sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | maq 0.7.1-8 (arm64) Thu, 22 Aug 2019 17:02:57 +0000 | +==============================================================================+ Package: maq Version: 0.7.1-8 Source Version: 0.7.1-8 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-3de8c002-33fd-492d-a384-42f42a3e068d' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-22-0819.19.pdiff [6564 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-22-1415.40.pdiff [13.2 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-08-22-1415.40.pdiff [13.2 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-22-0819.19.pdiff [43.7 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-22-1415.40.pdiff [15.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-08-22-1415.40.pdiff [15.2 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 Packages [8210 kB] Fetched 8483 kB in 2s (4310 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: binutils binutils-common binutils-x86-64-linux-gnu libbinutils libgdbm-compat4 libgdbm6 libsystemd0 libudev1 8 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 4824 kB of archives. After this operation, 41.0 kB of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 libsystemd0 amd64 242-4 [342 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libudev1 amd64 242-4 [158 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 binutils amd64 2.32.51.20190821-2 [57.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-x86-64-linux-gnu amd64 2.32.51.20190821-2 [1609 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libbinutils amd64 2.32.51.20190821-2 [468 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-common amd64 2.32.51.20190821-2 [2081 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libgdbm6 amd64 1.18.1-5 [64.5 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libgdbm-compat4 amd64 1.18.1-5 [44.2 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 4824 kB in 0s (51.0 MB/s) (Reading database ... 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Unpacking libbinutils:amd64 (2.32.51.20190821-2) over (2.32.51.20190821-1) ... Preparing to unpack .../3-binutils-common_2.32.51.20190821-2_amd64.deb ... Unpacking binutils-common:amd64 (2.32.51.20190821-2) over (2.32.51.20190821-1) ... Preparing to unpack .../4-libgdbm6_1.18.1-5_amd64.deb ... Unpacking libgdbm6:amd64 (1.18.1-5) over (1.18.1-4+b1) ... Preparing to unpack .../5-libgdbm-compat4_1.18.1-5_amd64.deb ... Unpacking libgdbm-compat4:amd64 (1.18.1-5) over (1.18.1-4+b1) ... Setting up binutils-common:amd64 (2.32.51.20190821-2) ... Setting up libbinutils:amd64 (2.32.51.20190821-2) ... Setting up libgdbm6:amd64 (1.18.1-5) ... Setting up binutils-x86-64-linux-gnu (2.32.51.20190821-2) ... Setting up binutils (2.32.51.20190821-2) ... Setting up libgdbm-compat4:amd64 (1.18.1-5) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'maq' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/maq.git Please use: git clone https://salsa.debian.org/med-team/maq.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 411 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main maq 0.7.1-8 (dsc) [1943 B] Get:2 http://debian.oregonstate.edu/debian unstable/main maq 0.7.1-8 (tar) [398 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main maq 0.7.1-8 (diff) [11.1 kB] Fetched 411 kB in 0s (9127 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/maq-QPrb6i/maq-0.7.1' with '<>' I: NOTICE: Log filtering will replace 'build/maq-QPrb6i' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/<>/resolver-KxGvll/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/<>/resolver-KxGvll/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KxGvll/apt_archive ./ Release [957 B] Ign:3 copy:/<>/resolver-KxGvll/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KxGvll/apt_archive ./ Sources [362 B] Get:5 copy:/<>/resolver-KxGvll/apt_archive ./ Packages [448 B] Fetched 1767 B in 0s (101 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-aarch64-linux-gnu cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-9-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sensible-utils ucf Suggested packages: binutils-doc gcc-9-locales cpp-doc binutils-multiarch gcc-9-doc libstdc++6-9-dbg-arm64-cross libgcc1-dbg-arm64-cross libgomp1-dbg-arm64-cross libitm1-dbg-arm64-cross libatomic1-dbg-arm64-cross libasan5-dbg-arm64-cross liblsan0-dbg-arm64-cross libtsan0-dbg-arm64-cross libubsan1-dbg-arm64-cross libquadmath0-dbg-arm64-cross manpages-dev autoconf automake libtool flex bison gdb-aarch64-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-aarch64-linux-gnu cpp-9-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 dpkg-cross file g++-9-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-9-aarch64-linux-gnu gcc-9-aarch64-linux-gnu-base gcc-9-cross-base gcc-aarch64-linux-gnu libasan5-arm64-cross libatomic1-arm64-cross libc6-arm64-cross libc6-dev-arm64-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-9-dev-arm64-cross libgcc1-arm64-cross libgomp1-arm64-cross libicu63 libio-string-perl libitm1-arm64-cross liblocale-gettext-perl liblsan0-arm64-cross libmagic-mgc libmagic1 libstdc++-9-dev-arm64-cross libstdc++6-arm64-cross libtsan0-arm64-cross libubsan1-arm64-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross sbuild-build-depends-core-dummy:arm64 sensible-utils ucf 0 upgraded, 47 newly installed, 0 to remove and 0 not upgraded. Need to get 42.9 MB of archives. After this operation, 166 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KxGvll/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-aarch64-linux-gnu amd64 2.32.51.20190821-2 [2771 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu-base amd64 9.2.1-1cross1 [192 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [6531 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-aarch64-linux-gnu amd64 4:9.2.1-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-1cross1 [187 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-arm64-cross all 2.28-10cross5 [1312 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-arm64-cross all 1:9.2.1-1cross1 [34.0 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-arm64-cross all 9.2.1-1cross1 [76.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-arm64-cross all 9.2.1-1cross1 [24.2 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-arm64-cross all 9.2.1-1cross1 [8648 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-arm64-cross all 9.2.1-1cross1 [347 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 liblsan0-arm64-cross all 9.2.1-1cross1 [121 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libtsan0-arm64-cross all 9.2.1-1cross1 [267 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-arm64-cross all 9.2.1-1cross1 [415 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-arm64-cross all 9.2.1-1cross1 [117 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-arm64-cross all 9.2.1-1cross1 [879 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [6887 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-aarch64-linux-gnu amd64 4:9.2.1-1 [1456 B] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-arm64-cross all 5.2.7-1cross5 [1305 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-arm64-cross all 2.28-10cross5 [2324 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-arm64-cross all 9.2.1-1cross1 [1630 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-aarch64-linux-gnu amd64 9.2.1-1cross1 [7106 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:9.2.1-1 [1176 B] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-arm64 