaUB n/Eg1Y0FDdW+guFkO68jiIbafWEA7jIntx5UPN5p+70zkzkVZSOtDw84wHpMcGFC cKEVwaHXF/zhLoX1pF+0uvZXUbIC2Gx8Qw61tU1udKZt2k8fnTz7DYMtZO45EL3w PeAtPd/BJ6K1CbwWBAtLKPDWvbaeh5x2DkaT9LnMIv6MBGtsDlPIBNJJ0tSi50Qj wrl6uM8Gxo+/pcDFTFVbhiQ3OQGa6JazwEhpsW96C9EKdO4LSTQTvYqM3+rz8B+3 rllMVTNwxJ+fPQ== =wg0s -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.OWdMC21i/trustedkeys.kbx': General error gpgv: Signature made Mon Dec 7 17:24:09 2020 UTC gpgv: using RSA key 84C1977A89E7EFED3E5CA62E2FD8BEDAC020EED1 gpgv: issuer "moeller@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mafft_7.475-1.dsc dpkg-source: info: extracting mafft in /<> dpkg-source: info: unpacking mafft_7.475.orig.tar.gz dpkg-source: info: unpacking mafft_7.475-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying gcc10.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-accd2715-160e-47ce-8d44-301c3398ecd7 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package mafft dpkg-buildpackage: info: source version 7.475-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Steffen Moeller dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel debian/rules clean dh clean --sourcedirectory=core dh_auto_clean -O--sourcedirectory=core cd core && make -j1 clean make[1]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb mafft-sparsecore.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[1]: Leaving directory '/<>/core' dh_autoreconf_clean -O--sourcedirectory=core debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=core dh_update_autotools_config -a -O--sourcedirectory=core dh_autoreconf -a -O--sourcedirectory=core dh_auto_configure -a -O--sourcedirectory=core debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd core && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c io.c: In function ‘PreRead’: io.c:1096:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1096 | fgets( b, B-1, fp ); *locnjob = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c:1101:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1101 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1105:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1105 | fgets( b, B-1, fp ); nleni = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘FRead’: io.c:1141:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1141 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1231:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1231 | fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_part_pointer’: io.c:2666:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2666 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2668:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2668 | fgets( b, B, fp ); nseq0 = atoi( b ); // 2020/Oct/23 | ^~~~~~~~~~~~~~~~~ io.c:2674:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2674 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_pointer’: io.c:2704:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2704 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2705:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2705 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) | ^~~~~~~~~~~~~~~~~ io.c:2710:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2710 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf’: io.c:2738:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2738 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2739:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2739 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2740:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2740 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_double’: io.c:2768:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2768 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2769:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2769 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2770:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2770 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_int’: io.c:2798:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2798 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2799:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2799 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2800:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2800 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_pointer’: io.c:2829:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2829 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2830:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2830 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2831:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2831 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2’: io.c:2859:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2859 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2860:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2860 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2861:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2861 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta_sub’: io.c:3061:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3061 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3076:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3076 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadSsearch’: io.c:3095:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3095 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_avscore’: io.c:3223:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3223 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3230:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3230 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3231:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3231 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_scoreonly’: io.c:3346:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3346 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3353:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3353 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3354:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3354 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7’: io.c:3464:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3464 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3471:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3471 