sbuild (Debian sbuild) 0.81.2 (31 January 2021) on debian-ci-siliconvalley +==============================================================================+ | microbiomeutil 20101212+dfsg1-5 (armhf) Sun, 04 Sep 2022 01:55:31 +0000 | +==============================================================================+ Package: microbiomeutil Version: 20101212+dfsg1-5 Source Version: 20101212+dfsg1-5 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-13d69fec-43dc-419e-bdb3-77a9eff1435d' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-CghbIU/resolver-ae3vgD' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Hit:1 http://localhost:3142/debian sid InRelease Get:2 http://localhost:3142/debian sid/main armhf Packages [8963 kB] Fetched 8963 kB in 1s (6359 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'microbiomeutil' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/microbiomeutil.git Please use: git clone https://salsa.debian.org/med-team/microbiomeutil.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1623 kB of source archives. Get:1 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-5 (dsc) [2409 B] Get:2 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-5 (tar) [1610 kB] Get:3 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-5 (diff) [10.4 kB] Fetched 1623 kB in 6s (253 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/microbiomeutil-CghbIU/microbiomeutil-20101212+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-CghbIU' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [426 B] Get:5 copy:/<>/apt_archive ./ Packages [516 B] Fetched 1899 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cdbfasta cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libelf1 libexpat1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgclib3 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu71 libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libncursesw6 libnsl-dev:armhf libnsl2:armhf libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8 libsqlite3-0 libssl3:armhf libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data po-debconf python3 python3-minimal python3.10 python3.10-minimal readline-common sensible-utils systemd ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf krb5-doc:armhf krb5-user:armhf libstdc++-11-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.10-venv python3.10-doc binfmt-support readline-doc systemd-container systemd-homed systemd-userdbd systemd-boot systemd-resolved libfido2-1 libtss2-esys-3.0.2-0 libtss2-mu0 libtss2-rc0 policykit-1 Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl krb5-locales:armhf libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl default-dbus-system-bus | dbus-system-bus systemd-timesyncd | time-daemon The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cdbfasta cpp-12-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dmsetup dpkg-cross dwz file g++-12-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-11-base:armhf gcc-12-arm-linux-gnueabihf gcc-12-arm-linux-gnueabihf-base gcc-12-base:armhf gcc-12-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libapparmor1 libarchive-zip-perl libargon2-1 libasan6:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libcom-err2:armhf libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libcryptsetup12 libdebhelper-perl libdebian-dpkgcross-perl libdevmapper1.02.1 libelf1 libexpat1 libfdisk1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:armhf libgcc-12-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgclib3 libgomp1:armhf libgomp1-armhf-cross libgssapi-krb5-2:armhf libicu71 libio-string-perl libip4tc2 libjson-c5 libk5crypto3:armhf libkeyutils1:armhf libkmod2 libkrb5-3:armhf libkrb5support0:armhf liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto7 libmbedtls14 libmbedx509-1 libmpdec3 libncursesw6 libnsl-dev:armhf libnsl2:armhf libpipeline1 libpython3-stdlib libpython3.10-minimal libpython3.10-stdlib libreadline8 libsqlite3-0 libssl3:armhf libstdc++-11-dev:armhf libstdc++-12-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libsystemd-shared libtirpc-dev:armhf libtirpc3:armhf libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:armhf linux-libc-dev-armhf-cross m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data po-debconf python3 python3-minimal python3.10 python3.10-minimal readline-common sbuild-build-depends-main-dummy:armhf sensible-utils systemd ucf 0 upgraded, 128 newly installed, 0 to remove and 0 not upgraded. Need to get 113 MB of archives. After this operation, 449 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian sid/main amd64 libargon2-1 amd64 0~20171227-0.3 [20.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 dmsetup amd64 2:1.02.185-1 [92.7 kB] Get:4 http://localhost:3142/debian sid/main amd64 libdevmapper1.02.1 amd64 2:1.02.185-1 [143 kB] Get:5 http://localhost:3142/debian sid/main amd64 libjson-c5 amd64 0.16-1 [44.0 kB] Get:6 http://localhost:3142/debian sid/main amd64 libcryptsetup12 amd64 2:2.5.0-2 [256 kB] Get:7 http://localhost:3142/debian sid/main amd64 libfdisk1 amd64 2.38.1-1 [250 kB] Get:8 http://localhost:3142/debian sid/main amd64 libkmod2 amd64 30+20220630-3 [59.6 kB] Get:9 http://localhost:3142/debian sid/main amd64 libapparmor1 amd64 3.0.7-1 [103 kB] Get:10 http://localhost:3142/debian sid/main amd64 libip4tc2 amd64 1.8.8-1 [34.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libsystemd-shared amd64 251.4-3 [1698 kB] Get:12 http://localhost:3142/debian sid/main amd64 systemd amd64 251.4-3 [2901 kB] Get:13 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-4+b2 [19.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 libpython3.10-minimal amd64 3.10.6-1 [828 kB] Get:15 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.4.8-1 [109 kB] Get:16 http://localhost:3142/debian sid/main amd64 python3.10-minimal amd64 3.10.6-1 [1993 kB] Get:17 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.10.6-1 [38.7 kB] Get:18 http://localhost:3142/debian sid/main amd64 media-types all 8.0.0 [33.4 kB] Get:19 http://localhost:3142/debian sid/main amd64 libmpdec3 amd64 2.5.1-2 [87.8 kB] Get:20 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.3+20220423-2 [133 kB] Get:21 http://localhost:3142/debian sid/main amd64 readline-common all 8.2~rc2-2 [75.8 kB] Get:22 http://localhost:3142/debian sid/main amd64 libreadline8 amd64 8.2~rc2-2 [173 kB] Get:23 http://localhost:3142/debian sid/main amd64 libsqlite3-0 amd64 3.39.2-1 [838 kB] Get:24 http://localhost:3142/debian sid/main amd64 libpython3.10-stdlib amd64 3.10.6-1 [1685 kB] Get:25 http://localhost:3142/debian sid/main amd64 python3.10 amd64 3.10.6-1 [545 kB] Get:26 http://localhost:3142/debian sid/main amd64 libpython3-stdlib amd64 3.10.6-1 [21.7 kB] Get:27 http://localhost:3142/debian sid/main amd64 python3 amd64 3.10.6-1 [38.2 kB] Get:28 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17 [21.5 kB] Get:29 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.41-4 [295 kB] Get:30 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.41-4 [129 kB] Get:31 http://localhost:3142/debian sid/main amd64 file amd64 1:5.41-4 [67.0 kB] Get:32 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-9 [175 kB] Get:33 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:34 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-8 [936 kB] Get:35 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-1 [145 kB] Get:36 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.6-2 [39.4 kB] Get:37 http://localhost:3142/debian sid/main amd64 man-db amd64 2.10.2-2 [1413 kB] Get:38 http://localhost:3142/debian