sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | mmseqs2 12-113e3+ds-3 (mipsel) Fri, 26 Feb 2021 00:18:42 +0000 | +==============================================================================+ Package: mmseqs2 Version: 12-113e3+ds-3 Source Version: 12-113e3+ds-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-54ccb28c-03ed-47a6-bd55-274c5a253246' with '<>' I: NOTICE: Log filtering will replace 'build/mmseqs2-VNjm0d/resolver-0DcGsU' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [153 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-02-25-2000.22-F-2021-02-25-0800.30.pdiff [22.5 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources T-2021-02-25-2000.22-F-2021-02-25-0800.30.pdiff [22.5 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-02-25-2000.22-F-2021-02-25-0800.30.pdiff [21.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages T-2021-02-25-2000.22-F-2021-02-25-0800.30.pdiff [21.9 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [8290 kB] Fetched 8615 kB in 4s (2234 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: debian-archive-keyring 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 93.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 debian-archive-keyring all 2021.1.1 [93.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 93.6 kB in 0s (6878 kB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 10482 files and directories currently installed.) Preparing to unpack .../debian-archive-keyring_2021.1.1_all.deb ... Unpacking debian-archive-keyring (2021.1.1) over (2021.1) ... Setting up debian-archive-keyring (2021.1.1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mmseqs2' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mmseqs2.git Please use: git clone https://salsa.debian.org/med-team/mmseqs2.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.1 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main mmseqs2 12-113e3+ds-3 (dsc) [2357 B] Get:2 http://debian.oregonstate.edu/debian unstable/main mmseqs2 12-113e3+ds-3 (tar) [4504 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main mmseqs2 12-113e3+ds-3 (diff) [6553 kB] Fetched 11.1 MB in 0s (91.3 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mmseqs2-VNjm0d/mmseqs2-12-113e3+ds' with '<>' I: NOTICE: Log filtering will replace 'build/mmseqs2-VNjm0d' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel, cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev Filtered Build-Depends: debhelper-compat (= 13), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel, cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [442 B] Get:5 copy:/<>/apt_archive ./ Packages [525 B] Fetched 1924 B in 0s (75.5 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libbrotli1 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libgzstream-dev:mipsel libgzstream0:mipsel libicu67 libio-string-perl libjsoncpp24 libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsimde-dev libssh2-1 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd-dev:mipsel libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf procps sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc ninja-build gcc-10-locales cpp-doc dh-make binutils-multiarch debian-keyring g++-multilib g++-10-multilib gcc-10-doc g++-10-multilib-mipsel-linux-gnu gcc-10-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel gnupg git bzr krb5-doc:mipsel krb5-user:mipsel libstdc++-10-doc libstdc++-9-doc:mipsel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser perl-doc libterm-readline-gnu-perl | libterm-readline-perl-perl libtap-harness-archive-perl libmail-box-perl Recommended packages: gnupg libalgorithm-merge-perl curl | wget | lynx bzip2-doc:mipsel libidn2-0:mipsel libnss-nis:mipsel libnss-nisplus:mipsel ca-certificates libfile-fcntllock-perl libarchive-cpio-perl krb5-locales:mipsel libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl netbase libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdextrautils build-essential cmake cmake-data cpp-10-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dpkg-dev dwz file g++ g++-10 g++-10-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-10-mipsel-linux-gnu gcc-10-mipsel-linux-gnu-base gcc-9-base:mipsel gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13 libatomic1:mipsel libatomic1-mipsel-cross libbrotli1 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libcom-err2:mipsel libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libcurl4 libdebhelper-perl libdebian-dpkgcross-perl libdpkg-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-10-dev-mipsel-cross libgcc-9-dev:mipsel libgcc-s1:mipsel libgcc-s1-mipsel-cross libgomp1:mipsel libgomp1-mipsel-cross libgssapi-krb5-2:mipsel libgzstream-dev:mipsel libgzstream0:mipsel libicu67 libio-string-perl libjsoncpp24 libk5crypto3:mipsel libkeyutils1:mipsel libkrb5-3:mipsel libkrb5support0:mipsel libldap-2.4-2 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libnghttp2-14 libnsl-dev libnsl-dev:mipsel libnsl2:mipsel libperl5.32 libpipeline1 libprocps8 libpsl5 librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsigsegv2 libsimde-dev libssh2-1 libssl1.1:mipsel libstdc++-10-dev libstdc++-10-dev-mipsel-cross libstdc++-9-dev:mipsel libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtirpc-dev libtirpc-dev:mipsel libtirpc3:mipsel libtool libuchardet0 libuv1 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd-dev:mipsel libzstd1:mipsel linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db perl perl-modules-5.32 po-debconf procps sbuild-build-depends-main-dummy:mipsel sensible-utils ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 132 newly installed, 0 to remove and 0 not upgraded. Need to get 105 MB of archives. After this operation, 422 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [948 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 bsdextrautils amd64 2.36.1-7 [145 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.7-1 [67.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-6 [936 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.3-1 [34.3 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.4-2 [1354 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 perl-modules-5.32 all 5.32.1-2 [2823 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libperl5.32 amd64 5.32.1-2 [4101 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 perl amd64 5.32.1-2 [293 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4+b1 [19.