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3472:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3472 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34noalign’: io.c:3496:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3496 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_nuc’: io.c:3533:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3533 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3559:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3559 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10’: io.c:3672:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3672 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3696:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3696 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nucbk’: io.c:3799:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3799 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nuc’: io.c:3849:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3849 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly’: io.c:3910:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3910 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34’: io.c:3966:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3966 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3992:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3992 | fgets( b, B-1, fp ); // initn: | ^~~~~~~~~~~~~~~~~~~ io.c:3995:10: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3995 | fgets( b, B-1, fp ); // Smith-Waterman score | ^~~~~~~~~~~~~~~~~~~ io.c:4007:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4007 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta3’: io.c:4029:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4029 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta’: io.c:4054:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4054 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt’: io.c:4091:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4091 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt2’: io.c:4112:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4112 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readOtherOptions’: io.c:4208:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4208 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘loadaamtx’: io.c:5466:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5466 | fgets( inorder, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5498:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5498 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5521:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5521 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readsubalignmentstable’: io.c:5677:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5677 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5698:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5698 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readmccaskill’: io.c:5752:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5752 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5762:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5762 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readpairfoldalign’: io.c:5821:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5821 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5834:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5834 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5841:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5841 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5855:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5855 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5861:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5861 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readexternalanchors’: io.c:6299:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6299 | fgets( buf, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c mltaln9.c: In function ‘check_guidetreefile’: mltaln9.c:2850:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2850 | fgets( string, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘readlocalhomtable2_single_bin_noseek’: mltaln9.c:15182:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15182 | fread( &size, sizeof( int ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15183:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15183 | fread( &opt, sizeof( double ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15186:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15186 | fread( m, size*sizeof( int ), 3, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15222:2: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15222 | fread( &c, sizeof( char ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘createchain’: mltaln9.c:2113:17: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2113 | instanttree = calloc( treelen, sizeof( char ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mltaln.h:13, from mltaln9.c:1: /usr/arm-linux-gnueabi/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ mltaln9.c:2124:10: warning: argument 1 range [2147483648, 4294967295] exceeds maximum object size 2147483647 [-Walloc-size-larger-than=] 2124 | order = calloc( nseq, sizeof( int ) ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from mltaln.h:13, from mltaln9.c:1: /usr/arm-linux-gnueabi/include/stdlib.h:542:14: note: in a call to allocation function ‘calloc’ declared here 542 | extern void *calloc (size_t __nmemb, size_t __size) | ^~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:867, from mltaln.h:12, from mltaln9.c:1: In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2850:2: /usr/arm-linux-gnueabi/include/bits/stdio2.h:263:9: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 263 | return __fgets_chk_warn (__s, __bos (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c In file included from constants.c:7: blosum.c: In function ‘overridematrix’: blosum.c:370:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 370 | fgets( buf, 499, fp ); | ^~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c rna.c: In function ‘rnaalifoldcall’: rna.c:225:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | system( cmd ); | ^~~~~~~~~~~~~ rna.c:245:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ rna.c:285:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | system( cmd ); | ^~~~~~~~~~~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c dvtditr.c: In function ‘main’: dvtditr.c:1020:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1020 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c defs.c:173:12: warning: ‘nadd’ initialized and declared ‘extern’ 173 | extern int nadd = 0; // <- static in tbfast.c, pairlocalalign.c | ^~~~ arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c arm-linux-gnueabi-gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c dndfast7.c: In function ‘main’: dndfast7.c:326:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | system( com ); | ^~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c dndblast.c: In function ‘main’: dndblast.c:201:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system( com ); | ^~~~~~~~~~~~~ dndblast.c:382:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 382 | system( com ); | ^~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c arm-linux-gnueabi-gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c arm-linux-gnueabi-gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalignmain.c arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c pairlocalalign.c: In function ‘calllast_once’: pairlocalalign.c:1055:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1055 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c:1091:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1091 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx’: pairlocalalign.c:607:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 607 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calllast_fast’: pairlocalalign.c:980:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 980 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘lastcallthread’: pairlocalalign.c:871:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 871 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx_singleq’: pairlocalalign.c:373:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 373 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readhat4’: pairlocalalign.c:1531:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1531 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1543:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1543 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘recalllara’: pairlocalalign.c:1244:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1244 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘callmxscarna_giving_bpp’: pairlocalalign.c:1407:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1407 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1409:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1409 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1429:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1429 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1450:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1450 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1464:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1464 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1484:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1484 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1486:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1486 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calldafs_giving_bpp’: pairlocalalign.c:1290:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1290 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1292:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1292 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1312:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1312 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1333:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1333 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1343:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1343 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1363:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1363 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1365:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1365 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1367:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1367 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘pairalign_node’: pairlocalalign.c:3445:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3445 | system( "rm -rf hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3446:2: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3446 | system( "mkdir hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3451:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3451 | system( fn ); | ^~~~~~~~~~~~ arm-linux-gnueabi-gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairlocalalignmain.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c arm-linux-gnueabi-gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c pairash.c: In function ‘prepareash’: pairash.c:639:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 639 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:681:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 681 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash’: pairash.c:485:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 485 | system( com ); | ^~~~~~~~~~~~~ pairash.c: In function ‘readrash’: pairash.c:277:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 277 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:284:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 284 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:289:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:294:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘preparetmalign’: pairash.c:530:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 530 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:576:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 576 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:587:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 587 | system( command ); | ^~~~~~~~~~~~~~~~~ pairash.c: In function ‘checkcbeta’: pairash.c:321:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 321 | fgets( linec, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign’: pairash.c:347:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | system( com ); | ^~~~~~~~~~~~~ pairash.c:356:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 356 | fgets( com, 100, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘readtmalign’: pairash.c:228:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:232:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:235:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:238:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash.constprop’: pairash.c:428:29: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 428 | sprintf( cachefile, "%s/%s.