sid/main amd64 ucf all 3.0043 [74.0 kB] Get:39 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-1 [291 kB] Get:40 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-2 [343 kB] Get:41 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:43 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-9 [510 kB] Get:44 http://localhost:3142/debian sid/main amd64 binutils-arm-linux-gnueabihf amd64 2.38.90.20220713-2 [3174 kB] Get:45 http://localhost:3142/debian sid/main amd64 libgclib3 amd64 0.12.7+ds-4 [150 kB] Get:46 http://localhost:3142/debian sid/main amd64 cdbfasta amd64 1.00+git20181005.014498c+dfsg-4 [129 kB] Get:47 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf-base amd64 12.2.0-1cross1 [208 kB] Get:48 http://localhost:3142/debian sid/main amd64 cpp-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [8667 kB] Get:49 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:12.2.0-1 [17.2 kB] Get:50 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:51 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-1cross1 [203 kB] Get:52 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.34-3cross1 [1073 kB] Get:53 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 12.2.0-1cross1 [36.6 kB] Get:54 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 12.2.0-1cross1 [94.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 12.2.0-1cross1 [6768 B] Get:56 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 12.2.0-1cross1 [2113 kB] Get:57 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 12.2.0-1cross1 [477 kB] Get:58 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 12.2.0-1cross1 [855 kB] Get:59 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-armhf-cross all 12.2.0-1cross1 [742 kB] Get:60 http://localhost:3142/debian sid/main amd64 gcc-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [17.0 MB] Get:61 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:12.2.0-1 [1464 B] Get:62 http://localhost:3142/debian sid/main amd64 linux-libc-dev-armhf-cross all 5.18.16-1cross1 [1703 kB] Get:63 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.34-3cross1 [1411 kB] Get:64 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-armhf-cross all 12.2.0-1cross1 [2036 kB] Get:65 http://localhost:3142/debian sid/main amd64 g++-12-arm-linux-gnueabihf amd64 12.2.0-1cross1 [9597 kB] Get:66 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:12.2.0-1 [1180 B] Get:67 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:69 http://localhost:3142/debian sid/main amd64 libicu71 amd64 71.1-3 [9218 kB] Get:70 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1+b1 [708 kB] Get:71 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:72 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-2 [21.0 kB] Get:73 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:74 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1 [337 kB] Get:75 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:76 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:77 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:78 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-1 [17.3 kB] Get:79 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:80 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:81 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:82 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.9 [6708 B] Get:83 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.9.1 [196 kB] Get:84 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-4 [526 kB] Get:85 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:86 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:87 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-3 [10.4 kB] Get:88 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:89 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.187-2 [179 kB] Get:91 http://localhost:3142/debian sid/main amd64 dwz amd64 0.14-1 [98.3 kB] Get:92 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-9 [1315 kB] Get:93 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:95 http://localhost:3142/debian sid/main amd64 debhelper all 13.9.1 [1071 kB] Get:96 http://localhost:3142/debian sid/main armhf gcc-11-base armhf 11.3.0-5 [209 kB] Get:97 http://localhost:3142/debian sid/main armhf gcc-12-base armhf 12.2.0-1 [208 kB] Get:98 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 12.2.0-1 [36.6 kB] Get:99 http://localhost:3142/debian sid/main armhf libc6 armhf 2.34-7 [2388 kB] Get:100 http://localhost:3142/debian sid/main armhf libasan6 armhf 11.3.0-5 [1971 kB] Get:101 http://localhost:3142/debian sid/main armhf libatomic1 armhf 12.2.0-1 [6992 B] Get:102 http://localhost:3142/debian sid/main armhf linux-libc-dev armhf 5.19.6-1 [1591 kB] Get:103 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.28-2 [96.2 kB] Get:104 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.28-2 [125 kB] Get:105 http://localhost:3142/debian sid/main armhf libcom-err2 armhf 1.46.5-2 [74.8 kB] Get:106 http://localhost:3142/debian sid/main armhf libkrb5support0 armhf 1.20-1 [62.8 kB] Get:107 http://localhost:3142/debian sid/main armhf libk5crypto3 armhf 1.20-1 [108 kB] Get:108 http://localhost:3142/debian sid/main armhf libkeyutils1 armhf 1.6.3-1 [14.7 kB] Get:109 http://localhost:3142/debian sid/main armhf libssl3 armhf 3.0.5-2 [1678 kB] Get:110 http://localhost:3142/debian sid/main armhf libkrb5-3 armhf 1.20-1 [320 kB] Get:111 http://localhost:3142/debian sid/main armhf libgssapi-krb5-2 armhf 1.20-1 [144 kB] Get:112 http://localhost:3142/debian sid/main armhf libtirpc3 armhf 1.3.3+ds-1 [72.9 kB] Get:113 http://localhost:3142/debian sid/main armhf libnsl2 armhf 1.3.0-2 [33.9 kB] Get:114 http://localhost:3142/debian sid/main armhf libtirpc-dev armhf 1.3.3+ds-1 [182 kB] Get:115 http://localhost:3142/debian sid/main armhf libnsl-dev armhf 1.3.0-2 [62.1 kB] Get:116 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.34-7 [1446 kB] Get:117 http://localhost:3142/debian sid/main armhf libgomp1 armhf 12.2.0-1 [97.0 kB] Get:118 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 12.2.0-1 [519 kB] Get:119 http://localhost:3142/debian sid/main armhf libubsan1 armhf 12.2.0-1 [856 kB] Get:120 http://localhost:3142/debian sid/main armhf libgcc-11-dev armhf 11.3.0-5 [709 kB] Get:121 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.24-1 [45.0 kB] Get:122 http://localhost:3142/debian sid/main amd64 libmbedcrypto7 amd64 2.28.1-1 [274 kB] Get:123 http://localhost:3142/debian sid/main amd64 libmbedx509-1 amd64 2.28.1-1 [129 kB] Get:124 http://localhost:3142/debian sid/main amd64 libmbedtls14 amd64 2.28.1-1 [164 kB] Get:125 http://localhost:3142/debian sid/main armhf libstdc++-11-dev armhf 11.3.0-5 [1981 kB] Get:126 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg1-10 [3557 kB] Get:127 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-3+b1 [11.9 MB] Get:128 http://localhost:3142/debian sid/main amd64 ncbi-blast+-legacy all 2.12.0+ds-3 [13.5 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 113 MB in 13s (8633 kB/s) Selecting previously unselected package libargon2-1:amd64. 