sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | microbiomeutil 20101212+dfsg1-6 (armhf) Thu, 11 Apr 2024 10:51:28 +0000 | +==============================================================================+ Package: microbiomeutil Version: 20101212+dfsg1-6 Source Version: 20101212+dfsg1-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: armhf Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-0d46ff2f-2153-4789-9792-9913db012055' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-y39NHD/resolver-oFWfNR' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-11-0806.24-F-2024-04-11-0204.27.pdiff [20.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-11-0806.24-F-2024-04-11-0204.27.pdiff [29.7 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-04-11-0806.24-F-2024-04-11-0204.27.pdiff [20.0 kB] Get:6 http://localhost:3142/debian sid/main armhf Packages [9449 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-04-11-0806.24-F-2024-04-11-0204.27.pdiff [29.7 kB] Fetched 9824 kB in 3s (3555 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 5310 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://localhost:3142/debian sid/main amd64 libc6-dev amd64 2.37-17 [1906 kB] Get:2 http://localhost:3142/debian sid/main amd64 libc-dev-bin amd64 2.37-17 [47.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 libc6 amd64 2.37-17 [2753 kB] Get:4 http://localhost:3142/debian sid/main amd64 libc-bin amd64 2.37-17 [603 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 5310 kB in 0s (158 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12865 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.37-17_amd64.deb ... Unpacking libc6-dev:amd64 (2.37-17) over (2.37-16) ... Preparing to unpack .../libc-dev-bin_2.37-17_amd64.deb ... Unpacking libc-dev-bin (2.37-17) over (2.37-16) ... Preparing to unpack .../libc6_2.37-17_amd64.deb ... Unpacking libc6:amd64 (2.37-17) over (2.37-16) ... Setting up libc6:amd64 (2.37-17) ... (Reading database ... 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Setting up libc6-dev:amd64 (2.37-17) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'microbiomeutil' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/microbiomeutil.git Please use: git clone https://salsa.debian.org/med-team/microbiomeutil.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1623 kB of source archives. Get:1 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-6 (dsc) [2410 B] Get:2 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-6 (tar) [1610 kB] Get:3 http://localhost:3142/debian sid/main microbiomeutil 20101212+dfsg1-6 (diff) [10.7 kB] Fetched 1623 kB in 0s (31.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/microbiomeutil-y39NHD/microbiomeutil-20101212+dfsg1' with '<>' I: NOTICE: Log filtering will replace 'build/microbiomeutil-y39NHD' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf Filtered Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armhf:amd64, libc-dev:armhf, libstdc++-dev:armhf dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [755 B] Get:5 copy:/<>/apt_archive ./ Packages [798 B] Fetched 2162 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cdbfasta cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgclib3 libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 libsqlite3-0 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal readline-common sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-arm-linux-gnueabihf gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armhf libc-l10n:armhf locales:armhf libnss-nis:armhf libnss-nisplus:armhf manpages-dev:armhf libstdc++-13-doc:armhf libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.11-venv python3.11-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx libidn2-0:armhf libarchive-cpio-perl libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl ca-certificates The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabihf bsdextrautils cdbfasta cpp-13-arm-linux-gnueabihf cpp-arm-linux-gnueabihf cross-config crossbuild-essential-armhf debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-13-arm-linux-gnueabihf g++-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf gcc-13-arm-linux-gnueabihf-base gcc-13-base:armhf gcc-13-cross-base gcc-14-base:armhf gcc-14-cross-base gcc-arm-linux-gnueabihf gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan8:armhf libasan8-armhf-cross libatomic1:armhf libatomic1-armhf-cross libc6:armhf libc6-armhf-cross libc6-dev:armhf libc6-dev-armhf-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:armhf libcrypt1:armhf libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libexpat1 libfakeroot libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-13-dev:armhf libgcc-13-dev-armhf-cross libgcc-s1:armhf libgcc-s1-armhf-cross libgclib3 libgomp1:armhf libgomp1-armhf-cross libicu72 libio-string-perl liblmdb0 liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto7t64 libmbedtls14t64 libmbedx509-1t64 libncursesw6 libpipeline1 libpython3-stdlib libpython3.11-minimal libpython3.11-stdlib libreadline8t64 libsqlite3-0 libstdc++-13-dev:armhf libstdc++-13-dev-armhf-cross libstdc++6:armhf libstdc++6-armhf-cross libsub-override-perl libtool libubsan1:armhf libubsan1-armhf-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl m4 man-db media-types ncbi-blast+ ncbi-blast+-legacy ncbi-data netbase po-debconf python3 