sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir.einval.org +==============================================================================+ | mafft 7.505-1 (amd64) Fri, 01 Jul 2022 14:33:24 +0000 | +==============================================================================+ Package: mafft Version: 7.505-1 Source Version: 7.505-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-6d70faa4-56a1-4b3c-bcb4-c53bcf0b416c' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-T2ZfwQ/resolver-WeKK2D' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main amd64 Packages [9231 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9766 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [9083 kB] Fetched 28.2 MB in 7s (3780 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mafft' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mafft.git Please use: git clone https://salsa.debian.org/med-team/mafft.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 631 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main mafft 7.505-1 (dsc) [1969 B] Get:2 http://mirror.einval.org/debian sid/main mafft 7.505-1 (tar) [621 kB] Get:3 http://mirror.einval.org/debian sid/main mafft 7.505-1 (diff) [7164 B] Fetched 631 kB in 0s (8150 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mafft-T2ZfwQ/mafft-7.505' with '<>' I: NOTICE: Log filtering will replace 'build/mafft-T2ZfwQ' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [404 B] Get:5 copy:/<>/apt_archive ./ Packages [489 B] Fetched 1850 B in 0s (43.6 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-12-base:amd64 gcc-12-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6-amd64-cross libasan8:amd64 libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-amd64-cross libgcc-12-dev:amd64 libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl3:amd64 libstdc++-11-dev-amd64-cross libstdc++-12-dev:amd64 libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0-amd64-cross libtsan2:amd64 libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-x86-64-linux-gnu gcc-11-doc gcc-11-multilib-x86-64-linux-gnu manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc:amd64 krb5-user:amd64 libstdc++-12-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 libarchive-cpio-perl krb5-locales:amd64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cpp-11-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-11-cross-base gcc-11-x86-64-linux-gnu gcc-11-x86-64-linux-gnu-base gcc-12-base:amd64 gcc-12-cross-base gcc-x86-64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6-amd64-cross libasan8:amd64 libatomic1:amd64 libatomic1-amd64-cross libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2:amd64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev-amd64-cross libgcc-12-dev:amd64 libgcc-s1:amd64 libgcc-s1-amd64-cross libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2:amd64 libicu71 libio-string-perl libitm1:amd64 libitm1-amd64-cross libk5crypto3:amd64 libkeyutils1:amd64 libkrb5-3:amd64 libkrb5support0:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross libmagic-mgc libmagic1 libnsl-dev:amd64 libnsl2:amd64 libpipeline1 libquadmath0:amd64 libquadmath0-amd64-cross libsigsegv2 libssl3:amd64 libstdc++-11-dev-amd64-cross libstdc++-12-dev:amd64 libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtirpc-dev:amd64 libtirpc3:amd64 libtool libtsan0-amd64-cross libtsan2:amd64 libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:amd64 linux-libc-dev-amd64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:amd64 sensible-utils ucf 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [916 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b2 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-4 [295 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-4 [124 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-4 [66.9 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-6 [173 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.38-4 [145 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.6-1 [36.8 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.10.2-1 [1392 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.14-1 [37.0 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-6 [510 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu-base arm64 11.3.0-3cross1 [209 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 cpp-11-x86-64-linux-gnu arm64 11.3.0-3cross1 [7867 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 cpp-x86-64-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 binutils-x86-64-linux-gnu arm64 2.38.50.20220629-2 [5415 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.3.0-3cross1 [204 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 gcc-12-cross-base all 12.1.0-2cross1 [202 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-amd64-cross all 12.1.0-2cross1 [50.3 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libgomp1-amd64-cross all 12.1.0-2cross1 [113 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libitm1-amd64-cross all 12.1.0-2cross1 [25.6 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libatomic1-amd64-cross all 12.1.0-2cross1 [9096 B] Get:31 http://mirror.einval.org/debian sid/main arm64 libasan6-amd64-cross all 11.3.0-3cross1 [2042 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 liblsan0-amd64-cross all 12.1.0-2cross1 [968 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libtsan0-amd64-cross all 11.3.0-3cross1 [2010 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libc6-amd64-cross all 2.33-1cross1 [1579 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libstdc++6-amd64-cross all 12.1.0-2cross1 [571 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libubsan1-amd64-cross all 12.1.0-2cross1 [882 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libquadmath0-amd64-cross all 12.1.0-2cross1 [144 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-amd64-cross all 11.3.0-3cross1 [2359 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 gcc-11-x86-64-linux-gnu arm64 11.3.0-3cross1 [15.6 MB] Get:40 http://mirror.einval.org/debian sid/main arm64 gcc-x86-64-linux-gnu arm64 4:11.2.0-2 [1460 B] Get:41 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-amd64-cross all 5.15.5-1cross1 [1576 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libc6-dev-amd64-cross all 2.33-1cross1 [2272 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-amd64-cross all 11.3.0-3cross1 [1968 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 g++-11-x86-64-linux-gnu arm64 11.3.0-3cross1 [8686 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 g++-x86-64-linux-gnu arm64 4:11.2.0-2 [1176 B] Get:46 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libicu71 arm64 71.1-3 [9046 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.14+dfsg-1 [640 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-2 [21.0 kB] 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http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.7.1 [195 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.7-4 [526 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-3 [10.4 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.187-1 [178 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-6 [1260 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.7.1 [1071 kB] Get:75 http://mirror.einval.org/debian sid/main amd64 gcc-12-base amd64 12.1.0-5 [207 kB] Get:76 http://mirror.einval.org/debian sid/main amd64 libgcc-s1 amd64 12.1.0-5 [50.2 kB] Get:77 http://mirror.einval.org/debian sid/main amd64 libc6 amd64 2.33-7 [2843 kB] Get:78 http://mirror.einval.org/debian sid/main amd64 libasan8 amd64 12.1.0-5 [2193 kB] Get:79 http://mirror.einval.org/debian sid/main amd64 libatomic1 amd64 12.1.0-5 [9348 B] Get:80 http://mirror.einval.org/debian sid/main amd64 linux-libc-dev amd64 5.18.5-1 [1596 kB] Get:81 http://mirror.einval.org/debian sid/main amd64 libcrypt1 amd64 1:4.4.28-1 [89.1 kB] Get:82 http://mirror.einval.org/debian sid/main amd64 libcrypt-dev amd64 1:4.4.28-1 [118 kB] Get:83 http://mirror.einval.org/debian sid/main amd64 libcom-err2 amd64 1.46.5-2 [75.7 kB] Get:84 http://mirror.einval.org/debian sid/main amd64 libkrb5support0 amd64 1.19.2-2+b2 [65.9 kB] Get:85 http://mirror.einval.org/debian sid/main amd64 libk5crypto3 amd64 1.19.2-2+b2 [114 kB] Get:86 http://mirror.einval.org/debian sid/main amd64 libkeyutils1 amd64 1.6.3-1 [15.7 kB] Get:87 http://mirror.einval.org/debian sid/main amd64 libssl3 amd64 3.0.4-2 [2034 kB] Get:88 http://mirror.einval.org/debian sid/main amd64 libkrb5-3 amd64 1.19.2-2+b2 [363 kB] Get:89 http://mirror.einval.org/debian sid/main amd64 libgssapi-krb5-2 amd64 1.19.2-2+b2 [166 kB] Get:90 http://mirror.einval.org/debian sid/main amd64 libtirpc3 amd64 1.3.2-2 [83.9 kB] Get:91 http://mirror.einval.org/debian sid/main amd64 libnsl2 amd64 1.3.0-2 [39.5 kB] Get:92 http://mirror.einval.org/debian sid/main amd64 libtirpc-dev amd64 1.3.2-2 [190 kB] Get:93 http://mirror.einval.org/debian sid/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:94 http://mirror.einval.org/debian sid/main amd64 libc6-dev amd64 2.33-7 [2289 kB] Get:95 http://mirror.einval.org/debian sid/main amd64 libgomp1 amd64 12.1.0-5 [116 kB] Get:96 http://mirror.einval.org/debian sid/main amd64 libitm1 amd64 12.1.0-5 [26.1 kB] Get:97 http://mirror.einval.org/debian sid/main amd64 liblsan0 amd64 12.1.0-5 [969 kB] Get:98 http://mirror.einval.org/debian sid/main amd64 libtsan2 amd64 12.1.0-5 [2197 kB] Get:99 http://mirror.einval.org/debian sid/main amd64 libstdc++6 amd64 12.1.0-5 [613 kB] Get:100 http://mirror.einval.org/debian sid/main amd64 libubsan1 amd64 12.1.0-5 [882 kB] Get:101 http://mirror.einval.org/debian sid/main amd64 libquadmath0 amd64 12.1.0-5 [145 kB] Get:102 http://mirror.einval.org/debian sid/main amd64 libgcc-12-dev amd64 12.1.0-5 [2436 kB] Get:103 http://mirror.einval.org/debian sid/main amd64 libstdc++-12-dev amd64 12.1.0-5 [2023 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 96.3 MB in 1s (81.2 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12458 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-4+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b2) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.41-4_arm64.deb ... Unpacking libmagic-mgc (1:5.41-4) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../003-libmagic1_1%3a5.41-4_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-4) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.41-4_arm64.deb ... Unpacking file (1:5.41-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-6_arm64.deb ... Unpacking gettext-base (0.21-6) ... 