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10.2.1-6 [201 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-9-base mipsel 9.3.0-22 [198 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2+20201114-2 [102 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.17-4 [63.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.17-4 [501 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.14 [14.8 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.39-3 [273 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.39-3 [126 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.39-3 [69.1 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.21-4 [175 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0043 [74.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.13-1 [34.8 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-5 [204 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-14 [313 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.3-2 [814 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.21-4 [510 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.35.1-6cross1 [2356 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.17-1 [104 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libtirpc-dev amd64 1.3.1-1 [190 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libnsl-dev amd64 1.3.0-2 [66.4 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.31-9 [2346 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev amd64 10.2.1-6 [1741 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10 amd64 10.2.1-6 [9380 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:10.2.1-1 [1644 B] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libdpkg-perl all 1.20.7.1 [1537 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-dev all 1.20.7.1 [2149 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.9 [7704 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 cmake-data all 3.18.4-2 [1725 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libicu67 amd64 67.1-6 [8625 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-6.3+b1 [693 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive13 amd64 3.4.3-2 [342 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libbrotli1 amd64 1.0.9-2+b2 [279 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-modules-db amd64 2.1.27+dfsg-2.1 [69.1 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libsasl2-2 amd64 2.1.27+dfsg-2.1 [106 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libldap-2.4-2 amd64 2.4.57+dfsg-2 [232 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libnghttp2-14 amd64 1.43.0-1 [77.1 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libpsl5 amd64 0.21.0-1.2 [57.3 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 librtmp1 amd64 2.4+20151223.gitfa8646d.1-2+b2 [60.8 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libssh2-1 amd64 1.9.0-2 [156 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libcurl4 amd64 7.74.0-1.1 [341 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.10-2 [96.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libjsoncpp24 amd64 1.9.4-4 [78.9 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 librhash0 amd64 1.4.1-1 [129 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libuv1 amd64 1.40.0-1 [132 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 cmake amd64 3.18.4-2 [5593 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu-base amd64 10.2.1-3cross1 [201 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-10-mipsel-linux-gnu amd64 10.2.1-3cross1 [6981 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:10.2.0-1 [16.9 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.16 [31.3 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10.2.1-3cross1 [196 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.31-9cross1 [1188 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10.2.1-3cross1 [46.5 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10.2.1-3cross1 [91.1 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10.2.1-3cross1 [6628 B] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-10-dev-mipsel-cross all 10.2.1-3cross1 [244 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-mipsel-linux-gnu amd64 10.2.1-3cross1 [13.6 MB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:10.2.0-1 [1456 B] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10.2.1-3cross1 [397 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.10.13-1cross1 [1381 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.31-9cross1 [2021 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-10-dev-mipsel-cross all 10.2.1-3cross1 [1750 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 g++-10-mipsel-linux-gnu amd64 10.2.1-3cross1 [7647 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:10.2.0-1 [1180 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2+b1 [337 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.16 [30.3 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.16 [41.3 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.9 [6728 B] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13.3.3 [189 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-15 [513 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.11.0-1 [25.6 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.11.0-1 [15.3 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.183-1 [165 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13+20210201-1 [175 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.21-4 [1311 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13.3.3 [1011 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10.2.1-6 [46.2 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.17-1 [111 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.31-9 [2414 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10.2.1-6 [6704 B] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.8-4 [46.1 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.10.13-1 [1277 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.17-1 [132 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mipsel libcom-err2 mipsel 1.46.1-1 [73.3 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5support0 mipsel 1.18.3-4 [64.3 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mipsel libk5crypto3 mipsel 1.18.3-4 [118 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mipsel libkeyutils1 mipsel 1.6.1-2 [14.9 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mipsel libssl1.1 mipsel 1.1.1j-1 [1190 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main