python3-minimal python3.11 python3.11-minimal readline-common sbuild-build-depends-main-dummy:armhf sensible-utils ucf 0 upgraded, 107 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 420 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [944 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-7 [15.0 kB] Get:3 http://localhost:3142/debian sid/main amd64 libpython3.11-minimal amd64 3.11.9-1 [817 kB] Get:4 http://localhost:3142/debian sid/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:5 http://localhost:3142/debian sid/main amd64 python3.11-minimal amd64 3.11.9-1 [1879 kB] Get:6 http://localhost:3142/debian sid/main amd64 python3-minimal amd64 3.11.8-1 [26.3 kB] Get:7 http://localhost:3142/debian sid/main amd64 media-types all 10.1.0 [26.9 kB] Get:8 http://localhost:3142/debian sid/main amd64 netbase all 6.4 [12.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 libncursesw6 amd64 6.4+20240113-1 [135 kB] Get:10 http://localhost:3142/debian sid/main amd64 readline-common all 8.2-4 [69.3 kB] Get:11 http://localhost:3142/debian sid/main amd64 libreadline8t64 amd64 8.2-4 [167 kB] Get:12 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libgclib3 amd64 0.12.7+ds-5 [152 kB] Get:35 http://localhost:3142/debian sid/main amd64 cdbfasta amd64 1.00+git20230710.da8f5ba+dfsg-1 [128 kB] Get:36 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf-base amd64 13.2.0-12cross1 [42.6 kB] Get:37 http://localhost:3142/debian sid/main amd64 cpp-13-arm-linux-gnueabihf amd64 13.2.0-12cross1 [9286 kB] Get:38 http://localhost:3142/debian sid/main amd64 cpp-arm-linux-gnueabihf amd64 4:13.2.0-7 [4732 B] Get:39 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:40 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:41 http://localhost:3142/debian sid/main amd64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:42 http://localhost:3142/debian sid/main amd64 libc6-armhf-cross all 2.37-12cross1 [868 kB] Get:43 http://localhost:3142/debian sid/main amd64 libgcc-s1-armhf-cross all 14-20240127-1cross1 [36.9 kB] Get:44 http://localhost:3142/debian sid/main amd64 libgomp1-armhf-cross all 14-20240127-1cross1 [108 kB] Get:45 http://localhost:3142/debian sid/main amd64 libatomic1-armhf-cross all 14-20240127-1cross1 [6768 B] Get:46 http://localhost:3142/debian sid/main amd64 libasan8-armhf-cross all 14-20240127-1cross1 [2567 kB] Get:47 http://localhost:3142/debian sid/main amd64 libstdc++6-armhf-cross all 14-20240127-1cross1 [560 kB] Get:48 http://localhost:3142/debian sid/main amd64 libubsan1-armhf-cross all 14-20240127-1cross1 [1036 kB] Get:49 http://localhost:3142/debian sid/main amd64 libgcc-13-dev-armhf-cross all 13.2.0-12cross1 [783 kB] Get:50 http://localhost:3142/debian sid/main amd64 gcc-13-arm-linux-gnueabihf amd64 13.2.0-12cross1 [17.8 MB] Get:51 http://localhost:3142/debian sid/main amd64 gcc-arm-linux-gnueabihf amd64 4:13.2.0-7 [1452 B] Get:52 http://localhost:3142/debian sid/main amd64 libc6-dev-armhf-cross all 2.37-12cross1 [1265 kB] Get:53 http://localhost:3142/debian sid/main amd64 libstdc++-13-dev-armhf-cross all 13.2.0-12cross1 [2216 kB] Get:54 http://localhost:3142/debian sid/main amd64 g++-13-arm-linux-gnueabihf amd64 13.2.0-12cross1 [10.2 MB] Get:55 http://localhost:3142/debian sid/main amd64 g++-arm-linux-gnueabihf amd64 4:13.2.0-7 [1204 B] Get:56 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:57 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:58 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:59 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:60 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:61 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:62 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:63 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b3 [313 kB] Get:64 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:65 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:66 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:67 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:70 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:71 http://localhost:3142/debian sid/main amd64 crossbuild-essential-armhf all 12.10 [3484 B] Get:72 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.15.3 [88.0 kB] Get:73 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:74 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:75 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:76 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:77 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:78 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:79 http://localhost:3142/debian sid/main amd64 libelf1t64 amd64 0.191-1+b1 [189 kB] Get:80 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:81 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14+b1 [1301 kB] Get:82 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:84 http://localhost:3142/debian sid/main amd64 debhelper all 13.15.3 [901 kB] Get:85 http://localhost:3142/debian sid/main amd64 libfakeroot amd64 1.34-1 [28.9 kB] Get:86 http://localhost:3142/debian sid/main amd64 fakeroot amd64 1.34-1 [74.0 kB] Get:87 http://localhost:3142/debian sid/main armhf gcc-13-base armhf 13.2.0-23 [44.5 kB] Get:88 http://localhost:3142/debian sid/main armhf gcc-14-base armhf 14-20240330-1 [43.2 kB] Get:89 http://localhost:3142/debian sid/main armhf libgcc-s1 armhf 