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Unpacking libgcc-11-dev:armhf (11.3.0-5) ... Selecting previously unselected package liblmdb0:amd64. Preparing to unpack .../094-liblmdb0_0.9.24-1_amd64.deb ... Unpacking liblmdb0:amd64 (0.9.24-1) ... Selecting previously unselected package libmbedcrypto7:amd64. Preparing to unpack .../095-libmbedcrypto7_2.28.1-1_amd64.deb ... Unpacking libmbedcrypto7:amd64 (2.28.1-1) ... Selecting previously unselected package libmbedx509-1:amd64. Preparing to unpack .../096-libmbedx509-1_2.28.1-1_amd64.deb ... Unpacking libmbedx509-1:amd64 (2.28.1-1) ... Selecting previously unselected package libmbedtls14:amd64. Preparing to unpack .../097-libmbedtls14_2.28.1-1_amd64.deb ... Unpacking libmbedtls14:amd64 (2.28.1-1) ... Selecting previously unselected package libstdc++-11-dev:armhf. Preparing to unpack .../098-libstdc++-11-dev_11.3.0-5_armhf.deb ... Unpacking libstdc++-11-dev:armhf (11.3.0-5) ... Selecting previously unselected package ncbi-data. 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Setting up gcc-11-base:armhf (11.3.0-5) ... Setting up libfile-which-perl (1.27-1) ... Setting up libapparmor1:amd64 (3.0.7-1) ... Setting up libc6-armhf-cross (2.34-3cross1) ... Setting up gcc-12-cross-base (12.2.0-1cross1) ... Setting up bsdextrautils (2.38.1-1) ... Setting up libmagic-mgc (1:5.41-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libgcc-s1-armhf-cross (12.2.0-1cross1) ... Setting up libargon2-1:amd64 (0~20171227-0.3) ... Setting up libdebhelper-perl (13.9.1) ... Setting up libsqlite3-0:amd64 (3.39.2-1) ... Setting up libmagic1:amd64 (1:5.41-4) ... Setting up linux-libc-dev:armhf (5.19.6-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-9) ... Setting up m4 (1.4.19-1) ... Setting up file (1:5.41-4) ... Setting up libatomic1-armhf-cross (12.2.0-1cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up gcc-12-base:armhf (12.2.0-1) ... Setting up libxml-sax-base-perl (1.09-2) ... Setting up libio-string-perl (1.08-3.1) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libstdc++6-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf-base:amd64 (12.2.0-1cross1) ... Setting up libmbedcrypto7:amd64 (2.28.1-1) ... Setting up linux-libc-dev-armhf-cross (5.18.16-1cross1) ... Setting up autopoint (0.21-9) ... Setting up libubsan1-armhf-cross (12.2.0-1cross1) ... Setting up libncursesw6:amd64 (6.3+20220423-2) ... Setting up autoconf (2.71-2) ... Setting up libfdisk1:amd64 (2.38.1-1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libmpdec3:amd64 (2.5.1-2) ... Setting up libsub-override-perl (0.09-3) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up binutils-arm-linux-gnueabihf (2.38.90.20220713-2) ... Setting up libelf1:amd64 (0.187-2) ... Setting up libjson-c5:amd64 (0.16-1) ... Setting up readline-common (8.2~rc2-2) ... Setting up libxml2:amd64 (2.9.14+dfsg-1+b1) ... Setting up liblocale-gettext-perl (1.07-4+b2) ... Setting up libkmod2:amd64 (30+20220630-3) ... Setting up libgclib3:amd64 (0.12.7+ds-4) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libgomp1-armhf-cross (12.2.0-1cross1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up libasan8-armhf-cross (12.2.0-1cross1) ... Setting up gettext (0.21-9) ... Setting up libmbedx509-1:amd64 (2.28.1-1) ... Setting up libmbedtls14:amd64 (2.28.1-1) ... Setting up libtool (2.4.7-4) ... Setting up libreadline8:amd64 (8.2~rc2-2) ... Setting up libc6-dev-armhf-cross (2.34-3cross1) ... Setting up cpp-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libpython3.10-stdlib:amd64 (3.10.6-1) ... Setting up dh-autoreconf (20) ... Setting up cdbfasta (1.00+git20181005.014498c+dfsg-4) ... Setting up libsystemd-shared:amd64 (251.4-3) ... Setting up ucf (3.0043) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up libgcc-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up groff-base (1.22.4-8) ... Setting up cpp-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up libpython3-stdlib:amd64 (3.10.6-1) ... Setting up python3.10 (3.10.6-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up python3 (3.10.6-1) ... Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ncbi-blast+ (2.12.0+ds-3+b1) ... Setting up libstdc++-12-dev-armhf-cross (12.2.0-1cross1) ... Setting up gcc-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up ncbi-blast+-legacy (2.12.0+ds-3) ... Setting up g++-12-arm-linux-gnueabihf (12.2.0-1cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up g++-arm-linux-gnueabihf (4:12.2.0-1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up crossbuild-essential-armhf (12.9) ... Setting up libdevmapper1.02.1:amd64 (2:1.02.185-1) ... Setting up dmsetup (2:1.02.185-1) ... Setting up libcryptsetup12:amd64 (2:2.5.0-2) ... Setting up systemd (251.4-3) ... Created symlink /etc/systemd/system/getty.target.wants/getty@tty1.service → /lib/systemd/system/getty@.service. Created symlink /etc/systemd/system/multi-user.target.wants/remote-fs.target → /lib/systemd/system/remote-fs.target. Created symlink /etc/systemd/system/sysinit.target.wants/systemd-pstore.service → /lib/systemd/system/systemd-pstore.service. Initializing machine ID from random generator. Setting up man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Created symlink /etc/systemd/system/timers.target.wants/man-db.timer → /lib/systemd/system/man-db.timer. Setting up libgcc-s1:armhf (12.2.0-1) ... Setting up libc6:armhf (2.34-7) ... Setting up libstdc++6:armhf (12.2.0-1) ... Setting up libkeyutils1:armhf (1.6.3-1) ... Setting up libssl3:armhf (3.0.5-2) ... Setting up debhelper (13.9.1) ... Setting up libcrypt1:armhf (1:4.4.28-2) ... Setting up libcom-err2:armhf (1.46.5-2) ... Setting up libgomp1:armhf (12.2.0-1) ... Setting up libasan6:armhf (11.3.0-5) ... Setting up libkrb5support0:armhf (1.20-1) ... Setting up libatomic1:armhf (12.2.0-1) ... Setting up libk5crypto3:armhf (1.20-1) ... Setting up libubsan1:armhf (12.2.0-1) ... Setting up libgcc-11-dev:armhf (11.3.0-5) ... Setting up libcrypt-dev:armhf (1:4.4.28-2) ... Setting up libkrb5-3:armhf (1.20-1) ... Setting up libgssapi-krb5-2:armhf (1.20-1) ... Setting up libtirpc3:armhf (1.3.3+ds-1) ... Setting up libtirpc-dev:armhf (1.3.3+ds-1) ... Setting up libnsl2:armhf (1.3.0-2) ... Setting up libnsl-dev:armhf (1.3.0-2) ... Setting up libc6-dev:armhf (2.34-7) ... Setting up libstdc++-11-dev:armhf (11.3.0-5) ... Setting up sbuild-build-depends-main-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-15-amd64 #1 SMP Debian 5.10.120-1 (2022-06-09) amd64 (x86_64) Toolchain package versions: binutils_2.38.90.20220713-2 dpkg-dev_1.21.9 g++-11_11.3.0-5 g++-12_12.2.0-1 gcc-11_11.3.0-5 gcc-12_12.2.0-1 libc6-dev_2.34-7 libstdc++-11-dev_11.3.0-5 libstdc++-12-dev_12.2.0-1 libstdc++-12-dev-armhf-cross_12.2.0-1cross1 libstdc++6_12.2.0-1 libstdc++6-armhf-cross_12.2.0-1cross1 linux-libc-dev_5.19.6-1 Package versions: adduser_3.128 apt_2.5.2 autoconf_2.71-2 automake_1:1.16.5-1.3 autopoint_0.21-9 autotools-dev_20220109.1 base-files_12.2 base-passwd_3.6.0 bash_5.2~rc2-2 binutils_2.38.90.20220713-2 binutils-arm-linux-gnueabihf_2.38.90.20220713-2 binutils-common_2.38.90.20220713-2 binutils-x86-64-linux-gnu_2.38.90.20220713-2 bsdextrautils_2.38.1-1 bsdutils_1:2.38.1-1 build-essential_12.9 bzip2_1.0.8-5 cdbfasta_1.00+git20181005.014498c+dfsg-4 coreutils_8.32-4.1 cpp_4:12.2.0-1 cpp-11_11.3.0-5 cpp-12_12.2.0-1 cpp-12-arm-linux-gnueabihf_12.2.0-1cross1 cpp-arm-linux-gnueabihf_4:12.2.0-1 cross-config_2.6.18+nmu2 crossbuild-essential-armhf_12.9 dash_0.5.11+git20210903+057cd650a4ed-9 debconf_1.5.79 debhelper_13.9.1 debian-archive-keyring_2021.1.1 debianutils_5.7-0.3 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.8-1 dmsetup_2:1.02.185-1 dpkg_1.21.9 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.9 dwz_0.14-1 e2fsprogs_1.46.5-2 fakeroot_1.29-1 file_1:5.41-4 findutils_4.9.0-3 g++_4:12.2.0-1 g++-11_11.3.0-5 g++-12_12.2.0-1 g++-12-arm-linux-gnueabihf_12.2.0-1cross1 g++-arm-linux-gnueabihf_4:12.2.0-1 gcc_4:12.2.0-1 gcc-11_11.3.0-5 gcc-11-base_11.3.0-5 gcc-12_12.2.0-1 gcc-12-arm-linux-gnueabihf_12.2.0-1cross1 