sbuild (Debian sbuild) 0.81.2+deb11u1 (31 August 2022) on debian-ci-siliconvalley +==============================================================================+ | minimap 0.2-7 (arm64) Sun, 30 Apr 2023 03:35:58 +0000 | +==============================================================================+ Package: minimap Version: 0.2-7 Source Version: 0.2-7 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-62789404-aaa4-4cbb-b9cf-6840f47ea651' with '<>' I: NOTICE: Log filtering will replace 'build/minimap-U6Xvz5/resolver-IIFHGn' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [188 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2023-04-30-0203.34-F-2023-04-30-0203.34.pdiff [540 B] Get:4 http://localhost:3142/debian sid/main Sources T-2023-04-30-0203.34-F-2023-04-30-0203.34.pdiff [540 B] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-04-30-0203.34-F-2023-04-30-0203.34.pdiff [1111 B] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2023-04-30-0203.34-F-2023-04-30-0203.34.pdiff [1111 B] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9297 kB] Fetched 9613 kB in 2s (4705 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'minimap' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/minimap.git Please use: git clone https://salsa.debian.org/med-team/minimap.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 112 kB of source archives. Get:1 http://localhost:3142/debian sid/main minimap 0.2-7 (dsc) [2082 B] Get:2 http://localhost:3142/debian sid/main minimap 0.2-7 (tar) [31.2 kB] Get:3 http://localhost:3142/debian sid/main minimap 0.2-7 (diff) [78.7 kB] Fetched 112 kB in 0s (0 B/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/minimap-U6Xvz5/minimap-0.2' with '<>' I: NOTICE: Log filtering will replace 'build/minimap-U6Xvz5' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [415 B] Get:5 copy:/<>/apt_archive ./ Packages [505 B] Fetched 1877 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-12-locales cpp-12-doc cpp-doc dh-make binutils-multiarch gcc-12-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-12-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 d-shlibs debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-12-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-12-aarch64-linux-gnu gcc-12-aarch64-linux-gnu-base gcc-12-base:arm64 gcc-12-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-12-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-12-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:arm64 linux-libc-dev-arm64-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 105 newly installed, 0 to remove and 0 not upgraded. Need to get 95.0 MB of archives. After this operation, 397 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [932 B] Get:2 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-5 [15.4 kB] Get:3 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.17+nmu1 [19.0 kB] Get:4 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.44-3 [305 kB] Get:5 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.44-3 [104 kB] Get:6 http://localhost:3142/debian sid/main amd64 file amd64 1:5.44-3 [42.5 kB] Get:7 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-12 [160 kB] Get:8 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:9 http://localhost:3142/debian sid/main amd64 groff-base amd64 1.22.4-10 [916 kB] Get:10 http://localhost:3142/debian sid/main amd64 bsdextrautils amd64 2.38.1-5+b1 [86.6 kB] Get:11 http://localhost:3142/debian sid/main amd64 libpipeline1 amd64 1.5.7-1 [38.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 man-db amd64 2.11.2-2 [1386 kB] Get:13 http://localhost:3142/debian sid/main amd64 ucf all 3.0043+nmu1 [55.2 kB] Get:14 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-3 [287 kB] Get:15 http://localhost:3142/debian sid/main amd64 autoconf all 2.71-3 [332 kB] Get:16 http://localhost:3142/debian sid/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:17 http://localhost:3142/debian sid/main amd64 automake all 1:1.16.5-1.3 [823 kB] Get:18 http://localhost:3142/debian sid/main amd64 autopoint all 0.21-12 [495 kB] Get:19 http://localhost:3142/debian sid/main amd64 binutils-aarch64-linux-gnu amd64 2.40-2 [3353 kB] Get:20 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu-base amd64 12.2.0-14cross1 [37.7 kB] Get:21 http://localhost:3142/debian sid/main amd64 cpp-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [9150 kB] Get:22 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:12.2.0-3 [3980 B] Get:23 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:24 http://localhost:3142/debian sid/main amd64 gcc-12-cross-base all 12.2.0-14cross1 [33.2 kB] Get:25 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.36-8cross1 [1005 kB] Get:26 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 12.2.0-14cross1 [34.8 kB] Get:27 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 12.2.0-14cross1 [102 kB] Get:28 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 12.2.0-14cross1 [23.5 kB] Get:29 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 12.2.0-14cross1 [9292 B] Get:30 http://localhost:3142/debian sid/main amd64 libasan8-arm64-cross all 12.2.0-14cross1 [2097 kB] Get:31 http://localhost:3142/debian sid/main amd64 liblsan0-arm64-cross all 12.2.0-14cross1 [926 kB] Get:32 http://localhost:3142/debian sid/main amd64 libtsan2-arm64-cross all 12.2.0-14cross1 [2179 kB] Get:33 http://localhost:3142/debian sid/main amd64 libstdc++6-arm64-cross all 12.2.0-14cross1 [514 kB] Get:34 http://localhost:3142/debian sid/main amd64 libubsan1-arm64-cross all 12.2.0-14cross1 [861 kB] Get:35 http://localhost:3142/debian sid/main amd64 libhwasan0-arm64-cross all 12.2.0-14cross1 [998 kB] Get:36 http://localhost:3142/debian sid/main amd64 libgcc-12-dev-arm64-cross all 12.2.0-14cross1 [961 kB] Get:37 http://localhost:3142/debian sid/main amd64 gcc-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [18.0 MB] Get:38 http://localhost:3142/debian sid/main amd64 gcc-aarch64-linux-gnu amd64 4:12.2.0-3 [1468 B] Get:39 http://localhost:3142/debian sid/main amd64 linux-libc-dev-arm64-cross all 6.1.4-1cross1 [1815 kB] Get:40 http://localhost:3142/debian sid/main amd64 libc6-dev-arm64-cross all 2.36-8cross1 [1424 kB] Get:41 http://localhost:3142/debian sid/main amd64 libstdc++-12-dev-arm64-cross all 12.2.0-14cross1 [1975 kB] Get:42 http://localhost:3142/debian sid/main amd64 g++-12-aarch64-linux-gnu amd64 12.2.0-14cross1 [10.1 MB] Get:43 