all 12.6 [6572 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 42.9 MB in 1s (55.4 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 13038 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.37-5_amd64.deb ... Unpacking libmagic-mgc (1:5.37-5) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.37-5_amd64.deb ... Unpacking libmagic1:amd64 (1:5.37-5) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.37-5_amd64.deb ... Unpacking file (1:5.37-5) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package binutils-aarch64-linux-gnu. Preparing to unpack .../06-binutils-aarch64-linux-gnu_2.32.51.20190821-2_amd64.deb ... Unpacking binutils-aarch64-linux-gnu (2.32.51.20190821-2) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu-base:amd64. Preparing to unpack .../07-gcc-9-aarch64-linux-gnu-base_9.2.1-1cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-1cross1) ... Selecting previously unselected package cpp-9-aarch64-linux-gnu. Preparing to unpack .../08-cpp-9-aarch64-linux-gnu_9.2.1-1cross1_amd64.deb ... Unpacking cpp-9-aarch64-linux-gnu (9.2.1-1cross1) ... Selecting previously unselected package cpp-aarch64-linux-gnu. Preparing to unpack .../09-cpp-aarch64-linux-gnu_4%3a9.2.1-1_amd64.deb ... Unpacking cpp-aarch64-linux-gnu (4:9.2.1-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../10-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base. Preparing to unpack .../11-gcc-9-cross-base_9.2.1-1cross1_all.deb ... Unpacking gcc-9-cross-base (9.2.1-1cross1) ... Selecting previously unselected package libc6-arm64-cross. Preparing to unpack .../12-libc6-arm64-cross_2.28-10cross5_all.deb ... Unpacking libc6-arm64-cross (2.28-10cross5) ... Selecting previously unselected package libgcc1-arm64-cross. Preparing to unpack .../13-libgcc1-arm64-cross_1%3a9.2.1-1cross1_all.deb ... Unpacking libgcc1-arm64-cross (1:9.2.1-1cross1) ... Selecting previously unselected package libgomp1-arm64-cross. Preparing to unpack .../14-libgomp1-arm64-cross_9.2.1-1cross1_all.deb ... Unpacking libgomp1-arm64-cross (9.2.1-1cross1) ... Selecting previously unselected package libitm1-arm64-cross. Preparing to unpack .../15-libitm1-arm64-cross_9.2.1-1cross1_all.deb ... Unpacking libitm1-arm64-cross (9.2.1-1cross1) ... Selecting previously unselected package libatomic1-arm64-cross. 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Preparing to unpack .../21-libubsan1-arm64-cross_9.2.1-1cross1_all.deb ... Unpacking libubsan1-arm64-cross (9.2.1-1cross1) ... Selecting previously unselected package libgcc-9-dev-arm64-cross. Preparing to unpack .../22-libgcc-9-dev-arm64-cross_9.2.1-1cross1_all.deb ... Unpacking libgcc-9-dev-arm64-cross (9.2.1-1cross1) ... Selecting previously unselected package gcc-9-aarch64-linux-gnu. Preparing to unpack .../23-gcc-9-aarch64-linux-gnu_9.2.1-1cross1_amd64.deb ... Unpacking gcc-9-aarch64-linux-gnu (9.2.1-1cross1) ... Selecting previously unselected package gcc-aarch64-linux-gnu. Preparing to unpack .../24-gcc-aarch64-linux-gnu_4%3a9.2.1-1_amd64.deb ... Unpacking gcc-aarch64-linux-gnu (4:9.2.1-1) ... Selecting previously unselected package linux-libc-dev-arm64-cross. Preparing to unpack .../25-linux-libc-dev-arm64-cross_5.2.7-1cross5_all.deb ... Unpacking linux-libc-dev-arm64-cross (5.2.7-1cross5) ... Selecting previously unselected package libc6-dev-arm64-cross. 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Preparing to unpack .../31-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../32-libicu63_63.2-2_amd64.deb ... Unpacking libicu63:amd64 (63.2-2) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../33-libxml2_2.9.4+dfsg1-7+b3_amd64.deb ... Unpacking libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../34-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../35-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../36-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../37-libxml-libxml-perl_2.0134+dfsg-1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../38-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../39-libyaml-perl_1.29-1_all.deb ... Unpacking libyaml-perl (1.29-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../40-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../41-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../42-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../43-libdebian-dpkgcross-perl_2.6.15-3_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-3) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../44-dpkg-cross_2.6.15-3_all.deb ... Unpacking dpkg-cross (2.6.15-3) ... Selecting previously unselected package crossbuild-essential-arm64. Preparing to unpack .../45-crossbuild-essential-arm64_12.6_all.deb ... Unpacking crossbuild-essential-arm64 (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:arm64. Preparing to unpack .../46-sbuild-build-depends-core-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up gcc-9-aarch64-linux-gnu-base:amd64 (9.2.1-1cross1) ... Setting up libmagic1:amd64 (1:5.37-5) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up binutils-aarch64-linux-gnu (2.32.51.20190821-2) ... Setting up cpp-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up cpp-aarch64-linux-gnu (4:9.2.1-1) ... Setting up cross-config (2.6.15-3) ... Setting up libc6-arm64-cross (2.28-10cross5) ... Setting up gcc-9-cross-base (9.2.1-1cross1) ... Setting up linux-libc-dev-arm64-cross (5.2.7-1cross5) ... Setting up sensible-utils (0.0.12) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libatomic1-arm64-cross (9.2.1-1cross1) ... Setting up libgcc1-arm64-cross (1:9.2.1-1cross1) ... Setting up liblsan0-arm64-cross (9.2.1-1cross1) ... Setting up libgomp1-arm64-cross (9.2.1-1cross1) ... Setting up libtsan0-arm64-cross (9.2.1-1cross1) ... Setting up libc6-dev-arm64-cross (2.28-10cross5) ... Setting up libasan5-arm64-cross (9.2.1-1cross1) ... Setting up libstdc++6-arm64-cross (9.2.1-1cross1) ... Setting up libitm1-arm64-cross (9.2.1-1cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-arm64-cross (9.2.1-1cross1) ... Setting up libgcc-9-dev-arm64-cross (9.2.1-1cross1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-9-dev-arm64-cross (9.2.1-1cross1) ... Setting up gcc-aarch64-linux-gnu (4:9.2.1-1) ... Setting up g++-9-aarch64-linux-gnu (9.2.1-1cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-aarch64-linux-gnu (4:9.2.1-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-arm64 (12.6) ... Setting up sbuild-build-depends-core-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/<>/resolver-KxGvll/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/<>/resolver-KxGvll/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KxGvll/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-KxGvll/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KxGvll/apt_archive ./ Sources [484 B] Get:5 copy:/<>/resolver-KxGvll/apt_archive ./ Packages [565 B] Fetched 2012 B in 0s (109 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:arm64 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/<>/resolver-KxGvll/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:arm64. (Reading database ... 