mipsel libkrb5-3 mipsel 1.18.3-4 [335 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mipsel libgssapi-krb5-2 mipsel 1.18.3-4 [149 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc3 mipsel 1.3.1-1 [73.6 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl2 mipsel 1.3.0-2 [35.2 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mipsel libtirpc-dev mipsel 1.3.1-1 [196 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mipsel libnsl-dev mipsel 1.3.0-2 [69.1 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.31-9 [2011 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-dev mipsel 1.0.8-4 [31.6 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10.2.1-6 [92.9 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-9-dev mipsel 9.3.0-22 [222 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10.2.1-6 [437 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mipsel libgzstream0 mipsel 1.5+dfsg-5 [6692 B] Get:126 http://debian.oregonstate.edu/debian unstable/main mipsel libgzstream-dev mipsel 1.5+dfsg-5 [7272 B] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 libsimde-dev all 0.7.2-4 [259 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-9-dev mipsel 9.3.0-22 [1721 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mipsel libzstd1 mipsel 1.4.8+dfsg-2 [311 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mipsel libzstd-dev mipsel 1.4.8+dfsg-2 [389 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 105 MB in 1s (118 MB/s) Selecting previously unselected package bsdextrautils. (Reading database ... 10482 files and directories currently installed.) Preparing to unpack .../000-bsdextrautils_2.36.1-7_amd64.deb ... Unpacking bsdextrautils (2.36.1-7) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../001-libuchardet0_0.0.7-1_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.7-1) ... Selecting previously unselected package groff-base. Preparing to unpack .../002-groff-base_1.22.4-6_amd64.deb ... Unpacking groff-base (1.22.4-6) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../003-libpipeline1_1.5.3-1_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.3-1) ... Selecting previously unselected package man-db. Preparing to unpack .../004-man-db_2.9.4-2_amd64.deb ... Unpacking man-db (2.9.4-2) ... Selecting previously unselected package perl-modules-5.32. Preparing to unpack .../005-perl-modules-5.32_5.32.1-2_all.deb ... Unpacking perl-modules-5.32 (5.32.1-2) ... Selecting previously unselected package libperl5.32:amd64. Preparing to unpack .../006-libperl5.32_5.32.1-2_amd64.deb ... Unpacking libperl5.32:amd64 (5.32.1-2) ... Selecting previously unselected package perl. Preparing to unpack .../007-perl_5.32.1-2_amd64.deb ... Unpacking perl (5.32.1-2) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../008-liblocale-gettext-perl_1.07-4+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../009-gcc-10-base_10.2.1-6_mipsel.deb ... Unpacking gcc-10-base:mipsel (10.2.1-6) ... Selecting previously unselected package gcc-9-base:mipsel. Preparing to unpack .../010-gcc-9-base_9.3.0-22_mipsel.deb ... Unpacking gcc-9-base:mipsel (9.3.0-22) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../011-libncurses6_6.2+20201114-2_amd64.deb ... Unpacking libncurses6:amd64 (6.2+20201114-2) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../012-libprocps8_2%3a3.3.17-4_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.17-4) ... Selecting previously unselected package procps. Preparing to unpack .../013-procps_2%3a3.3.17-4_amd64.deb ... Unpacking procps (2:3.3.17-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../014-sensible-utils_0.0.14_all.deb ... Unpacking sensible-utils (0.0.14) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../015-libmagic-mgc_1%3a5.39-3_amd64.deb ... Unpacking libmagic-mgc (1:5.39-3) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../016-libmagic1_1%3a5.39-3_amd64.deb ... Unpacking libmagic1:amd64 (1:5.39-3) ... Selecting previously unselected package file. Preparing to unpack .../017-file_1%3a5.39-3_amd64.deb ... Unpacking file (1:5.39-3) ... Selecting previously unselected package gettext-base. Preparing to unpack .../018-gettext-base_0.21-4_amd64.deb ... Unpacking gettext-base (0.21-4) ... Selecting previously unselected package ucf. Preparing to unpack .../019-ucf_3.0043_all.deb ... Moving old data out of the way Unpacking ucf (3.0043) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../020-libsigsegv2_2.13-1_amd64.deb ... Unpacking libsigsegv2:amd64 (2.13-1) ... Selecting previously unselected package m4. Preparing to unpack .../021-m4_1.4.18-5_amd64.deb ... Unpacking m4 (1.4.18-5) ... Selecting previously unselected package autoconf. Preparing to unpack .../022-autoconf_2.69-14_all.deb ... Unpacking autoconf (2.69-14) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../023-autotools-dev_20180224.1+nmu1_all.deb ... Unpacking autotools-dev (20180224.1+nmu1) ... Selecting previously unselected package automake. Preparing to unpack .../024-automake_1%3a1.16.3-2_all.deb ... Unpacking automake (1:1.16.3-2) ... Selecting previously unselected package autopoint. Preparing to unpack .../025-autopoint_0.21-4_all.deb ... Unpacking autopoint (0.21-4) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../026-binutils-mipsel-linux-gnu_2.35.1-6cross1_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.35.1-6cross1) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../027-libcrypt-dev_1%3a4.4.17-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.17-1) ... Selecting previously unselected package libtirpc-dev:amd64. Preparing to unpack .../028-libtirpc-dev_1.3.1-1_amd64.deb ... Unpacking libtirpc-dev:amd64 (1.3.1-1) ... Selecting previously unselected package libnsl-dev:amd64. Preparing to unpack .../029-libnsl-dev_1.3.0-2_amd64.deb ... Unpacking libnsl-dev:amd64 (1.3.0-2) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../030-libc6-dev_2.31-9_amd64.deb ... Unpacking libc6-dev:amd64 (2.31-9) ... Selecting previously unselected package libstdc++-10-dev:amd64. Preparing to unpack .../031-libstdc++-10-dev_10.2.1-6_amd64.deb ... Unpacking libstdc++-10-dev:amd64 (10.2.1-6) ... Selecting previously unselected package g++-10. Preparing to unpack .../032-g++-10_10.2.1-6_amd64.deb ... Unpacking g++-10 (10.2.1-6) ... Selecting previously unselected package g++. Preparing to unpack .../033-g++_4%3a10.2.1-1_amd64.deb ... Unpacking g++ (4:10.2.1-1) ... Selecting previously unselected package libdpkg-perl. Preparing to unpack .../034-libdpkg-perl_1.20.7.1_all.deb ... Unpacking libdpkg-perl (1.20.7.1) ... Selecting previously unselected package dpkg-dev. Preparing to unpack .../035-dpkg-dev_1.20.7.1_all.deb ... Unpacking dpkg-dev (1.20.7.