14-20240330-1 [36.8 kB] Get:90 http://localhost:3142/debian sid/main armhf libc6 armhf 2.37-17 [2134 kB] Get:91 http://localhost:3142/debian sid/main armhf libasan8 armhf 14-20240330-1 [2578 kB] Get:92 http://localhost:3142/debian sid/main armhf libatomic1 armhf 14-20240330-1 [7044 B] Get:93 http://localhost:3142/debian sid/main armhf libcrypt1 armhf 1:4.4.36-4 [96.1 kB] Get:94 http://localhost:3142/debian sid/main armhf libcrypt-dev armhf 1:4.4.36-4 [125 kB] Get:95 http://localhost:3142/debian sid/main armhf libc6-dev armhf 2.37-17 [1270 kB] Get:96 http://localhost:3142/debian sid/main armhf libgomp1 armhf 14-20240330-1 [111 kB] Get:97 http://localhost:3142/debian sid/main armhf libstdc++6 armhf 14-20240330-1 [607 kB] Get:98 http://localhost:3142/debian sid/main armhf libubsan1 armhf 14-20240330-1 [1037 kB] Get:99 http://localhost:3142/debian sid/main armhf libgcc-13-dev armhf 13.2.0-23 [781 kB] Get:100 http://localhost:3142/debian sid/main amd64 liblmdb0 amd64 0.9.31-1+b1 [44.8 kB] Get:101 http://localhost:3142/debian sid/main amd64 libmbedcrypto7t64 amd64 2.28.8-1 [284 kB] Get:102 http://localhost:3142/debian sid/main amd64 libmbedx509-1t64 amd64 2.28.8-1 [131 kB] Get:103 http://localhost:3142/debian sid/main amd64 libmbedtls14t64 amd64 2.28.8-1 [167 kB] Get:104 http://localhost:3142/debian sid/main armhf libstdc++-13-dev armhf 13.2.0-23 [2263 kB] Get:105 http://localhost:3142/debian sid/main amd64 ncbi-data all 6.1.20170106+dfsg2-2 [3544 kB] Get:106 http://localhost:3142/debian sid/main amd64 ncbi-blast+ amd64 2.12.0+ds-4+b1 [12.5 MB] Get:107 http://localhost:3142/debian sid/main amd64 ncbi-blast+-legacy all 2.12.0+ds-4 [8956 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 1s (183 MB/s) Selecting previously unselected package liblocale-gettext-perl. 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Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8 to /lib/x86_64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libhistory.so.8.2 to /lib/x86_64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8 to /lib/x86_64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/x86_64-linux-gnu/libreadline.so.8.2 to /lib/x86_64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:amd64 (8.2-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../6-libsqlite3-0_3.45.2-1_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.45.2-1) ... Selecting previously unselected package libpython3.11-stdlib:amd64. Preparing to unpack .../7-libpython3.11-stdlib_3.11.9-1_amd64.deb ... Unpacking libpython3.11-stdlib:amd64 (3.11.9-1) ... Selecting previously unselected package python3.11. 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Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libpython3-stdlib:amd64 (3.11.8-1) ... Setting up python3.11 (3.11.9-1) ... Setting up libstdc++-13-dev-armhf-cross (13.2.0-12cross1) ... Setting up debhelper (13.15.3) ... Setting up python3 (3.11.8-1) ... Setting up gcc-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up ncbi-blast+ (2.12.0+ds-4+b1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up gcc-arm-linux-gnueabihf (4:13.2.0-7) ... Setting up g++-13-arm-linux-gnueabihf (13.2.0-12cross1) ... Setting up ncbi-blast+-legacy (2.12.0+ds-4) ... Setting up g++-arm-linux-gnueabihf (4:13.2.0-7) ... 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Processing triggers for libc-bin (2.37-17) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armhf included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.42-4 dpkg-dev_1.22.6 g++-13_13.2.0-23 gcc-13_13.2.0-23 libc6-dev_2.37-17 libstdc++-13-dev_13.2.0-23 libstdc++-13-dev-armhf-cross_13.2.0-12cross1 libstdc++6_14-20240330-1 libstdc++6-armhf-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: adduser_3.137 apt_2.7.14 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 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libstdc++6-armhf-cross_14-20240127-1cross1 libsub-override-perl_0.10-1 libsystemd0_255.4-1+b1 libtasn1-6_4.19.0-3+b2 libtinfo6_6.4+20240113-1 libtool_2.4.7-7 libtsan2_14-20240330-1 libubsan1_14-20240330-1 libubsan1-armhf-cross_14-20240127-1cross1 libuchardet0_0.0.8-1+b1 libudev1_255.4-1+b1 libunistring5_1.2-1 libuuid1_2.40-5 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b3 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.3+b2 libxxhash0_0.8.2-2+b1 libyaml-perl_1.31-1 libzstd1_1.5.5+dfsg2-2 linux-libc-dev_6.7.9-2 login_1:4.13+dfsg1-4 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.1-1 mawk_1.3.4.20240123-1 media-types_10.1.0 mount_2.40-5 ncbi-blast+_2.12.0+ds-4+b1 ncbi-blast+-legacy_2.12.0+ds-4 ncbi-data_6.1.20170106+dfsg2-2 ncurses-base_6.4+20240113-1 ncurses-bin_6.4+20240113-1 netbase_6.4 passwd_1:4.13+dfsg1-4 patch_2.7.6-7 perl_5.38.2-3.2+b2 perl-base_5.38.2-3.2+b2 perl-modules-5.38_5.38.2-3.2 po-debconf_1.0.21+nmu1 python3_3.11.8-1 python3-minimal_3.11.8-1 python3.11_3.11.9-1 python3.11-minimal_3.11.9-1 readline-common_8.2-4 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.22 sysvinit-utils_3.08-7 tar_1.35+dfsg-3 tzdata_2024a-2 ucf_3.0043+nmu1 usr-is-merged_39 util-linux_2.40-5 xz-utils_5.6.1+really5.4.5-1 zlib1g_1:1.3.dfsg-3.1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: microbiomeutil Binary: microbiomeutil, chimeraslayer, nast-ier, wigeon, microbiomeutil-data Architecture: any all Version: 20101212+dfsg1-6 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille Homepage: https://microbiomeutil.sourceforge.net/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/microbiomeutil Vcs-Git: https://salsa.debian.org/med-team/microbiomeutil.