16382 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_arm64.deb ... Unpacking sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:arm64 (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-maq-dummy' in '/<>/resolver-KxGvll/apt_archive/sbuild-build-depends-maq-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-maq-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/<>/resolver-KxGvll/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KxGvll/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-KxGvll/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KxGvll/apt_archive ./ Sources [639 B] Get:5 copy:/<>/resolver-KxGvll/apt_archive ./ Packages [721 B] Fetched 2323 B in 0s (113 kB/s) Reading package lists... Reading package lists... Install maq build dependencies (apt-based resolver) --------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-9-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 manpages-dev:arm64 libstdc++-9-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-9-base:arm64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:arm64 libatomic1:arm64 libbsd0 libc6:arm64 libc6-dev:arm64 libcroco3 libelf1 libfile-stripnondeterminism-perl libgcc-9-dev:arm64 libgcc1:arm64 libglib2.0-0 libgomp1:arm64 libitm1:arm64 liblsan0:arm64 libncurses6 libpipeline1 libsigsegv2 libstdc++-9-dev:arm64 libstdc++6:arm64 libsub-override-perl libtool libtsan0:arm64 libubsan1:arm64 libuchardet0 linux-libc-dev:arm64 m4 man-db po-debconf sbuild-build-depends-maq-dummy:arm64 zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 46 newly installed, 0 to remove and 0 not upgraded. Need to get 20.2 MB of archives. After this operation, 95.7 MB of additional disk space will be used. Get:1 copy:/<>/resolver-KxGvll/apt_archive ./ sbuild-build-depends-maq-dummy 0.invalid.0 [884 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.6.1-1 [1295 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main arm64 gcc-9-base arm64 9.2.1-3 [192 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.5.0-1 [22.8 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.5.0-1 [14.1 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.3 [1036 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc1 arm64 1:9.2.1-3 [34.1 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main arm64 libc6 arm64 2.28-10 [2521 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main arm64 libasan5 arm64 9.2.1-3 [354 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main arm64 libatomic1 arm64 9.2.1-3 [8836 B] Get:35 http://debian.oregonstate.edu/debian unstable/main arm64 linux-libc-dev arm64 5.2.9-2 [1214 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main arm64 libc6-dev arm64 2.28-10 [2324 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main arm64 libgomp1 arm64 9.2.1-3 [78.4 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main arm64 libitm1 arm64 9.2.1-3 [24.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main arm64 liblsan0 arm64 9.2.1-3 [122 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main arm64 libtsan0 arm64 9.2.1-3 [274 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++6 arm64 9.2.1-3 [455 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main arm64 libubsan1 arm64 9.2.1-3 [118 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main arm64 libgcc-9-dev arm64 9.2.1-3 [878 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main arm64 libstdc++-9-dev arm64 9.2.1-3 [1633 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g arm64 1:1.2.11.dfsg-1+b1 [88.4 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main arm64 zlib1g-dev arm64 1:1.2.11.dfsg-1+b1 [208 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 20.2 MB in 0s (50.8 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 16382 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.8.6.1-1_amd64.deb ... Unpacking man-db (2.8.6.1-1) ... Selecting previously unselected package gcc-9-base:arm64. Preparing to unpack .../06-gcc-9-base_9.2.1-3_arm64.deb ... Unpacking gcc-9-base:arm64 (9.2.1-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../07-gettext-base_0.19.8.1-9_amd64.deb ... Unpacking gettext-base (0.19.8.1-9) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../08-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../09-m4_1.4.18-2_amd64.deb ... Unpacking m4 (1.4.18-2) ... Selecting previously unselected package autoconf. Preparing to unpack .../10-autoconf_2.69-11_all.deb ... Unpacking autoconf (2.69-11) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../11-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../12-automake_1%3a1.16.1-4_all.deb ... Unpacking automake (1:1.16.1-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../13-autopoint_0.19.8.1-9_all.deb ... Unpacking autopoint (0.19.8.1-9) ... Selecting previously unselected package libtool. Preparing to unpack .../14-libtool_2.4.6-10_all.deb ... Unpacking libtool (2.4.6-10) ... Selecting previously unselected package dh-autoreconf. Preparing to unpack .../15-dh-autoreconf_19_all.deb ... Unpacking dh-autoreconf (19) ... Selecting previously unselected package libarchive-zip-perl. Preparing to unpack .../16-libarchive-zip-perl_1.64-1_all.deb ... Unpacking libarchive-zip-perl (1.64-1) ... Selecting previously unselected package libsub-override-perl. Preparing to unpack .../17-libsub-override-perl_0.09-2_all.deb ... Unpacking libsub-override-perl (0.09-2) ... Selecting previously unselected package libfile-stripnondeterminism-perl. Preparing to unpack .../18-libfile-stripnondeterminism-perl_1.5.0-1_all.deb ... Unpacking libfile-stripnondeterminism-perl (1.5.0-1) ... Selecting previously unselected package dh-strip-nondeterminism. Preparing to unpack .../19-dh-strip-nondeterminism_1.5.0-1_all.deb ... Unpacking dh-strip-nondeterminism (1.5.0-1) ... Selecting previously unselected package libelf1:amd64. Preparing to unpack .../20-libelf1_0.176-1.1_amd64.deb ... Unpacking libelf1:amd64 (0.176-1.1) ... Selecting previously unselected package dwz. Preparing to unpack .../21-dwz_0.13-1_amd64.deb ... Unpacking dwz (0.13-1) ... Selecting previously unselected package libglib2.0-0:amd64. Preparing to unpack .../22-libglib2.0-0_2.60.6-2_amd64.deb ... Unpacking libglib2.0-0:amd64 (2.60.6-2) ... Selecting previously unselected package libcroco3:amd64. Preparing to unpack .../23-libcroco3_0.6.13-1_amd64.deb ... Unpacking libcroco3:amd64 (0.6.13-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../24-libncurses6_6.1+20190803-1_amd64.deb ... Unpacking libncurses6:amd64 (6.1+20190803-1) ... Selecting previously unselected package gettext. Preparing to unpack .../25-gettext_0.19.8.1-9_amd64.deb ... Unpacking gettext (0.19.8.1-9) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../26-intltool-debian_0.35.0+20060710.5_all.deb ... Unpacking intltool-debian (0.35.0+20060710.5) ... Selecting previously unselected package po-debconf. Preparing to unpack .../27-po-debconf_1.0.21_all.deb ... Unpacking po-debconf (1.0.21) ... Selecting previously unselected package debhelper. Preparing to unpack .../28-debhelper_12.5.3_all.deb ... Unpacking debhelper (12.5.3) ... Selecting previously unselected package libgcc1:arm64. Preparing to unpack .../29-libgcc1_1%3a9.2.1-3_arm64.deb ... Unpacking libgcc1:arm64 (1:9.2.1-3) ... Selecting previously unselected package libc6:arm64. Preparing to unpack .../30-libc6_2.28-10_arm64.deb ... 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Setting up autopoint (0.19.8.1-9) ... Setting up libcroco3:amd64 (0.6.13-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up gcc-9-base:arm64 (9.2.1-3) ... Setting up libfile-stripnondeterminism-perl (1.5.0-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.6.