gcc-12-arm-linux-gnueabihf-base_12.2.0-1cross1 gcc-12-base_12.2.0-1 gcc-12-cross-base_12.2.0-1cross1 gcc-9-base_9.5.0-2 gcc-arm-linux-gnueabihf_4:12.2.0-1 gettext_0.21-9 gettext-base_0.21-9 gpgv_2.2.35-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.12-1 hostname_3.23 init-system-helpers_1.64 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapparmor1_3.0.7-1 libapt-pkg6.0_2.5.2 libarchive-zip-perl_1.68-1 libargon2-1_0~20171227-0.3 libasan6_11.3.0-5 libasan8_12.2.0-1 libasan8-armhf-cross_12.2.0-1cross1 libatomic1_12.2.0-1 libatomic1-armhf-cross_12.2.0-1cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.7-1 libaudit1_1:3.0.7-1+b1 libbinutils_2.38.90.20220713-2 libblkid1_2.38.1-1 libbz2-1.0_1.0.8-5 libc-bin_2.34-7 libc-dev-bin_2.34-7 libc6_2.34-7 libc6-armhf-cross_2.34-3cross1 libc6-dev_2.34-7 libc6-dev-armhf-cross_2.34-3cross1 libcap-ng0_0.8.3-1+b1 libcap2_1:2.44-1 libcc1-0_12.2.0-1 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.28-2 libcrypt1_1:4.4.28-2 libcryptsetup12_2:2.5.0-2 libctf-nobfd0_2.38.90.20220713-2 libctf0_2.38.90.20220713-2 libdb5.3_5.3.28+dfsg1-0.10 libdebconfclient0_0.264 libdebhelper-perl_13.9.1 libdebian-dpkgcross-perl_2.6.18+nmu2 libdevmapper1.02.1_2:1.02.185-1 libdpkg-perl_1.21.9 libelf1_0.187-2 libexpat1_2.4.8-1 libext2fs2_1.46.5-2 libfakeroot_1.29-1 libfdisk1_2.38.1-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.27-1 libgcc-11-dev_11.3.0-5 libgcc-12-dev_12.2.0-1 libgcc-12-dev-armhf-cross_12.2.0-1cross1 libgcc-s1_12.2.0-1 libgcc-s1-armhf-cross_12.2.0-1cross1 libgclib3_0.12.7+ds-4 libgcrypt20_1.10.1-2 libgdbm-compat4_1.23-1+b1 libgdbm6_1.23-1+b1 libgmp10_2:6.2.1+dfsg1-1 libgnutls30_3.7.7-2 libgomp1_12.2.0-1 libgomp1-armhf-cross_12.2.0-1cross1 libgpg-error0_1.45-2 libgprofng0_2.38.90.20220713-2 libgssapi-krb5-2_1.20-1 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login_1:4.11.1+dfsg1-2 logsave_1.46.5-2 lsb-base_11.2 m4_1.4.19-1 make_4.3-4.1 man-db_2.10.2-2 mawk_1.3.4.20200120-3.1 media-types_8.0.0 mount_2.38.1-1 ncbi-blast+_2.12.0+ds-3+b1 ncbi-blast+-legacy_2.12.0+ds-3 ncbi-data_6.1.20170106+dfsg1-10 ncurses-base_6.3+20220423-2 ncurses-bin_6.3+20220423-2 passwd_1:4.11.1+dfsg1-2 patch_2.7.6-7 perl_5.34.0-5 perl-base_5.34.0-5 perl-modules-5.34_5.34.0-5 po-debconf_1.0.21+nmu1 python3_3.10.6-1 python3-minimal_3.10.6-1 python3.10_3.10.6-1 python3.10-minimal_3.10.6-1 readline-common_8.2~rc2-2 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 systemd_251.4-3 sysvinit-utils_3.04-1 tar_1.34+dfsg-1 tzdata_2022c-1 ucf_3.0043 util-linux_2.38.1-1 util-linux-extra_2.38.1-1 xz-utils_5.2.5-2.1 zlib1g_1:1.2.11.dfsg-4.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: microbiomeutil Binary: microbiomeutil, chimeraslayer, nast-ier, wigeon, microbiomeutil-data Architecture: any all Version: 20101212+dfsg1-5 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: http://microbiomeutil.sourceforge.net/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper Package-List: chimeraslayer deb science optional arch=all microbiomeutil deb science optional arch=all microbiomeutil-data deb science optional arch=all nast-ier deb science optional arch=any wigeon deb science optional arch=all Checksums-Sha1: 514fd1683e42cf11b20fe3b5c78a63a1c67c1b58 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 0fbbf9f73634d17519437cfad6d2a4db5bb5d2c8 10428 microbiomeutil_20101212+dfsg1-5.debian.tar.xz Checksums-Sha256: f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz f518be0f2368f906c4e75f45e1ac1bfa2a5f2827b4658638bf4485f917d8d26f 10428 microbiomeutil_20101212+dfsg1-5.debian.tar.xz Files: c77392b26d155fcfccee367dcea6c53d 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz ebfa072b03f69c812c763b14e41941cd 10428 microbiomeutil_20101212+dfsg1-5.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHccc0RHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEy/RAAlS39x/trl/o1K1hO0xfiaGpPErsu4opC byy+d+qpZVDhpF4uTFEgXcaqxRBF39Yh1n9h5CR1X+/kHGxZUF+L5PS+TDTvcz+j 1/eWpVF4KB5OK1e+yUjXv17G6UQRZVetV9o0vP70r1KmoDU0M4nGfYXBCByn6OJO fis/OI/rDeF4tk7TTkJVZ4xwhas6Z4JMk3z/Yw6eRmqctoxpHlD7oY4Eadb02k0W Jy6L7FVj1wFvyyijsN3SdRNjMb6JI13HF0YYHXAUkoF22jRDPJmOgJSZqKL89UQr 1GzKvU6KQ7o83f31WxycWeIWdWwKSIgeQUBpSGYIINbUx5dPRT2ZIyBt08z3PlYK 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using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying find_relocated_resources.patch dpkg-source: info: applying find_relocated_libraries.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying enable_tests_in_local_dir.patch dpkg-source: info: applying cross.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-13d69fec-43dc-419e-bdb3-77a9eff1435d SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package microbiomeutil dpkg-buildpackage: info: source version 20101212+dfsg1-5 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' cd ./sample_data; make clean make[4]: Entering directory '/<>/NAST-iEr/sample_data' rm -f tmp.* make[4]: Leaving directory '/<>/NAST-iEr/sample_data' rm -f NAST-iEr make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' cd ./sample_data; make clean make[4]: Entering directory '/<>/ChimeraSlayer/sample_data' rm -f chims.NAST.* rm -f sample_DB.NAST.cidx rm -f sample_DB.fasta.* rm -f tmp.* rm -f formatdb.log make[4]: Leaving directory '/<>/ChimeraSlayer/sample_data' make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' cd ./sample_data; make clean make[4]: Entering directory '/<>/WigeoN/sample_data' rm -f tmp.* rm -f chims.NAST.* make[4]: Leaving directory '/<>/WigeoN/sample_data' make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' rm -f *fasta.* make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' rm -f RESOURCES/rRNA16S.gold.fasta.n* RESOURCES/*.cidx rm -f formatdb.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' arm-linux-gnueabihf-gcc -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now NAST-iEr.c -o NAST-iEr NAST-iEr.c: In function ‘main’: NAST-iEr.c:106:15: warning: implicit declaration of function ‘isprint’ [-Wimplicit-function-declaration] 106 | if (isprint (optopt)) { | ^~~~~~~ NAST-iEr.c:5:1: note: include ‘’ or provide a declaration of ‘isprint’ 4 | #include +++ |+#include 5 | make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' #Pre-make indexes for ChimeraSlayer, otherwise it tries to write them #to the non-writeable dir on first run and blows up formatdb -p F -i RESOURCES/rRNA16S.gold.fasta 2>/dev/null Building a new DB, current time: 09/04/2022 01:56:14 New DB name: /<>/RESOURCES/rRNA16S.gold.fasta New DB title: RESOURCES/rRNA16S.gold.fasta Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 5181 sequences in 0.165281 seconds. cdbfasta -C RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta 5181 entries from file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta were indexed in file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx make[1]: Leaving directory '/<>' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install -XMakefile -Xsample_data -XLICENSE -XNAST-iEr.c find debian -name '*.pl' -o -name '*.pm' | xargs sed -i 's|/usr/bin/env perl|/usr/bin/perl|g' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples for mod in ChimeraSlayer NAST-iEr WigeoN ; do \ mkdir -p /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ cp -a ${mod}/sample_data/* /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ sed -i -e "s?../${mod}?${mod}?" \ -e "s?^.*\(/util/show_malign_no_gap.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(/run_NAST-iEr.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(ChimeraSlayer.pl\)?/usr/lib/ChimeraSlayer/\1?" \ -e "s?^.*\(/run_WigeoN.pl\)?