%s.rash", cachedir, fname1, fname2 ); | ^ In file included from /usr/arm-linux-gnueabi/include/stdio.h:867, from mltaln.h:12, from pairash.c:1: /usr/arm-linux-gnueabi/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 8 or more bytes (assuming 10007) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:484:22: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9996 [-Wformat-overflow=] 484 | sprintf( com, "cat %s > %s.rashout", cachefile, pairid ); | ^~ ~~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:867, from mltaln.h:12, from pairash.c:1: /usr/arm-linux-gnueabi/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 16 and 11014 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign.constprop’: pairash.c:346:27: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9991 [-Wformat-overflow=] 346 | sprintf( com, "mkdir -p %s", cachedir ); | ^~ ~~~~~~~~ In file included from /usr/arm-linux-gnueabi/include/stdio.h:867, from mltaln.h:12, from pairash.c:1: /usr/arm-linux-gnueabi/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 10009 bytes into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:349:31: warning: ‘-’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 349 | sprintf( cachefile, "%s/%s%s-%s%s", cachedir, fname1, chain1, fname2, chain2 ); | ^ In file included from /usr/arm-linux-gnueabi/include/stdio.h:867, from mltaln.h:12, from pairash.c:1: /usr/arm-linux-gnueabi/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 3 or more bytes (assuming 10002) into a destination of size 10000 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c arm-linux-gnueabi-gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -o maffttext2hex maffttext2hex.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread maffttext2hex.c: In function ‘main’: maffttext2hex.c:55:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets( (char *)buf, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o hex2maffttext hex2maffttext.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c splittbfast.c: In function ‘main’: splittbfast.c:3218:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3218 | system( com ); | ^~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c disttbfast.c: In function ‘disttbfast’: disttbfast.c:4578:6: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4578 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c tbfast.c: In function ‘main’: tbfast.c:3194:5: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3194 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nodepair.c arm-linux-gnueabi-gcc -o nodepair mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o nodepair.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c arm-linux-gnueabi-gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Lalign11.o genalign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c f2cl.c: In function ‘main’: f2cl.c:287:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fgets( gett, B-1, orderfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c mccaskillwrap.c: In function ‘main’: mccaskillwrap.c:372:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mccaskillwrap.c: In function ‘athread’: mccaskillwrap.c:115:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:117:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:129:3: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ mccaskillwrap.c:155:4: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c: In function ‘readrawmccaskill’: mccaskillwrap.c:46:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c contrafoldwrap.c: In function ‘readcontrafold’: contrafoldwrap.c:57:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c arm-linux-gnueabi-gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c arm-linux-gnueabi-gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c regtable2seq.c: In function ‘readereg’: regtable2seq.c:69:2: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c:97:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c: In function ‘readreg’: regtable2seq.c:120:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c arm-linux-gnueabi-gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c arm-linux-gnueabi-gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c arm-linux-gnueabi-gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c arm-linux-gnueabi-gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filter.o filter.c arm-linux-gnueabi-gcc -o filter mtxutl.o io.o filter.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c arm-linux-gnueabi-gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c restoreu.c: In function ‘main’: restoreu.c:177:4: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 177 | fgets( gett, 999, dlfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c setdirection.c: In function ‘main’: setdirection.c:132:3: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets( line, 99, difp ); | ^~~~~~~~~~~~~~~~~~~~~~~ arm-linux-gnueabi-gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c arm-linux-gnueabi-gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread arm-linux-gnueabi-gcc -o version version.c -Denablemultithread -std=c99 -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-sparsecore.tmpl > mafft-sparsecore.rb cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. make[2]: Leaving directory '/<>/core' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=core" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=core dh_prep -a -O--sourcedirectory=core debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft cd core && make -j1 install DESTDIR=/<>/debian/mafft AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft make[2]: Entering directory '/<>/core' cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. mkdir -p /<>/debian/mafft/usr/lib/mafft/lib/mafft chmod 755 /<>/debian/mafft/usr/lib/mafft/lib/mafft mkdir -p /<>/debian/mafft/usr/lib/mafft/bin chmod 755 /<>/debian/mafft/usr/lib/mafft/bin chmod 755 mafft mafft-homologs.rb mafft-sparsecore.rb install --strip-program=true mafft mafft-homologs.rb mafft-sparsecore.rb /<>/debian/mafft/usr/lib/mafft/bin install: WARNING: ignoring --strip-program option as -s option was not specified chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails strip dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # may fail for dash_client on mac. strip: Unable to recognise the format of the input file `dvtditr' strip: Unable to recognise the format of the input file `dndfast7' strip: Unable to recognise the format of the input file `dndblast' strip: Unable to recognise the format of the input file `sextet5' strip: Unable to recognise the format of the input file `mafft-distance' strip: Unable to recognise the format of the input file `pairlocalalign' strip: Unable to recognise the format of the input file `multi2hat3s' strip: Unable to recognise the format of the input file `pairash' strip: Unable to recognise the format of the input file `addsingle' strip: Unable to recognise the format of the input file `maffttext2hex' strip: Unable to recognise the format of the input file `hex2maffttext' strip: Unable to recognise the format of the input file `splittbfast' strip: Unable to recognise the format of the input file `disttbfast' strip: Unable to recognise the format of the input file `tbfast' strip: Unable to recognise the format of the input file `nodepair' strip: Unable to recognise the format of the input file `mafft-profile' strip: Unable to recognise the format of the input file `f2cl' strip: Unable to recognise the format of the input file `mccaskillwrap' strip: Unable to recognise the format of the input file `contrafoldwrap' strip: Unable to recognise the format of the input file `countlen' strip: Unable to recognise the format of the input file `seq2regtable' strip: Unable to recognise the format of the input file `regtable2seq' strip: Unable to recognise the format of the input file `score' strip: Unable to recognise the format of the input file `getlag' strip: Unable to recognise the format of the input file `dndpre' strip: Unable to recognise the format of the input file `setcore' strip: Unable to recognise the format of the input file `filter' strip: Unable to recognise the format of the input file `replaceu' strip: Unable to recognise the format of the input file `restoreu' strip: Unable to recognise the format of the input file `setdirection' strip: Unable to recognise the format of the input file `makedirectionlist' strip: Unable to recognise the format of the input file `version' install --strip-program=true dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true mafftash_premafft.pl seekquencer_premafft.pl /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified ( cd /<>/debian/mafft/usr/lib/mafft/bin; \ rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \ rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \ ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \ ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \ ln -s mafft einsi; \ ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \ ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \ ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\ rm -f mafft-profile mafft-profile.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-profile .; \ rm -f mafft-distance mafft-distance.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-distance . ) mkdir -p /<>/debian/mafft/usr/share/man/man1 chmod 755 /<>/debian/mafft/usr/share/man/man1 install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified make[2]: Leaving directory '/<>/core' rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=core dh_installchangelogs -a -O--sourcedirectory=core dh_installman -a -O--sourcedirectory=core dh_installsystemduser -a -O--sourcedirectory=core dh_perl -a -O--sourcedirectory=core dh_link -a -O--sourcedirectory=core dh_strip_nondeterminism -a -O--sourcedirectory=core debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X test/sample make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=core dh_missing -a -O--sourcedirectory=core dh_dwz -a -a -O--sourcedirectory=core dh_strip -a -a -O--sourcedirectory=core dh_makeshlibs -a -a -O--sourcedirectory=core dh_shlibdeps -a -a -O--sourcedirectory=core dh_installdeb -a -O--sourcedirectory=core dh_gencontrol -a -O--sourcedirectory=core dh_md5sums -a -O--sourcedirectory=core dh_builddeb -a -O--sourcedirectory=core dpkg-deb: building package 'mafft' in '../mafft_7.475-1_armel.deb'. dpkg-deb: building package 'mafft-dbgsym' in '../mafft-dbgsym_7.475-1_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mafft_7.475-1_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2020-12-08T23:46:49Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mafft_7.475-1_armel.changes: ---------------------------- Format: 1.8 Date: Mon, 07 Dec 2020 18:22:24 +0100 Source: mafft Binary: mafft mafft-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 7.475-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Steffen Moeller Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.475-1) unstable; urgency=medium . * Team upload. * New upstream version * Standards-Version: 4.5.1 (routine-update) Checksums-Sha1: 766cce7e62083980430b57007ba40ac76605794f 9716644 mafft-dbgsym_7.475-1_armel.deb 0bd92695b27f839a06727c93cfdc04deebf41a86 4888 mafft_7.475-1_armel.buildinfo 83e773c6491778b8e7f684449c02bcb4699ac04e 913508 mafft_7.475-1_armel.deb Checksums-Sha256: 8de7ab5647ccd70a9798b9fff28543db3684e4858763f10adb08f30aced6a14d 9716644 mafft-dbgsym_7.475-1_armel.deb 69e47c08b1eda40fda719593a0e63fd16ec07bf200021d6bd6cb53e5f199fb5e 4888 mafft_7.475-1_armel.buildinfo e105726d5ecd06887508e828525db0420319a08ad68c3714c872aed006fc3f77 913508 mafft_7.475-1_armel.deb Files: 9852f8222a35612b25df695db7ea212d 9716644 debug optional mafft-dbgsym_7.475-1_armel.deb 21e375b58d88fb25aab63fb3687af2aa 4888 science optional mafft_7.475-1_armel.buildinfo 289bc7184e0ae34b0ba3bdd80ff43f9e 913508 science optional mafft_7.475-1_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mafft