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Setting up libasan6-amd64-cross (11.3.0-3cross1) ... Setting up binutils-x86-64-linux-gnu (2.38.50.20220629-2) ... Setting up libstdc++6-amd64-cross (12.1.0-2cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-6) ... Setting up libtool (2.4.7-4) ... Setting up liblsan0-amd64-cross (12.1.0-2cross1) ... Setting up libc6-dev-amd64-cross (2.33-1cross1) ... Setting up libtsan0-amd64-cross (11.3.0-3cross1) ... Setting up cpp-11-x86-64-linux-gnu (11.3.0-3cross1) ... Setting up m4 (1.4.18-5) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libubsan1-amd64-cross (12.1.0-2cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-x86-64-linux-gnu (4:11.2.0-2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgcc-11-dev-amd64-cross (11.3.0-3cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-autoreconf (20) ... Setting up gcc-11-x86-64-linux-gnu (11.3.0-3cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-11-dev-amd64-cross (11.3.0-3cross1) ... Setting up g++-11-x86-64-linux-gnu (11.3.0-3cross1) ... Setting up gcc-x86-64-linux-gnu (4:11.2.0-2) ... Setting up debhelper (13.7.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-x86-64-linux-gnu (4:11.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-amd64 (12.9) ... Setting up libgcc-s1:amd64 (12.1.0-5) ... Setting up libc6:amd64 (2.33-7) ... Setting up libasan8:amd64 (12.1.0-5) ... Setting up libtsan2:amd64 (12.1.0-5) ... Setting up libstdc++6:amd64 (12.1.0-5) ... Setting up liblsan0:amd64 (12.1.0-5) ... Setting up libitm1:amd64 (12.1.0-5) ... Setting up libkeyutils1:amd64 (1.6.3-1) ... Setting up libssl3:amd64 (3.0.4-2) ... Setting up libcrypt1:amd64 (1:4.4.28-1) ... Setting up libcom-err2:amd64 (1.46.5-2) ... Setting up libgomp1:amd64 (12.1.0-5) ... Setting up libkrb5support0:amd64 (1.19.2-2+b2) ... Setting up libquadmath0:amd64 (12.1.0-5) ... Setting up libatomic1:amd64 (12.1.0-5) ... Setting up libk5crypto3:amd64 (1.19.2-2+b2) ... Setting up libubsan1:amd64 (12.1.0-5) ... Setting up libcrypt-dev:amd64 (1:4.4.28-1) ... Setting up libkrb5-3:amd64 (1.19.2-2+b2) ... Setting up libgcc-12-dev:amd64 (12.1.0-5) ... Setting up libgssapi-krb5-2:amd64 (1.19.2-2+b2) ... Setting up libtirpc3:amd64 (1.3.2-2) ... Setting up libtirpc-dev:amd64 (1.3.2-2) ... Setting up libnsl2:amd64 (1.3.0-2) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up libc6-dev:amd64 (2.33-7) ... Setting up libstdc++-12-dev:amd64 (12.1.0-5) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.38.50.20220629-2 dpkg-dev_1.21.8 g++-11_11.3.0-3 gcc-11_11.3.0-3 libc6-dev_2.33-7 libstdc++-11-dev_11.3.0-3 libstdc++-11-dev-amd64-cross_11.3.0-3cross1 libstdc++-12-dev_12.1.0-5 libstdc++6_12.1.0-5 libstdc++6-amd64-cross_12.1.0-2cross1 linux-libc-dev_5.18.5-1 Package versions: adduser_3.121 apt_2.5.1 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-6 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.5.52 bash_5.1-6.1 binutils_2.38.50.20220629-2 binutils-aarch64-linux-gnu_2.38.50.20220629-2 binutils-common_2.38.50.20220629-2 binutils-x86-64-linux-gnu_2.38.50.20220629-2 bsdextrautils_2.38-4 bsdutils_1:2.38-4 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.3.0-3 cpp-11-x86-64-linux-gnu_11.3.0-3cross1 cpp-x86-64-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-amd64_12.9 dash_0.5.11+git20210903+057cd650a4ed-8 debconf_1.5.79 debhelper_13.7.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.2 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.8 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.8 dwz_0.14-1 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:11.2.0-2 g++-11_11.3.0-3 g++-11-x86-64-linux-gnu_11.3.0-3cross1 g++-x86-64-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-11_11.3.0-3 gcc-11-base_11.3.0-3 gcc-11-cross-base_11.3.0-3cross1 gcc-11-x86-64-linux-gnu_11.3.0-3cross1 gcc-11-x86-64-linux-gnu-base_11.3.0-3cross1 gcc-12-base_12.1.0-5 gcc-12-cross-base_12.1.0-2cross1 gcc-x86-64-linux-gnu_4:11.2.0-2 gettext_0.21-6 gettext-base_0.21-6 gpgv_2.2.35-2 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.63 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.5.1 libarchive-zip-perl_1.68-1 libasan6_11.3.0-3 libasan6-amd64-cross_11.3.0-3cross1 libasan8_12.1.0-5 libatomic1_12.1.0-5 libatomic1-amd64-cross_12.1.0-2cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.50.20220629-2 libblkid1_2.38-4 libbz2-1.0_1.0.8-5 libc-bin_2.33-7 libc-dev-bin_2.33-7 libc6_2.33-7 libc6-amd64-cross_2.33-1cross1 libc6-dev_2.33-7 libc6-dev-amd64-cross_2.33-1cross1 libcap-ng0_0.8.3-1 libcap2_1:2.44-1 libcc1-0_12.1.0-5 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-1 libcrypt1_1:4.4.28-1 libctf-nobfd0_2.38.50.20220629-2 libctf0_2.38.50.20220629-2 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liblsan0-amd64-cross_12.1.0-2cross1 liblz4-1_1.9.3-2 liblzma5_5.2.5-2.1 libmagic-mgc_1:5.41-4 libmagic1_1:5.41-4 libmount1_2.38-4 libmpc3_1.2.1-2 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.1-1 libpam-modules_1.4.0-13 libpam-modules-bin_1.4.0-13 libpam-runtime_1.4.0-13 libpam0g_1.4.0-13 libpcre2-8-0_10.40-1 libpcre3_2:8.39-14 libperl5.34_5.34.0-4 libpipeline1_1.5.6-1 libquadmath0_12.1.0-5 libquadmath0-amd64-cross_12.1.0-2cross1 libseccomp2_2.5.4-1 libselinux1_3.4-1 libsemanage-common_3.4-1 libsemanage2_3.4-1 libsepol2_3.4-2 libsigsegv2_2.14-1 libsmartcols1_2.38-4 libssl3_3.0.4-2 libstdc++-11-dev_11.3.0-3 libstdc++-11-dev-amd64-cross_11.3.0-3cross1 libstdc++-12-dev_12.1.0-5 libstdc++6_12.1.0-5 libstdc++6-amd64-cross_12.1.0-2cross1 libsub-override-perl_0.09-3 libsystemd0_251.2-7 libtasn1-6_4.18.0-4 libtinfo6_6.3+20220423-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.7-4 libtsan0_11.3.0-3 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xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mafft Binary: mafft Architecture: any Version: 7.505-1 Maintainer: Debian Med Packaging Team Uploaders: Charles Plessy , Andreas Tille Homepage: https://mafft.cbrc.jp/alignment/software/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/mafft Vcs-Git: https://salsa.debian.org/med-team/mafft.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Package-List: mafft deb science optional arch=any Checksums-Sha1: 37040f606e1d19bfb17ecff80d242b49dc8689a1 621456 mafft_7.505.orig.tar.gz e20b17242d68291288b11cf6a2f27b6f753e5783 7164 mafft_7.505-1.debian.tar.xz Checksums-Sha256: 9b9ee0dea1d493f0fad6f9c227bcc291ddedd045b5558b7fea30dc5932db33b8 621456 mafft_7.505.orig.tar.gz d0317b4d2b4cd3afd5a27657bec696ea2f7e0f1101c858b8c0006c3a1b7a8d54 7164 mafft_7.505-1.debian.tar.xz Files: 4ff0b3ec3401d0e1ffc307a046d8c470 621456 mafft_7.505.orig.tar.gz f6c2cf64d9c7735986ebfd4e33793f37 7164 mafft_7.505-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJGBAEBCgAwFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAmK3X5gSHG5pbGVzaEBk ZWJpYW4ub3JnAAoJEAC650s0M2nxe9kQAIPC6SE5MXvtnPuuCpmnx/Aq9cMr/u6+ HKViOzbF4k15RuMd//fQTXzVCHn4scXr8zHWLMnNw4m4c3jGtr8QC5JtV29PuVjg 2SlC4PNv0SuKV8VQ1dj9DIL3GhnYIWWdILChe/6XeRDSZkVjWTos7TjvZypAGuOc zb3dPTvgLr166kMPtDTumtLLjhCGR4VlDLfnUuhV6BDJWGWd7Gi2mp7HA511H0/I g9DgHmHHJyLT01dfG68ybmkhqxJbKC5SUqx+IRZO50AIqBH0HWdR/Ptp5q4IYGKQ LsUyMTNXDigKaUva65ant1JYDSmxy1qfID1nM6QpLEH/ZLnmOpw/qtHwASc8T+X/ UMkSv2lh7NUVkoalN22ptui0QXfMVaE+XKeryRkqAMRqBxlbCcIh4Ajnte4aI/3h Aie0iZK2/BX39CA3dyPxE4/D6wqzDkcorasfPkZv2rqNa4dewMW2L5iCVhwXt6of CVjKOtICpy6F4/+Oql6wMUbW9PvtIOqRQsKE5gT6b1NFbiW6BdSGTT0AlAkAejVD u6d6ASlu9jZuDpEt8Fd9cy8em84uwAkhjk0mR2JkpsM0/CaoZ1xp0X6PdL0ThU0r s4V4jxNyXv/bn+SNKmc/A4BlbfHt1GHmrlNEHk3er2h1AC+8yR3w1XhEF9UyXc+O mA7gApqRY0Xj =C4X/ -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/tmp/dpkg-verify-sig.DXTTnVtB/trustedkeys.kbx': General error gpgv: Signature made Sat Jun 25 19:18:48 2022 UTC gpgv: using RSA key 3E99A526F5DCC0CBBF1CEEA600BAE74B343369F1 gpgv: issuer "nilesh@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./mafft_7.505-1.dsc dpkg-source: info: extracting mafft in /<> dpkg-source: info: unpacking mafft_7.505.orig.tar.gz dpkg-source: info: unpacking mafft_7.505-1.debian.tar.xz Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-6d70faa4-56a1-4b3c-bcb4-c53bcf0b416c SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package mafft dpkg-buildpackage: info: source version 7.505-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean --sourcedirectory=core dh_auto_clean -O--sourcedirectory=core cd core && make -j1 clean make[1]: Entering directory '/<>/core' rm -f *.o *.a *.exe *~ mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version mafft mafft-homologs.rb mafft-sparsecore.rb libdisttbfast.so libdisttbfast.dylib libdisttbfast.dll *.gcda *.gcno make[1]: Leaving directory '/<>/core' dh_autoreconf_clean -O--sourcedirectory=core debian/rules override_dh_clean make[1]: Entering directory '/<>' rm -rf binaries/* scripts/* dh_clean make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=core dh_update_autotools_config -a -O--sourcedirectory=core dh_autoreconf -a -O--sourcedirectory=core dh_auto_configure -a -O--sourcedirectory=core debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- \ PREFIX=/usr/lib/mafft \ ENABLE_MULTITHREAD=-Denablemultithread \ LIBDIR=/usr/lib/mafft/lib/mafft \ CFLAGS="-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" \ LDFLAGS="-Wl,-z,relro -Wl,-z,now" cd core && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=x86_64-linux-gnu-pkg-config CXX=x86_64-linux-gnu-g\+\+ CC=x86_64-linux-gnu-gcc PREFIX=/usr/lib/mafft ENABLE_MULTITHREAD=-Denablemultithread LIBDIR=/usr/lib/mafft/lib/mafft "CFLAGS=-g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>/core' cp mafftash_premafft.tmpl mafftash_premafft.pl cp seekquencer_premafft.tmpl seekquencer_premafft.pl x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mtxutl.