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc1:arm64 (1:9.2.1-3) ... Setting up dh-autoreconf (19) ... Setting up libc6:arm64 (2.28-10) ... Setting up dh-strip-nondeterminism (1.5.0-1) ... Setting up libc6-dev:arm64 (2.28-10) ... Setting up libstdc++6:arm64 (9.2.1-3) ... Setting up liblsan0:arm64 (9.2.1-3) ... Setting up libitm1:arm64 (9.2.1-3) ... Setting up libtsan0:arm64 (9.2.1-3) ... Setting up debhelper (12.5.3) ... Setting up zlib1g:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libgomp1:arm64 (9.2.1-3) ... Setting up libasan5:arm64 (9.2.1-3) ... Setting up libatomic1:arm64 (9.2.1-3) ... Setting up libubsan1:arm64 (9.2.1-3) ... Setting up zlib1g-dev:arm64 (1:1.2.11.dfsg-1+b1) ... Setting up libgcc-9-dev:arm64 (9.2.1-3) ... Setting up libstdc++-9-dev:arm64 (9.2.1-3) ... Setting up sbuild-build-depends-maq-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.28-10) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190821-2 dpkg-dev_1.19.7 g++-8_8.3.0-21 g++-9_9.2.1-3 gcc-8_8.3.0-21 gcc-9_9.2.1-3 libc6-dev_2.28-10 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-3 libstdc++-9-dev-arm64-cross_9.2.1-1cross1 libstdc++6_9.2.1-3 libstdc++6-arm64-cross_9.2.1-1cross1 linux-libc-dev_5.2.9-2 Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190821-2 binutils-aarch64-linux-gnu_2.32.51.20190821-2 binutils-common_2.32.51.20190821-2 binutils-x86-64-linux-gnu_2.32.51.20190821-2 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.6 bzip2_1.0.6-9.2 coreutils_8.30-3+b1 cpp_4:9.2.1-1 cpp-8_8.3.0-21 cpp-9_9.2.1-3 cpp-9-aarch64-linux-gnu_9.2.1-1cross1 cpp-aarch64-linux-gnu_4:9.2.1-1 cross-config_2.6.15-3 crossbuild-essential-arm64_12.6 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.3 debian-archive-keyring_2019.1 debianutils_4.8.6.3 dh-autoreconf_19 dh-strip-nondeterminism_1.5.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.23-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.6.0+git+20190510-2 g++_4:9.2.1-1 g++-8_8.3.0-21 g++-9_9.2.1-3 g++-9-aarch64-linux-gnu_9.2.1-1cross1 g++-aarch64-linux-gnu_4:9.2.1-1 gcc_4:9.2.1-1 gcc-8_8.3.0-21 gcc-8-base_8.3.0-21 gcc-9_9.2.1-3 gcc-9-aarch64-linux-gnu_9.2.1-1cross1 gcc-9-aarch64-linux-gnu-base_9.2.1-1cross1 gcc-9-base_9.2.1-3 gcc-9-cross-base_9.2.1-1cross1 gcc-aarch64-linux-gnu_4:9.2.1-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.3 libarchive-zip-perl_1.64-1 libasan5_9.2.1-3 libasan5-arm64-cross_9.2.1-1cross1 libatomic1_9.2.1-3 libatomic1-arm64-cross_9.2.1-1cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190821-2 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.6-9.2 libc-bin_2.28-10 libc-dev-bin_2.28-10 libc6_2.28-10 libc6-arm64-cross_2.28-10cross5 libc6-dev_2.28-10 libc6-dev-arm64-cross_2.28-10cross5 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-3 libcom-err2_1.45.3-4 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libext2fs2_1.45.3-4 libfakeroot_1.23-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.5.0-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-21 libgcc-9-dev_9.2.1-3 libgcc-9-dev-arm64-cross_9.2.1-1cross1 libgcc1_1:9.2.1-3 libgcc1-arm64-cross_1:9.2.1-1cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.60.6-2 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-4 libgomp1_9.2.1-3 libgomp1-arm64-cross_9.2.1-1cross1 libgpg-error0_1.36-7 libhogweed4_3.4.1-1+b1 libicu63_63.2-2 libidn2-0_2.2.0-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_9.2.1-3 libitm1-arm64-cross_9.2.1-1cross1 liblocale-gettext-perl_1.07-3+b4 liblsan0_9.2.1-3 liblsan0-arm64-cross_9.2.1-1cross1 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-21 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.4.1-1+b1 libp11-kit0_0.23.16.1-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_9.2.1-3 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsmartcols1_2.34-0.1 libss2_1.45.3-4 libstdc++-8-dev_8.3.0-21 libstdc++-9-dev_9.2.1-3 libstdc++-9-dev-arm64-cross_9.2.1-1cross1 libstdc++6_9.2.1-3 libstdc++6-arm64-cross_9.2.1-1cross1 libsub-override-perl_0.09-2 libsystemd0_242-4 libtasn1-6_4.14-2 libtinfo6_6.1+20190803-1 libtool_2.4.6-10 libtsan0_9.2.1-3 libtsan0-arm64-cross_9.2.1-1cross1 libubsan1_9.2.1-3 libubsan1-arm64-cross_9.2.1-1cross1 libuchardet0_0.0.6-3 libudev1_242-4 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 linux-libc-dev_5.2.9-2 linux-libc-dev-arm64-cross_5.2.7-1cross5 login_1:4.7-2 logsave_1.45.3-4 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.6.1-1 mawk_1.3.3-17+b3 mount_2.34-0.1 ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-maq-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.95-5 tar_1.30+dfsg-6+b1 tzdata_2019b-2 ucf_3.0038+nmu1 util-linux_2.34-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jul 16 13:51:15 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./maq_0.7.1-8.dsc dpkg-source: info: extracting maq in /<> dpkg-source: info: unpacking maq_0.7.1.orig.tar.gz dpkg-source: info: unpacking maq_0.7.1-8.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_prevent_-64_option.patch dpkg-source: info: applying gcc-4.7.patch dpkg-source: info: applying mayhem.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-3de8c002-33fd-492d-a384-42f42a3e068d SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package maq dpkg-buildpackage: info: source version 0.7.1-8 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 fakeroot debian/rules clean dh clean dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:6: installing './compile' dh_auto_configure -a ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --libexecdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a thread-safe mkdir -p... /bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to accept ISO C89... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking for aarch64-linux-gnu-g++... aarch64-linux-gnu-g++ checking whether we are using the GNU C++ compiler... yes checking whether aarch64-linux-gnu-g++ accepts -g... yes checking how to run the C preprocessor... aarch64-linux-gnu-gcc -E checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking zlib.h usability... yes checking zlib.h presence... yes checking for zlib.h... yes checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating config.h configure: WARNING: unrecognized options: --disable-maintainer-mode, --disable-dependency-tracking dh_auto_build -a make -j1 make[1]: Entering directory '/<>' make all-am make[2]: Entering directory '/<>' aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o main.o main.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o const.o const.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o seq.o seq.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o bfa.o bfa.c bfa.c: In function 'nst_load_bfa1': bfa.c:31:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 31 | fread(bfa1->name, sizeof(char), len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c:32:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 32 | fread(&bfa1->ori_len, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c:33:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 33 | fread(&bfa1->len, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c:35:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 35 | fread(bfa1->seq, sizeof(bit64_t), bfa1->len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c:37:2: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 37 | fread(bfa1->mask, sizeof(bit64_t), bfa1->len, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c: In function 'nst_bfa_len': bfa.c:46:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 46 | fread(&len, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ bfa.c:48:3: warning: ignoring return value of 'fread', declared with attribute warn_unused_result [-Wunused-result] 48 | fread(&len, sizeof(int), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o read.o read.cc aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fasta2bfa.o fasta2bfa.