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../036-build-essential_12.9_amd64.deb ... Unpacking build-essential (12.9) ... Selecting previously unselected package cmake-data. Preparing to unpack .../037-cmake-data_3.18.4-2_all.deb ... Unpacking cmake-data (3.18.4-2) ... Selecting previously unselected package libicu67:amd64. Preparing to unpack .../038-libicu67_67.1-6_amd64.deb ... Unpacking libicu67:amd64 (67.1-6) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../039-libxml2_2.9.10+dfsg-6.3+b1_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Selecting previously unselected package libarchive13:amd64. Preparing to unpack .../040-libarchive13_3.4.3-2_amd64.deb ... Unpacking libarchive13:amd64 (3.4.3-2) ... Selecting previously unselected package libbrotli1:amd64. Preparing to unpack .../041-libbrotli1_1.0.9-2+b2_amd64.deb ... Unpacking libbrotli1:amd64 (1.0.9-2+b2) ... Selecting previously unselected package libsasl2-modules-db:amd64. Preparing to unpack .../042-libsasl2-modules-db_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-modules-db:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libsasl2-2:amd64. Preparing to unpack .../043-libsasl2-2_2.1.27+dfsg-2.1_amd64.deb ... Unpacking libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Selecting previously unselected package libldap-2.4-2:amd64. Preparing to unpack .../044-libldap-2.4-2_2.4.57+dfsg-2_amd64.deb ... Unpacking libldap-2.4-2:amd64 (2.4.57+dfsg-2) ... Selecting previously unselected package libnghttp2-14:amd64. Preparing to unpack .../045-libnghttp2-14_1.43.0-1_amd64.deb ... Unpacking libnghttp2-14:amd64 (1.43.0-1) ... Selecting previously unselected package libpsl5:amd64. Preparing to unpack .../046-libpsl5_0.21.0-1.2_amd64.deb ... Unpacking libpsl5:amd64 (0.21.0-1.2) ... Selecting previously unselected package librtmp1:amd64. Preparing to unpack .../047-librtmp1_2.4+20151223.gitfa8646d.1-2+b2_amd64.deb ... Unpacking librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Selecting previously unselected package libssh2-1:amd64. Preparing to unpack .../048-libssh2-1_1.9.0-2_amd64.deb ... Unpacking libssh2-1:amd64 (1.9.0-2) ... Selecting previously unselected package libcurl4:amd64. Preparing to unpack .../049-libcurl4_7.74.0-1.1_amd64.deb ... Unpacking libcurl4:amd64 (7.74.0-1.1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../050-libexpat1_2.2.10-2_amd64.deb ... Unpacking libexpat1:amd64 (2.2.10-2) ... Selecting previously unselected package libjsoncpp24:amd64. Preparing to unpack .../051-libjsoncpp24_1.9.4-4_amd64.deb ... Unpacking libjsoncpp24:amd64 (1.9.4-4) ... Selecting previously unselected package librhash0:amd64. Preparing to unpack .../052-librhash0_1.4.1-1_amd64.deb ... Unpacking librhash0:amd64 (1.4.1-1) ... Selecting previously unselected package libuv1:amd64. Preparing to unpack .../053-libuv1_1.40.0-1_amd64.deb ... Unpacking libuv1:amd64 (1.40.0-1) ... Selecting previously unselected package cmake. Preparing to unpack .../054-cmake_3.18.4-2_amd64.deb ... Unpacking cmake (3.18.4-2) ... Selecting previously unselected package gcc-10-mipsel-linux-gnu-base:amd64. Preparing to unpack .../055-gcc-10-mipsel-linux-gnu-base_10.2.1-3cross1_amd64.deb ... Unpacking gcc-10-mipsel-linux-gnu-base:amd64 (10.2.1-3cross1) ... Selecting previously unselected package cpp-10-mipsel-linux-gnu. Preparing to unpack .../056-cpp-10-mipsel-linux-gnu_10.2.1-3cross1_amd64.deb ... Unpacking cpp-10-mipsel-linux-gnu (10.2.1-3cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../057-cpp-mipsel-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package cross-config. Preparing to unpack .../058-cross-config_2.6.16_all.deb ... Unpacking cross-config (2.6.16) ... Selecting previously unselected package gcc-10-cross-base-mipsen. Preparing to unpack .../059-gcc-10-cross-base-mipsen_10.2.1-3cross1_all.deb ... Unpacking gcc-10-cross-base-mipsen (10.2.1-3cross1) ... Selecting previously unselected package libc6-mipsel-cross. Preparing to unpack .../060-libc6-mipsel-cross_2.31-9cross1_all.deb ... Unpacking libc6-mipsel-cross (2.31-9cross1) ... Selecting previously unselected package libgcc-s1-mipsel-cross. Preparing to unpack .../061-libgcc-s1-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libgcc-s1-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package libgomp1-mipsel-cross. Preparing to unpack .../062-libgomp1-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libgomp1-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package libatomic1-mipsel-cross. Preparing to unpack .../063-libatomic1-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libatomic1-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package libgcc-10-dev-mipsel-cross. Preparing to unpack .../064-libgcc-10-dev-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libgcc-10-dev-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package gcc-10-mipsel-linux-gnu. Preparing to unpack .../065-gcc-10-mipsel-linux-gnu_10.2.1-3cross1_amd64.deb ... Unpacking gcc-10-mipsel-linux-gnu (10.2.1-3cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../066-gcc-mipsel-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../067-libstdc++6-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../068-linux-libc-dev-mipsel-cross_5.10.13-1cross1_all.deb ... Unpacking linux-libc-dev-mipsel-cross (5.10.13-1cross1) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../069-libc6-dev-mipsel-cross_2.31-9cross1_all.deb ... Unpacking libc6-dev-mipsel-cross (2.31-9cross1) ... Selecting previously unselected package libstdc++-10-dev-mipsel-cross. Preparing to unpack .../070-libstdc++-10-dev-mipsel-cross_10.2.1-3cross1_all.deb ... Unpacking libstdc++-10-dev-mipsel-cross (10.2.1-3cross1) ... Selecting previously unselected package g++-10-mipsel-linux-gnu. Preparing to unpack .../071-g++-10-mipsel-linux-gnu_10.2.1-3cross1_amd64.deb ... Unpacking g++-10-mipsel-linux-gnu (10.2.1-3cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../072-g++-mipsel-linux-gnu_4%3a10.2.0-1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:10.2.0-1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../073-libconfig-inifiles-perl_3.000003-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000003-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../074-libio-string-perl_1.08-3.1_all.deb ... Unpacking libio-string-perl (1.08-3.1) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../075-libxml-namespacesupport-perl_1.12-1.1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1.1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../076-libxml-sax-base-perl_1.09-1.1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1.1) ... Selecting previously unselected package libxml-sax-perl. Preparing to unpack .../077-libxml-sax-perl_1.02+dfsg-1_all.deb ... Unpacking libxml-sax-perl (1.02+dfsg-1) ... Selecting previously unselected package libxml-libxml-perl. Preparing to unpack .../078-libxml-libxml-perl_2.0134+dfsg-2+b1_amd64.deb ... Unpacking libxml-libxml-perl (2.0134+dfsg-2+b1) ... Selecting previously unselected package libxml-simple-perl. Preparing to unpack .../079-libxml-simple-perl_2.25-1_all.deb ... Unpacking libxml-simple-perl (2.25-1) ... Selecting previously unselected package libyaml-perl. Preparing to unpack .../080-libyaml-perl_1.30-1_all.deb ... Unpacking libyaml-perl (1.30-1) ... Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../081-libconfig-auto-perl_0.44-1.1_all.deb ... Unpacking libconfig-auto-perl (0.44-1.1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../082-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../083-libfile-homedir-perl_1.006-1_all.deb ... Unpacking libfile-homedir-perl (1.006-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../084-libdebian-dpkgcross-perl_2.6.16_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.16) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../085-dpkg-cross_2.6.16_all.deb ... Unpacking dpkg-cross (2.6.16) ... 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Setting up libuv1:amd64 (1.40.0-1) ... Setting up gcc-10-cross-base-mipsen (10.2.1-3cross1) ... Setting up librtmp1:amd64 (2.4+20151223.gitfa8646d.1-2+b2) ... Setting up binutils-mipsel-linux-gnu (2.35.1-6cross1) ... Setting up libncurses6:amd64 (6.2+20201114-2) ... Setting up libsigsegv2:amd64 (2.13-1) ... Setting up libgomp1-mipsel-cross (10.2.1-3cross1) ... Setting up autopoint (0.21-4) ... Setting up libperl5.32:amd64 (5.32.1-2) ... Setting up libsasl2-2:amd64 (2.1.27+dfsg-2.1) ... Setting up libjsoncpp24:amd64 (1.9.4-4) ... Setting up linux-libc-dev-mipsel-cross (5.10.13-1cross1) ... Setting up libnsl-dev:amd64 (1.3.0-2) ... Setting up sensible-utils (0.0.14) ... Setting up librhash0:amd64 (1.4.1-1) ... Setting up libcrypt-dev:amd64 (1:4.4.17-1) ... Setting up libuchardet0:amd64 (0.0.7-1) ... Setting up libc6-dev:amd64 (2.31-9) ... Setting up libssh2-1:amd64 (1.9.0-2) ... Setting up cmake-data (3.18.4-2) ... Setting up libelf1:amd64 (0.183-1) ... Setting up libxml2:amd64 (2.9.10+dfsg-6.3+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libprocps8:amd64 (2:3.3.17-4) ... Setting up gcc-9-base:mipsel (9.3.0-22) ... Setting up cpp-10-mipsel-linux-gnu (10.2.1-3cross1) ... Setting up gettext (0.21-4) ... Setting up libstdc++-10-dev:amd64 (10.2.1-6) ... Setting up g++-10 (10.2.1-6) ... Setting up libc6-dev-mipsel-cross (2.31-9cross1) ... Setting up libtool (2.4.6-15) ... Setting up libarchive13:amd64 (3.4.3-2) ... Setting up libgcc-s1-mipsel-cross (10.2.1-3cross1) ... Setting up libldap-2.4-2:amd64 (2.4.57+dfsg-2) ... Setting up m4 (1.4.18-5) ... Setting up libatomic1-mipsel-cross (10.2.1-3cross1) ... Setting up perl (5.32.1-2) ... Setting up libgcc-10-dev-mipsel-cross (10.2.1-3cross1) ... Setting up cpp-mipsel-linux-gnu (4:10.2.0-1) ... Setting up ucf (3.0043) ... Setting up libdpkg-perl (1.20.7.1) ... Setting up autoconf (2.69-14) ... Setting up g++ (4:10.2.1-1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13+20210201-1) ... Setting up groff-base (1.22.4-6) ... Setting up procps (2:3.3.17-4) ... Setting up libcurl4:amd64 (7.74.0-1.1) ... Setting up libsub-override-perl (0.09-2) ... Setting up automake (1:1.16.3-2) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-which-perl (1.23-1) ... Setting up gcc-10-mipsel-linux-gnu (10.2.1-3cross1) ... Setting up libstdc++6-mipsel-cross (10.2.1-3cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.3.3) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libyaml-perl (1.30-1) ... Setting up dpkg-dev (1.20.7.1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libstdc++-10-dev-mipsel-cross (10.2.1-3cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up gcc-mipsel-linux-gnu (4:10.2.0-1) ... Setting up cmake (3.18.4-2) ... Setting up build-essential (12.9) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up g++-10-mipsel-linux-gnu (10.2.1-3cross1) ... Setting up libfile-stripnondeterminism-perl (1.11.0-1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up g++-mipsel-linux-gnu (4:10.2.0-1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up dh-strip-nondeterminism (1.11.0-1) ... Setting up debhelper (13.3.3) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up libdebian-dpkgcross-perl (2.6.16) ... Setting up dpkg-cross (2.6.16) ... Setting up crossbuild-essential-mipsel (12.9) ... Setting up libcrypt1:mipsel (1:4.4.17-1) ... Setting up libgcc-s1:mipsel (10.2.1-6) ... Setting up libc6:mipsel (2.31-9) ... Setting up libcrypt-dev:mipsel (1:4.4.17-1) ... Setting up libbz2-1.0:mipsel (1.0.8-4) ... Setting up libstdc++6:mipsel (10.2.1-6) ... Setting up libzstd1:mipsel (1.4.8+dfsg-2) ... Setting up libkeyutils1:mipsel (1.6.1-2) ... Setting up libzstd-dev:mipsel (1.4.8+dfsg-2) ... Setting up libssl1.1:mipsel (1.1.1j-1) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libcom-err2:mipsel (1.46.1-1) ... Setting up libgomp1:mipsel (10.2.1-6) ... Setting up libkrb5support0:mipsel (1.18.3-4) ... Setting up libatomic1:mipsel (10.2.1-6) ... Setting up libk5crypto3:mipsel (1.18.3-4) ... Setting up libgzstream0:mipsel (1.5+dfsg-5) ... Setting up libkrb5-3:mipsel (1.18.3-4) ... Setting up libgzstream-dev:mipsel (1.5+dfsg-5) ... Setting up libgcc-9-dev:mipsel (9.3.0-22) ... Setting up libgssapi-krb5-2:mipsel (1.18.3-4) ... Setting up libtirpc3:mipsel (1.3.1-1) ... Setting up libtirpc-dev:mipsel (1.3.1-1) ... Setting up libnsl2:mipsel (1.3.0-2) ... Setting up libnsl-dev:mipsel (1.3.0-2) ... Setting up libc6-dev:mipsel (2.31-9) ... Setting up libbz2-dev:mipsel (1.0.8-4) ... Setting up libstdc++-9-dev:mipsel (9.3.0-22) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.31-9) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in amd64 arm64 armel armhf i386 mips64el mipsel ppc64el alpha ia64 kfreebsd-amd64 kfreebsd-i386 riscv64 sh4 x32 all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-14-amd64 #1 SMP Debian 4.19.171-2 (2021-01-30) amd64 (x86_64) Toolchain package versions: binutils_2.35.2-2 dpkg-dev_1.20.7.1 g++-10_10.2.1-6 gcc-10_10.2.1-6 libc6-dev_2.31-9 libstdc++-10-dev_10.2.1-6 libstdc++-10-dev-mipsel-cross_10.2.1-3cross1 libstdc++-9-dev_9.3.0-22 libstdc++6_10.2.1-6 libstdc++6-mipsel-cross_10.2.1-3cross1 linux-libc-dev_5.10.13-1 Package versions: adduser_3.118 apt_2.2.0 autoconf_2.69-14 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sh4 x32 all Version: 12-113e3+ds-3 Maintainer: Debian Med Packaging Team Uploaders: Shayan Doust Homepage: https://github.com/soedinglab/MMseqs2 Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mmseqs2 Vcs-Git: https://salsa.debian.org/med-team/mmseqs2.