/usr/lib/WigeoN\1?" \ /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod}/runMe.sh ; \ done sed -i '1i #!/bin/sh' /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/WigeoN/runMe.sh make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -type f -name '*.pm' -print0 | xargs -0r chmod a-x find debian -type f -name 'genus_counter.pl' -print0 | xargs -0r chmod a+x make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'nast-ier' in '../nast-ier_20101212+dfsg1-5_armhf.deb'. dpkg-deb: building package 'nast-ier-dbgsym' in '../nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb'. dpkg-genbuildinfo --build=any -O../microbiomeutil_20101212+dfsg1-5_armhf.buildinfo dpkg-genchanges --build=any -O../microbiomeutil_20101212+dfsg1-5_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-09-04T01:56:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ microbiomeutil_20101212+dfsg1-5_armhf.changes: ---------------------------------------------- Format: 1.8 Date: Mon, 10 Jan 2022 17:29:54 +0100 Source: microbiomeutil Binary: nast-ier nast-ier-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 20101212+dfsg1-5 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: nast-ier - NAST-based DNA alignment tool Closes: 1003411 Changes: microbiomeutil (20101212+dfsg1-5) unstable; urgency=medium . [ Helmut Grohne ] * Do not hard code the build architecture compiler Closes: #1003411 . [ Andreas Tille ] * Standards-Version: 4.6.0 (routine-update) * Add missing build dependency on dh addon. * Fix typo in debian/rules rules: override_dh_auto_build => override_dh_auto_build, override_dh_fixperms => override_dh_fixperms * Apply multi-arch hints. + microbiomeutil-data: Add Multi-Arch: foreign. Checksums-Sha1: f1c7bb598fb6a91b9f892440cff489b968ad63c6 6292 microbiomeutil_20101212+dfsg1-5_armhf.buildinfo 59fc6c5f8c7934e6e368f849d23911eb3884487f 14004 nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb a20b7880b2a39be69e156f202c02ffb5d831586b 20660 nast-ier_20101212+dfsg1-5_armhf.deb Checksums-Sha256: 4ec682a05225b6bd3c5b8d21992a8aed89df528af90c3825ce43e1fa8a965e7b 6292 microbiomeutil_20101212+dfsg1-5_armhf.buildinfo 49e0be83eace9c97bf0eb25bd7788d7808335cf4e8764cb9ecec0ca1dccc4907 14004 nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb 2196f375d42baf283a468416b7d891ada84e21b63a529e3662d7e2eb08a30d83 20660 nast-ier_20101212+dfsg1-5_armhf.deb Files: 93f6d80c3847d07154e783fa08683621 6292 science optional microbiomeutil_20101212+dfsg1-5_armhf.buildinfo 19fbf105068ac2a8805a0beb4ae2a9a2 14004 debug optional nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb 190352cb7e79e4998dedb2d00fbafe32 20660 science optional nast-ier_20101212+dfsg1-5_armhf.deb /<>/microbiomeutil_20101212+dfsg1-5_armhf.changes.new could not be renamed to /<>/microbiomeutil_20101212+dfsg1-5_armhf.changes: Illegal seek Distribution field may be wrong!!! +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: microbiomeutil Binary: nast-ier nast-ier-dbgsym Architecture: armhf Version: 20101212+dfsg1-5 Checksums-Md5: 19fbf105068ac2a8805a0beb4ae2a9a2 14004 nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb 190352cb7e79e4998dedb2d00fbafe32 20660 nast-ier_20101212+dfsg1-5_armhf.deb Checksums-Sha1: 59fc6c5f8c7934e6e368f849d23911eb3884487f 14004 nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb a20b7880b2a39be69e156f202c02ffb5d831586b 20660 nast-ier_20101212+dfsg1-5_armhf.deb Checksums-Sha256: 49e0be83eace9c97bf0eb25bd7788d7808335cf4e8764cb9ecec0ca1dccc4907 14004 nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb 2196f375d42baf283a468416b7d891ada84e21b63a529e3662d7e2eb08a30d83 20660 nast-ier_20101212+dfsg1-5_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 04 Sep 2022 01:56:16 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.3), autopoint (= 0.21-9), autotools-dev (= 20220109.1), base-files (= 12.2), base-passwd (= 3.6.0), bash (= 5.2~rc2-2), binutils (= 2.38.90.20220713-2), binutils-common (= 2.38.90.20220713-2), binutils-x86-64-linux-gnu (= 2.38.90.20220713-2), bsdextrautils (= 2.38.1-1), bsdutils (= 1:2.38.1-1), build-essential (= 12.9), bzip2 (= 1.0.8-5), cdbfasta (= 1.00+git20181005.014498c+dfsg-4), coreutils (= 8.32-4.1), cpp (= 4:12.2.0-1), cpp-11 (= 11.3.0-5), cpp-12 (= 12.2.0-1), dash (= 0.5.11+git20210903+057cd650a4ed-9), debconf (= 1.5.79), debhelper (= 13.9.1), debianutils (= 5.7-0.3), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.8-1), dmsetup (= 2:1.02.185-1), dpkg (= 1.21.9), dpkg-dev (= 1.21.9), dwz (= 0.14-1), file (= 1:5.41-4), findutils (= 4.9.0-3), g++ (= 4:12.2.0-1), g++-12 (= 12.2.0-1), gcc (= 4:12.2.0-1), gcc-11 (= 11.3.0-5), gcc-11-base (= 11.3.0-5), gcc-12 (= 12.2.0-1), gcc-12-base (= 12.2.0-1), gettext (= 0.21-9), gettext-base (= 0.21-9), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.12-1), hostname (= 3.23), init-system-helpers (= 1.64), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libapparmor1 (= 3.0.7-1), libarchive-zip-perl (= 1.68-1), libargon2-1 (= 0~20171227-0.3), libasan6 (= 11.3.0-5), libasan8 (= 12.2.0-1), libatomic1 (= 12.2.0-1), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.7-1), libaudit1 (= 1:3.0.7-1+b1), libbinutils (= 2.38.90.20220713-2), libblkid1 (= 2.38.1-1), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.34-7), libc-dev-bin (= 2.34-7), libc6 (= 2.34-7), libc6-dev (= 2.34-7), libcap-ng0 (= 0.8.3-1+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 12.2.0-1), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.28-2), libcrypt1 (= 1:4.4.28-2), libcryptsetup12 (= 2:2.5.0-2), libctf-nobfd0 (= 2.38.90.20220713-2), libctf0 (= 2.38.90.20220713-2), libdb5.3 (= 5.3.28+dfsg1-0.10), libdebconfclient0 (= 0.264), libdebhelper-perl (= 13.9.1), libdevmapper1.02.1 (= 2:1.02.185-1), libdpkg-perl (= 1.21.9), libelf1 (= 0.187-2), libexpat1 (= 2.4.8-1), libfdisk1 (= 2.38.1-1), libffi8 (= 3.4.2-4), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.3.0-5), libgcc-12-dev (= 12.2.0-1), libgcc-s1 (= 12.2.0-1), libgclib3 (= 0.12.7+ds-4), libgcrypt20 (= 1.10.1-2), libgdbm-compat4 (= 1.23-1+b1), libgdbm6 (= 1.23-1+b1), libgmp10 (= 2:6.2.1+dfsg1-1), libgomp1 (= 12.2.0-1), libgpg-error0 (= 1.45-2), libgprofng0 (= 2.38.90.20220713-2), libgssapi-krb5-2 (= 1.20-1), libicu71 (= 71.1-3), libip4tc2 (= 1.8.8-1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-1), libjson-c5 (= 0.16-1), libk5crypto3 (= 1.20-1), libkeyutils1 (= 1.6.3-1), libkmod2 (= 30+20220630-3), libkrb5-3 (= 1.20-1), libkrb5support0 (= 1.20-1), liblmdb0 (= 0.9.24-1), liblsan0 (= 12.2.0-1), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.2.5-2.1), libmagic-mgc (= 1:5.41-4), libmagic1 (= 1:5.41-4), libmbedcrypto7 (= 2.28.1-1), libmbedtls14 (= 2.28.1-1), libmbedx509-1 (= 2.28.1-1), libmount1 (= 2.38.1-1), libmpc3 (= 1.2.1-2), libmpdec3 (= 2.5.1-2), libmpfr6 (= 4.1.0-3), libncursesw6 (= 6.3+20220423-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.5.2-2), libpam-modules-bin (= 1.5.2-2), libpam-runtime (= 1.5.2-2), libpam0g (= 1.5.2-2), libpcre2-8-0 (= 10.40-1), libpcre3 (= 2:8.39-14), libperl5.34 (= 5.34.0-5), libpipeline1 (= 1.5.6-2), libpython3-stdlib (= 3.10.6-1), libpython3.10-minimal (= 3.10.6-1), libpython3.10-stdlib (= 3.10.6-1), libquadmath0 (= 12.2.0-1), libreadline8 (= 8.2~rc2-2), libseccomp2 (= 2.5.4-1+b1), libselinux1 (= 3.4-1+b1), libsmartcols1 (= 2.38.1-1), libsqlite3-0 (= 3.39.2-1), libssl3 (= 3.0.5-2), libstdc++-12-dev (= 12.2.0-1), libstdc++6 (= 12.2.0-1), libsub-override-perl (= 0.09-3), libsystemd-shared (= 251.4-3), libsystemd0 (= 251.4-3), libtinfo6 (= 6.3+20220423-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-4), libtsan0 (= 11.3.0-5), libtsan2 (= 12.2.0-1), libubsan1 (= 12.2.0-1), libuchardet0 (= 0.0.7-1), libudev1 (= 251.4-3), libunistring2 (= 1.0-1), libuuid1 (= 2.38.1-1), libxml2 (= 2.9.14+dfsg-1+b1), libzstd1 (= 1.5.2+dfsg-1), linux-libc-dev (= 5.19.6-1), login (= 1:4.11.1+dfsg1-2), lsb-base (= 11.2), m4 (= 1.4.19-1), make (= 4.3-4.1), man-db (= 2.10.2-2), mawk (= 1.3.4.20200120-3.1), media-types (= 8.0.0), mount (= 2.38.1-1), ncbi-blast+ (= 2.12.0+ds-3+b1), ncbi-blast+-legacy (= 2.12.0+ds-3), ncbi-data (= 6.1.20170106+dfsg1-10), ncurses-base (= 6.3+20220423-2), ncurses-bin (= 6.3+20220423-2), patch (= 2.7.6-7), perl (= 5.34.0-5), perl-base (= 5.34.0-5), perl-modules-5.34 (= 5.34.0-5), po-debconf (= 1.0.21+nmu1), python3 (= 3.10.6-1), python3-minimal (= 3.10.6-1), python3.10 (= 3.10.6-1), python3.10-minimal (= 3.10.6-1), readline-common (= 8.2~rc2-2), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), systemd (= 251.4-3), sysvinit-utils (= 3.04-1), tar (= 1.34+dfsg-1), util-linux (= 2.38.1-1), util-linux-extra (= 2.38.1-1), xz-utils (= 5.2.5-2.1), zlib1g (= 1:1.2.11.dfsg-4.