Binary: mafft mafft-dbgsym Architecture: armel Version: 7.475-1 Checksums-Md5: 9852f8222a35612b25df695db7ea212d 9716644 mafft-dbgsym_7.475-1_armel.deb 289bc7184e0ae34b0ba3bdd80ff43f9e 913508 mafft_7.475-1_armel.deb Checksums-Sha1: 766cce7e62083980430b57007ba40ac76605794f 9716644 mafft-dbgsym_7.475-1_armel.deb 83e773c6491778b8e7f684449c02bcb4699ac04e 913508 mafft_7.475-1_armel.deb Checksums-Sha256: 8de7ab5647ccd70a9798b9fff28543db3684e4858763f10adb08f30aced6a14d 9716644 mafft-dbgsym_7.475-1_armel.deb e105726d5ecd06887508e828525db0420319a08ad68c3714c872aed006fc3f77 913508 mafft_7.475-1_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Tue, 08 Dec 2020 23:46:49 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11.1), automake (= 1:1.16.3-1), autopoint (= 0.19.8.1-10), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.48), bash (= 5.1-1), binutils (= 2.35.1-4), binutils-common (= 2.35.1-4), binutils-x86-64-linux-gnu (= 2.35.1-4), bsdextrautils (= 2.36.1-2), bsdutils (= 1:2.36.1-2), build-essential (= 12.8), bzip2 (= 1.0.8-4), coreutils (= 8.32-4+b1), cpp (= 4:10.2.0-1), cpp-10 (= 10.2.1-1), dash (= 0.5.11+git20200708+dd9ef66-2), debconf (= 1.5.74), debhelper (= 13.3), debianutils (= 4.11.2), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.9.0-1), diffutils (= 1:3.7-3), dpkg (= 1.20.5), dpkg-dev (= 1.20.5), dwz (= 0.13+20201015-2), file (= 1:5.39-3), findutils (= 4.7.0+git20201010-2), g++ (= 4:10.2.0-1), g++-10 (= 10.2.1-1), gcc (= 4:10.2.0-1), gcc-10 (= 10.2.1-1), gcc-10-base (= 10.2.1-1), gettext (= 0.19.8.1-10), gettext-base (= 0.19.8.1-10), grep (= 3.6-1), groff-base (= 1.22.4-5), gzip (= 1.10-2), hostname (= 3.23), init-system-helpers (= 1.59), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-8), libarchive-zip-perl (= 1.68-1), libasan6 (= 10.2.1-1), libatomic1 (= 10.2.1-1), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-3.1), libaudit1 (= 1:2.8.5-3.1+b1), libbinutils (= 2.35.1-4), libblkid1 (= 2.36.1-2), libbz2-1.0 (= 1.0.8-4), libc-bin (= 2.31-5), libc-dev-bin (= 2.31-5), libc6 (= 2.31-5), libc6-dev (= 2.31-5), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-1), libcom-err2 (= 1.45.6-1), libcroco3 (= 0.6.13-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.1-4), libctf0 (= 2.35.1-4), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.255), libdebhelper-perl (= 13.3), libdpkg-perl (= 1.20.5), libelf1 (= 0.182-1), libffi7 (= 3.3-5), libfile-stripnondeterminism-perl (= 1.9.0-1), libgcc-10-dev (= 10.2.1-1), libgcc-s1 (= 10.2.1-1), libgcrypt20 (= 1.8.7-2), libgdbm-compat4 (= 1.18.1-5.1), libgdbm6 (= 1.18.1-5.1), libglib2.0-0 (= 2.66.3-2), libgmp10 (= 2:6.2.1+dfsg-1), libgomp1 (= 10.2.1-1), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libicu67 (= 67.1-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-1), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), liblsan0 (= 10.2.1-1), liblz4-1 (= 1.9.2-2), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-2), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.35-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.0-5), libpipeline1 (= 1.5.3-1), libquadmath0 (= 10.2.1-1), libseccomp2 (= 2.5.0-3+b1), libselinux1 (= 3.1-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.36.1-2), libssl1.1 (= 1.1.1h-1), libstdc++-10-dev (= 10.2.1-1), libstdc++6 (= 10.2.1-1), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.1-3), libtinfo6 (= 6.2+20201114-1), libtirpc-common (= 1.2.6-3), libtirpc-dev (= 1.2.6-3), libtirpc3 (= 1.2.6-3), libtool (= 2.4.6-14), libtsan0 (= 10.2.1-1), libubsan1 (= 10.2.1-1), libuchardet0 (= 0.0.7-1), libudev1 (= 247.1-3), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-2), libxml2 (= 2.9.10+dfsg-6.3+b1), libzstd1 (= 1.4.5+dfsg-4), linux-libc-dev (= 5.9.11-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-4), make (= 4.3-4), man-db (= 2.9.3-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-1), ncurses-bin (= 6.2+20201114-1), patch (= 2.7.6-6), perl (= 5.32.0-5), perl-base (= 5.32.0-5), perl-modules-5.32 (= 5.32.0-5), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12+nmu1), sysvinit-utils (= 2.96-5), tar (= 1.32+dfsg-1), util-linux (= 2.36.1-2), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1607361744" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mafft-dbgsym_7.475-1_armel.deb ------------------------------ new Debian package, version 2.0. size 9716644 bytes: control archive=2044 bytes. 1635 bytes, 12 lines control 3475 bytes, 33 lines md5sums Package: mafft-dbgsym Source: mafft Version: 7.475-1 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 12030 Depends: mafft (= 7.475-1) Section: debug Priority: optional Description: debug symbols for mafft Build-Ids: 05c4cca677e878768276c4e8d76f030c01172cd0 117cdc097c1d2a9503e81dc7ecb406fa150dd20f 129b504f5bf562e7425d03099f6064637baec96d 1765a1f418a3bc6089d80960e6b34b4a1cd1e7dc 1bf4d6ed658311e75dfd20e252c8739bd2d704ad 1ccea3ef1464f88caa4459753b2827e06ad93cf1 263fc8b868b560f0c49dfb7855df02ada9da3a78 369e11e5633d42767bf71c33052d95d97c7b1b87 38c1fc1d2d6895d5934fb144ebcb2eb87eeaed13 3dccf113655bb845ca5fb5bceaceda2350d13912 4acb33b61243cc244c855c2ff57dade3234e8a54 4c63cfe317a8a2bce719922b083a2647c30c64f6 5112932ebe2081eb2302db7015aa7dcf657bea86 5a87c05d39d82b35e4b541cab6a2db686d0346bb 5d3830a6157329cb54cb5ebc6842ad591d4ac8a4 5e5313d1426e997224f1be1a976f346ddb4f9764 6bdd969c19f677015f672a8c5b0c3eec62cfec88 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./usr/lib/debug/.build-id/f2/fe861cc0ffcc5d8cfdc22fb5c2434e977a234d.debug drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/debug/.build-id/f7/ -rw-r--r-- root/root 355228 2020-12-07 17:22 ./usr/lib/debug/.build-id/f7/4733037f1816a84342bbda1621ed82589f1d7b.debug drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/debug/.dwz/arm-linux-gnueabi/ -rw-r--r-- root/root 27724 2020-12-07 17:22 ./usr/lib/debug/.dwz/arm-linux-gnueabi/mafft.debug drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/doc/mafft-dbgsym -> mafft mafft_7.475-1_armel.deb ----------------------- new Debian package, version 2.0. size 913508 bytes: control archive=2364 bytes. 