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13) Build-Depends-Arch: cmake, libgzstream-dev, libzstd-dev, zlib1g-dev, libbz2-dev, libsimde-dev Package-List: mmseqs2 deb science optional arch=amd64,arm64,armel,armhf,i386,mips64el,mipsel,ppc64el,alpha,ia64,kfreebsd-amd64,kfreebsd-i386,riscv64,sh4,x32 mmseqs2-examples deb science optional arch=all Checksums-Sha1: 7b71b24b6e0e8bb82e5bdc228bd907b9ba202a5a 4503844 mmseqs2_12-113e3+ds.orig.tar.xz 41e7e2a497f61e278c4afffd1208c8804987097d 6552572 mmseqs2_12-113e3+ds-3.debian.tar.xz Checksums-Sha256: d4ade263b54c536a7770f260f6a87baecf6c7f4810672341c69e4a71e5dfef0e 4503844 mmseqs2_12-113e3+ds.orig.tar.xz 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info: applying use_system_gzstream.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-54ccb28c-03ed-47a6-bd55-274c5a253246 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package mmseqs2 dpkg-buildpackage: info: source version 12-113e3+ds-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed 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-I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_random.cpp.o -c /<>/lib/alp/njn_random.cpp [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogprobproto.cpp.o -c /<>/lib/alp/njn_dynprogprobproto.cpp [ 4%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstat.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstat.cpp.o -c /<>/lib/alp/njn_localmaxstat.cpp [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatmatrix.cpp.o -c /<>/lib/alp/njn_localmaxstatmatrix.cpp [ 5%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_sim.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_sim.cpp.o -c /<>/lib/alp/sls_alp_sim.cpp [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_pvalues.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_pvalues.cpp.o -c /<>/lib/alp/sls_pvalues.cpp [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_dynprogproblim.cpp.o -c /<>/lib/alp/njn_dynprogproblim.cpp [ 6%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alignment_evaluer.cpp.o -c /<>/lib/alp/sls_alignment_evaluer.cpp [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_regression.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_regression.cpp.o -c /<>/lib/alp/sls_alp_regression.cpp [ 7%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp.cpp.o -c /<>/lib/alp/sls_alp.cpp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_localmaxstatutil.cpp.o -c /<>/lib/alp/njn_localmaxstatutil.cpp [ 8%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_basic.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_basic.cpp.o -c /<>/lib/alp/sls_basic.cpp [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/sls_alp_data.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/sls_alp_data.cpp.o -c /<>/lib/alp/sls_alp_data.cpp [ 9%] Building CXX object lib/alp/CMakeFiles/alp.dir/njn_ioutil.cpp.o cd /<>/obj-mipsel-linux-gnu/lib/alp && /usr/bin/mipsel-linux-gnu-g++ -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -w -o CMakeFiles/alp.dir/njn_ioutil.cpp.o -c /<>/lib/alp/njn_ioutil.cpp make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 9%] Built target alp make -f lib/ksw2/CMakeFiles/ksw2.dir/build.make 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Dependee "/<>/obj-mipsel-linux-gnu/data/CMakeFiles/CMakeDirectoryInformation.cmake" is newer than depender "/<>/obj-mipsel-linux-gnu/data/CMakeFiles/generated.dir/depend.internal". Scanning dependencies of target generated make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f data/CMakeFiles/generated.dir/build.make data/CMakeFiles/generated.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 9%] Generating ../generated/VTML80.out.h cd /<>/data && /<>/cmake/checkshell.sh true VTML80.out cd /<>/data && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data && /<>/cmake/xxdi.pl VTML80.out > /<>/obj-mipsel-linux-gnu/generated/VTML80.out.h cd /<>/data && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/VTML80.out.h > /<>/obj-mipsel-linux-gnu/generated/VTML80.out.h.tmp cd /<>/data && mv -f /<>/obj-mipsel-linux-gnu/generated/VTML80.out.h.tmp /<>/obj-mipsel-linux-gnu/generated/VTML80.out.h [ 10%] Generating ../generated/VTML40.out.h cd /<>/data && /<>/cmake/checkshell.sh true VTML40.out cd /<>/data && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data && /<>/cmake/xxdi.pl VTML40.out > /<>/obj-mipsel-linux-gnu/generated/VTML40.out.h cd /<>/data && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/VTML40.out.h > /<>/obj-mipsel-linux-gnu/generated/VTML40.out.h.tmp cd /<>/data && mv -f /<>/obj-mipsel-linux-gnu/generated/VTML40.out.h.tmp /<>/obj-mipsel-linux-gnu/generated/VTML40.out.h [ 10%] Generating ../generated/nucleotide.out.h cd /<>/data && /<>/cmake/checkshell.sh true nucleotide.out cd /<>/data && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data && /<>/cmake/xxdi.pl nucleotide.out > /<>/obj-mipsel-linux-gnu/generated/nucleotide.out.h cd /<>/data && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/nucleotide.out.h > /<>/obj-mipsel-linux-gnu/generated/nucleotide.out.h.tmp cd /<>/data && mv -f /<>/obj-mipsel-linux-gnu/generated/nucleotide.out.h.tmp /<>/obj-mipsel-linux-gnu/generated/nucleotide.out.h [ 11%] Generating ../generated/blosum62.out.h cd /<>/data && /<>/cmake/checkshell.sh true blosum62.out cd /<>/data && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data && /<>/cmake/xxdi.pl blosum62.out > /<>/obj-mipsel-linux-gnu/generated/blosum62.out.h cd /<>/data && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/blosum62.out.h > /<>/obj-mipsel-linux-gnu/generated/blosum62.out.h.tmp cd /<>/data && mv -f /<>/obj-mipsel-linux-gnu/generated/blosum62.out.h.tmp /<>/obj-mipsel-linux-gnu/generated/blosum62.out.h [ 11%] Generating ../generated/PAM30.out.h cd /<>/data && /<>/cmake/checkshell.sh true PAM30.out cd /<>/data && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data && /<>/cmake/xxdi.pl PAM30.out > /<>/obj-mipsel-linux-gnu/generated/PAM30.out.h cd /<>/data && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/PAM30.out.h > /<>/obj-mipsel-linux-gnu/generated/PAM30.out.h.tmp cd /<>/data && mv -f /<>/obj-mipsel-linux-gnu/generated/PAM30.out.h.tmp /<>/obj-mipsel-linux-gnu/generated/PAM30.out.h [ 12%] Generating ../generated/CovSeqidQscPercMinDiag.