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), cdbfasta, ncbi-blast+-legacy, debhelper Package-List: chimeraslayer deb science optional arch=all microbiomeutil deb science optional arch=all microbiomeutil-data deb science optional arch=all nast-ier deb science optional arch=any wigeon deb science optional arch=all Checksums-Sha1: 514fd1683e42cf11b20fe3b5c78a63a1c67c1b58 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 92e6591838ef8f4ecab720158b74a5c737054dcc 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz Checksums-Sha256: f6e75eb1ccbaca07c862f5e548850bb87c37279678250cd36f5804d673bbd56c 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 65d7aed0b0fa1ce4af79cf0010029b629b14c0f3b8be52290ae71b3918cfeb05 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz Files: c77392b26d155fcfccee367dcea6c53d 1610352 microbiomeutil_20101212+dfsg1.orig.tar.xz 8b8c0d6cd75d39eb4e7900ba3135710c 10708 microbiomeutil_20101212+dfsg1-6.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmYWnmkRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtHaeA//Vc0cpnfWZE79Ex5y3LfFvaEm+0AHX/mp uEjbqDz31loX/GFrX2A+oxnmaipBF8Cr3ND/nkuPG1S4cvREhcXmqGAEIhpEhcbz cMtoCv+4Uinp8CnOnmYyDLqPhZFAUD6gDzNQWurL48P1XR2i4ftQqdPYl+03kZD4 ECq/3Jb2y6M/T6hQpFuJj90yEPt9y6vj8cvFGmfRj5DWN0xIdi9rre/SXelrsoeK /ZBK1GW/+KVznhZS0lEn1OjLsBPEiy84ybx/leccwgCHwId631u6QlNmeNYfMGsV BX+CBDb3/xc/Op2MOz2LoLewwVpzXhMHfWc0gmJrIwU4EvlDJlneiMd6whA19iAN d+TsIYUxDB7i+MNFTb9GYDOxPu71fBk4fkWRksaoMhg4I7ACljwyUIPU4i8lev1M oBBa7BITX26DfWhtr/ld1CLusRzEWM22d7k8RvmL8cec5mb35BEZhHYSgwI5JMHJ lD+fQjtUdGiCYH8b/m1ZlCarxIw3XOtIBKRWgkhcE8SasNFQyctrvIAPjIPIZNAA wr1IuVpvPmkDrnj9LdNAsKDMeLJcZVYx5HEGM00B1eZI89zH2dxzvoJII1q21WOP QeywvksXAOZi19t3UDtTiwN9lXDLsTPOStqrdpvV7V73dCzdWIqQ6Wk5jfaElP7y doLiRNon9Kk= =ITAd -----END PGP SIGNATURE----- gpgv: Signature made Wed Apr 10 14:12:57 2024 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify inline signature for ./microbiomeutil_20101212+dfsg1-6.dsc: no acceptable signature found dpkg-source: info: extracting microbiomeutil in /<> dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1.orig.tar.xz dpkg-source: info: unpacking microbiomeutil_20101212+dfsg1-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying fix_perl_interpreter.patch dpkg-source: info: applying find_relocated_resources.patch dpkg-source: info: applying find_relocated_libraries.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying enable_tests_in_local_dir.patch dpkg-source: info: applying cross.patch dpkg-source: info: applying implicit-function.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armhf DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.BevGKRaXPY/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-0d46ff2f-2153-4789-9792-9913db012055 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarmhf -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package microbiomeutil dpkg-buildpackage: info: source version 20101212+dfsg1-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabihf does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armhf debian/rules clean dh clean debian/rules override_dh_auto_clean make[1]: Entering directory '/<>' dh_auto_clean make -j1 clean make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make clean; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' cd ./sample_data; make clean make[4]: Entering directory '/<>/NAST-iEr/sample_data' rm -f tmp.* make[4]: Leaving directory '/<>/NAST-iEr/sample_data' rm -f NAST-iEr make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' cd ./sample_data; make clean make[4]: Entering directory '/<>/ChimeraSlayer/sample_data' rm -f chims.NAST.* rm -f sample_DB.NAST.cidx rm -f sample_DB.fasta.* rm -f tmp.* rm -f formatdb.log make[4]: Leaving directory '/<>/ChimeraSlayer/sample_data' make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' cd ./sample_data; make clean make[4]: Entering directory '/<>/WigeoN/sample_data' rm -f tmp.* rm -f chims.NAST.* make[4]: Leaving directory '/<>/WigeoN/sample_data' make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' rm -f *fasta.* make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' rm -f RESOURCES/rRNA16S.gold.fasta.n* RESOURCES/*.cidx rm -f formatdb.log make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabihf-pkg-config CXX=arm-linux-gnueabihf-g\+\+ CC=arm-linux-gnueabihf-gcc make[2]: Entering directory '/<>' X=`pwd`; \ for i in NAST-iEr ChimeraSlayer WigeoN RESOURCES; \ do echo '<<<' $i '>>>'; cd $X/$i; make all; done <<< NAST-iEr >>> make[3]: Entering directory '/<>/NAST-iEr' arm-linux-gnueabihf-gcc -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_TIME_BITS=64 -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now NAST-iEr.c -o NAST-iEr make[3]: Leaving directory '/<>/NAST-iEr' <<< ChimeraSlayer >>> make[3]: Entering directory '/<>/ChimeraSlayer' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/ChimeraSlayer' <<< WigeoN >>> make[3]: Entering directory '/<>/WigeoN' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/WigeoN' <<< RESOURCES >>> make[3]: Entering directory '/<>/RESOURCES' make[3]: Nothing to be done for 'all'. make[3]: Leaving