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o fastq2bfq.o fastq2bfq.c fastq2bfq.c: In function 'fastq2bfq': fastq2bfq.c:30:5: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 30 | fp = gzopen(str, "w"); | ^ fastq2bfq.c:36:7: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 36 | fp = gzopen(str, "w"); | ^ fastq2bfq.c:47:11: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types] 47 | gzwrite(fp, &i, sizeof(int)); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1446:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1446 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, | ^~ fastq2bfq.c:48:11: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types] 48 | gzwrite(fp, name, sizeof(char) * i); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1446:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1446 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, | ^~ fastq2bfq.c:49:11: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types] 49 | gzwrite(fp, &l, sizeof(int)); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1446:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1446 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, | ^~ fastq2bfq.c:50:11: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types] 50 | gzwrite(fp, seq.s, sizeof(char) * l); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1446:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1446 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, | ^~ fastq2bfq.c:53:12: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 53 | gzclose(fp); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1630:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1630 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ fastq2bfq.c:62:11: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 62 | gzclose(fp); | ^~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from fastq2bfq.c:1: /usr/include/zlib.h:1630:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1630 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o merge.o merge.cc aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o match_aux.o match_aux.cc aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o match.o match.cc match.cc: In function 'int alt_cal_mm(bit64_t)': match.cc:58:8: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses] 58 | x = x + (x >> 4) & 0x0F0F0F0F0F0F0F0FLLU; | ~~^~~~~~~~~~ match.cc:61:8: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses] 61 | x = x + (x >> 32) & 0x0000007F; | ~~^~~~~~~~~~~ match.cc: In function 'int alt_cal_err(bit64_t, bit64_t)': match.cc:67:8: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses] 67 | x = x + (x >> 4) & 0x0F0F0F0F0F0F0F0FLLU; | ~~^~~~~~~~~~ match.cc:70:8: warning: suggest parentheses around '+' in operand of '&' [-Wparentheses] 70 | x = x + (x >> 32) & 0x0000007F; | ~~^~~~~~~~~~~ match.cc: In function 'void process_candidate(const required_option_t*, int, bit64_t, match_data_t*, ref_canlist_t*)': match.cc:284:39: warning: 'void* memset(void*, int, size_t)' clearing an object of non-trivial type 'struct ref_canlist_t'; use assignment or value-initialization instead [-Wclass-memaccess] 284 | memset(list, 0, sizeof(ref_canlist_t)); | ^ match.cc:49:16: note: 'struct ref_canlist_t' declared here 49 | typedef struct { | ^ match.cc: In function 'void match_search(const match_aux_t*, match_data_t*, const nst_bfa1_t*, int, ref_canlist_t*)': match.cc:292:10: warning: variable 'n_reads' set but not used [-Wunused-but-set-variable] 292 | bit32_t n_reads; | ^~~~~~~ match.cc: In function 'int ma_match(int, char**)': match.cc:525:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] 525 | fscanf(tmpfp, "%s", adaptor); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o sort_mapping.o sort_mapping.cc sort_mapping.cc: In function 'int ma_make_pair(const match_aux_t*, const match_info_t*, const match_info_t*, pair_info_t*)': sort_mapping.cc:59:61: warning: suggest parentheses around arithmetic in operand of '^' [-Wparentheses] 59 | p->i1 = (((m1->i1>>24)+(m2->i1>>24))<<24) | (m1->i1^m2->i1&0xffffff); | ~~~~~~^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assemble.o assemble.cc assemble.cc: In function 'base_call_aux_t* assemble_cns_collect(assemble_pos_t*, const assemble_aux_t*)': assemble.cc:106:63: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] 106 | if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; | ~~~~^~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pileup.o pileup.cc aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o mapcheck.o mapcheck.cc mapcheck.cc: In function 'int ma_mapcheck(int, char**)': mapcheck.cc:60:17: warning: variable 'fpout' set but not used [-Wunused-but-set-variable] 60 | FILE *fp_bfa, *fpout; | ^~~~~ aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o get_pos.o get_pos.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o assopt.o assopt.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o aux_utils.o aux_utils.c aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rbcc.o rbcc.cc rbcc.cc: In function 'hash_map_char* cns_load_dbSNP(FILE*)': rbcc.cc:21:21: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 21 | sprintf(str1, "%s.%d", name, pos); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from rbcc.cc:7: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o subsnp.o subsnp.cc subsnp.cc: In function 'hash_map_char* ma_load_snp(FILE*)': subsnp.cc:20:20: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 20 | sprintf(key, "%s.%d", name, pos); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from subsnp.cc:2: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ subsnp.cc: In function 'hash_set_char* ma_load_snp_set(FILE*)': subsnp.cc:35:20: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 35 | sprintf(key, "%s.%d", name, pos); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from subsnp.cc:2: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ subsnp.cc: In function 'void maq_simucns_core(FILE*, gzFile, FILE*)': subsnp.cc:190:21: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 190 | sprintf(key, "%s.%d", name, pos); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from subsnp.cc:2: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ subsnp.cc:186:22: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 255 [-Wformat-overflow=] 186 | sprintf(key, "%s.%d", name, i); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from subsnp.cc:2: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 3 and 268 bytes into a destination of size 256 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o pair_stat.o pair_stat.cc aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_soa.o indel_soa.cc indel_soa.cc: In function 'void fill_counter(bit32_t*, int, nst_bfa1_t*, gzFile)': indel_soa.cc:42:40: warning: suggest parentheses around '-' inside '<<' [-Wparentheses] 42 | if (int(m1->seq[k]>>6) == int(s>>(31-j<<1)&3)) ++score; | ~~^~ indel_soa.cc:56:40: warning: suggest parentheses around '-' inside '<<' [-Wparentheses] 56 | if (int(m1->seq[k]>>6) == int(s>>(31-j<<1)&3)) ++score; | ~~^~ aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o maqmap.o maqmap.