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true CovSeqidQscPercMinDiag.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl CovSeqidQscPercMinDiag.lib > /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h > /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiag.lib.h [ 12%] Generating ../generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true CovSeqidQscPercMinDiagTargetCov.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl CovSeqidQscPercMinDiagTargetCov.lib > /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h > /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/CovSeqidQscPercMinDiagTargetCov.lib.h [ 12%] Generating ../generated/ExpOpt3_8_polished.cs32.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true ExpOpt3_8_polished.cs32.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl ExpOpt3_8_polished.cs32.lib > /<>/obj-mipsel-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h > /<>/obj-mipsel-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/ExpOpt3_8_polished.cs32.lib.h [ 13%] Generating ../generated/Library255_may17.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true Library255_may17.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl Library255_may17.lib > /<>/obj-mipsel-linux-gnu/generated/Library255_may17.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/Library255_may17.lib.h > /<>/obj-mipsel-linux-gnu/generated/Library255_may17.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/Library255_may17.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/Library255_may17.lib.h [ 13%] Generating ../generated/libPolished_8.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true libPolished_8.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl libPolished_8.lib > /<>/obj-mipsel-linux-gnu/generated/libPolished_8.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/libPolished_8.lib.h > /<>/obj-mipsel-linux-gnu/generated/libPolished_8.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/libPolished_8.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/libPolished_8.lib.h [ 14%] Generating ../generated/cs219.lib.h cd /<>/data/resources && /<>/cmake/checkshell.sh true cs219.lib cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl cs219.lib > /<>/obj-mipsel-linux-gnu/generated/cs219.lib.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/cs219.lib.h > /<>/obj-mipsel-linux-gnu/generated/cs219.lib.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/cs219.lib.h.tmp /<>/obj-mipsel-linux-gnu/generated/cs219.lib.h [ 14%] Generating ../generated/krona_prelude.html.h cd /<>/data/resources && /<>/cmake/checkshell.sh true krona_prelude.html cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl krona_prelude.html > /<>/obj-mipsel-linux-gnu/generated/krona_prelude.html.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/krona_prelude.html.h > /<>/obj-mipsel-linux-gnu/generated/krona_prelude.html.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/krona_prelude.html.h.tmp /<>/obj-mipsel-linux-gnu/generated/krona_prelude.html.h [ 15%] Generating ../generated/result_viz_prelude.html.zst.h cd /<>/data/resources && /<>/cmake/checkshell.sh true result_viz_prelude.html.zst cd /<>/data/resources && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/resources && /<>/cmake/xxdi.pl result_viz_prelude.html.zst > /<>/obj-mipsel-linux-gnu/generated/result_viz_prelude.html.zst.h cd /<>/data/resources && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/result_viz_prelude.html.zst.h > /<>/obj-mipsel-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp cd /<>/data/resources && mv -f /<>/obj-mipsel-linux-gnu/generated/result_viz_prelude.html.zst.h.tmp /<>/obj-mipsel-linux-gnu/generated/result_viz_prelude.html.zst.h [ 15%] Generating ../generated/easysearch.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true easysearch.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl easysearch.sh > /<>/obj-mipsel-linux-gnu/generated/easysearch.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/easysearch.sh.h > /<>/obj-mipsel-linux-gnu/generated/easysearch.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/easysearch.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/easysearch.sh.h [ 15%] Generating ../generated/easycluster.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true easycluster.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl easycluster.sh > /<>/obj-mipsel-linux-gnu/generated/easycluster.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/easycluster.sh.h > /<>/obj-mipsel-linux-gnu/generated/easycluster.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/easycluster.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/easycluster.sh.h [ 16%] Generating ../generated/easytaxonomy.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true easytaxonomy.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl easytaxonomy.sh > /<>/obj-mipsel-linux-gnu/generated/easytaxonomy.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/easytaxonomy.sh.h > /<>/obj-mipsel-linux-gnu/generated/easytaxonomy.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/easytaxonomy.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/easytaxonomy.sh.h [ 16%] Generating ../generated/easyrbh.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true easyrbh.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl easyrbh.sh > /<>/obj-mipsel-linux-gnu/generated/easyrbh.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/easyrbh.sh.h > /<>/obj-mipsel-linux-gnu/generated/easyrbh.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/easyrbh.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/easyrbh.sh.h [ 17%] Generating ../generated/blastp.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true blastp.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl blastp.sh > /<>/obj-mipsel-linux-gnu/generated/blastp.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/blastp.sh.h > /<>/obj-mipsel-linux-gnu/generated/blastp.