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c io.c io.c: In function ‘PreRead’: io.c:1120:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1120 | fgets( b, B-1, fp ); *locnjob = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c:1125:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1125 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1129:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1129 | fgets( b, B-1, fp ); nleni = atoi( b ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘FRead’: io.c:1165:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1165 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:1255:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1255 | fgets( b, B-1, fp ); nlen[i] = atoi( b ); /* seq i no nagasa */ | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_part_pointer’: io.c:2707:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2707 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2709:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2709 | fgets( b, B, fp ); nseq0 = atoi( b ); // 2020/Oct/23 | ^~~~~~~~~~~~~~~~~ io.c:2715:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2715 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf_pointer’: io.c:2745:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2745 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2746:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2746 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) | ^~~~~~~~~~~~~~~~~ io.c:2751:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2751 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_doublehalf’: io.c:2779:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2779 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2780:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2780 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2781:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2781 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_double’: io.c:2809:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2809 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2810:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2810 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2811:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2811 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_int’: io.c:2839:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2839 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2840:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2840 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2841:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2841 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2_pointer’: io.c:2870:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2870 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2871:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2871 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2872:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2872 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘readhat2’: io.c:2900:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2900 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c:2901:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2901 | fgets( b, B, fp ); b[5] = 0; nseq0 = atoi( b ); if( nseq != nseq0 ) ErrorExit( "hat2 is wrong." ); | ^~~~~~~~~~~~~~~~~ io.c:2902:5: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2902 | fgets( b, B, fp ); | ^~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta_sub’: io.c:3102:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3102 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3117:13: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3117 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadSsearch’: io.c:3136:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3136 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_avscore’: io.c:3264:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3264 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3271:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3271 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3272:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3272 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7_scoreonly’: io.c:3387:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3387 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3394:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3394 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3395:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3395 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadBlastm7’: io.c:3505:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3505 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3512:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3512 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3513:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3513 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34noalign’: io.c:3537:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3537 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_nuc’: io.c:3574:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3574 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3600:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3600 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10’: io.c:3713:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3713 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:3737:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3737 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nucbk’: io.c:3840:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3840 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly_nuc’: io.c:3890:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3890 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34m10_scoreonly’: io.c:3951:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3951 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta34’: io.c:4007:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4007 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c:4033:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4033 | fgets( b, B-1, fp ); // initn: | ^~~~~~~~~~~~~~~~~~~ io.c:4036:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4036 | fgets( b, B-1, fp ); // Smith-Waterman score | ^~~~~~~~~~~~~~~~~~~ io.c:4048:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4048 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta3’: io.c:4070:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4070 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadFasta’: io.c:4095:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4095 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt’: io.c:4132:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4132 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘ReadOpt2’: io.c:4153:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4153 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘readOtherOptions’: io.c:4249:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4249 | fgets( b, B-1, fp ); | ^~~~~~~~~~~~~~~~~~~ io.c: In function ‘loadaamtx’: io.c:5507:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5507 | fgets( inorder, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5539:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5539 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5562:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5562 | fgets( line, 999, mf ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readsubalignmentstable’: io.c:5718:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5718 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c:5739:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5739 | fgets( line, linelen-1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readmccaskill’: io.c:5793:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5793 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5803:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5803 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readpairfoldalign’: io.c:5862:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5862 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5875:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5875 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5882:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5882 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5896:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5896 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c:5902:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 5902 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ io.c: In function ‘readexternalanchors’: io.c:6340:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 6340 | fgets( buf, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mltaln9.c mltaln9.c: In function ‘check_guidetreefile’: mltaln9.c:2850:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 2850 | fgets( string, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c: In function ‘readlocalhomtable2_single_bin_noseek’: mltaln9.c:15685:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15685 | fread( &size, sizeof( int ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15686:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15686 | fread( &opt, sizeof( double ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15689:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15689 | fread( m, size*sizeof( int ), 3, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mltaln9.c:15725:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 15725 | fread( &c, sizeof( char ), 1, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:866, from mltaln.h:12, from mltaln9.c:1: In function ‘fgets’, inlined from ‘check_guidetreefile’ at mltaln9.c:2850:2: /usr/x86_64-linux-gnu/include/bits/stdio2.h:270:16: warning: call to ‘__fgets_chk_warn’ declared with attribute warning: fgets called with bigger size than length of destination buffer [-Wattribute-warning] 270 | return __fgets_chk_warn (__s, __glibc_objsize (__s), __n, __stream); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tddis.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c constants.c In file included from constants.c:7: blosum.c: In function ‘overridematrix’: blosum.c:370:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 370 | fgets( buf, 499, fp ); | ^~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nj.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c partSalignmm.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalignmm.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c rna.c rna.c: In function ‘rnaalifoldcall’: rna.c:225:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 225 | system( cmd ); | ^~~~~~~~~~~~~ rna.c:245:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 245 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ rna.c:285:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 285 | system( cmd ); | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Salignmm.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Dalignmm.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Falign_localhom.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Galign11.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c Lalign11.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c genalign11.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalignmm.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fftFunctions.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c fft.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tditeration.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dvtditr.c dvtditr.c: In function ‘main’: dvtditr.c:1020:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1020 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c defs.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c SAalignmm.c -o SAalignmm.o x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c treeOperation.