http://localhost:3142/debian sid/main amd64 g++-aarch64-linux-gnu amd64 4:12.2.0-3 [1176 B] Get:44 http://localhost:3142/debian sid/main amd64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:45 http://localhost:3142/debian sid/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian sid/main amd64 libicu72 amd64 72.1-3 [9376 kB] Get:47 http://localhost:3142/debian sid/main amd64 libxml2 amd64 2.9.14+dfsg-1.2 [687 kB] Get:48 http://localhost:3142/debian sid/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian sid/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian sid/main amd64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:51 http://localhost:3142/debian sid/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-1+b1 [322 kB] Get:52 http://localhost:3142/debian sid/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian sid/main amd64 libyaml-perl all 1.30-2 [63.4 kB] Get:54 http://localhost:3142/debian sid/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian sid/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian sid/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian sid/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian sid/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian sid/main amd64 crossbuild-essential-arm64 all 12.9 [6708 B] Get:60 http://localhost:3142/debian sid/main amd64 d-shlibs all 0.104 [18.6 kB] Get:61 http://localhost:3142/debian sid/main amd64 libdebhelper-perl all 13.11.4 [81.2 kB] Get:62 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-5 [517 kB] Get:63 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:64 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:65 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.09-4 [9304 B] Get:66 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:67 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:68 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.188-2.1 [174 kB] Get:69 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:70 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-12 [1300 kB] Get:71 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:72 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:73 http://localhost:3142/debian sid/main amd64 debhelper all 13.11.4 [942 kB] Get:74 http://localhost:3142/debian sid/main arm64 gcc-11-base arm64 11.3.0-12 [38.4 kB] Get:75 http://localhost:3142/debian sid/main arm64 gcc-12-base arm64 12.2.0-14 [37.5 kB] Get:76 http://localhost:3142/debian sid/main arm64 libgcc-s1 arm64 12.2.0-14 [34.8 kB] Get:77 http://localhost:3142/debian sid/main arm64 libc6 arm64 2.36-9 [2313 kB] Get:78 http://localhost:3142/debian sid/main arm64 libasan6 arm64 11.3.0-12 [1952 kB] Get:79 http://localhost:3142/debian sid/main arm64 libatomic1 arm64 12.2.0-14 [9536 B] Get:80 http://localhost:3142/debian sid/main arm64 linux-libc-dev arm64 6.1.25-1 [1749 kB] Get:81 http://localhost:3142/debian sid/main arm64 libcrypt1 arm64 1:4.4.33-2 [90.0 kB] Get:82 http://localhost:3142/debian sid/main arm64 libcrypt-dev arm64 1:4.4.33-2 [121 kB] Get:83 http://localhost:3142/debian sid/main arm64 libcom-err2 arm64 1.47.0-2 [19.6 kB] Get:84 http://localhost:3142/debian sid/main arm64 libkrb5support0 arm64 1.20.1-1+b1 [31.7 kB] Get:85 http://localhost:3142/debian sid/main arm64 libk5crypto3 arm64 1.20.1-1+b1 [79.2 kB] Get:86 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2 [8844 B] Get:87 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.0.8-1 [1801 kB] Get:88 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-1+b1 [313 kB] Get:89 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-1+b1 [123 kB] Get:90 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.3+ds-1 [80.9 kB] Get:91 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-2 [36.9 kB] Get:92 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.3+ds-1 [194 kB] Get:93 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-2 [66.1 kB] Get:94 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.36-9 [1428 kB] Get:95 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 12.2.0-14 [104 kB] Get:96 http://localhost:3142/debian sid/main arm64 libitm1 arm64 12.2.0-14 [23.9 kB] Get:97 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 12.2.0-14 [926 kB] Get:98 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.3.0-12 [1957 kB] Get:99 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 12.2.0-14 [557 kB] Get:100 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 12.2.0-14 [862 kB] Get:101 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 12.2.0-14 [998 kB] Get:102 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.3.0-12 [929 kB] Get:103 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.3.0-12 [1927 kB] Get:104 http://localhost:3142/debian sid/main arm64 zlib1g arm64 1:1.2.13.dfsg-1 [82.7 kB] Get:105 http://localhost:3142/debian sid/main arm64 zlib1g-dev arm64 1:1.2.13.dfsg-1 [913 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 95.0 MB in 0s (196 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 15279 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-5_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-5) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../001-sensible-utils_0.0.17+nmu1_all.deb ... Unpacking sensible-utils (0.0.17+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../002-libmagic-mgc_1%3a5.44-3_amd64.deb ... Unpacking libmagic-mgc (1:5.44-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../003-libmagic1_1%3a5.44-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.44-3) ... Selecting previously unselected package file. Preparing to unpack .../004-file_1%3a5.44-3_amd64.deb ... Unpacking file (1:5.44-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../005-gettext-base_0.21-12_amd64.deb ... Unpacking gettext-base (0.21-12) ... 