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o maqmap_conv.o maqmap_conv.c aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o altchr.o altchr.cc aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o submap.o submap.c aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o rmdup.o rmdup.cc In file included from /usr/aarch64-linux-gnu/include/string.h:494, from rmdup.cc:2: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'char* trim_name(char*, char*)' at rmdup.cc:46:11, inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21, inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:102:23: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)': rmdup.cc:42:26: note: length computed here 42 | int c1, c2, tl = strlen(name); | ~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/string.h:494, from rmdup.cc:2: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'char* trim_name(char*, char*)' at rmdup.cc:46:11, inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21, inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:94:37: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)': rmdup.cc:42:26: note: length computed here 42 | int c1, c2, tl = strlen(name); | ~~~~~~^~~~~~ In file included from /usr/aarch64-linux-gnu/include/string.h:494, from rmdup.cc:2: In function 'char* strncpy(char*, const char*, size_t)', inlined from 'char* trim_name(char*, char*)' at rmdup.cc:46:11, inlined from 'char* trim_name(char*, char*)' at rmdup.cc:39:21, inlined from 'void maq_rmdup_core(gzFile, gzFile)' at rmdup.cc:92:31: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:106:34: warning: 'char* __builtin___strncpy_chk(char*, const char*, long unsigned int, long unsigned int)' specified bound depends on the length of the source argument [-Wstringop-overflow=] 106 | return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest)); | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ rmdup.cc: In function 'void maq_rmdup_core(gzFile, gzFile)': rmdup.cc:42:26: note: length computed here 42 | int c1, c2, tl = strlen(name); | ~~~~~~^~~~~~ aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o simulate.o simulate.c simulate.c: In function 'maq_simutrain': simulate.c:83:8: warning: assignment to 'struct gzFile_s **' from incompatible pointer type 'gzFile' {aka 'struct gzFile_s *'} [-Wincompatible-pointer-types] 83 | fpout = gzopen(argv[1], "w"); | ^ simulate.c:86:10: warning: passing argument 1 of 'gzwrite' from incompatible pointer type [-Wincompatible-pointer-types] 86 | gzwrite(fpout, fqc, sizeof(fqc_t)); | ^~~~~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from simulate.c:6: /usr/include/zlib.h:1446:29: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1446 | ZEXTERN int ZEXPORT gzwrite OF((gzFile file, | ^~ simulate.c:87:10: warning: passing argument 1 of 'gzclose' from incompatible pointer type [-Wincompatible-pointer-types] 87 | gzclose(fpout); | ^~~~~ | | | struct gzFile_s ** In file included from /usr/include/zlib.h:34, from simulate.c:6: /usr/include/zlib.h:1630:32: note: expected 'gzFile' {aka 'struct gzFile_s *'} but argument is of type 'struct gzFile_s **' 1630 | ZEXTERN int ZEXPORT gzclose OF((gzFile file)); | ^~ In file included from /usr/aarch64-linux-gnu/include/string.h:494, from maqmap.h:23, from simulate.c:11: In function 'memset', inlined from 'simustat_core' at simulate.c:386:2: /usr/aarch64-linux-gnu/include/bits/string_fortified.h:71:10: warning: '__builtin___memset_chk' forming offset [17, 32] is out of the bounds [0, 16] of object 'tc' with type 'int[2][2]' [-Warray-bounds] 71 | return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest)); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ simulate.c: In function 'simustat_core': simulate.c:381:12: note: 'tc' declared here 381 | int i, k, tc[2][2]; | ^~ aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o genran.o genran.c aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_pe.o indel_pe.cc aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o stdaln.o stdaln.c stdaln.c: In function 'aln_local_core': stdaln.c:534:25: warning: variable 'b' set but not used [-Wunused-but-set-variable] 534 | int gap_open, gap_ext, b; | ^ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o indel_call.o indel_call.cc indel_call.cc: In function 'int maq_indelpe(int, char**)': indel_call.cc:68:17: warning: 'last.indel_info_t::indelpos.assemble_indelpos_t::n_ungap' may be used uninitialized in this function [-Wmaybe-uninitialized] 68 | for (i = 0; i != ii->indelpos.n_ungap; ++i) | ~~^~~~~~~~~~~~~~~~~~~~~~~ indel_call.cc:86:21: note: 'last.indel_info_t::indelpos.assemble_indelpos_t::n_ungap' was declared here 86 | indel_info_t curr, last; | ^~~~ indel_call.cc:22:2: warning: 'last.indel_info_t::indelpos.assemble_indelpos_t::n_types' may be used uninitialized in this function [-Wmaybe-uninitialized] 22 | if (ii->indelpos.n_types == 0) return; | ^~ indel_call.cc:86:21: note: 'last.indel_info_t::indelpos.assemble_indelpos_t::n_types' was declared here 86 | indel_info_t curr, last; | ^~~~ indel_call.cc:60:9: warning: 'last.indel_info_t::coor' may be used uninitialized in this function [-Wmaybe-uninitialized] 60 | printf("%s\t%d\t%c\t%d\t%d:%s\t%d\t%d\t%s\t%s\t%d\t@", name, ii->coor+1, ii->type, ii->indelpos.n_reads, | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 61 | int((signed char)(x&0xff)), indel_bases, int(x>>16&0xffff), int(x>>32&0xffff), s0, s1, ii->indelpos.n_ungap); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ indel_call.cc:86:21: note: 'last.indel_info_t::coor' was declared here 86 | indel_info_t curr, last; | ^~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o eland2maq.o eland2maq.cc eland2maq.cc: In function 'void eland2maq_core(FILE*, FILE*, gzFile)': eland2maq.cc:88:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] 88 | fscanf(fp_eland, "%s", str); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ eland2maq.cc:96:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] 96 | fscanf(fp_eland, "%s", str); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~ eland2maq.cc:99:10: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] 99 | fscanf(fp_eland, "%u%u%u%s%u%s", tmp, tmp+1, tmp+2, str, tmp+3, str2); | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ eland2maq.cc: In function 'hash_map_char* read_list(FILE*)': eland2maq.cc:33:9: warning: ignoring return value of 'int fscanf(FILE*, const char*, ...)', declared with attribute warn_unused_result [-Wunused-result] 33 | fscanf(fp, "%s", str); | ~~~~~~^~~~~~~~~~~~~~~ eland2maq.cc: In function 'void novo2maq_core(FILE*, FILE*, gzFile)': eland2maq.cc:323:18: warning: ignoring return value of 'char* fgets(char*, int, FILE*)', declared with attribute warn_unused_result [-Wunused-result] 323 | fgets( str2, 4096, fp_novo ); | ~~~~~^~~~~~~~~~~~~~~~~~~~~~~ eland2maq.cc: In function 'void export2maq_core(FILE*, FILE*, gzFile)': eland2maq.cc:563:21: warning: '%d' directive writing between 1 and 11 bytes into a region of size between 0 and 1023 [-Wformat-overflow=] 563 | sprintf(str2, "%s_%d:%d:%d:%d:%d", str, ti[0], ti[1], ti[2], ti[3], ti[4]); | ^~ In file included from /usr/aarch64-linux-gnu/include/stdio.h:873, from eland2maq.cc:9: /usr/aarch64-linux-gnu/include/bits/stdio2.h:36:34: note: '__builtin___sprintf_chk' output between 11 and 1084 bytes into a destination of size 1024 36 | return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1, | ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 37 | __bos (__s), __fmt, __va_arg_pack ()); | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o csmap2ntmap.o csmap2ntmap.cc aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o break_pair.o break_pair.c In file included from break_pair.c:2: break_pair.c: In function 'breakpair': break_pair.c:16:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses] 