directory '/<>/RESOURCES' make[2]: Leaving directory '/<>' #Pre-make indexes for ChimeraSlayer, otherwise it tries to write them #to the non-writeable dir on first run and blows up formatdb -p F -i RESOURCES/rRNA16S.gold.fasta 2>/dev/null Building a new DB, current time: 04/11/2024 10:51:55 New DB name: /<>/RESOURCES/rRNA16S.gold.fasta New DB title: RESOURCES/rRNA16S.gold.fasta Sequence type: Nucleotide Keep MBits: T Maximum file size: 1000000000B Adding sequences from FASTA; added 5181 sequences in 0.160769 seconds. cdbfasta -C RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta 5181 entries from file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta were indexed in file RESOURCES/rRNA16S.gold.NAST_ALIGNED.fasta.cidx make[1]: Leaving directory '/<>' dh: command-omitted: The call to "debian/rules override_dh_auto_test" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a debian/rules override_dh_install make[1]: Entering directory '/<>' dh_install -XMakefile -Xsample_data -XLICENSE -XNAST-iEr.c find debian -name '*.pl' -o -name '*.pm' | xargs sed -i 's|/usr/bin/env perl|/usr/bin/perl|g' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a debian/rules override_dh_installexamples make[1]: Entering directory '/<>' dh_installexamples for mod in ChimeraSlayer NAST-iEr WigeoN ; do \ mkdir -p /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ cp -a ${mod}/sample_data/* /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod} ; \ sed -i -e "s?../${mod}?${mod}?" \ -e "s?^.*\(/util/show_malign_no_gap.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(/run_NAST-iEr.pl\)?/usr/lib/NAST-iEr\1?" \ -e "s?^.*\(ChimeraSlayer.pl\)?/usr/lib/ChimeraSlayer/\1?" \ -e "s?^.*\(/run_WigeoN.pl\)?/usr/lib/WigeoN\1?" \ /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/${mod}/runMe.sh ; \ done sed -i '1i #!/bin/sh' /<>/debian/microbiomeutil-data/usr/share/doc/microbiomeutil-data/examples/WigeoN/runMe.sh make[1]: Leaving directory '/<>' dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a debian/rules override_dh_fixperms make[1]: Entering directory '/<>' dh_fixperms find debian -type f -name '*.pm' -print0 | xargs -0r chmod a-x find debian -type f -name 'genus_counter.pl' -print0 | xargs -0r chmod a+x make[1]: Leaving directory '/<>' dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dpkg-gencontrol: warning: package nast-ier: substitution variable ${perl:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'nast-ier' in '../nast-ier_20101212+dfsg1-6_armhf.deb'. dpkg-deb: building package 'nast-ier-dbgsym' in '../nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb'. dpkg-genbuildinfo --build=any -O../microbiomeutil_20101212+dfsg1-6_armhf.buildinfo dpkg-genchanges --build=any -O../microbiomeutil_20101212+dfsg1-6_armhf.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-04-11T10:51:57Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ microbiomeutil_20101212+dfsg1-6_armhf.changes: ---------------------------------------------- Format: 1.8 Date: Wed, 10 Apr 2024 16:03:07 +0200 Source: microbiomeutil Binary: nast-ier nast-ier-dbgsym Built-For-Profiles: cross nocheck Architecture: armhf Version: 20101212+dfsg1-6 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: nast-ier - NAST-based DNA alignment tool Closes: 1066532 Changes: microbiomeutil (20101212+dfsg1-6) unstable; urgency=medium . * Fix implicit declaration of function isprint Closes: #1066532 * Standards-Version: 4.7.0 (routine-update) * Use secure URI in Homepage field. * Lintian-overrides (see lintian bug #1017966) * Add DEP3 field "Forwarded: no (upstream is dead)" Checksums-Sha1: 30a60df098027bd8ec33e6880fa0a6b098760438 5945 microbiomeutil_20101212+dfsg1-6_armhf.buildinfo d13eed2d1ec51523cf14d655673068c117ed558c 14176 nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb cd0d83f48329a417d650fbaf92d907c943ccbcb1 19412 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha256: 05b4cc83bd83cc81b147f7c3aecd24155753805da236d063182f546424ee5cdf 5945 microbiomeutil_20101212+dfsg1-6_armhf.buildinfo 563b40a86f47f56c0341112d1689bfdd77e8c60b8e816046c3daeb5429796a0e 14176 nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb 142ef84e9e0e665b53adbfcd126323372bbdcc29c9a9b471c95037bdbfcebed5 19412 nast-ier_20101212+dfsg1-6_armhf.deb Files: f110b9437ec506447fa027f890e63fde 5945 science optional microbiomeutil_20101212+dfsg1-6_armhf.buildinfo f487b9e47f32579cc76a883f8529cea7 14176 debug optional nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb 62d3efa499ab3f8044ddf9715cd259f0 19412 science optional nast-ier_20101212+dfsg1-6_armhf.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: microbiomeutil Binary: nast-ier nast-ier-dbgsym Architecture: armhf Version: 20101212+dfsg1-6 Checksums-Md5: f487b9e47f32579cc76a883f8529cea7 14176 nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb 62d3efa499ab3f8044ddf9715cd259f0 19412 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha1: d13eed2d1ec51523cf14d655673068c117ed558c 14176 nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb cd0d83f48329a417d650fbaf92d907c943ccbcb1 19412 nast-ier_20101212+dfsg1-6_armhf.deb Checksums-Sha256: 563b40a86f47f56c0341112d1689bfdd77e8c60b8e816046c3daeb5429796a0e 14176 nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb 142ef84e9e0e665b53adbfcd126323372bbdcc29c9a9b471c95037bdbfcebed5 19412 nast-ier_20101212+dfsg1-6_armhf.