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Setting up gcc-12-aarch64-linux-gnu-base:amd64 (12.2.0-14cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.11.4) ... Setting up libmagic1:amd64 (1:5.44-3) ... Setting up linux-libc-dev:arm64 (6.1.25-1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-12) ... Setting up m4 (1.4.19-3) ... Setting up binutils-aarch64-linux-gnu (2.40-2) ... Setting up file (1:5.44-3) ... Setting up libyaml-perl (1.30-2) ... Setting up gcc-12-base:arm64 (12.2.0-14) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libc6-arm64-cross (2.36-8cross1) ... Setting up autopoint (0.21-12) ... Setting up d-shlibs (0.104) ... Setting up libitm1-arm64-cross (12.2.0-14cross1) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-arm64-cross (6.1.4-1cross1) ... Setting up sensible-utils (0.0.17+nmu1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libsub-override-perl (0.09-4) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.188-2.1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.2) ... Setting up liblocale-gettext-perl (1.07-5) ... Setting up libgcc-s1-arm64-cross (12.2.0-14cross1) ... Setting up libatomic1-arm64-cross (12.2.0-14cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (12.2.0-14cross1) ... Setting up libgomp1-arm64-cross (12.2.0-14cross1) ... Setting up gettext (0.21-12) ... Setting up cpp-12-aarch64-linux-gnu (12.2.0-14cross1) ... Setting up libtool (2.4.7-5) ... Setting up libhwasan0-arm64-cross (12.2.0-14cross1) ... Setting up libc6-dev-arm64-cross (2.36-8cross1) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (12.2.0-14cross1) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:12.2.0-3) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.22.4-10) ... Setting up libasan8-arm64-cross (12.2.0-14cross1) ... Setting up libtsan2-arm64-cross (12.2.0-14cross1) ... Setting up libubsan1-arm64-cross (12.2.0-14cross1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-12-dev-arm64-cross (12.2.0-14cross1) ... Setting up gcc-12-aarch64-linux-gnu (12.2.0-14cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-aarch64-linux-gnu (4:12.2.0-3) ... Setting up debhelper (13.11.4) ... Setting up libstdc++-12-dev-arm64-cross (12.2.0-14cross1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-12-aarch64-linux-gnu (12.2.0-14cross1) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:12.2.0-3) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.9) ... Setting up libgcc-s1:arm64 (12.2.0-14) ... Setting up libc6:arm64 (2.36-9) ... Setting up libhwasan0:arm64 (12.2.0-14) ... Setting up libstdc++6:arm64 (12.2.0-14) ... Setting up liblsan0:arm64 (12.2.0-14) ... Setting up libitm1:arm64 (12.2.0-14) ... Setting up libtsan0:arm64 (11.3.0-12) ... Setting up libkeyutils1:arm64 (1.6.3-2) ... Setting up libssl3:arm64 (3.0.8-1) ... Setting up zlib1g:arm64 (1:1.2.13.dfsg-1) ... Setting up libcrypt1:arm64 (1:4.4.33-2) ... Setting up libcom-err2:arm64 (1.47.0-2) ... Setting up libgomp1:arm64 (12.2.0-14) ... Setting up libasan6:arm64 (11.3.0-12) ... Setting up libkrb5support0:arm64 (1.20.1-1+b1) ... Setting up libatomic1:arm64 (12.2.0-14) ... Setting up libk5crypto3:arm64 (1.20.1-1+b1) ... Setting up libubsan1:arm64 (12.2.0-14) ... Setting up libgcc-11-dev:arm64 (11.3.0-12) ... Setting up libcrypt-dev:arm64 (1:4.4.33-2) ... Setting up libkrb5-3:arm64 (1.20.1-1+b1) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-1+b1) ... Setting up libtirpc3:arm64 (1.3.3+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.3+ds-1) ... Setting up libnsl2:arm64 (1.3.0-2) ... Setting up libnsl-dev:arm64 (1.3.0-2) ... Setting up libc6-dev:arm64 (2.36-9) ... Setting up libstdc++-11-dev:arm64 (11.3.0-12) ... Setting up zlib1g-dev:arm64 (1:1.2.13.dfsg-1) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.10.0-21-amd64 #1 SMP Debian 5.10.162-1 (2023-01-21) amd64 (x86_64) Toolchain package versions: binutils_2.40-2 dpkg-dev_1.21.21 g++-11_11.3.0-12 g++-12_12.2.0-14 gcc-11_11.3.0-12 gcc-12_12.2.0-14 libc6-dev_2.36-9 libstdc++-11-dev_11.3.0-12 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-arm64-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-arm64-cross_12.2.0-14cross1 linux-libc-dev_6.1.25-1 Package versions: adduser_3.132 apt_2.6.0 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-12 autotools-dev_20220109.1 base-files_12.4 base-passwd_3.6.1 bash_5.2.15-2+b2 binutils_2.40-2 binutils-aarch64-linux-gnu_2.40-2 binutils-common_2.40-2 binutils-x86-64-linux-gnu_2.40-2 bsdextrautils_2.38.1-5+b1 bsdutils_1:2.38.1-5+b1 build-essential_12.9 bzip2_1.0.8-5+b1 coreutils_9.1-1 cpp_4:12.2.0-3 cpp-11_11.3.0-12 cpp-12_12.2.0-14 cpp-12-aarch64-linux-gnu_12.2.0-14cross1 cpp-aarch64-linux-gnu_4:12.2.0-3 cross-config_2.6.20 crossbuild-essential-arm64_12.9 d-shlibs_0.104 dash_0.5.12-2 debconf_1.5.82 debhelper_13.11.4 debian-archive-keyring_2023.3 debianutils_5.7-0.4 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.8-4 dpkg_1.21.21 dpkg-cross_2.6.20 dpkg-dev_1.21.21 dwz_0.15-1 e2fsprogs_1.47.0-2 fakeroot_1.31-1.2 file_1:5.44-3 findutils_4.9.0-4 g++_4:12.2.0-3 g++-11_11.3.0-12 g++-12_12.2.0-14 g++-12-aarch64-linux-gnu_12.2.0-14cross1 g++-aarch64-linux-gnu_4:12.2.0-3 gcc_4:12.2.0-3 gcc-11_11.3.0-12 gcc-11-base_11.3.0-12 gcc-12_12.2.0-14 gcc-12-aarch64-linux-gnu_12.2.0-14cross1 gcc-12-aarch64-linux-gnu-base_12.2.0-14cross1 gcc-12-base_12.2.0-14 gcc-12-cross-base_12.2.0-14cross1 gcc-9-base_9.5.0-3 gcc-aarch64-linux-gnu_4:12.2.0-3 gettext_0.21-12 gettext-base_0.21-12 gpgv_2.2.40-1.1 grep_3.8-5 groff-base_1.22.4-10 gzip_1.12-1 hostname_3.23+nmu1 init-system-helpers_1.65.2 intltool-debian_0.35.0+20060710.6 libacl1_2.3.1-3 libapt-pkg6.0_2.6.0 libarchive-zip-perl_1.68-1 libasan6_11.3.0-12 libasan8_12.2.0-14 libasan8-arm64-cross_12.2.0-14cross1 libatomic1_12.2.0-14 libatomic1-arm64-cross_12.2.0-14cross1 libattr1_1:2.5.1-4 libaudit-common_1:3.0.9-1 libaudit1_1:3.0.9-1 libbinutils_2.40-2 libblkid1_2.38.1-5+b1 libbz2-1.0_1.0.8-5+b1 libc-bin_2.36-9 libc-dev-bin_2.36-9 libc6_2.36-9 libc6-arm64-cross_2.36-8cross1 libc6-dev_2.36-9 libc6-dev-arm64-cross_2.36-8cross1 libcap-ng0_0.8.3-1+b3 libcap2_1:2.66-3 libcc1-0_12.2.0-14 libcom-err2_1.47.0-2 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-2 libcrypt-dev_1:4.4.33-2 libcrypt1_1:4.4.33-2 libctf-nobfd0_2.40-2 libctf0_2.40-2 libdb5.3_5.3.28+dfsg2-1 libdebconfclient0_0.269 libdebhelper-perl_13.11.4 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.21.21 libelf1_0.188-2.1 libext2fs2_1.47.0-2 libfakeroot_1.31-1.2 libffi8_3.4.4-1 libfile-find-rule-perl_0.34-3 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.13.1-1 libfile-which-perl_1.27-2 libgcc-11-dev_11.3.0-12 libgcc-12-dev_12.2.0-14 libgcc-12-dev-arm64-cross_12.2.0-14cross1 libgcc-s1_12.2.0-14 libgcc-s1-arm64-cross_12.2.0-14cross1 libgcrypt20_1.10.1-3 libgdbm-compat4_1.23-3 libgdbm6_1.23-3 libgmp10_2:6.2.1+dfsg1-1.1 libgnutls30_3.7.9-2 libgomp1_12.2.0-14 libgomp1-arm64-cross_12.2.0-14cross1 libgpg-error0_1.46-1 libgprofng0_2.40-2 libgssapi-krb5-2_1.20.1-1+b1 libhogweed6_3.8.1-2 libhwasan0_12.2.0-14 libhwasan0-arm64-cross_12.2.0-14cross1 libicu72_72.1-3 libidn2-0_2.3.3-1+b1 