16 | assert(fp = gzopen(str, "r")); | ^~ aarch64-linux-gnu-g++ -DHAVE_CONFIG_H -I. -Wdate-time -D_FORTIFY_SOURCE=2 -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -c -o glfgen.o glfgen.cc glfgen.cc: In function 'glf1_t* glfgen1_core(assemble_pos_t*, const assemble_aux_t*, bit8_t)': glfgen.cc:43:63: warning: suggest parentheses around arithmetic in operand of '|' [-Wparentheses] 43 | if (info>>24 < 4 && (info>>8&0x3f) != 0) info = 4<<24 | info&0xffffff; | ~~~~^~~~~~~~~ aarch64-linux-gnu-g++ -Wall -D_FILE_OFFSET_BITS=64 -D_FASTMAP -DMAQ_LONGREADS -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now -o maq main.o const.o seq.o bfa.o read.o fasta2bfa.o fastq2bfq.o merge.o match_aux.o match.o sort_mapping.o assemble.o pileup.o mapcheck.o get_pos.o assopt.o aux_utils.o rbcc.o subsnp.o pair_stat.o indel_soa.o maqmap.o maqmap_conv.o altchr.o submap.o rmdup.o simulate.o genran.o indel_pe.o stdaln.o indel_call.o eland2maq.o csmap2ntmap.o break_pair.o glfgen.o -lm -lz make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_auto_test -a create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a dh_prep -a dh_auto_install -a make -j1 install DESTDIR=/<>/debian/maq AM_UPDATE_INFO_DIR=no make[1]: Entering directory '/<>' make[2]: Entering directory '/<>' /bin/mkdir -p '/<>/debian/maq/usr/bin' /usr/bin/install -c maq '/<>/debian/maq/usr/bin' /bin/mkdir -p '/<>/debian/maq/usr/bin' /usr/bin/install -c scripts/maq.pl scripts/farm-run.pl scripts/maq_plot.pl scripts/maq_eval.pl '/<>/debian/maq/usr/bin' make[2]: Nothing to be done for 'install-data-am'. make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a debian/rules override_dh_installman make[1]: Entering directory '/<>' dh_installman # when installing via debian/manpages the .pl is stripped and the # files will end up in /usr/share/man/pl/man1 cp -a debian/mans/*.1 debian/maq/usr/share/man/man1 make[1]: Leaving directory '/<>' dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress --exclude=.pdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package maq: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package maq: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'maq' in '../maq_0.7.1-8_arm64.deb'. dpkg-deb: building package 'maq-dbgsym' in '../maq-dbgsym_0.7.1-8_arm64.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../maq_0.7.1-8_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-08-22T17:04:09Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Post Build Chroot | +------------------------------------------------------------------------------+ lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/resolver-KxGvll/apt_archive/sbuild-build-depends-lintian-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-lintian-dummy sbuild-build-depends-maq-dummy dpkg-scanpackages: info: Wrote 4 entries to output Packages file. Ign:1 copy:/<>/resolver-KxGvll/apt_archive ./ InRelease Get:2 copy:/<>/resolver-KxGvll/apt_archive ./ Release [963 B] Ign:3 copy:/<>/resolver-KxGvll/apt_archive ./ Release.gpg Get:4 copy:/<>/resolver-KxGvll/apt_archive ./ Sources [759 B] Get:5 copy:/<>/resolver-KxGvll/apt_archive ./ Packages [832 B] Fetched 2554 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common t1utils Suggested packages: libdata-dump-perl ca-certificates libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc Recommended packages: gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl libsereal-perl libtest-fatal-perl libtest-refcount-perl libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl libtype-tiny-xs-perl libperlio-gzip-perl The following NEW packages will be installed: diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl libdevel-globaldestruction-perl libdigest-hmac-perl libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfuture-perl libhtml-parser-perl libhtml-tagset-perl libimport-into-perl libio-async-loop-epoll-perl libio-async-perl libio-pty-perl libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1 libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils perl-openssl-defaults readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils 0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded. 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http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.1-1 [47.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.79+repack-2 [34.0 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.19.0 [1256 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 8518 kB in 0s (27.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 19147 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.0-3_all.deb ... Unpacking readline-common (8.0-3) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.0-3_amd64.deb ... Unpacking libreadline8:amd64 (8.0-3) ... Selecting previously unselected package netbase. Preparing to unpack .../02-netbase_5.6_all.deb ... Unpacking netbase (5.6) ... Selecting previously unselected package diffstat. Preparing to unpack .../03-diffstat_1.62-1+b1_amd64.deb ... Unpacking diffstat (1.62-1+b1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../04-libassuan0_2.5.3-7_amd64.deb ... Unpacking libassuan0:amd64 (2.5.3-7) ... Selecting previously unselected package gpgconf. Preparing to unpack .../05-gpgconf_2.2.17-3_amd64.deb ... Unpacking gpgconf (2.2.17-3) ... Selecting previously unselected package libsqlite3-0:amd64. 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ maq_0.7.1-8_arm64.changes: -------------------------- Format: 1.8 Date: Mon, 16 Jul 2018 15:42:20 +0200 Source: maq Binary: maq maq-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 0.7.1-8 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: maq - maps short fixed-length polymorphic DNA sequence reads to referen Changes: maq (0.7.1-8) unstable; urgency=medium . [ Steffen Moeller ] * debian/upstream/metadata: - Added references to OMICtools, SciCrunch, bio.tools - yamllint cleanliness . [ Andreas Tille ] * debhelper 11 * Point Vcs fields to salsa.debian.org * Standards-Version: 4.1.5 * Lintian should not warn about script-with-language-extension see https://lists.debian.org/debian-med/2018/06/msg00043.html Checksums-Sha1: 6e7639385167d828ce124f51bba4a8239ec2cefe 424384 maq-dbgsym_0.7.1-8_arm64.deb 2239f3c4157b36a6d9d749871ad58ddde17b7ed6 4604 maq_0.7.1-8_arm64.buildinfo 4fb9d78c4ec1033375e826b267b7d695902052d9 301184 maq_0.7.1-8_arm64.deb Checksums-Sha256: 9217082a7fdcb0304bc11c59d7bb6491c1e7f20c0aebed28f57ce0fc2a8a9140 424384 maq-dbgsym_0.7.1-8_arm64.deb 450d6deedeae05f93c2b4ca310ba66b8ce4259078f5e90e358e24bcaddab3b72 4604 maq_0.7.1-8_arm64.buildinfo 9b4428ef9ae5c447dfe7feec39db6ecc3adb93246658705afc1d2ed9fdeeed03 301184 maq_0.7.1-8_arm64.deb Files: 2207b307e12aee63cacc308afcd5de22 424384 debug optional maq-dbgsym_0.7.1-8_arm64.deb 6ba03085914792099f03305bdce45907 4604 science optional maq_0.7.1-8_arm64.buildinfo f6511098c70c98499dd96c1b0bfca630 301184 science optional maq_0.7.1-8_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: maq Binary: maq Architecture: arm64 Version: 0.7.1-8 Checksums-Md5: 2207b307e12aee63cacc308afcd5de22 424384 maq-dbgsym_0.7.1-8_arm64.deb f6511098c70c98499dd96c1b0bfca630 301184 maq_0.7.1-8_arm64.deb Checksums-Sha1: 6e7639385167d828ce124f51bba4a8239ec2cefe 424384 maq-dbgsym_0.7.1-8_arm64.deb 4fb9d78c4ec1033375e826b267b7d695902052d9 301184 maq_0.7.1-8_arm64.deb Checksums-Sha256: 9217082a7fdcb0304bc11c59d7bb6491c1e7f20c0aebed28f57ce0fc2a8a9140 424384 maq-dbgsym_0.7.1-8_arm64.deb 9b4428ef9ae5c447dfe7feec39db6ecc3adb93246658705afc1d2ed9fdeeed03 301184 maq_0.7.1-8_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 22 Aug 2019 17:04:09 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190821-2), binutils-common (= 2.32.51.20190821-2), binutils-x86-64-linux-gnu (= 2.32.51.20190821-2), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.6), bzip2 (= 1.0.6-9.2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-1), cpp-8 (= 8.3.0-21), cpp-9 (= 9.2.1-3), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.5.3), debianutils (= 4.8.6.3), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.5.