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1641832194" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ nast-ier-dbgsym_20101212+dfsg1-5_armhf.deb ------------------------------------------ new Debian package, version 2.0. size 14004 bytes: control archive=552 bytes. 397 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: nast-ier-dbgsym Source: microbiomeutil Version: 20101212+dfsg1-5 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 28 Depends: nast-ier (= 20101212+dfsg1-5) Section: debug Priority: optional Description: debug symbols for nast-ier Build-Ids: eb186631790e2b32c8aaeb459ea0d2c68c1be4ab drwxr-xr-x root/root 0 2022-01-10 16:29 ./ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/debug/.build-id/eb/ -rw-r--r-- root/root 17452 2022-01-10 16:29 ./usr/lib/debug/.build-id/eb/186631790e2b32c8aaeb459ea0d2c68c1be4ab.debug drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-01-10 16:29 ./usr/share/doc/nast-ier-dbgsym -> nast-ier nast-ier_20101212+dfsg1-5_armhf.deb ----------------------------------- new Debian package, version 2.0. size 20660 bytes: control archive=1384 bytes. 744 bytes, 20 lines control 1533 bytes, 20 lines md5sums Package: nast-ier Source: microbiomeutil Version: 20101212+dfsg1-5 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 148 Depends: libc6 (>= 2.34), microbiomeutil-data, cdbfasta Recommends: ncbi-blast+ Section: science Priority: optional Homepage: http://microbiomeutil.sourceforge.net/ Description: NAST-based DNA alignment tool The NAST-iEr alignment utility aligns a single raw nucleotide sequence against one or more NAST formatted sequences. . The alignment algorithm involves global dynamic programming profile alignment to fixed (NAST-formatted) multiply aligned template sequences without any end-gap penalty. . NAST-iEr is part of the microbiomeutil suite. drwxr-xr-x root/root 0 2022-01-10 16:29 ./ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/bin/ lrwxrwxrwx root/root 0 2022-01-10 16:29 ./usr/bin/nast-ier -> ../lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/NAST-iEr/ -rwxr-xr-x root/root 66992 2022-01-10 16:29 ./usr/lib/NAST-iEr/NAST-iEr drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/NAST-iEr/PerlLib/ -rw-r--r-- root/root 2453 2022-01-10 16:29 ./usr/lib/NAST-iEr/PerlLib/CdbTools.pm -rw-r--r-- root/root 2980 2022-01-10 16:29 ./usr/lib/NAST-iEr/PerlLib/Fasta_reader.pm -rw-r--r-- root/root 10294 2022-01-10 16:29 ./usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/lib/NAST-iEr/README drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/NAST-iEr/iterative_refinement/ -rwxr-xr-x root/root 615 2022-01-10 16:29 ./usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl -rwxr-xr-x root/root 624 2022-01-10 16:29 ./usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl -rwxr-xr-x root/root 411 2022-01-10 16:29 ./usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl -rwxr-xr-x root/root 5375 2022-01-10 16:29 ./usr/lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/ -rwxr-xr-x root/root 1425 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/apply_NAST_MASK.pl drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/masks/ -rw-r--r-- root/root 7735 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/eco.prokMSA -rw-r--r-- root/root 7821 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/lanemask.NAST -rwxr-xr-x root/root 1179 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl -rwxr-xr-x root/root 503 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl -rwxr-xr-x root/root 2748 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/show_malign_no_gap.pl -rwxr-xr-x root/root 2936 2022-01-10 16:29 ./usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/doc/nast-ier/ -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/share/doc/nast-ier/README -rw-r--r-- root/root 2067 2022-01-10 16:29 ./usr/share/doc/nast-ier/changelog.Debian.gz -rw-r--r-- root/root 1898 2022-01-10 16:29 ./usr/share/doc/nast-ier/copyright lrwxrwxrwx root/root 0 2022-01-10 16:29 ./usr/share/doc/nast-ier/examples -> ../microbiomeutil-data/examples/NAST-iEr drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-10 16:29 ./usr/share/man/man1/ -rw-r--r-- root/root 672 2022-01-10 16:29 ./usr/share/man/man1/nast-ier.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [556 B] Get:5 copy:/<>/apt_archive ./ Packages [646 B] Fetched 2165 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 130 newly installed, 0 to remove and 0 not upgraded. Need to get 13.2 MB of archives. After this operation, 49.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 netbase all 6.3 [19.9 kB] Get:3 http://localhost:3142/debian sid/main amd64 openssl amd64 3.0.5-2 [1421 kB] Get:4 http://localhost:3142/debian sid/main amd64 ca-certificates all 20211016 [156 kB] Get:5 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:6 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.5-4 [51.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.35-3 [578 kB] Get:8 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.35-3 [961 kB] Get:9 http://localhost:3142/debian sid/main amd64 iso-codes all 4.11.0-1 [2834 kB] Get:10 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-2 [14.2 kB] Get:11 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b1 [72.1 kB] Get:12 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-2 [11.2 kB] Get:13 http://localhost:3142/debian sid/main amd64 libdynaloader-functions-perl all 0.003-2 [13.1 kB] Get:14 http://localhost:3142/debian sid/main amd64 libdevel-callchecker-perl amd64 0.008-1+b3 [16.0 kB] Get:15 http://localhost:3142/debian sid/main amd64 libparams-classify-perl amd64 0.015-2 [25.6 kB] Get:16 http://localhost:3142/debian sid/main amd64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 libtry-tiny-perl all 0.31-1 [24.2 kB] Get:18 http://localhost:3142/debian sid/main amd64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:19 http://localhost:3142/debian sid/main amd64 libsub-exporter-progressive-perl all 0.001013-2 [8044 B] Get:20 http://localhost:3142/debian sid/main amd64 libvariable-magic-perl amd64 0.62-2 [45.7 kB] Get:21 http://localhost:3142/debian sid/main amd64 libb-hooks-endofscope-perl all 0.26-1 [19.6 kB] Get:22 http://localhost:3142/debian sid/main amd64 libberkeleydb-perl amd64 0.64-1+b2 [124 kB] Get:23 http://localhost:3142/debian sid/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 libhtml-tagset-perl all 3.20-5 [13.1 kB] Get:25 http://localhost:3142/debian sid/main