libio-string-perl_1.08-4 libisl23_0.25-1 libitm1_12.2.0-14 libitm1-arm64-cross_12.2.0-14cross1 libjansson4_2.14-2 libk5crypto3_1.20.1-1+b1 libkeyutils1_1.6.3-2 libkrb5-3_1.20.1-1+b1 libkrb5support0_1.20.1-1+b1 liblocale-gettext-perl_1.07-5 liblsan0_12.2.0-14 liblsan0-arm64-cross_12.2.0-14cross1 liblz4-1_1.9.4-1 liblzma5_5.4.1-0.2 libmagic-mgc_1:5.44-3 libmagic1_1:5.44-3 libmd0_1.0.4-2 libmount1_2.38.1-5+b1 libmpc3_1.3.1-1 libmpfr6_4.2.0-1 libnettle8_3.8.1-2 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libnumber-compare-perl_0.03-3 libp11-kit0_0.24.1-2 libpam-modules_1.5.2-6 libpam-modules-bin_1.5.2-6 libpam-runtime_1.5.2-6 libpam0g_1.5.2-6 libpcre2-8-0_10.42-1 libpcre3_2:8.39-15 libperl5.34_5.34.0-5 libperl5.36_5.36.0-7 libpipeline1_1.5.7-1 libquadmath0_12.2.0-14 libseccomp2_2.5.4-1+b3 libselinux1_3.4-1+b5 libsemanage-common_3.4-1 libsemanage2_3.4-1+b5 libsepol2_3.4-2 libsmartcols1_2.38.1-5+b1 libss2_1.47.0-2 libssl3_3.0.8-1 libstdc++-11-dev_11.3.0-12 libstdc++-12-dev_12.2.0-14 libstdc++-12-dev-arm64-cross_12.2.0-14cross1 libstdc++6_12.2.0-14 libstdc++6-arm64-cross_12.2.0-14cross1 libsub-override-perl_0.09-4 libsystemd0_252.6-1 libtasn1-6_4.19.0-2 libtext-glob-perl_0.11-3 libtinfo6_6.4-2 libtirpc-common_1.3.3+ds-1 libtirpc-dev_1.3.3+ds-1 libtirpc3_1.3.3+ds-1 libtool_2.4.7-5 libtsan0_11.3.0-12 libtsan2_12.2.0-14 libtsan2-arm64-cross_12.2.0-14cross1 libubsan1_12.2.0-14 libubsan1-arm64-cross_12.2.0-14cross1 libuchardet0_0.0.7-1 libudev1_252.6-1 libunistring2_1.0-2 libuuid1_2.38.1-5+b1 libxml-libxml-perl_2.0207+dfsg+really+2.0134-1+b1 libxml-namespacesupport-perl_1.12-2 libxml-sax-base-perl_1.09-3 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-2 libxml2_2.9.14+dfsg-1.2 libxxhash0_0.8.1-1 libyaml-perl_1.30-2 libzstd1_1.5.4+dfsg2-5 linux-libc-dev_6.1.25-1 linux-libc-dev-arm64-cross_6.1.4-1cross1 login_1:4.13+dfsg1-1+b1 logsave_1.47.0-2 m4_1.4.19-3 make_4.3-4.1 man-db_2.11.2-2 mawk_1.3.4.20200120-3.1 mount_2.38.1-5+b1 ncurses-base_6.4-2 ncurses-bin_6.4-2 passwd_1:4.13+dfsg1-1+b1 patch_2.7.6-7 perl_5.36.0-7 perl-base_5.36.0-7 perl-modules-5.34_5.34.0-5 perl-modules-5.36_5.36.0-7 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-1 sensible-utils_0.0.17+nmu1 sysvinit-utils_3.06-4 tar_1.34+dfsg-1.2 tzdata_2023c-3 ucf_3.0043+nmu1 usrmerge_35 util-linux_2.38.1-5+b1 util-linux-extra_2.38.1-5+b1 xz-utils_5.4.1-0.2 zlib1g_1:1.2.13.dfsg-1 zlib1g-dev_1:1.2.13.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: minimap Binary: minimap, libminimap0, libminimap-dev Architecture: any Version: 0.2-7 Maintainer: Debian Med Packaging Team Uploaders: Sascha Steinbiss Homepage: https://github.com/lh3/minimap Standards-Version: 4.6.1 Vcs-Browser: https://salsa.debian.org/med-team/minimap Vcs-Git: https://salsa.debian.org/med-team/minimap.git Testsuite: autopkgtest Testsuite-Triggers: build-essential Build-Depends: debhelper-compat (= 13), d-shlibs, zlib1g-dev Package-List: libminimap-dev deb libdevel optional arch=any libminimap0 deb libs optional arch=any minimap deb science optional arch=any Checksums-Sha1: 1ef8361ca16a92e898d901713b6f95e94c2b0db7 31209 minimap_0.2.orig.tar.gz 7c4325e1776ad4c8e30a66ebde841c3f1ab4f7ba 78748 minimap_0.2-7.debian.tar.xz Checksums-Sha256: cfcf77cfe2d8d64b16ea60e0139363190eca4853da9dca9d872c38fe80bf5d68 31209 minimap_0.2.orig.tar.gz d1775d5d9f68f561747b1d7bf751a079380ad805fe87bea6f71986ea4d26c73d 78748 minimap_0.2-7.debian.tar.xz Files: 15257d99648f486e86580d8a7accc96b 31209 minimap_0.2.orig.tar.gz b16c07bdbdccf88705ecd9a4d8919168 78748 minimap_0.2-7.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQIzBAEBCAAdFiEEWzS6WqtVB+kDQm6F6NN64vCfSHIFAmNQCkoACgkQ6NN64vCf SHIUWA//U2A3SGaPCX6sE07uH62Npobz/Sqj+wd9LrDYtxkJYPAw2EM1TZaanBqG T1Rt3jBZlfMkJUIaSIY6E/cvUQqn6ur20PeQwRknKq9DOPHQMv9+wbBFcjcAv7VB 8zCvCWwqY83Gr16t0baWn6mVtkrUZIqZniBkFXqRK30Dn92v8iEnC0qzPtXKs534 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debian/patches/series dpkg-source: info: applying make_shared_lib dpkg-source: info: applying hardening dpkg-source: info: applying ensure_64bit_value Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-62789404-aaa4-4cbb-b9cf-6840f47ea651 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package minimap dpkg-buildpackage: info: source version 0.2-7 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Sascha Steinbiss dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' rm -fr gmon.out *.o a.out minimap sdust minimap-lite *~ *.a *.dSYM session* make[1]: Leaving directory '/<>' dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a dh_auto_build -a make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=aarch64-linux-gnu-pkg-config CXX=aarch64-linux-gnu-g\+\+ CC=aarch64-linux-gnu-gcc make[1]: Entering directory '/<>' aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. main.c -o main.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. kthread.c -o kthread.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. misc.c -o misc.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. bseq.c -o bseq.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sketch.c -o sketch.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. sdust.c -o sdust.o aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. index.c -o index.o index.c: In function ‘mm_idx_load’: index.c:317:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 317 | fread(&mi->freq_thres, sizeof(float), 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:319:9: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 319 | fread(mi->len, 4, mi->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:324:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 324 | fread(&l, 1, 1, fp); | ^~~~~~~~~~~~~~~~~~~ index.c:326:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 326 | fread(mi->name[i], 1, l, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ index.c:335:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 335 | fread(&b->n, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:337:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 337 | fread(b->p, 8, b->n, fp); | ^~~~~~~~~~~~~~~~~~~~~~~~ index.c:338:17: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 338 | fread(&size, 4, 1, fp); | ^~~~~~~~~~~~~~~~~~~~~~ index.c:345:25: warning: ignoring return value of ‘fread’ declared with attribute ‘warn_unused_result’ [-Wunused-result] 345 | fread(x, 8, 2, fp); | ^~~~~~~~~~~~~~~~~~ aarch64-linux-gnu-gcc -c -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wdate-time -D_FORTIFY_SOURCE=2 -I. map.c -o map.o ar -csru libminimap.a kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-gcc -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -Wall -O2 -Wc++-compat -Wno-unused-function -fPIC -Wl,-z,relro -Wl,-z,now main.o -o minimap -L. -lminimap -lm -lz -lpthread aarch64-linux-gnu-gcc -shared -o libminimap.so.0 kthread.o misc.o bseq.o sketch.o sdust.o index.o map.o -fPIC -Wl,-soname,libminimap.so.0 -lm -lz -lpthread -Wl,-z,relro -Wl,-z,now make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' ln -s libminimap.so.