1387 bytes, 30 lines control 3848 bytes, 55 lines md5sums Package: mafft Version: 7.475-1 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 11232 Depends: libc6 (>= 2.29), perl:any Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Section: science Priority: optional Homepage: https://mafft.cbrc.jp/alignment/software/ Description: Multiple alignment program for amino acid or nucleotide sequences MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm). drwxr-xr-x root/root 0 2020-12-07 17:22 ./ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/bin/ lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/bin/mafft -> ../lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/bin/mafft-homologs -> ../lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/bin/mafft-profile -> ../lib/mafft/bin/mafft-profile drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/mafft/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/ lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/einsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/fftns -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/fftnsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/ginsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/linsi -> mafft -rwxr-xr-x root/root 106462 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-distance -> ../lib/mafft/mafft-distance lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-einsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-fftns -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-fftnsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-ginsi -> mafft -rwxr-xr-x root/root 11551 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-linsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-nwns -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-nwnsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-profile -> ../lib/mafft/mafft-profile lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-qinsi -> mafft -rwxr-xr-x root/root 7788 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-sparsecore.rb lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/mafft-xinsi -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/nwns -> mafft lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/lib/mafft/bin/nwnsi -> mafft drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/mafft/lib/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/ -rwxr-xr-x root/root 558636 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/addsingle -rwxr-xr-x root/root 304684 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/contrafoldwrap -rwxr-xr-x root/root 87764 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/countlen -rwxr-xr-x root/root 575020 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/disttbfast -rwxr-xr-x root/root 321068 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/dndblast -rwxr-xr-x root/root 316972 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/dndfast7 -rwxr-xr-x root/root 304692 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/dndpre -rwxr-xr-x root/root 570924 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/dvtditr -rwxr-xr-x root/root 153132 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/f2cl -rwxr-xr-x root/root 243412 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/filter -rwxr-xr-x root/root 513580 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/getlag -rwxr-xr-x root/root 5664 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/hex2maffttext -rwxr-xr-x root/root 316972 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/mafft-distance -rwxr-xr-x root/root 513580 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/mafft-profile -rwxr-xr-x root/root 10475 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/mafftash_premafft.pl -rwxr-xr-x root/root 5664 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/maffttext2hex -rwxr-xr-x root/root 529980 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/makedirectionlist -rwxr-xr-x root/root 308780 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/mccaskillwrap -rwxr-xr-x root/root 329260 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/multi2hat3s -rwxr-xr-x root/root 570924 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/nodepair -rwxr-xr-x root/root 529964 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/pairash -rwxr-xr-x root/root 550444 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/pairlocalalign -rwxr-xr-x root/root 243412 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/regtable2seq -rwxr-xr-x root/root 243412 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/replaceu -rwxr-xr-x root/root 243412 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/restoreu -rwxr-xr-x root/root 304684 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/score -rwxr-xr-x root/root 15541 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/seekquencer_premafft.pl -rwxr-xr-x root/root 87764 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/seq2regtable -rwxr-xr-x root/root 513580 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/setcore -rwxr-xr-x root/root 243420 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/setdirection -rwxr-xr-x root/root 316972 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/sextet5 -rwxr-xr-x root/root 538156 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/splittbfast -rwxr-xr-x root/root 611884 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/tbfast -rwxr-xr-x root/root 5664 2020-12-07 17:22 ./usr/lib/mafft/lib/mafft/version drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/doc/mafft/ -rw-r--r-- root/root 3990 2020-12-07 17:22 ./usr/share/doc/mafft/changelog.Debian.gz -rw-r--r-- root/root 2013 2020-12-07 17:22 ./usr/share/doc/mafft/copyright drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/doc/mafft/test/ -rw-r--r-- root/root 16616 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample -rw-r--r-- root/root 30112 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.dpparttree -rw-r--r-- root/root 28816 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.fftns2 -rw-r--r-- root/root 28996 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.fftnsi -rw-r--r-- root/root 29896 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.gins1 -rw-r--r-- root/root 29572 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.ginsi -rw-r--r-- root/root 41380 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.ginsi.allowshift -rw-r--r-- root/root 28888 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.lins1 -rw-r--r-- root/root 29500 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.linsi -rw-r--r-- root/root 30112 2020-11-26 01:45 ./usr/share/doc/mafft/test/sample.parttree -rw-r--r-- root/root 1502 2020-11-26 01:45 ./usr/share/doc/mafft/test/samplerna -rw-r--r-- root/root 1916 2020-11-26 01:45 ./usr/share/doc/mafft/test/samplerna.qinsi -rw-r--r-- root/root 1916 2020-11-26 01:45 ./usr/share/doc/mafft/test/samplerna.xinsi -rw-r--r-- root/root 908 2020-11-26 01:45 ./usr/share/doc/mafft/test/script drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/man/ drwxr-xr-x root/root 0 2020-12-07 17:22 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/ginsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-ginsi.1.gz -> mafft.1.gz -rw-r--r-- root/root 2130 2020-12-07 17:22 ./usr/share/man/man1/mafft-homologs.