amd64 libregexp-ipv6-perl all 0.03-3 [5212 B] Get:26 http://localhost:3142/debian sid/main amd64 liburi-perl all 5.12-1 [93.7 kB] Get:27 http://localhost:3142/debian sid/main amd64 libhtml-parser-perl amd64 3.78-1 [105 kB] Get:28 http://localhost:3142/debian sid/main amd64 libcgi-pm-perl all 4.54-1 [224 kB] Get:29 http://localhost:3142/debian sid/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:30 http://localhost:3142/debian sid/main amd64 libclass-method-modifiers-perl all 2.13-2 [19.4 kB] Get:31 http://localhost:3142/debian sid/main amd64 libclass-xsaccessor-perl amd64 1.19-4 [37.5 kB] Get:32 http://localhost:3142/debian sid/main amd64 libclone-perl amd64 0.45-1+b2 [15.5 kB] Get:33 http://localhost:3142/debian sid/main amd64 libconfig-tiny-perl all 2.28-1 [17.3 kB] Get:34 http://localhost:3142/debian sid/main amd64 libparams-util-perl amd64 1.102-1+b2 [25.7 kB] Get:35 http://localhost:3142/debian sid/main amd64 libsub-install-perl all 0.928-2 [11.0 kB] Get:36 http://localhost:3142/debian sid/main amd64 libdata-optlist-perl all 0.112-1 [11.8 kB] Get:37 http://localhost:3142/debian sid/main amd64 libsub-exporter-perl all 0.988-1 [51.9 kB] Get:38 http://localhost:3142/debian sid/main amd64 libconst-fast-perl all 0.014-2 [8792 B] Get:39 http://localhost:3142/debian sid/main amd64 libcpanel-json-xs-perl amd64 4.32-1 [130 kB] Get:40 http://localhost:3142/debian sid/main amd64 libdevel-stacktrace-perl all 2.0400-1 [28.6 kB] Get:41 http://localhost:3142/debian sid/main amd64 libexception-class-perl all 1.45-1 [34.6 kB] Get:42 http://localhost:3142/debian sid/main amd64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:43 http://localhost:3142/debian sid/main amd64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:44 http://localhost:3142/debian sid/main amd64 libexporter-tiny-perl all 1.004000-1 [38.7 kB] Get:45 http://localhost:3142/debian sid/main amd64 liblist-moreutils-xs-perl amd64 0.430-3 [40.3 kB] Get:46 http://localhost:3142/debian sid/main amd64 liblist-moreutils-perl all 0.430-2 [46.9 kB] Get:47 http://localhost:3142/debian sid/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:48 http://localhost:3142/debian sid/main amd64 libdata-messagepack-perl amd64 1.02-1 [35.7 kB] Get:49 http://localhost:3142/debian sid/main amd64 libnet-domain-tld-perl all 1.75-2 [33.7 kB] Get:50 http://localhost:3142/debian sid/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:51 http://localhost:3142/debian sid/main amd64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:52 http://localhost:3142/debian sid/main amd64 libnet-netmask-perl all 2.0001-1 [32.2 kB] Get:53 http://localhost:3142/debian sid/main amd64 libnetaddr-ip-perl amd64 4.079+dfsg-2 [104 kB] Get:54 http://localhost:3142/debian sid/main amd64 libdata-validate-ip-perl all 0.30-1 [21.0 kB] Get:55 http://localhost:3142/debian sid/main amd64 libdata-validate-uri-perl all 0.07-2 [11.2 kB] Get:56 http://localhost:3142/debian sid/main amd64 libdevel-size-perl amd64 0.83-2 [25.8 kB] Get:57 http://localhost:3142/debian sid/main amd64 libemail-address-xs-perl amd64 1.05-1 [29.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libencode-locale-perl all 1.05-2 [13.5 kB] Get:59 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:60 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-1 [16.4 kB] Get:61 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-2 [7448 B] Get:62 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-2 [8992 B] Get:63 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-2 [28.4 kB] Get:64 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.05-2 [10.5 kB] Get:66 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.15-1 [12.6 kB] Get:67 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:68 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:69 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-1 [19.9 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.37-1 [80.9 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.10-1 [24.0 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-2 [21.6 kB] Get:73 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-2 [213 kB] Get:74 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:75 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-1 [12.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:77 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2 [343 kB] Get:78 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.074-2 [220 kB] Get:79 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:81 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:82 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.67-1 [194 kB] Get:83 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:84 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-1 [11.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-2 [34.2 kB] Get:87 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:90 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-1 [16.1 kB] Get:91 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-4 [42.0 kB] Get:92 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:93 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-3 [18.8 kB] Get:95 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:96 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005004-3 [60.5 kB] Get:98 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:99 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:100 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b2 [173 kB] Get:101 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:102 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-2 [11.9 kB] Get:103 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2 [13.7 kB] Get:104 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:105 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.122-1 [56.0 kB] Get:106 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1 [17.5 kB] Get:107 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.009-1+b1 [12.2 kB] Get:108 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b1 [46.9 kB] Get:109 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:110 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 4.025+ds-1 [103 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 4.025+ds-1 [104 kB] Get:112 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-2 [10.7 kB] Get:113 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.25-1 [53.3 kB] Get:114 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.27-1 [28.5 kB] Get:115 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2 [27.2 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5 [8656 B] Get:117 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.13-1+b1 [13.6 kB] Get:118 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b1 [197 kB] Get:119 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:120 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2 [73.0 kB] Get:121 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-1+b3 [20.3 kB] Get:122 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.15-1 [120 kB] Get:123 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:124 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.83+ds-1+b1 [35.9 kB] Get:125 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-4 [64.0 kB] Get:126 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:127 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:128 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:129 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-27 [172 kB] Get:130 http://localhost:3142/debian sid/main amd64 lintian all 2.115.3 [1417 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.2 MB in 0s (79.1 MB/s) Selecting previously unselected package netbase. (Reading database ... 