* libminimap.so d-shlibmove --commit \ --multiarch \ --devunversioned \ --movedev "*.h" /usr/include/minimap \ libminimap.so Library package automatic movement utility --> zlib1g-dev package exists. set -e install -d -m 755 debian/libminimap-dev/usr/lib/aarch64-linux-gnu install -d -m 755 debian/libminimap0/usr/lib/aarch64-linux-gnu mv ./libminimap.a debian/libminimap-dev/usr/lib/aarch64-linux-gnu mv ./libminimap.la debian/libminimap-dev/usr/lib/aarch64-linux-gnu || true mv ./libminimap.so debian/libminimap-dev/usr/lib/aarch64-linux-gnu mv /<>/libminimap.so.0 debian/libminimap0/usr/lib/aarch64-linux-gnu PKGDEV=libminimap-dev PKGSHL=libminimap0 install -d -m 755 debian/libminimap-dev//usr/include/minimap mv *.h debian/libminimap-dev//usr/include/minimap mv: cannot stat './libminimap.la': No such file or directory make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dpkg-gencontrol: warning: Depends field of package libminimap-dev: substitution variable ${shlibs:Depends} used, but is not defined dpkg-gencontrol: warning: package libminimap-dev: substitution variable ${devlibs:Depends} unused, but is defined dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'minimap' in '../minimap_0.2-7_arm64.deb'. dpkg-deb: building package 'minimap-dbgsym' in '../minimap-dbgsym_0.2-7_arm64.deb'. dpkg-deb: building package 'libminimap0' in '../libminimap0_0.2-7_arm64.deb'. dpkg-deb: building package 'libminimap0-dbgsym' in '../libminimap0-dbgsym_0.2-7_arm64.deb'. dpkg-deb: building package 'libminimap-dev' in '../libminimap-dev_0.2-7_arm64.deb'. dpkg-genbuildinfo --build=any -O../minimap_0.2-7_arm64.buildinfo dpkg-genchanges --build=any -O../minimap_0.2-7_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2023-04-30T03:36:23Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ minimap_0.2-7_arm64.changes: ---------------------------- Format: 1.8 Date: Wed, 19 Oct 2022 16:29:56 +0200 Source: minimap Binary: libminimap-dev libminimap0 libminimap0-dbgsym minimap minimap-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 0.2-7 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Sascha Steinbiss Description: libminimap-dev - development headers for libminimap libminimap0 - library for approximate mapping of long biosequences minimap - tool for approximate mapping of long biosequences such as DNA rea Changes: minimap (0.2-7) unstable; urgency=medium . * Bump Standards-Version. * Fix watchfile format. * Bump d/copyright date. 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libminimap-dev libminimap0 libminimap0-dbgsym minimap minimap-dbgsym Architecture: arm64 Version: 0.2-7 Checksums-Md5: 242d67b356811abab3cbae3ab9402297 31700 libminimap-dev_0.2-7_arm64.deb ced81b8fef49414f8fc75692f0949401 46664 libminimap0-dbgsym_0.2-7_arm64.deb e320f5bab219c6e21e5f9ce7b16a1eca 20216 libminimap0_0.2-7_arm64.deb c9310f67f26863a83489b84020f2587f 52264 minimap-dbgsym_0.2-7_arm64.deb ba658de5c72e704227cb64ec630238c7 24280 minimap_0.2-7_arm64.deb Checksums-Sha1: cb328ba594455465003ef2885db181de485a9eb7 31700 libminimap-dev_0.2-7_arm64.deb 5ea42cb7590c09d439243ddbc9b95ce4b38b2c1c 46664 libminimap0-dbgsym_0.2-7_arm64.deb 5c42c881d05d9f9af6c63f0666c4703485e40ec5 20216 libminimap0_0.2-7_arm64.deb fb64487ede8187ddd366dbedb78a6927e67f1f9a 52264 minimap-dbgsym_0.2-7_arm64.deb addcc0a9ccff86f508d9d9cff128b4ce85e6d92d 24280 minimap_0.2-7_arm64.deb Checksums-Sha256: e37aabe5f3cb32f84ec9a49fe414436431000130a5d20e3dcb547b3377f19c81 31700 libminimap-dev_0.2-7_arm64.deb 8ff7f68e642caee6904280c3c39a44f24df6c5990f182bc714ec5c79cbdd0f91 46664 libminimap0-dbgsym_0.2-7_arm64.deb 005bef0b9f07f3c3553e6f94373727c137fe55beee36e7cebba5f416f765940f 20216 libminimap0_0.2-7_arm64.deb e0443079d34c1905a402add9e770d5f914a73dbebf08aa9fb4334ecb24cbc177 52264 minimap-dbgsym_0.2-7_arm64.deb fd52298d5f56da698261ab7be7cf9758c1979ea578c074198c9f0a17dae9b0ab 24280 minimap_0.2-7_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 30 Apr 2023 03:36:23 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: adduser (= 3.132), apt (= 2.6.0), autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-12), autotools-dev (= 20220109.1), base-files (= 12.4), base-passwd (= 3.6.1), bash (= 5.2.15-2+b2), binutils (= 2.40-2), binutils-common (= 2.40-2), binutils-x86-64-linux-gnu (= 2.40-2), bsdextrautils (= 2.38.1-5+b1), bsdutils (= 1:2.38.1-5+b1), build-essential (= 12.9), bzip2 (= 1.0.8-5+b1), coreutils (= 9.1-1), cpp (= 4:12.2.0-3), cpp-11 (= 11.3.0-12), cpp-12 (= 12.2.0-14), d-shlibs (= 0.104), dash (= 0.5.12-2), debconf (= 1.5.82), debhelper (= 13.11.4), debian-archive-keyring (= 2023.3), debianutils (= 5.7-0.4), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.8-4), dpkg (= 1.21.21), dpkg-dev (= 1.21.21), dwz (= 0.15-1), file (= 1:5.44-3), findutils (= 4.9.0-4), g++ (= 4:12.2.0-3), g++-12 (= 12.2.0-14), gcc (= 4:12.2.0-3), gcc-11 (= 11.3.0-12), gcc-11-base (= 11.3.0-12), gcc-12 (= 12.2.0-14), gcc-12-base (= 12.2.0-14), gettext (= 0.21-12), gettext-base (= 0.21-12), gpgv (= 2.2.40-1.1), grep (= 3.8-5), groff-base (= 1.22.4-10), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.65.2), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-3), libapt-pkg6.0 (= 2.6.0), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.3.0-12), libasan8 (= 12.2.0-14), libatomic1 (= 12.2.0-14), libattr1 (= 1:2.5.1-4), libaudit-common (= 1:3.0.9-1), libaudit1 (= 1:3.0.9-1), libbinutils (= 2.40-2), libblkid1 (= 2.38.1-5+b1), libbz2-1.0 (= 1.0.8-5+b1), libc-bin (= 2.36-9), libc-dev-bin (= 2.36-9), libc6 (= 2.36-9), libc6-dev (= 2.36-9), libcap-ng0 (= 0.8.3-1+b3), libcap2 (= 1:2.66-3), libcc1-0 (= 12.2.0-14), libcom-err2 (= 1.47.0-2), libcrypt-dev (= 1:4.4.33-2), libcrypt1 (= 1:4.4.33-2), libctf-nobfd0 (= 2.40-2), libctf0 (= 2.40-2), libdb5.3 (= 5.3.28+dfsg2-1), libdebconfclient0 (= 0.269), libdebhelper-perl (= 13.11.4), libdpkg-perl (= 1.21.21), libelf1 (= 0.188-2.1), libffi8 (= 3.4.4-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 11.3.0-12), libgcc-12-dev (= 12.2.0-14), libgcc-s1 (= 12.2.0-14), libgcrypt20 (= 1.10.1-3), libgdbm-compat4 (= 1.23-3), libgdbm6 (= 1.23-3), libgmp10 (= 2:6.2.1+dfsg1-1.1), libgnutls30 (= 3.7.9-2), libgomp1 (= 12.2.0-14), libgpg-error0 (= 1.46-1), libgprofng0 (= 2.40-2), libgssapi-krb5-2 (= 1.20.1-1+b1), libhogweed6 (= 3.8.1-2), libicu72 (= 72.1-3), libidn2-0 (= 2.3.3-1+b1), libisl23 (= 0.25-1), libitm1 (= 12.2.0-14), libjansson4 (= 2.14-2), libk5crypto3 (= 1.20.1-1+b1), libkeyutils1 (= 1.6.3-2), libkrb5-3 (= 1.20.1-1+b1), libkrb5support0 (= 1.20.1-1+b1), liblsan0 (= 12.2.0-14), liblz4-1 (= 1.9.4-1), liblzma5 (= 5.4.1-0.2), libmagic-mgc (= 1:5.44-3), libmagic1 (= 1:5.44-3), libmd0 (= 1.0.4-2), libmount1 (= 2.38.1-5+b1), libmpc3 (= 1.3.1-1), libmpfr6 (= 4.2.0-1), libnettle8 (= 3.8.1-2), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libnumber-compare-perl (= 0.03-3), libp11-kit0 (= 0.24.1-2), libpam-modules (= 1.5.2-6), libpam-modules-bin (= 1.5.2-6), libpam-runtime (= 1.5.2-6), libpam0g (= 1.5.2-6), libpcre2-8-0 (= 10.42-1), libperl5.36 (= 5.36.0-7), libpipeline1 (= 1.5.7-1), libquadmath0 (= 12.2.0-14), libseccomp2 (= 2.5.4-1+b3), libselinux1 (= 3.4-1+b5), libsemanage-common (= 3.4-1), libsemanage2 (= 3.4-1+b5), libsepol2 (= 3.4-2), libsmartcols1 (= 2.38.1-5+b1), libssl3 (= 3.0.8-1), libstdc++-12-dev (= 12.2.0-14), libstdc++6 (= 12.2.0-14), libsub-override-perl (= 0.09-4), libsystemd0 (= 252.6-1), libtasn1-6 (= 4.19.0-2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4-2), libtirpc-common (= 1.3.3+ds-1), libtirpc-dev (= 1.3.3+ds-1), libtirpc3 (= 1.3.3+ds-1), libtool (= 2.4.7-5), libtsan0 (= 11.3.0-12), libtsan2 (= 12.2.0-14), libubsan1 (= 12.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 252.6-1), libunistring2 (= 1.0-2), libuuid1 (= 2.38.1-5+b1), libxml2 (= 2.9.14+dfsg-1.2), libxxhash0 (= 0.8.1-1), libzstd1 (= 1.5.4+dfsg2-5), linux-libc-dev (= 6.1.25-1), login (= 1:4.13+dfsg1-1+b1), m4 (= 1.4.19-3), make (= 4.3-4.1), man-db (= 2.11.2-2), mawk (= 1.3.4.20200120-3.1), ncurses-base (= 6.4-2), ncurses-bin (= 6.4-2), passwd (= 1:4.13+dfsg1-1+b1), patch (= 2.7.6-7), perl (= 5.36.0-7), perl-base (= 5.36.0-7), perl-modules-5.36 (= 5.36.0-7), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-1), sensible-utils (= 0.0.17+nmu1), sysvinit-utils (= 3.06-4), tar (= 1.34+dfsg-1.2), usrmerge (= 35), util-linux (= 2.38.1-5+b1), util-linux-extra (= 2.38.1-5+b1), xz-utils (= 5.4.1-0.2), zlib1g (= 1:1.2.13.dfsg-1), zlib1g-dev (= 1:1.2.13.dfsg-1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1666189796" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libminimap-dev_0.2-7_arm64.deb ------------------------------ new Debian package, version 2.0. size 31700 bytes: control archive=1028 bytes. 704 bytes, 18 lines control 722 bytes, 11 lines md5sums Package: libminimap-dev Source: minimap Version: 0.2-7 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 118 Depends: libminimap0 (= 0.2-7), zlib1g-dev Section: libdevel Priority: optional Multi-Arch: same Homepage: https://github.com/lh3/minimap Description: development headers for libminimap Minimap is an experimental tool to efficiently find multiple approximate mapping positions between two sets of long sequences, such as between DNA reads and reference genomes, between genomes and between long noisy reads. . This package contains the C library headers for using minimap in custom tools, along with a static library. drwxr-xr-x root/root 0 2022-10-19 14:29 ./ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/include/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/include/minimap/ -rw-r--r-- root/root 359 2015-12-07 02:29 ./usr/include/minimap/bseq.h -rw-r--r-- root/root 4294 2022-10-19 14:29 ./usr/include/minimap/kdq.h -rw-r--r-- root/root 21313 2015-12-07 02:29 ./usr/include/minimap/khash.h -rw-r--r-- root/root 8741 2015-12-07 02:29 ./usr/include/minimap/kseq.h -rw-r--r-- root/root 5390 2015-12-07 02:29 ./usr/include/minimap/ksort.h -rw-r--r-- root/root 3289 2015-12-07 02:29 ./usr/include/minimap/kvec.h -rw-r--r-- root/root 3053 2015-12-07 02:29 ./usr/include/minimap/minimap.h -rw-r--r-- root/root 539 2015-12-07 02:29 ./usr/include/minimap/sdust.h drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 53796 2022-10-19 14:29 ./usr/lib/aarch64-linux-gnu/libminimap.a lrwxrwxrwx root/root 0 2022-10-19 14:29 ./usr/lib/aarch64-linux-gnu/libminimap.so -> libminimap.so.0 drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/libminimap-dev/ -rw-r--r-- root/root 701 2022-10-19 14:29 ./usr/share/doc/libminimap-dev/changelog.Debian.gz -rw-r--r-- root/root 2191 2022-10-19 14:29 ./usr/share/doc/libminimap-dev/copyright libminimap0-dbgsym_0.2-7_arm64.deb ---------------------------------- new Debian package, version 2.0. size 46664 bytes: control archive=548 bytes. 394 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libminimap0-dbgsym Source: minimap Version: 0.2-7 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 63 Depends: libminimap0 (= 0.2-7) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libminimap0 Build-Ids: e8d0296464ea1e0fe906b671b5bc12438f371126 drwxr-xr-x root/root 0 2022-10-19 14:29 ./ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/.build-id/e8/ -rw-r--r-- root/root 53256 2022-10-19 14:29 ./usr/lib/debug/.build-id/e8/d0296464ea1e0fe906b671b5bc12438f371126.debug drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-19 14:29 ./usr/share/doc/libminimap0-dbgsym -> libminimap0 libminimap0_0.2-7_arm64.deb --------------------------- new Debian package, version 2.0. size 20216 bytes: control archive=912 bytes. 695 bytes, 18 lines control 226 bytes, 3 lines md5sums 34 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libminimap0 Source: minimap Version: 0.2-7 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 81 Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4) Section: libs Priority: optional Multi-Arch: same Homepage: https://github.com/lh3/minimap Description: library for approximate mapping of long biosequences Minimap is an experimental tool to efficiently find multiple approximate mapping positions between two sets of long sequences, such as between DNA reads and reference genomes, between genomes and between long noisy reads. . This package contains a shared library offering the minimap API to custom C programs. drwxr-xr-x root/root 0 2022-10-19 14:29 ./ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/aarch64-linux-gnu/ -rw-r--r-- root/root 67616 2022-10-19 14:29 ./usr/lib/aarch64-linux-gnu/libminimap.so.0 drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/libminimap0/ -rw-r--r-- root/root 701 2022-10-19 14:29 ./usr/share/doc/libminimap0/changelog.Debian.gz -rw-r--r-- root/root 2191 2022-10-19 14:29 ./usr/share/doc/libminimap0/copyright minimap-dbgsym_0.2-7_arm64.deb ------------------------------ new Debian package, version 2.0. size 52264 bytes: control archive=528 bytes. 