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addfunctions.c x86_64-linux-gnu-gcc -o dvtditr mtxutl.o io.o mltaln9.o tddis.o constants.o nj.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o MSalignmm.o fftFunctions.o fft.o tditeration.o dvtditr.o defs.o SAalignmm.o treeOperation.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndfast7.c dndfast7.c: In function ‘main’: dndfast7.c:326:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | system( com ); | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o dndfast7 dndfast7.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndblast.c dndblast.c: In function ‘main’: dndblast.c:201:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 201 | system( com ); | ^~~~~~~~~~~~~ dndblast.c:382:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 382 | system( com ); | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o dndblast dndblast.o io.o constants.o mtxutl.o mltaln9.o tddis.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c sextet5.c x86_64-linux-gnu-gcc -o sextet5 io.o constants.o mtxutl.o mltaln9.o tddis.o sextet5.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-distance.c x86_64-linux-gnu-gcc -o mafft-distance io.o constants.o mtxutl.o mltaln9.o tddis.o mafft-distance.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c MSalign11.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c suboptalign11.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalignmain.c x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairlocalalign.c pairlocalalign.c: In function ‘calllast_once’: pairlocalalign.c:1056:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1056 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c:1092:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1092 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx’: pairlocalalign.c:608:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 608 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calllast_fast’: pairlocalalign.c:981:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 981 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘lastcallthread’: pairlocalalign.c:872:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 872 | system( command ); | ^~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readlastresx_singleq’: pairlocalalign.c:374:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 374 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘readhat4’: pairlocalalign.c:1532:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1532 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1544:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1544 | fgets( oneline, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘recalllara’: pairlocalalign.c:1245:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1245 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘callmxscarna_giving_bpp’: pairlocalalign.c:1408:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1408 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1410:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1410 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1430:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1430 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1451:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1451 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1465:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1465 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1485:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1485 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1487:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1487 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘calldafs_giving_bpp’: pairlocalalign.c:1291:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1291 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1293:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1293 | system( com ); | ^~~~~~~~~~~~~ pairlocalalign.c:1313:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1313 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1334:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1334 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1344:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1344 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ pairlocalalign.c:1364:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1364 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1366:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1366 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:1368:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 1368 | fgets( com, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c: In function ‘pairalign_node’: pairlocalalign.c:3467:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3467 | system( "rm -rf hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3468:9: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3468 | system( "mkdir hat3dir" ); // toriaezu | ^~~~~~~~~~~~~~~~~~~~~~~~~ pairlocalalign.c:3473:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3473 | system( fn ); | ^~~~~~~~~~~~ x86_64-linux-gnu-gcc -o pairlocalalign mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairlocalalignmain.o pairlocalalign.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c multi2hat3s.c x86_64-linux-gnu-gcc -o multi2hat3s mtxutl.o io.o mltaln9.o tddis.o constants.o multi2hat3s.o defs.o fft.o fftFunctions.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c pairash.c pairash.c: In function ‘prepareash’: pairash.c:639:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 639 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:681:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 681 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash’: pairash.c:485:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 485 | system( com ); | ^~~~~~~~~~~~~ pairash.c: In function ‘readrash’: pairash.c:277:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 277 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:284:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 284 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:289:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 289 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:294:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 294 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘preparetmalign’: pairash.c:530:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 530 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:576:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 576 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:587:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 587 | system( command ); | ^~~~~~~~~~~~~~~~~ pairash.c: In function ‘checkcbeta’: pairash.c:321:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 321 | fgets( linec, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign’: pairash.c:347:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 347 | system( com ); | ^~~~~~~~~~~~~ pairash.c:356:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 356 | fgets( com, 100, fp ); | ^~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘readtmalign’: pairash.c:228:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 228 | fgets( line, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ pairash.c:232:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 232 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:235:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 235 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c:238:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 238 | fgets( line, nlenmax*2, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ pairash.c: In function ‘callrash.constprop’: pairash.c:428:43: warning: ‘.’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 428 | sprintf( cachefile, "%s/%s.%s.rash", cachedir, fname1, fname2 ); | ^ In file included from /usr/x86_64-linux-gnu/include/stdio.h:866, from mltaln.h:12, from pairash.c:1: /usr/x86_64-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 8 or more bytes (assuming 10007) into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ pairash.c:484:36: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9996 [-Wformat-overflow=] 484 | sprintf( com, "cat %s > %s.rashout", cachefile, pairid ); | ^~ ~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:866, from mltaln.h:12, from pairash.c:1: /usr/x86_64-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 16 and 11014 bytes into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ pairash.c: In function ‘calltmalign.constprop’: pairash.c:346:41: warning: ‘%s’ directive writing up to 9999 bytes into a region of size 9991 [-Wformat-overflow=] 346 | sprintf( com, "mkdir -p %s", cachedir ); | ^~ ~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/stdio.h:866, from mltaln.h:12, from pairash.c:1: /usr/x86_64-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output between 10 and 10009 bytes into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ pairash.c:349:45: warning: ‘-’ directive writing 1 byte into a region of size between 0 and 9999 [-Wformat-overflow=] 349 | sprintf( cachefile, "%s/%s%s-%s%s", cachedir, fname1, chain1, fname2, chain2 ); | ^ In file included from /usr/x86_64-linux-gnu/include/stdio.h:866, from mltaln.h:12, from pairash.c:1: /usr/x86_64-linux-gnu/include/bits/stdio2.h:38:10: note: ‘__builtin___sprintf_chk’ output 3 or more bytes (assuming 10002) into a destination of size 10000 38 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 39 | __glibc_objsize (__s), __fmt, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 40 | __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o pairash mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o MSalignmm.o Galign11.o Lalign11.o genalign11.o MSalign11.o suboptalign11.o SAalignmm.o pairash.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c addsingle.c x86_64-linux-gnu-gcc -o addsingle mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o addsingle.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -o maffttext2hex maffttext2hex.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread maffttext2hex.c: In function ‘main’: maffttext2hex.c:55:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 55 | fgets( (char *)buf, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o hex2maffttext hex2maffttext.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c splittbfast.c splittbfast.c: In function ‘main’: splittbfast.c:3218:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3218 | system( com ); | ^~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o splittbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o splittbfast.