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 11 Apr 2024 10:51:57 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-4), binutils-common (= 2.42-4), binutils-x86-64-linux-gnu (= 2.42-4), bsdextrautils (= 2.40-5), bsdutils (= 1:2.40-5), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), cdbfasta (= 1.00+git20230710.da8f5ba+dfsg-1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-23), cpp-13-x86-64-linux-gnu (= 13.2.0-23), cpp-x86-64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.15.3), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-23), g++-13-x86-64-linux-gnu (= 13.2.0-23), g++-x86-64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-23), gcc-13-base (= 13.2.0-23), gcc-13-x86-64-linux-gnu (= 13.2.0-23), gcc-14-base (= 14-20240330-1), gcc-x86-64-linux-gnu (= 4:13.2.0-7), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libasan8 (= 14-20240330-1), libatomic1 (= 14-20240330-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-4), libblkid1 (= 2.40-5), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-17), libc-dev-bin (= 2.37-17), libc6 (= 2.37-17), libc6-dev (= 2.37-17), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240330-1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-4), libctf0 (= 2.42-4), libdb5.3t64 (= 5.3.28+dfsg2-6), libdebconfclient0 (= 0.271+b3), libdebhelper-perl (= 13.15.3), libdpkg-perl (= 1.22.6), libelf1t64 (= 0.191-1+b1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-13-dev (= 13.2.0-23), libgcc-s1 (= 14-20240330-1), libgclib3 (= 0.12.7+ds-5), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1+b1), libgdbm6t64 (= 1.23-5.1+b1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgomp1 (= 14-20240330-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-4), libhwasan0 (= 14-20240330-1), libicu72 (= 72.1-4+b1), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240330-1), libjansson4 (= 2.14-2+b2), liblmdb0 (= 0.9.31-1+b1), liblsan0 (= 14-20240330-1), liblz4-1 (= 1.9.4-2), liblzma5 (= 5.6.1+really5.4.5-1), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmbedcrypto7t64 (= 2.28.8-1), libmbedtls14t64 (= 2.28.8-1), libmbedx509-1t64 (= 2.28.8-1), libmd0 (= 1.1.0-2), libmount1 (= 2.40-5), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.4+20240113-1), libpam-modules (= 1.5.3-7), libpam-modules-bin (= 1.5.3-7), libpam-runtime (= 1.5.3-7), libpam0t64 (= 1.5.3-4), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2+b2), libpipeline1 (= 1.5.7-2), libpython3-stdlib (= 3.11.8-1), libpython3.11-minimal (= 3.11.9-1), libpython3.11-stdlib (= 3.11.9-1), libquadmath0 (= 14-20240330-1), libreadline8t64 (= 8.2-4), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b2), libsframe1 (= 2.42-4), libsmartcols1 (= 2.40-5), libsqlite3-0 (= 3.45.2-1), libssl3t64 (= 3.2.1-3), libstdc++-13-dev (= 13.2.0-23), libstdc++6 (= 14-20240330-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240330-1), libubsan1 (= 14-20240330-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.2-1), libuuid1 (= 2.40-5), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.1-1), mawk (= 1.3.4.20240123-1), media-types (= 10.1.0), ncbi-blast+ (= 2.12.0+ds-4+b1), ncbi-blast+-legacy (= 2.12.0+ds-4), ncbi-data (= 6.1.20170106+dfsg2-2), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), netbase (= 6.4), patch (= 2.7.6-7), perl (= 5.38.2-3.2+b2), perl-base (= 5.38.2-3.2+b2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), python3 (= 3.11.8-1), python3-minimal (= 3.11.8-1), python3.11 (= 3.11.9-1), python3.11-minimal (= 3.11.9-1), readline-common (= 8.2-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tar (= 1.35+dfsg-3), tzdata (= 2024a-2), usr-is-merged (= 39), util-linux (= 2.40-5), xz-utils (= 5.6.1+really5.4.5-1), zlib1g (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1712757787" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ nast-ier-dbgsym_20101212+dfsg1-6_armhf.deb ------------------------------------------ new Debian package, version 2.0. size 14176 bytes: control archive=552 bytes. 397 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: nast-ier-dbgsym Source: microbiomeutil Version: 20101212+dfsg1-6 Auto-Built-Package: debug-symbols Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 28 Depends: nast-ier (= 20101212+dfsg1-6) Section: debug Priority: optional Description: debug symbols for nast-ier Build-Ids: 3b96236d22e2ab466dbff5112cb1eb5a90ad668b drwxr-xr-x root/root 0 2024-04-10 14:03 ./ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/debug/.build-id/3b/ -rw-r--r-- root/root 17640 2024-04-10 14:03 ./usr/lib/debug/.build-id/3b/96236d22e2ab466dbff5112cb1eb5a90ad668b.debug drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-04-10 14:03 ./usr/share/doc/nast-ier-dbgsym -> nast-ier nast-ier_20101212+dfsg1-6_armhf.deb ----------------------------------- new Debian package, version 2.0. size 19412 bytes: control archive=1388 bytes. 