365 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: minimap-dbgsym Source: minimap Version: 0.2-7 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 69 Depends: minimap (= 0.2-7) Section: debug Priority: optional Description: debug symbols for minimap Build-Ids: c9445d37039e9dad36ee1620dcca9e0cc0b3598f drwxr-xr-x root/root 0 2022-10-19 14:29 ./ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/lib/debug/.build-id/c9/ -rw-r--r-- root/root 60120 2022-10-19 14:29 ./usr/lib/debug/.build-id/c9/445d37039e9dad36ee1620dcca9e0cc0b3598f.debug drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-10-19 14:29 ./usr/share/doc/minimap-dbgsym -> minimap minimap_0.2-7_arm64.deb ----------------------- new Debian package, version 2.0. size 24280 bytes: control archive=960 bytes. 973 bytes, 20 lines control 258 bytes, 4 lines md5sums Package: minimap Version: 0.2-7 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 83 Depends: libc6 (>= 2.34), zlib1g (>= 1:1.1.4) Section: science Priority: optional Homepage: https://github.com/lh3/minimap Description: tool for approximate mapping of long biosequences such as DNA reads Minimap is an experimental tool to efficiently find multiple approximate mapping positions between two sets of long biological sequences, such as between DNA reads and reference genomes, between genomes and between long noisy reads. Minimap does not generate alignments as of now and because of this, it is usually tens of times faster than mainstream aligners. It does not replace mainstream aligners, but it can be useful when you want to quickly identify long approximate matches at moderate divergence among a huge collection of sequences. For this task, it is much faster than most existing tools. drwxr-xr-x root/root 0 2022-10-19 14:29 ./ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/bin/ -rwxr-xr-x root/root 67776 2022-10-19 14:29 ./usr/bin/minimap drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/doc/minimap/ -rw-r--r-- root/root 700 2022-10-19 14:29 ./usr/share/doc/minimap/changelog.Debian.gz -rw-r--r-- root/root 2191 2022-10-19 14:29 ./usr/share/doc/minimap/copyright drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/man/ drwxr-xr-x root/root 0 2022-10-19 14:29 ./usr/share/man/man1/ -rw-r--r-- root/root 2365 2022-10-19 14:29 ./usr/share/man/man1/minimap.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [546 B] Get:5 copy:/<>/apt_archive ./ Packages [633 B] Fetched 2142 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 libregexp-ipv6-perl libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:arm64 t1utils unzip 0 upgraded, 127 newly installed, 0 to remove and 0 not upgraded. Need to get 13.7 MB of archives. After this operation, 51.4 MB of additional disk space will be used. 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libfont-ttf-perl all 1.06-2 [318 kB] Get:65 http://localhost:3142/debian sid/main amd64 libio-html-perl all 1.004-3 [16.2 kB] Get:66 http://localhost:3142/debian sid/main amd64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:67 http://localhost:3142/debian sid/main amd64 libhttp-message-perl all 6.44-1 [81.7 kB] Get:68 http://localhost:3142/debian sid/main amd64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:69 http://localhost:3142/debian sid/main amd64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:70 http://localhost:3142/debian sid/main amd64 libhtml-tree-perl all 5.07-3 [211 kB] Get:71 http://localhost:3142/debian sid/main amd64 libhttp-cookies-perl all 6.10-1 [19.6 kB] Get:72 http://localhost:3142/debian sid/main amd64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:73 http://localhost:3142/debian sid/main amd64 perl-openssl-defaults amd64 7+b1 [7924 B] Get:74 http://localhost:3142/debian sid/main amd64 libnet-ssleay-perl amd64 1.92-2+b1 [317 kB] Get:75 http://localhost:3142/debian sid/main amd64 libio-socket-ssl-perl all 2.081-2 [219 kB] Get:76 http://localhost:3142/debian sid/main amd64 libnet-http-perl all 6.22-1 [25.3 kB] Get:77 http://localhost:3142/debian sid/main amd64 liblwp-protocol-https-perl all 6.10-1 [12.2 kB] Get:78 http://localhost:3142/debian sid/main amd64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:79 http://localhost:3142/debian sid/main amd64 libwww-perl all 6.68-1 [186 kB] Get:80 http://localhost:3142/debian sid/main amd64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:81 http://localhost:3142/debian sid/main amd64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:82 http://localhost:3142/debian sid/main amd64 libio-interactive-perl all 1.023-2 [11.0 kB] Get:83 http://localhost:3142/debian sid/main amd64 libipc-run3-perl all 0.048-3 [33.2 kB] Get:84 http://localhost:3142/debian sid/main amd64 libjson-maybexs-perl all 1.004004-1 [13.3 kB] Get:85 http://localhost:3142/debian sid/main amd64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:86 http://localhost:3142/debian sid/main amd64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:87 http://localhost:3142/debian sid/main amd64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:88 http://localhost:3142/debian sid/main amd64 liblz1 amd64 1.13-5 [37.7 kB] Get:89 http://localhost:3142/debian sid/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:90 http://localhost:3142/debian sid/main amd64 libmarkdown2 amd64 2.2.7-2 [37.0 kB] Get:91 http://localhost:3142/debian sid/main amd64 libmldbm-perl all 2.05-4 [16.8 kB] Get:92 http://localhost:3142/debian sid/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:93 http://localhost:3142/debian sid/main amd64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:94 http://localhost:3142/debian sid/main amd64 libmoo-perl all 2.005005-1 [58.0 kB] Get:95 http://localhost:3142/debian sid/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:96 http://localhost:3142/debian sid/main amd64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:97 