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c disttbfast.c disttbfast.c: In function ‘disttbfast’: disttbfast.c:4583:41: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 4583 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o disttbfast mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o disttbfast.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c tbfast.c tbfast.c: In function ‘main’: tbfast.c:3254:33: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 3254 | system( "cp infile.tree GuideTree" ); // tekitou | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o tbfast mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o tbfast.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c nodepair.c x86_64-linux-gnu-gcc -o nodepair mtxutl.o io.o mltaln9.o tddis.o constants.o MSalignmm.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o nodepair.o defs.o fft.o fftFunctions.o addfunctions.o pairlocalalign.o MSalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mafft-profile.c x86_64-linux-gnu-gcc -o mafft-profile io.o mtxutl.o mltaln9.o tddis.o constants.o partSalignmm.o MSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o SAalignmm.o Galign11.o Lalign11.o genalign11.o Falign.o Falign_localhom.o fftFunctions.o fft.o mafft-profile.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c f2cl.c f2cl.c: In function ‘main’: f2cl.c:287:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 287 | fgets( gett, B-1, orderfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o f2cl mtxutl.o io.o f2cl.o constants.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c mccaskillwrap.c mccaskillwrap.c: In function ‘main’: mccaskillwrap.c:372:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 372 | system( "tr -d '\\r' < _mccaskillinorg > _mccaskillin" ); // for cygwin, wakaran | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ mccaskillwrap.c: In function ‘athread’: mccaskillwrap.c:115:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 115 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:117:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 117 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c:129:17: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 129 | system( com ); // for cygwin, wakaran | ^~~~~~~~~~~~~ mccaskillwrap.c:155:25: warning: ignoring return value of ‘system’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 155 | system( com ); | ^~~~~~~~~~~~~ mccaskillwrap.c: In function ‘readrawmccaskill’: mccaskillwrap.c:46:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 46 | fgets( gett, 999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o mccaskillwrap mtxutl.o io.o mccaskillwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c contrafoldwrap.c contrafoldwrap.c: In function ‘readcontrafold’: contrafoldwrap.c:57:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 57 | fgets( gett, 9999, fp ); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o contrafoldwrap mtxutl.o io.o contrafoldwrap.o constants.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c countlen.c x86_64-linux-gnu-gcc -o countlen mtxutl.o io.o countlen.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c seq2regtable.c x86_64-linux-gnu-gcc -o seq2regtable mtxutl.o io.o seq2regtable.o defs.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c regtable2seq.c regtable2seq.c: In function ‘readereg’: regtable2seq.c:69:9: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 69 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c:97:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 97 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ regtable2seq.c: In function ‘readreg’: regtable2seq.c:120:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 120 | fgets( gett, 999, regfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o regtable2seq mtxutl.o io.o regtable2seq.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c score.c x86_64-linux-gnu-gcc -o score io.o mtxutl.o mltaln9.o score.o constants.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c getlag.c x86_64-linux-gnu-gcc -o getlag mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o Dalignmm.o getlag.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c dndpre.c x86_64-linux-gnu-gcc -o dndpre dndpre.o io.o constants.o mtxutl.o mltaln9.o defs.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setcore.c x86_64-linux-gnu-gcc -o setcore mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o setcore.o defs.o fft.o fftFunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wdate-time -D_FORTIFY_SOURCE=2 -c -o filter.o filter.c x86_64-linux-gnu-gcc -o filter mtxutl.o io.o filter.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c replaceu.c x86_64-linux-gnu-gcc -o replaceu mtxutl.o io.o replaceu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c restoreu.c restoreu.c: In function ‘main’: restoreu.c:185:25: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 185 | fgets( gett, 999, dlfp ); | ^~~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o restoreu mtxutl.o io.o restoreu.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c setdirection.c setdirection.c: In function ‘main’: setdirection.c:132:17: warning: ignoring return value of ‘fgets’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 132 | fgets( line, 99, difp ); | ^~~~~~~~~~~~~~~~~~~~~~~ x86_64-linux-gnu-gcc -o setdirection mtxutl.o io.o setdirection.o defs.o mltaln9.o Galign11.o Lalign11.o genalign11.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -c makedirectionlist.c x86_64-linux-gnu-gcc -o makedirectionlist mtxutl.o io.o mltaln9.o tddis.o constants.o partSalignmm.o Lalignmm.o rna.o Salignmm.o Dalignmm.o Falign.o Falign_localhom.o Galign11.o Lalign11.o genalign11.o SAalignmm.o MSalignmm.o makedirectionlist.o defs.o fft.o fftFunctions.o addfunctions.o -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread x86_64-linux-gnu-gcc -o version version.c -Denablemultithread -std=c99 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -lm -lpthread sed "s:_LIBDIR:/usr/lib/mafft/lib/mafft:" mafft.tmpl > mafft sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-homologs.tmpl > mafft-homologs.rb sed "s:_BINDIR:/usr/lib/mafft/bin:" mafft-sparsecore.tmpl > mafft-sparsecore.rb cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. make[2]: Leaving directory '/<>/core' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=core" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=core dh_prep -a -O--sourcedirectory=core debian/rules override_dh_auto_install make[1]: Entering directory '/<>' dh_auto_install -- PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft cd core && make -j1 install DESTDIR=/<>/debian/mafft AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" PREFIX=/usr/lib/mafft MANDIR=/usr/share/man/man1 LIBDIR=/usr/lib/mafft/lib/mafft make[2]: Entering directory '/<>/core' cp mafft mafft-homologs.rb mafft-sparsecore.rb ../scripts chmod 755 ../scripts/* cp mafftash_premafft.pl seekquencer_premafft.pl dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ../binaries chmod 755 ../binaries/* cp mafft.1 mafft-homologs.1 ../binaries done. mkdir -p /<>/debian/mafft/usr/lib/mafft/lib/mafft chmod 755 /<>/debian/mafft/usr/lib/mafft/lib/mafft mkdir -p /<>/debian/mafft/usr/lib/mafft/bin chmod 755 /<>/debian/mafft/usr/lib/mafft/bin chmod 755 mafft mafft-homologs.rb mafft-sparsecore.rb install --strip-program=true mafft mafft-homologs.rb mafft-sparsecore.rb /<>/debian/mafft/usr/lib/mafft/bin install: WARNING: ignoring --strip-program option as -s option was not specified chmod 755 dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # in MinGW, it's ok if this fails strip dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version ||: # may fail for dash_client on mac. strip: Unable to recognise the format of the input file `dvtditr' strip: Unable to recognise the format of the input file `dndfast7' strip: Unable to recognise the format of the input file `dndblast' strip: Unable to recognise the format of the input file `sextet5' strip: Unable to recognise the format of the input file `mafft-distance' strip: Unable to recognise the format of the input file `pairlocalalign' strip: Unable to recognise the format of the input file `multi2hat3s' strip: Unable to recognise the format of the input file `pairash' strip: Unable to recognise the format of the input file `addsingle' strip: Unable to recognise the format of the input file `maffttext2hex' strip: Unable to recognise the format of the input file `hex2maffttext' strip: Unable to recognise the format of the input file `splittbfast' strip: Unable to recognise the format of the input file `disttbfast' strip: Unable to recognise the format of the input file `tbfast' strip: Unable to recognise the format of the input file `nodepair' strip: Unable to recognise the format of the input file `mafft-profile' strip: Unable to recognise the format of the input file `f2cl' strip: Unable to recognise the format of the input file `mccaskillwrap' strip: Unable to recognise the format of the input file `contrafoldwrap' strip: Unable to recognise the format of the input file `countlen' strip: Unable to recognise the format of the input file `seq2regtable' strip: Unable to recognise the format of the input file `regtable2seq' strip: Unable to recognise the format of the input file `score' strip: Unable to recognise the format of the input file `getlag' strip: Unable to recognise the format of the input file `dndpre' strip: Unable to recognise the format of the input file `setcore' strip: Unable to recognise the format of the input file `filter' strip: Unable to recognise the format of the input file `replaceu' strip: Unable to recognise the format of the input file `restoreu' strip: Unable to recognise the format of the input file `setdirection' strip: Unable to recognise the format of the input file `makedirectionlist' strip: Unable to recognise the format of the input file `version' install --strip-program=true dvtditr dndfast7 dndblast sextet5 mafft-distance pairlocalalign multi2hat3s pairash addsingle maffttext2hex hex2maffttext splittbfast disttbfast tbfast nodepair mafft-profile f2cl mccaskillwrap contrafoldwrap countlen seq2regtable regtable2seq score getlag dndpre setcore filter replaceu restoreu setdirection makedirectionlist version /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true mafftash_premafft.pl seekquencer_premafft.pl /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/lib/mafft/lib/mafft install: WARNING: ignoring --strip-program option as -s option was not specified ( cd /<>/debian/mafft/usr/lib/mafft/bin; \ rm -f linsi ginsi einsi fftns fftnsi nwns nwnsi xinsi qinsi; \ rm -f mafft-linsi mafft-ginsi mafft-einsi mafft-fftns mafft-fftnsi mafft-nwns mafft-nwnsi mafft-xinsi mafft-qinsi mafft-randomcore.rb ; \ ln -s mafft linsi; ln -s mafft ginsi; ln -s mafft fftns; \ ln -s mafft fftnsi; ln -s mafft nwns; ln -s mafft nwnsi; \ ln -s mafft einsi; \ ln -s mafft mafft-linsi; ln -s mafft mafft-ginsi; ln -s mafft mafft-fftns; \ ln -s mafft mafft-fftnsi; ln -s mafft mafft-nwns; ln -s mafft mafft-nwnsi; \ ln -s mafft mafft-einsi; ln -s mafft mafft-xinsi; ln -s mafft mafft-qinsi;\ rm -f mafft-profile mafft-profile.