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2020-12-07 17:22 ./usr/share/man/man1/mafft-profile.1.gz -> mafft.1.gz -rw-r--r-- root/root 4421 2020-12-07 17:22 ./usr/share/man/man1/mafft.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [532 B] Get:5 copy:/<>/apt_archive ./ Packages [619 B] Fetched 2114 B in 0s (84.9 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:armel t1utils unzip 0 upgraded, 89 newly installed, 0 to remove and 0 not upgraded. Need to get 7545 kB of archives. After this operation, 21.8 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.63-1 [35.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7.1 [50.5 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.20-1 [532 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.0-1 [796 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.20-1 [894 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1 [13.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b4 [71.9 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1 [12.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1 [18.6 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b6 [38.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libexception-class-perl all 1.44-1 [32.3 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-perl all 0.03+ds1-1 [18.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libiterator-util-perl all 0.02+ds1-1 [14.2 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b6 [63.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-util-perl amd64 1.102-1+b1 [25.6 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-install-perl all 0.928-1 [11.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-optlist-perl all 0.110-1 [10.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1 [12.3 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.11-1 [8888 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libfont-ttf-perl all 1.06-1 [317 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-html5-entities-perl all 0.004-1 [21.8 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.001004-1 [20.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1 [10.2 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.114-1 [53.6 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-1 [39.2 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012000-1 [348 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.05-1 [90.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.21-8 [84.3 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-25 [172 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7545 kB in 0s (39.9 MB/s) Selecting previously unselected package readline-common. (Reading database ... 21005 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.63-1_amd64.deb ... Unpacking diffstat (1.63-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.3-7.1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.20-1_amd64.deb ... Unpacking gpgconf (2.2.20-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.0-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.0-1) ... Selecting previously unselected package gpg. 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Unpacking sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.36+b4) ... Setting up libunicode-utf8-perl (0.62-1+b2) ... Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.00-4+b1) ... Setting up libdynaloader-functions-perl (0.003-1) ... Setting up libtext-glob-perl (0.11-1) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:amd64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl (4.25-1+b1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-25) ... Setting up libsqlite3-0:amd64 (3.34.0-1) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.3-7.1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1) ... Setting up libnumber-compare-perl (0.03-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1) ... Setting up lzip (1.21-8) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.63-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-1) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.114-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.001004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b6) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-1) ... Setting up libhtml-html5-entities-perl (0.004-1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.05-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.416-1+b6) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libtype-tiny-perl (1.012000-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1) ... Setting up gpgconf (2.2.20-1) ... Setting up gpg (2.2.20-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1) ... Setting up libiterator-util-perl (0.02+ds1-1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1) ... Setting up libb-hooks-endofscope-perl (0.24-1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:armel (0.invalid.0) ... Processing triggers for man-db (2.9.3-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-5) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 127176 Build-Time: 62 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 40 Job: mafft_7.475-1 Lintian: pass Machine Architecture: amd64 Package: mafft Package-Time: 128 Source-Version: 7.475-1 Space: 127176 Status: successful Version: 7.475-1 -------------------------------------------------------------------------------- Finished at 2020-12-08T23:46:49Z Build needed 00:02:08, 127176k disk space