http://localhost:3142/debian sid/main amd64 libmouse-perl amd64 2.5.10-1+b3 [170 kB] Get:98 http://localhost:3142/debian sid/main amd64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:99 http://localhost:3142/debian sid/main amd64 libsub-identify-perl amd64 0.14-3 [10.9 kB] Get:100 http://localhost:3142/debian sid/main amd64 libsub-name-perl amd64 0.26-2+b1 [12.6 kB] Get:101 http://localhost:3142/debian sid/main amd64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:102 http://localhost:3142/debian sid/main amd64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:103 http://localhost:3142/debian sid/main amd64 libperlio-gzip-perl amd64 0.20-1+b1 [17.3 kB] Get:104 http://localhost:3142/debian sid/main amd64 libperlio-utf8-strict-perl amd64 0.010-1 [11.4 kB] Get:105 http://localhost:3142/debian sid/main amd64 libproc-processtable-perl amd64 0.634-1+b2 [43.1 kB] Get:106 http://localhost:3142/debian sid/main amd64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:107 http://localhost:3142/debian sid/main amd64 libsereal-decoder-perl amd64 5.003+ds-1 [99.5 kB] Get:108 http://localhost:3142/debian sid/main amd64 libsereal-encoder-perl amd64 5.003+ds-1 [102 kB] Get:109 http://localhost:3142/debian sid/main amd64 libsort-versions-perl all 1.62-3 [8928 B] Get:110 http://localhost:3142/debian sid/main amd64 libxs-parse-keyword-perl amd64 0.33-1 [58.4 kB] Get:111 http://localhost:3142/debian sid/main amd64 libsyntax-keyword-try-perl amd64 0.28-1 [28.6 kB] Get:112 http://localhost:3142/debian sid/main amd64 libterm-readkey-perl amd64 2.38-2+b1 [24.5 kB] Get:113 http://localhost:3142/debian sid/main amd64 libtext-levenshteinxs-perl amd64 0.03-5+b1 [8404 B] Get:114 http://localhost:3142/debian sid/main amd64 libtext-markdown-discount-perl amd64 0.16-1 [13.0 kB] Get:115 http://localhost:3142/debian sid/main amd64 libtext-xslate-perl amd64 3.5.9-1+b2 [198 kB] Get:116 http://localhost:3142/debian sid/main amd64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:117 http://localhost:3142/debian sid/main amd64 libtime-moment-perl amd64 0.44-2+b1 [73.0 kB] Get:118 http://localhost:3142/debian sid/main amd64 libunicode-utf8-perl amd64 0.62-2 [20.2 kB] Get:119 http://localhost:3142/debian sid/main amd64 libwww-mechanize-perl all 2.16-1 [116 kB] Get:120 http://localhost:3142/debian sid/main amd64 libyaml-0-2 amd64 0.2.5-1 [53.6 kB] Get:121 http://localhost:3142/debian sid/main amd64 libyaml-libyaml-perl amd64 0.86+ds-1 [34.4 kB] Get:122 http://localhost:3142/debian sid/main amd64 plzip amd64 1.10-5 [61.9 kB] Get:123 http://localhost:3142/debian sid/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:124 http://localhost:3142/debian sid/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:125 http://localhost:3142/debian sid/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:126 http://localhost:3142/debian sid/main amd64 unzip amd64 6.0-28 [166 kB] Get:127 http://localhost:3142/debian sid/main amd64 lintian all 2.116.3 [1130 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.7 MB in 0s (155 MB/s) Selecting previously unselected package netbase. (Reading database ... 21426 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-1.3_all.deb ... Unpacking readline-common (8.2-1.3) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.0.8-1_amd64.deb ... Unpacking openssl (3.0.8-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20230311_all.deb ... Unpacking ca-certificates (20230311) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.65-1_amd64.deb ... Unpacking diffstat (1.65-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../005-libassuan0_2.5.5-5_amd64.deb ... Unpacking libassuan0:amd64 (2.5.5-5) ... Selecting previously unselected package libreadline8:amd64. 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Setting up liblz1:amd64 (1.13-5) ... Setting up libberkeleydb-perl:amd64 (0.64-2+b1) ... Setting up plzip (1.10-5) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2) ... Setting up libmouse-perl (2.5.10-1+b3) ... Setting up libdata-messagepack-perl (1.02-1+b1) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.14-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:amd64 (0.46-1) ... Setting up libyaml-0-2:amd64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3) ... Setting up libcpanel-json-xs-perl:amd64 (4.35-1) ... Setting up libhtml-tagset-perl (3.20-6) ... 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Setting up iso-codes (4.15.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b1) ... Setting up libnet-ssleay-perl:amd64 (1.92-2+b1) ... Setting up libhttp-date-perl (6.05-2) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.15-1) ... Setting up libreadline8:amd64 (8.2-1.3) ... Setting up libnet-http-perl (6.22-1) ... Setting up libtext-markdown-discount-perl (0.16-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:amd64 (0.008-2) ... Setting up ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 140 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-2) ... Setting up libdata-optlist-perl (0.113-1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:amd64 (3.81-1) ... Setting up gpgconf (2.2.40-1.1) ... Setting up libio-socket-ssl-perl (2.081-2) ... Setting up gpg (2.2.40-1.1) ... Setting up libsub-exporter-perl (0.989-1) ... Setting up libhttp-message-perl (6.44-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.10-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:amd64 (0.015-2+b1) ... Setting up libcgi-pm-perl (4.55-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.58-2) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.26-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.68-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.16-1) ... Setting up liblwp-protocol-https-perl (6.10-1) ... Setting up lintian (2.116.3) ... Setting up sbuild-build-depends-lintian-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.36-9) ... Processing triggers for man-db (2.11.2-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20230311) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 1688 Build-Time: 5 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 10 Job: minimap_0.2-7 Lintian: pass Machine Architecture: amd64 Package: minimap Package-Time: 25 Source-Version: 0.2-7 Space: 1688 Status: successful Version: 0.2-7 -------------------------------------------------------------------------------- Finished at 2023-04-30T03:36:23Z Build needed 00:00:25, 1688k disk space