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-profile .; \ rm -f mafft-distance mafft-distance.exe; ln -s /usr/lib/mafft/lib/mafft/mafft-distance . ) mkdir -p /<>/debian/mafft/usr/share/man/man1 chmod 755 /<>/debian/mafft/usr/share/man/man1 install --strip-program=true -m 644 mafft.1 mafft-homologs.1 /<>/debian/mafft/usr/share/man/man1 install: WARNING: ignoring --strip-program option as -s option was not specified make[2]: Leaving directory '/<>/core' rm debian/mafft/usr/lib/mafft/lib/mafft/*.1 make[1]: Leaving directory '/<>' dh_installdocs -a -O--sourcedirectory=core dh_installchangelogs -a -O--sourcedirectory=core dh_installman -a -O--sourcedirectory=core dh_installsystemduser -a -O--sourcedirectory=core dh_perl -a -O--sourcedirectory=core dh_link -a -O--sourcedirectory=core dh_strip_nondeterminism -a -O--sourcedirectory=core debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -X test/sample make[1]: Leaving directory '/<>' dh_fixperms -a -O--sourcedirectory=core dh_missing -a -O--sourcedirectory=core dh_dwz -a -O--sourcedirectory=core dh_strip -a -O--sourcedirectory=core dh_makeshlibs -a -O--sourcedirectory=core dh_shlibdeps -a -O--sourcedirectory=core dh_installdeb -a -O--sourcedirectory=core dh_gencontrol -a -O--sourcedirectory=core dh_md5sums -a -O--sourcedirectory=core dh_builddeb -a -O--sourcedirectory=core dpkg-deb: building package 'mafft' in '../mafft_7.505-1_amd64.deb'. dpkg-deb: building package 'mafft-dbgsym' in '../mafft-dbgsym_7.505-1_amd64.deb'. dpkg-genbuildinfo --build=any -O../mafft_7.505-1_amd64.buildinfo dpkg-genchanges --build=any -O../mafft_7.505-1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-07-01T14:37:34Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mafft_7.505-1_amd64.changes: ---------------------------- Format: 1.8 Date: Sun, 26 Jun 2022 00:45:31 +0530 Source: mafft Binary: mafft mafft-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 7.505-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: mafft - Multiple alignment program for amino acid or nucleotide sequences Changes: mafft (7.505-1) unstable; urgency=medium . * Team upload. * New upstream version 7.505 * Removed myself from uploaders Checksums-Sha1: 56a97cf9940ecff477144c0c71fcb49af11d3d35 10766196 mafft-dbgsym_7.505-1_amd64.deb 399e246c0124139d1ad10a7354a932d2cddebb53 4977 mafft_7.505-1_amd64.buildinfo b76cda13ddd5e92a4b719c05fa4dacceb5a8cd09 1080676 mafft_7.505-1_amd64.deb Checksums-Sha256: 59c9bb30d480a352cf25f340aadd5f10d2712a8933abc19f5907abfd6c656bb2 10766196 mafft-dbgsym_7.505-1_amd64.deb 1346933ea45f23b360d211ee66964e6fd7c69c2b264c83bb5972deeb70485c66 4977 mafft_7.505-1_amd64.buildinfo 18d6b4c36208e000b1659e91e472998cd9d41219e5deb9fa59774bd2e032b9f3 1080676 mafft_7.505-1_amd64.deb Files: f2f20f35d1cddbc7fb93a50f3b49ec8e 10766196 debug optional mafft-dbgsym_7.505-1_amd64.deb 43a48a91a9650a45093e0e27ac054ef4 4977 science optional mafft_7.505-1_amd64.buildinfo d1247205f61455ba3ecd2d21ed762ad1 1080676 science optional mafft_7.505-1_amd64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mafft Binary: mafft mafft-dbgsym Architecture: amd64 Version: 7.505-1 Checksums-Md5: f2f20f35d1cddbc7fb93a50f3b49ec8e 10766196 mafft-dbgsym_7.505-1_amd64.deb d1247205f61455ba3ecd2d21ed762ad1 1080676 mafft_7.505-1_amd64.deb Checksums-Sha1: 56a97cf9940ecff477144c0c71fcb49af11d3d35 10766196 mafft-dbgsym_7.505-1_amd64.deb b76cda13ddd5e92a4b719c05fa4dacceb5a8cd09 1080676 mafft_7.505-1_amd64.deb Checksums-Sha256: 59c9bb30d480a352cf25f340aadd5f10d2712a8933abc19f5907abfd6c656bb2 10766196 mafft-dbgsym_7.505-1_amd64.deb 18d6b4c36208e000b1659e91e472998cd9d41219e5deb9fa59774bd2e032b9f3 1080676 mafft_7.505-1_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Fri, 01 Jul 2022 14:37:32 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-6), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.5.52), bash (= 5.1-6.1), binutils (= 2.38.50.20220629-2), binutils-aarch64-linux-gnu (= 2.38.50.20220629-2), binutils-common (= 2.38.50.20220629-2), bsdextrautils (= 2.38-4), bsdutils (= 1:2.38-4), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.3.0-3), dash (= 0.5.11+git20210903+057cd650a4ed-8), debconf (= 1.5.79), debhelper (= 13.7.1), debianutils (= 5.7-0.2), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.8), dpkg-dev (= 1.21.8), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:11.2.0-2), g++-11 (= 11.3.0-3), gcc (= 4:11.2.0-2), gcc-11 (= 11.3.0-3), gcc-11-base (= 11.3.0-3), gcc-12-base (= 12.1.0-5), gettext (= 0.21-6), gettext-base (= 0.21-6), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.63), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-3), libatomic1 (= 12.1.0-5), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.50.20220629-2), libblkid1 (= 2.38-4), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-7), libc-dev-bin (= 2.33-7), libc6 (= 2.33-7), libc6-dev (= 2.33-7), libcap-ng0 (= 0.8.3-1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.1.0-5), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-1), libcrypt1 (= 1:4.4.28-1), libctf-nobfd0 (= 2.38.50.20220629-2), libctf0 (= 2.38.50.20220629-2), libdb5.3 (= 5.3.28+dfsg1-0.9), libdebconfclient0 (= 0.263), libdebhelper-perl (= 13.7.1), libdpkg-perl (= 1.21.8), libelf1 (= 0.187-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-3), libgcc-s1 (= 12.1.0-5), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1), libgdbm6 (= 1.23-1), libgmp10 (= 2:6.2.1+dfsg1-1), libgomp1 (= 12.1.0-5), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.50.20220629-2), libgssapi-krb5-2 (= 1.19.2-2+b2), libhwasan0 (= 12.1.0-5), libicu71 (= 71.1-3), libisl23 (= 0.24-2), libitm1 (= 12.1.0-5), libk5crypto3 (= 1.19.2-2+b2), libkeyutils1 (= 1.6.3-1), libkrb5-3 (= 1.19.2-2+b2), libkrb5support0 (= 1.19.2-2+b2), liblsan0 (= 12.1.0-5), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmount1 (= 2.38-4), libmpc3 (= 1.2.1-2), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-13), libpam-modules-bin (= 1.4.0-13), libpam-runtime (= 1.4.0-13), libpam0g (= 1.4.0-13), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-4), libpipeline1 (= 1.5.6-1), libseccomp2 (= 2.5.4-1), libselinux1 (= 3.4-1), libsigsegv2 (= 2.14-1), libsmartcols1 (= 2.38-4), libssl3 (= 3.0.4-2), libstdc++-11-dev (= 11.3.0-3), libstdc++6 (= 12.1.0-5), libsub-override-perl (= 0.09-3), libsystemd0 (= 251.2-7), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-3), libubsan1 (= 12.1.0-5), libuchardet0 (= 0.0.7-1), libudev1 (= 251.2-7), libunistring2 (= 1.0-1), libuuid1 (= 2.38-4), libxml2 (= 2.9.14+dfsg-1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.18.5-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.10.2-1), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-4), perl-base (= 5.34.0-4), perl-modules-5.34 (= 5.34.0-4), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.03-1), tar (= 1.34+dfsg-1), util-linux (= 2.38-4), util-linux-extra (= 2.38-4), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1656184531" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mafft-dbgsym_7.505-1_amd64.deb ------------------------------ new Debian package, version 2.0. size 10766196 bytes: control archive=2036 bytes. 1635 bytes, 12 lines control 3474 bytes, 33 lines md5sums Package: mafft-dbgsym Source: mafft Version: 7.505-1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 13083 Depends: mafft (= 7.505-1) Section: debug Priority: optional Description: debug symbols for mafft Build-Ids: 1cad12429f8ba33639dca76f7a1f483d10e8875a 2067eba47e86b79cda9f0139e1f55f5a1c66c3a8 28bfdcfa818bbee10e66654f20a3c4b7429c718b 3a0fa8364338f798e5be4c199f61cb490b7e66a2 4676e085c5f49627b056935a36b5d3f546f9e8b1 4b37b7270542cc934fb4e1a2b4a84c462d2199f4 5215ec3d68332165169c928ab30d9fc7063a0289 5b7edd0f10dbd6df9214555c4960b2ef73641645 5bd8a47b7b0261f7a63f9555c9683e613acc768c 5e4a55127bc9076441e2da5101685552a133a9f2 66c35201c063b989b0cb6baa09e3b4879d1489ac 6917e123bcdc3380f528f15dc1828312c14c07d3 69f84396b0bb73e05cca830a16727d4d989b3596 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./usr/lib/debug/.build-id/81/ -rw-r--r-- root/root 639720 2022-06-25 19:15 ./usr/lib/debug/.build-id/81/1b95527c419116e2b27dcb00d8279d15d42fb2.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/8a/ -rw-r--r-- root/root 334944 2022-06-25 19:15 ./usr/lib/debug/.build-id/8a/ee24fa65c0839f50b19e7dc7a5957224b89695.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/8d/ -rw-r--r-- root/root 383128 2022-06-25 19:15 ./usr/lib/debug/.build-id/8d/6d4131e535ffbfb44ce169affb921d7002fa4d.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/8e/ -rw-r--r-- root/root 335568 2022-06-25 19:15 ./usr/lib/debug/.build-id/8e/e6e51e42513fde3ccb77cfeda9271563cdecf7.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/8f/ -rw-r--r-- root/root 8240 2022-06-25 19:15 ./usr/lib/debug/.build-id/8f/08779272b22623f82130a0ca78671ae9bed5a4.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/a8/ -rw-r--r-- root/root 605736 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./usr/lib/debug/.build-id/d0/b8ed520f61fa9d73acbf7031e2901a754be291.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/d8/ -rw-r--r-- root/root 397152 2022-06-25 19:15 ./usr/lib/debug/.build-id/d8/a86de45485e008282e75b7a07582194d3e1089.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/de/ -rw-r--r-- root/root 8712 2022-06-25 19:15 ./usr/lib/debug/.build-id/de/5edada5f4465e947e3410ca920ef7c0d46f9e1.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/e8/ -rw-r--r-- root/root 682856 2022-06-25 19:15 ./usr/lib/debug/.build-id/e8/906fa057c7a7bb314fdeb68875f7beadcebc83.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 366512 2022-06-25 19:15 ./usr/lib/debug/.build-id/eb/6ecd47ee714a9a728ffdd8e9a3bd4eefdea043.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.build-id/fe/ -rw-r--r-- root/root 160704 2022-06-25 19:15 ./usr/lib/debug/.build-id/fe/383f72f515a4a7297f5782c2383bc56d1a12b7.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.dwz/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/debug/.dwz/x86_64-linux-gnu/ -rw-r--r-- root/root 31864 2022-06-25 19:15 ./usr/lib/debug/.dwz/x86_64-linux-gnu/mafft.debug drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/doc/mafft-dbgsym -> mafft mafft_7.505-1_amd64.deb ----------------------- new Debian package, version 2.0. size 1080676 bytes: control archive=2368 bytes. 