744 bytes, 20 lines control 1533 bytes, 20 lines md5sums Package: nast-ier Source: microbiomeutil Version: 20101212+dfsg1-6 Architecture: armhf Maintainer: Debian Med Packaging Team Installed-Size: 90 Depends: libc6 (>= 2.34), microbiomeutil-data, cdbfasta Recommends: ncbi-blast+ Section: science Priority: optional Homepage: https://microbiomeutil.sourceforge.net/ Description: NAST-based DNA alignment tool The NAST-iEr alignment utility aligns a single raw nucleotide sequence against one or more NAST formatted sequences. . The alignment algorithm involves global dynamic programming profile alignment to fixed (NAST-formatted) multiply aligned template sequences without any end-gap penalty. . NAST-iEr is part of the microbiomeutil suite. drwxr-xr-x root/root 0 2024-04-10 14:03 ./ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/bin/ lrwxrwxrwx root/root 0 2024-04-10 14:03 ./usr/bin/nast-ier -> ../lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/ -rwxr-xr-x root/root 9648 2024-04-10 14:03 ./usr/lib/NAST-iEr/NAST-iEr drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/ -rw-r--r-- root/root 2453 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/CdbTools.pm -rw-r--r-- root/root 2980 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/Fasta_reader.pm -rw-r--r-- root/root 10294 2024-04-10 14:03 ./usr/lib/NAST-iEr/PerlLib/Nuc_translator.pm -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/lib/NAST-iEr/README drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/ -rwxr-xr-x root/root 615 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/compare_DBs.pl -rwxr-xr-x root/root 624 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/iteratively_realign_db_selfsearch.pl -rwxr-xr-x root/root 411 2024-04-10 14:03 ./usr/lib/NAST-iEr/iterative_refinement/quant_differences.pl -rwxr-xr-x root/root 5375 2024-04-10 14:03 ./usr/lib/NAST-iEr/run_NAST-iEr.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/ -rwxr-xr-x root/root 1425 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/apply_NAST_MASK.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/masks/ -rw-r--r-- root/root 7735 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/eco.prokMSA -rw-r--r-- root/root 7821 2010-12-12 13:36 ./usr/lib/NAST-iEr/util/masks/lanemask.NAST -rwxr-xr-x root/root 1179 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/mfasta_remove_allGapCols.pl -rwxr-xr-x root/root 503 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/mfasta_remove_gaps.pl -rwxr-xr-x root/root 2748 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/show_malign_no_gap.pl -rwxr-xr-x root/root 2936 2024-04-10 14:03 ./usr/lib/NAST-iEr/util/show_malign_no_gap_no_identical_cols.pl drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/doc/nast-ier/ -rw-r--r-- root/root 2059 2010-12-12 13:36 ./usr/share/doc/nast-ier/README -rw-r--r-- root/root 940 2024-04-10 14:03 ./usr/share/doc/nast-ier/changelog.Debian.gz -rw-r--r-- root/root 1898 2024-04-10 14:03 ./usr/share/doc/nast-ier/copyright lrwxrwxrwx root/root 0 2024-04-10 14:03 ./usr/share/doc/nast-ier/examples -> ../microbiomeutil-data/examples/NAST-iEr drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/man/ drwxr-xr-x root/root 0 2024-04-10 14:03 ./usr/share/man/man1/ -rw-r--r-- root/root 672 2024-04-10 14:03 ./usr/share/man/man1/nast-ier.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1337 B] Get:5 copy:/<>/apt_archive ./ Packages [1416 B] Fetched 3368 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following package was automatically installed and is no longer required: mount Use 'apt autoremove' to remove it. The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop openssl patchutils perl-openssl-defaults plzip sbuild-build-depends-lintian-dummy:armhf t1utils unzip 0 upgraded, 125 newly installed, 0 to remove and 0 not upgraded. Need to get 12.5 MB of archives. After this operation, 49.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://localhost:3142/debian sid/main amd64 openssl amd64 3.2.1-3 [1360 kB] Get:3 http://localhost:3142/debian sid/main amd64 ca-certificates all 20240203 [158 kB] Get:4 http://localhost:3142/debian sid/main amd64 diffstat amd64 1.66-1 [34.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 libassuan0 amd64 2.5.6-1 [49.9 kB] Get:6 http://localhost:3142/debian sid/main amd64 gpgconf amd64 2.2.40-3 [565 kB] Get:7 http://localhost:3142/debian sid/main amd64 gpg amd64 2.2.40-3 [950 kB] Get:8 http://localhost:3142/debian sid/main amd64 iso-codes all 4.16.0-1 [2936 kB] Get:9 http://localhost:3142/debian sid/main amd64 libaliased-perl all 0.34-3 [13.5 kB] Get:10 http://localhost:3142/debian sid/main amd64 libapt-pkg-perl amd64 0.1.40+b5 [66.9 kB] Get:11 http://localhost:3142/debian sid/main amd64 libb-hooks-op-check-perl amd64 0.22-3+b1 [10.6 kB] Get:12 http://localhost:3142/debian sid/main amd64 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libencode-locale-perl all 1.05-3 [12.9 kB] Get:54 http://localhost:3142/debian sid/main amd64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libnumber-compare-perl all 0.03-3 [6332 B] Get:57 http://localhost:3142/debian sid/main amd64 libtext-glob-perl all 0.11-3 [7676 B] Get:58 http://localhost:3142/debian sid/main amd64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:59 http://localhost:3142/debian sid/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:60 http://localhost:3142/debian sid/main amd64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:61 http://localhost:3142/debian sid/main amd64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:62 http://localhost:3142/debian sid/main amd64 libfont-ttf-perl all 1.06-2 [318 kB] Get:63 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:64 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:65 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:66 