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.6.0+git+20190510-2), g++ (= 4:9.2.1-1), g++-9 (= 9.2.1-3), gcc (= 4:9.2.1-1), gcc-8 (= 8.3.0-21), gcc-8-base (= 8.3.0-21), gcc-9 (= 9.2.1-3), gcc-9-base (= 9.2.1-3), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3), hostname (= 3.21), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-4), libarchive-zip-perl (= 1.64-1), libasan5 (= 9.2.1-3), libatomic1 (= 9.2.1-3), libattr1 (= 1:2.4.48-4), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190821-2), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.6-9.2), libc-bin (= 2.28-10), libc-dev-bin (= 2.28-10), libc6 (= 2.28-10), libc6-dev (= 2.28-10), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-3), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.5.0-1), libgcc-8-dev (= 8.3.0-21), libgcc-9-dev (= 9.2.1-3), libgcc1 (= 1:9.2.1-3), libgcrypt20 (= 1.8.4-5), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.60.6-2), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-3), libgpg-error0 (= 1.36-7), libicu63 (= 63.2-2), libisl19 (= 0.20-2), libitm1 (= 9.2.1-3), liblsan0 (= 9.2.1-3), liblz4-1 (= 1.8.3-1), liblzma5 (= 5.2.4-1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-21), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.28 (= 5.28.1-6), libpipeline1 (= 1.5.1-2), libquadmath0 (= 9.2.1-3), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-3), libstdc++6 (= 9.2.1-3), libsub-override-perl (= 0.09-2), libsystemd0 (= 242-4), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-10), libtsan0 (= 9.2.1-3), libubsan1 (= 9.2.1-3), libuchardet0 (= 0.0.6-3), libudev1 (= 242-4), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libxml2 (= 2.9.4+dfsg1-7+b3), linux-libc-dev (= 5.2.9-2), login (= 1:4.7-2), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.6.1-1), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.28.1-6), perl-base (= 5.28.1-6), perl-modules-5.28 (= 5.28.1-6), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.95-5), tar (= 1.30+dfsg-6+b1), util-linux (= 2.34-0.1), xz-utils (= 5.2.4-1), zlib1g (= 1:1.2.11.dfsg-1+b1), zlib1g-dev (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="POSIX" SOURCE_DATE_EPOCH="1531748540" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ maq-dbgsym_0.7.1-8_arm64.deb ---------------------------- new Debian package, version 2.0. size 424384 bytes: control archive=528 bytes. 354 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: maq-dbgsym Source: maq Version: 0.7.1-8 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 444 Depends: maq (= 0.7.1-8) Section: debug Priority: optional Description: debug symbols for maq Build-Ids: 6e6c34afe2d79970191bdd13703038011906a611 drwxr-xr-x root/root 0 2018-07-16 13:42 ./ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/lib/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/lib/debug/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/lib/debug/.build-id/6e/ -rw-r--r-- root/root 444064 2018-07-16 13:42 ./usr/lib/debug/.build-id/6e/6c34afe2d79970191bdd13703038011906a611.debug drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-07-16 13:42 ./usr/share/doc/maq-dbgsym -> maq maq_0.7.1-8_arm64.deb --------------------- new Debian package, version 2.0. size 301184 bytes: control archive=1544 bytes. 828 bytes, 18 lines control 1600 bytes, 26 lines md5sums Package: maq Version: 0.7.1-8 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 521 Depends: libc6 (>= 2.27), libgcc1 (>= 1:4.2), libstdc++6 (>= 5), zlib1g (>= 1:1.2.3.3) Suggests: bwa, samtools Section: science Priority: optional Homepage: http://maq.sourceforge.net/ Description: maps short fixed-length polymorphic DNA sequence reads to reference sequences Maq (short for Mapping and Assembly with Quality) builds mapping assemblies from short reads generated by the next-generation sequencing machines. It was particularly designed for Illumina-Solexa 1G Genetic Analyzer, and has a preliminary functionality to handle ABI SOLiD data. Maq is previously known as mapass2. . Developmemt of Maq stopped in 2008. Its successors are BWA and SAMtools. drwxr-xr-x root/root 0 2018-07-16 13:42 ./ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/bin/ -rwxr-xr-x root/root 4007 2018-07-16 13:42 ./usr/bin/farm-run.pl -rwxr-xr-x root/root 218640 2018-07-16 13:42 ./usr/bin/maq -rwxr-xr-x root/root 28813 2018-07-16 13:42 ./usr/bin/maq.pl -rwxr-xr-x root/root 10995 2018-07-16 13:42 ./usr/bin/maq_eval.pl -rwxr-xr-x root/root 4892 2018-07-16 13:42 ./usr/bin/maq_plot.pl drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/doc-base/ -rw-r--r-- root/root 295 2018-07-16 13:42 ./usr/share/doc-base/maq drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/doc/maq/ -rw-r--r-- root/root 47 2008-03-15 12:06 ./usr/share/doc/maq/AUTHORS -rw-r--r-- root/root 939 2008-03-15 12:06 ./usr/share/doc/maq/README -rw-r--r-- root/root 2000 2018-07-16 13:42 ./usr/share/doc/maq/changelog.Debian.gz -rw-r--r-- root/root 22703 2008-09-22 08:54 ./usr/share/doc/maq/changelog.gz -rw-r--r-- root/root 2147 2018-07-16 13:42 ./usr/share/doc/maq/copyright drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/doc/maq/examples/ -rw-r--r-- root/root 761 2018-07-16 13:42 ./usr/share/doc/maq/examples/test.fa -rw-r--r-- root/root 4319 2018-07-16 13:42 ./usr/share/doc/maq/examples/test.fastq.gz -rw-r--r-- root/root 148751 2008-09-26 14:47 ./usr/share/doc/maq/maq.pdf drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/lintian/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 244 2018-07-16 13:42 ./usr/share/lintian/overrides/maq drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/man/ drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/man/man1/ -rw-r--r-- root/root 439 2018-07-16 13:42 ./usr/share/man/man1/farm-run.pl.1.gz -rw-r--r-- root/root 12557 2018-07-16 13:42 ./usr/share/man/man1/maq.1.gz -rw-r--r-- root/root 573 2018-07-16 13:42 ./usr/share/man/man1/maq.pl.1.gz -rw-r--r-- root/root 361 2018-07-16 13:42 ./usr/share/man/man1/maq_eval.pl.1.gz -rw-r--r-- root/root 304 2018-07-16 13:42 ./usr/share/man/man1/maq_plot.pl.1.gz drwxr-xr-x root/root 0 2018-07-16 13:42 ./usr/share/maq/ -rwxr-xr-x root/root 3590 2008-09-22 08:54 ./usr/share/maq/asub -rwxr-xr-x root/root 9729 2008-09-22 08:54 ./usr/share/maq/fq_all2std.pl -rwxr-xr-x root/root 4568 2008-06-23 14:15 ./usr/share/maq/maq_post.pl -rwxr-xr-x root/root 6326 2008-07-27 18:14 ./usr/share/maq/maq_sanger.pl -rwxr-xr-x root/root 13683 2008-07-27 18:14 ./usr/share/maq/paf_utils.pl -rwxr-xr-x root/root 3066 2008-03-28 23:36 ./usr/share/maq/solid2fastq.pl +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 8568 Build-Time: 33 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 26 Job: maq_0.7.1-8 Lintian: pass Machine Architecture: amd64 Package: maq Package-Time: 72 Source-Version: 0.7.1-8 Space: 8568 Status: successful Version: 0.7.1-8 -------------------------------------------------------------------------------- Finished at 2019-08-22T17:04:09Z Build needed 00:01:12, 8568k disk space