1387 bytes, 30 lines control 3848 bytes, 55 lines md5sums Package: mafft Version: 7.505-1 Architecture: amd64 Maintainer: Debian Med Packaging Team Installed-Size: 11923 Depends: libc6 (>= 2.29), perl:any Recommends: blast2, libwww-perl, lynx, ruby Enhances: t-coffee Section: science Priority: optional Homepage: https://mafft.cbrc.jp/alignment/software/ Description: Multiple alignment program for amino acid or nucleotide sequences MAFFT is a multiple sequence alignment program which offers three accuracy-oriented methods: * L-INS-i (probably most accurate; recommended for <200 sequences; iterative refinement method incorporating local pairwise alignment information), * G-INS-i (suitable for sequences of similar lengths; recommended for <200 sequences; iterative refinement method incorporating global pairwise alignment information), * E-INS-i (suitable for sequences containing large unalignable regions; recommended for <200 sequences), and five speed-oriented methods: * FFT-NS-i (iterative refinement method; two cycles only), * FFT-NS-i (iterative refinement method; max. 1000 iterations), * FFT-NS-2 (fast; progressive method), * FFT-NS-1 (very fast; recommended for >2000 sequences; progressive method with a rough guide tree), * NW-NS-PartTree-1 (recommended for ∼50,000 sequences; progressive method with the PartTree algorithm). drwxr-xr-x root/root 0 2022-06-25 19:15 ./ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/bin/ lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/bin/mafft -> ../lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/bin/mafft-homologs -> ../lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/bin/mafft-profile -> ../lib/mafft/bin/mafft-profile drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/mafft/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/ lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/einsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/fftns -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/fftnsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/ginsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/linsi -> mafft -rwxr-xr-x root/root 108945 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-distance -> ../lib/mafft/mafft-distance lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-einsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-fftns -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-fftnsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-ginsi -> mafft -rwxr-xr-x root/root 11551 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-homologs.rb lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-linsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-nwns -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-nwnsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-profile -> ../lib/mafft/mafft-profile lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-qinsi -> mafft -rwxr-xr-x root/root 7788 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-sparsecore.rb lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/mafft-xinsi -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/nwns -> mafft lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/lib/mafft/bin/nwnsi -> mafft drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/mafft/lib/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/ -rwxr-xr-x root/root 592224 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/addsingle -rwxr-xr-x root/root 321888 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/contrafoldwrap -rwxr-xr-x root/root 104912 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/countlen -rwxr-xr-x root/root 612704 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/disttbfast -rwxr-xr-x root/root 334176 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/dndblast -rwxr-xr-x root/root 334176 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/dndfast7 -rwxr-xr-x root/root 321888 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/dndpre -rwxr-xr-x root/root 608608 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/dvtditr -rwxr-xr-x root/root 162144 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/f2cl -rwxr-xr-x root/root 264656 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/filter -rwxr-xr-x root/root 543072 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/getlag -rwxr-xr-x root/root 14568 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/hex2maffttext -rwxr-xr-x root/root 334176 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/mafft-distance -rwxr-xr-x root/root 543072 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/mafft-profile -rwxr-xr-x root/root 10475 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/mafftash_premafft.pl -rwxr-xr-x root/root 14568 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/maffttext2hex -rwxr-xr-x root/root 567664 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/makedirectionlist -rwxr-xr-x root/root 321888 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/mccaskillwrap -rwxr-xr-x root/root 342368 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/multi2hat3s -rwxr-xr-x root/root 600416 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/nodepair -rwxr-xr-x root/root 551264 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/pairash -rwxr-xr-x root/root 575840 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/pairlocalalign -rwxr-xr-x root/root 268752 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/regtable2seq -rwxr-xr-x root/root 264656 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/replaceu -rwxr-xr-x root/root 268752 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/restoreu -rwxr-xr-x root/root 317792 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/score -rwxr-xr-x root/root 15541 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/seekquencer_premafft.pl -rwxr-xr-x root/root 104912 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/seq2regtable -rwxr-xr-x root/root 543072 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/setcore -rwxr-xr-x root/root 264664 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/setdirection -rwxr-xr-x root/root 334176 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/sextet5 -rwxr-xr-x root/root 567648 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/splittbfast -rwxr-xr-x root/root 645472 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/tbfast -rwxr-xr-x root/root 14568 2022-06-25 19:15 ./usr/lib/mafft/lib/mafft/version drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/doc/mafft/ -rw-r--r-- root/root 4095 2022-06-25 19:15 ./usr/share/doc/mafft/changelog.Debian.gz -rw-r--r-- root/root 2013 2021-11-02 13:29 ./usr/share/doc/mafft/copyright drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/doc/mafft/test/ -rw-r--r-- root/root 16616 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample -rw-r--r-- root/root 30112 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.dpparttree -rw-r--r-- root/root 28816 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.fftns2 -rw-r--r-- root/root 28996 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.fftnsi -rw-r--r-- root/root 29896 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.gins1 -rw-r--r-- root/root 29572 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.ginsi -rw-r--r-- root/root 41380 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.ginsi.allowshift -rw-r--r-- root/root 28888 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.lins1 -rw-r--r-- root/root 29500 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.linsi -rw-r--r-- root/root 30112 2022-04-10 07:14 ./usr/share/doc/mafft/test/sample.parttree -rw-r--r-- root/root 1502 2022-04-10 07:14 ./usr/share/doc/mafft/test/samplerna -rw-r--r-- root/root 1916 2022-04-10 07:14 ./usr/share/doc/mafft/test/samplerna.qinsi -rw-r--r-- root/root 1916 2022-04-10 07:14 ./usr/share/doc/mafft/test/samplerna.xinsi -rw-r--r-- root/root 908 2022-04-10 07:14 ./usr/share/doc/mafft/test/script drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/man/ drwxr-xr-x root/root 0 2022-06-25 19:15 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/ginsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-einsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-fftns.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-fftnsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-ginsi.1.gz -> mafft.1.gz -rw-r--r-- root/root 2130 2022-06-25 19:15 ./usr/share/man/man1/mafft-homologs.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-linsi.1.gz -> mafft.1.gz lrwxrwxrwx root/root 0 2022-06-25 19:15 ./usr/share/man/man1/mafft-profile.1.gz -> mafft.1.gz -rw-r--r-- root/root 4421 2022-06-25 19:15 ./usr/share/man/man1/mafft.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [533 B] Get:5 copy:/<>/apt_archive ./ Packages [618 B] Fetched 2114 B in 0s (49.6 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libhttp-server-simple-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 133 newly installed, 0 to remove and 0 not upgraded. Need to get 14.0 MB of archives. After this operation, 51.9 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian sid/main arm64 readline-common all 8.1.2-1.2 [73.