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:71 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b2 [6724 B] Get:72 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.94-1+b1 [339 kB] Get:73 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:74 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.23-1 [23.9 kB] Get:75 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:76 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:77 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.77-1 [183 kB] Get:78 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:79 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:80 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:81 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:82 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:83 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:84 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.14-1 [38.5 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2+b1 [54.8 kB] Get:88 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2+b1 [35.6 kB] Get:89 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:90 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:91 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:93 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:95 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b5 [143 kB] Get:96 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:97 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3+b2 [11.2 kB] Get:98 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.27-1+b2 [12.5 kB] Get:99 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:100 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:101 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b3 [17.5 kB] Get:102 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1+b2 [11.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.636-1+b2 [42.2 kB] Get:104 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:105 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.004+ds-1+b2 [99.3 kB] Get:106 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.004+ds-1+b2 [102 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:108 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.39-1+b2 [57.6 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.29-2 [26.9 kB] Get:110 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b3 [24.7 kB] Get:111 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b3 [8700 B] Get:112 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1+b2 [13.0 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-2 [173 kB] Get:114 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b3 [72.8 kB] Get:116 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2+b2 [20.2 kB] Get:117 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:118 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:119 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.89+ds-1+b1 [35.0 kB] Get:120 http://localhost:3142/debian sid/main amd64 plzip amd64 1.11-1 [63.9 kB] Get:121 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:122 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:123 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:124 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:125 http://localhost:3142/debian sid/main amd64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 12.5 MB in 0s (77.8 MB/s) Selecting previously unselected package openssl. (Reading database ... 18825 files and directories currently installed.) Preparing to unpack .../000-openssl_3.2.1-3_amd64.deb ... Unpacking openssl (3.2.1-3) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../001-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.66-1_amd64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../003-libassuan0_2.5.6-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.6-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.40-3_amd64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package gpg. Preparing to unpack .../005-gpg_2.2.40-3_amd64.deb ... Unpacking gpg (2.2.40-3) ... Selecting previously unselected package iso-codes. 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Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1+b2) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:amd64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.83-2+b3) ... 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Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up gpg (2.2.40-3) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:amd64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.82-1) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.64-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:armhf (0.invalid.0) ... Processing triggers for libc-bin (2.37-17) ... Processing triggers for man-db (2.12.1-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 53420 Build-Time: 3 Distribution: unstable Foreign Architectures: armhf Host Architecture: armhf Install-Time: 15 Job: microbiomeutil_20101212+dfsg1-6 Lintian: pass Machine Architecture: amd64 Package: microbiomeutil Package-Time: 29 Source-Version: 20101212+dfsg1-6 Space: 53420 Status: successful Version: 20101212+dfsg1-6 -------------------------------------------------------------------------------- Finished at 2024-04-11T10:51:57Z Build needed 00:00:29, 53420k disk space