21352 files and directories currently installed.) Preparing to unpack .../000-netbase_6.3_all.deb ... Unpacking netbase (6.3) ... Selecting previously unselected package openssl. Preparing to unpack .../001-openssl_3.0.5-2_amd64.deb ... Unpacking openssl (3.0.5-2) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../002-ca-certificates_20211016_all.deb ... Unpacking ca-certificates (20211016) ... Selecting previously unselected package diffstat. Preparing to unpack .../003-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../004-libassuan0_2.5.5-4_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-4) ... Selecting previously unselected package gpgconf. Preparing to unpack .../005-gpgconf_2.2.35-3_amd64.deb ... Unpacking gpgconf (2.2.35-3) ... Selecting previously unselected package gpg. Preparing to unpack .../006-gpg_2.2.35-3_amd64.deb ... 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Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../028-libclass-method-modifiers-perl_2.13-2_all.deb ... Unpacking libclass-method-modifiers-perl (2.13-2) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../029-libclass-xsaccessor-perl_1.19-4_amd64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4) ... Selecting previously unselected package libclone-perl. Preparing to unpack .../030-libclone-perl_0.45-1+b2_amd64.deb ... Unpacking libclone-perl (0.45-1+b2) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../031-libconfig-tiny-perl_2.28-1_all.deb ... Unpacking libconfig-tiny-perl (2.28-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../032-libparams-util-perl_1.102-1+b2_amd64.deb ... Unpacking libparams-util-perl (1.102-1+b2) ... Selecting previously unselected package libsub-install-perl. 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Unpacking libdevel-stacktrace-perl (2.0400-1) ... Selecting previously unselected package libexception-class-perl. Preparing to unpack .../039-libexception-class-perl_1.45-1_all.deb ... Unpacking libexception-class-perl (1.45-1) ... Selecting previously unselected package libiterator-perl. Preparing to unpack .../040-libiterator-perl_0.03+ds1-2_all.deb ... Unpacking libiterator-perl (0.03+ds1-2) ... Selecting previously unselected package libiterator-util-perl. Preparing to unpack .../041-libiterator-util-perl_0.02+ds1-2_all.deb ... Unpacking libiterator-util-perl (0.02+ds1-2) ... Selecting previously unselected package libexporter-tiny-perl. Preparing to unpack .../042-libexporter-tiny-perl_1.004000-1_all.deb ... Unpacking libexporter-tiny-perl (1.004000-1) ... Selecting previously unselected package liblist-moreutils-xs-perl. Preparing to unpack .../043-liblist-moreutils-xs-perl_0.430-3_amd64.deb ... Unpacking liblist-moreutils-xs-perl (0.430-3) ... 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Setting up plzip (1.10-4) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-1+b3) ... Setting up libmouse-perl (2.5.10-1+b2) ... Setting up libdata-messagepack-perl (1.02-1) ... Setting up libdynaloader-functions-perl (0.003-2) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-2) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-2) ... Setting up libcpanel-json-xs-perl:amd64 (4.32-1) ... Setting up libhtml-tagset-perl (3.20-5) ... Setting up libdevel-size-perl (0.83-2) ... Setting up unzip (6.0-27) ... Setting up liblwp-mediatypes-perl (6.04-1) ... Setting up libyaml-libyaml-perl (0.83+ds-1+b1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up perl-openssl-defaults:amd64 (7+b1) ... Setting up libmldbm-perl (2.05-3) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-2) ... Setting up libencode-locale-perl (1.05-2) ... Setting up libassuan0:amd64 (2.5.5-4) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl:amd64 (4.025+ds-1) ... Setting up liblist-utilsby-perl (0.12-1) ... Setting up libnet-netmask-perl (2.0001-1) ... Setting up libsub-install-perl (0.928-2) ... Setting up libnumber-compare-perl (0.03-2) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.25-1) ... Setting up libfile-find-rule-perl (0.34-2) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-2) ... Setting up libperlio-utf8-strict-perl (0.009-1+b1) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-2) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:amd64 (0.22-2) ... Setting up liblist-moreutils-xs-perl (0.430-3) ... Setting up libparams-util-perl (1.102-1+b2) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:amd64 (3.5.9-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-2) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libregexp-ipv6-perl (0.03-3) ... Setting up libsub-name-perl:amd64 (0.26-2) ... Setting up libsyntax-keyword-try-perl (0.27-1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:amd64 (0.634-1+b1) ... Setting up libpath-tiny-perl (0.122-1) ... Setting up lzop (1.04-2) ... Setting up gpgconf (2.2.35-3) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-2) ... Setting up netbase (6.3) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-4) ... Setting up libsort-versions-perl (1.62-2) ... Setting up libexporter-tiny-perl (1.004000-1) ... Setting up libterm-readkey-perl (2.38-2) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.0.5-2) ... Setting up libtext-levenshteinxs-perl (0.03-5) ... Setting up libperlio-gzip-perl (0.20-1) ... Setting up libhtml-html5-entities-perl (0.004-2) ... Setting up libsereal-decoder-perl (4.025+ds-1) ... Setting up libmarkdown2:amd64 (2.2.7-2) ... Setting up liburi-perl (5.12-1) ... Setting up iso-codes (4.11.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.35-3) ... Setting up libdata-validate-ip-perl (0.30-1) ... Setting up libemail-address-xs-perl (1.05-1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-1) ... Setting up libfile-listing-perl (6.15-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl:amd64 (0.13-1+b1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl (0.008-1+b3) ... Setting up ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 127 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.112-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.78-1) ... Setting up libio-socket-ssl-perl (2.074-2) ... Setting up libsub-exporter-perl (0.988-1) ... Setting up libhttp-message-perl (6.37-1) ... Setting up libhtml-form-perl (6.10-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-1) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-2) ... Setting up libparams-classify-perl:amd64 (0.015-2) ... Setting up libcgi-pm-perl (4.54-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005004-3) ... Setting up liblist-someutils-perl (0.58-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.67-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.15-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.115.3) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.34-7) ... Processing triggers for man-db (2.10.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20211016) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 53456 Build-Time: 3 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 26 Job: microbiomeutil_20101212+dfsg1-5 Lintian: pass Machine Architecture: amd64 Package: microbiomeutil Package-Time: 45 Source-Version: 20101212+dfsg1-5 Space: 53456 Status: successful Version: 20101212+dfsg1-5 -------------------------------------------------------------------------------- Finished at 2022-09-04T01:56:16Z Build needed 00:00:45, 53456k disk space