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libreadline8 arm64 8.1.2-1.2 [160 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 netbase all 6.3 [19.9 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 openssl arm64 3.0.4-2 [1389 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 ca-certificates all 20211016 [156 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 diffstat arm64 1.64-1 [34.6 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libassuan0 arm64 2.5.5-4 [48.9 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 gpgconf arm64 2.2.35-2 [570 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 libsqlite3-0 arm64 3.39.0-1 [784 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 gpg arm64 2.2.35-2 [916 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 iso-codes all 4.10.0-1 [2825 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 libaliased-perl all 0.34-2 [14.2 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libapt-pkg-perl arm64 0.1.40+b1 [69.2 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 libb-hooks-op-check-perl arm64 0.22-2 [11.2 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 libdynaloader-functions-perl all 0.003-2 [13.1 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 libdevel-callchecker-perl arm64 0.008-1+b3 [15.8 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 libparams-classify-perl arm64 0.015-2 [25.4 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-progressive-perl all 0.001013-2 [8044 B] Get:23 http://mirror.einval.org/debian sid/main arm64 libvariable-magic-perl arm64 0.62-2 [44.3 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 libberkeleydb-perl arm64 0.64-1+b2 [120 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libhtml-tagset-perl all 3.20-4 [13.0 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libhtml-parser-perl arm64 3.78-1 [103 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libcgi-pm-perl all 4.54-1 [224 kB] Get:31 http://mirror.einval.org/debian sid/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://mirror.einval.org/debian sid/main arm64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libclass-xsaccessor-perl arm64 1.19-3+b8 [36.4 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libclone-perl arm64 0.45-1+b2 [15.3 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 libparams-util-perl arm64 1.102-1+b2 [25.2 kB] Get:37 http://mirror.einval.org/debian sid/main arm64 libsub-install-perl all 0.928-2 [11.0 kB] Get:38 http://mirror.einval.org/debian sid/main arm64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://mirror.einval.org/debian sid/main arm64 libcpanel-json-xs-perl arm64 4.30-1 [128 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:43 http://mirror.einval.org/debian sid/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libexporter-tiny-perl all 1.002002-1 [37.8 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-xs-perl arm64 0.430-3 [36.7 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libdata-messagepack-perl arm64 1.02-1 [34.6 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libnet-domain-tld-perl all 1.75-2 [33.7 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2 [103 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 libdevel-size-perl arm64 0.83-1+b3 [25.8 kB] Get:59 http://mirror.einval.org/debian sid/main arm64 libemail-address-xs-perl arm64 1.04-1+b4 [26.7 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libnumber-compare-perl all 0.03-2 [7448 B] Get:64 http://mirror.einval.org/debian sid/main arm64 libtext-glob-perl all 0.11-2 [8992 B] Get:65 http://mirror.einval.org/debian sid/main arm64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libhttp-date-perl all 6.05-1 [10.4 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libhtml-form-perl all 6.07-1 [22.9 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libhtml-tree-perl all 5.07-2 [213 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 perl-openssl-defaults arm64 7+b1 [7924 B] Get:79 http://mirror.einval.org/debian sid/main arm64 libnet-ssleay-perl arm64 1.92-2 [338 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libnet-http-perl all 6.22-1 [25.3 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libwww-perl all 6.67-1 [194 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libhttp-server-simple-perl all 0.52-2 [29.4 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:89 http://mirror.einval.org/debian sid/main arm64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 liblz1 arm64 1.13-3 [40.7 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libmldbm-perl all 2.05-3 [18.8 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:103 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b2 [171 kB] Get:104 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:105 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-2 [11.9 kB] Get:106 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b2 [13.5 kB] Get:107 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:108 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:109 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.20-1 [17.1 kB] Get:110 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1+b1 [11.9 kB] Get:111 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1+b1 [46.4 kB] Get:112 http://mirror.einval.org/debian sid/main arm64 libregexp-wildcards-perl all 1.05-2 [14.1 kB] Get:113 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.023+ds-1 [95.0 kB] Get:114 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.023+ds-1 [97.9 kB] Get:115 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:116 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.24-1 [52.0 kB] Get:117 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.27-1 [28.2 kB] Get:118 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b3 [27.2 kB] Get:119 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-5 [8704 B] Get:120 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1+b1 [13.4 kB] Get:121 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1+b1 [194 kB] Get:122 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:123 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b4 [74.7 kB] Get:124 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b3 [19.8 kB] Get:125 http://mirror.einval.org/debian sid/main arm64 libwww-mechanize-perl all 2.09-1 [115 kB] Get:126 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:127 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1+b1 [34.4 kB] Get:128 http://mirror.einval.org/debian sid/main arm64 plzip arm64 1.10-3 [60.5 kB] Get:129 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:130 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:131 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:132 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:133 http://mirror.einval.org/debian sid/main arm64 lintian all 2.115.2 [1416 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 14.0 MB in 0s (49.7 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19524 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1.2-1.2_all.deb ... Unpacking readline-common (8.1.2-1.2) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1.2-1.2_arm64.deb ... Unpacking libreadline8:arm64 (8.1.2-1.2) ... Selecting previously unselected package netbase. Preparing to unpack .../002-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package openssl. Preparing to unpack .../003-openssl_3.0.4-2_arm64.deb ... Unpacking openssl (3.0.4-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../004-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../005-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../006-libassuan0_2.5.5-4_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.35-2_arm64.deb ... Unpacking gpgconf (2.2.35-2) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.39.0-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.39.0-1) ... Selecting previously unselected package gpg. Preparing to unpack .../009-gpg_2.2.35-2_arm64.deb ... Unpacking gpg (2.2.35-2) ... Selecting previously unselected package iso-codes. Preparing to unpack .../010-iso-codes_4.10.0-1_all.deb ... Unpacking iso-codes (4.10.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../011-libaliased-perl_0.34-2_all.deb ... Unpacking libaliased-perl (0.34-2) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../012-libapt-pkg-perl_0.1.40+b1_arm64.deb ... Unpacking libapt-pkg-perl (0.1.40+b1) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../013-libb-hooks-op-check-perl_0.22-2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../014-libdynaloader-functions-perl_0.003-2_all.deb ... Unpacking libdynaloader-functions-perl (0.003-2) ... Selecting previously unselected package libdevel-callchecker-perl. Preparing to unpack .../015-libdevel-callchecker-perl_0.008-1+b3_arm64.deb ... Unpacking libdevel-callchecker-perl (0.008-1+b3) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../016-libparams-classify-perl_0.015-2_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../017-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../018-libtry-tiny-perl_0.31-1_all.deb ... Unpacking libtry-tiny-perl (0.31-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../019-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../020-libsub-exporter-progressive-perl_0.001013-2_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-2) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../021-libvariable-magic-perl_0.62-2_arm64.deb ... Unpacking libvariable-magic-perl (0.62-2) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../022-libb-hooks-endofscope-perl_0.26-1_all.deb ... 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Preparing to unpack .../132-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b1) ... Setting up liblz1:arm64 (1.13-3) ... Setting up libberkeleydb-perl:arm64 (0.64-1+b2) ... Setting up plzip (1.10-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:arm64 (4.30-1) ... Setting up libhtml-tagset-perl (3.20-4) ... Setting up libdevel-size-perl (0.83-1+b3) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:arm64 (3.39.0-1) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:arm64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b4) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:arm64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:arm64 (4.023+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.24-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-2) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b8) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libterm-readkey-perl (2.38-1+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.4-2) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up readline-common (8.1.2-1.2) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.023+ds-1) ... Setting up libmarkdown2:arm64 (2.2.7-2) ... Setting up liburi-perl (5.10-1) ... Setting up iso-codes (4.10.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.04-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.92-2) ... Setting up libhttp-date-perl (6.05-1) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:arm64 (8.1.2-1.2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:arm64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.78-1) ... Setting up gpgconf (2.2.35-2) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up gpg (2.2.35-2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.07-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:arm64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libhttp-server-simple-perl (0.52-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.09-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.2) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.33-7) ... Processing triggers for man-db (2.10.2-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 130024 Build-Time: 182 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 38 Job: mafft_7.505-1 Lintian: pass Machine Architecture: arm64 Package: mafft Package-Time: 250 Source-Version: 7.505-1 Space: 130024 Status: successful Version: 7.505-1 -------------------------------------------------------------------------------- Finished at 2022-07-01T14:37:34Z Build needed 00:04:10, 130024k disk space