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/blastp.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/blastp.sh.h [ 17%] Generating ../generated/blastpgp.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true blastpgp.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl blastpgp.sh > /<>/obj-mipsel-linux-gnu/generated/blastpgp.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/blastpgp.sh.h > /<>/obj-mipsel-linux-gnu/generated/blastpgp.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/blastpgp.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/blastpgp.sh.h [ 18%] Generating ../generated/map.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true map.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl map.sh > /<>/obj-mipsel-linux-gnu/generated/map.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/map.sh.h > /<>/obj-mipsel-linux-gnu/generated/map.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/map.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/map.sh.h [ 18%] Generating ../generated/rbh.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true rbh.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl rbh.sh > /<>/obj-mipsel-linux-gnu/generated/rbh.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/rbh.sh.h > /<>/obj-mipsel-linux-gnu/generated/rbh.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/rbh.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/rbh.sh.h [ 19%] Generating ../generated/linclust.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true linclust.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl linclust.sh > /<>/obj-mipsel-linux-gnu/generated/linclust.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/linclust.sh.h > /<>/obj-mipsel-linux-gnu/generated/linclust.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/linclust.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/linclust.sh.h [ 19%] Generating ../generated/clustering.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true clustering.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl clustering.sh > /<>/obj-mipsel-linux-gnu/generated/clustering.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/clustering.sh.h > /<>/obj-mipsel-linux-gnu/generated/clustering.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/clustering.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/clustering.sh.h [ 19%] Generating ../generated/cascaded_clustering.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true cascaded_clustering.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl cascaded_clustering.sh > /<>/obj-mipsel-linux-gnu/generated/cascaded_clustering.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/cascaded_clustering.sh.h > /<>/obj-mipsel-linux-gnu/generated/cascaded_clustering.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/cascaded_clustering.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/cascaded_clustering.sh.h [ 20%] Generating ../generated/update_clustering.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true update_clustering.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl update_clustering.sh > /<>/obj-mipsel-linux-gnu/generated/update_clustering.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/update_clustering.sh.h > /<>/obj-mipsel-linux-gnu/generated/update_clustering.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/update_clustering.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/update_clustering.sh.h [ 20%] Generating ../generated/searchtargetprofile.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true searchtargetprofile.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl searchtargetprofile.sh > /<>/obj-mipsel-linux-gnu/generated/searchtargetprofile.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/searchtargetprofile.sh.h > /<>/obj-mipsel-linux-gnu/generated/searchtargetprofile.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/searchtargetprofile.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/searchtargetprofile.sh.h [ 21%] Generating ../generated/createindex.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true createindex.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl createindex.sh > /<>/obj-mipsel-linux-gnu/generated/createindex.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/createindex.sh.h > /<>/obj-mipsel-linux-gnu/generated/createindex.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/createindex.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/createindex.sh.h [ 21%] Generating ../generated/createtaxdb.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true createtaxdb.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl createtaxdb.sh > /<>/obj-mipsel-linux-gnu/generated/createtaxdb.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/createtaxdb.sh.h > /<>/obj-mipsel-linux-gnu/generated/createtaxdb.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/createtaxdb.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/createtaxdb.sh.h [ 22%] Generating ../generated/translated_search.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true translated_search.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl translated_search.sh > /<>/obj-mipsel-linux-gnu/generated/translated_search.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/translated_search.sh.h > /<>/obj-mipsel-linux-gnu/generated/translated_search.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/translated_search.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/translated_search.sh.h [ 22%] Generating ../generated/taxonomy.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true taxonomy.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl taxonomy.sh > /<>/obj-mipsel-linux-gnu/generated/taxonomy.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/taxonomy.sh.h > /<>/obj-mipsel-linux-gnu/generated/taxonomy.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/taxonomy.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/taxonomy.sh.h [ 23%] Generating ../generated/taxpercontig.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true taxpercontig.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl taxpercontig.sh > /<>/obj-mipsel-linux-gnu/generated/taxpercontig.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/taxpercontig.sh.h > /<>/obj-mipsel-linux-gnu/generated/taxpercontig.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/taxpercontig.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/taxpercontig.sh.h [ 23%] Generating ../generated/multihitdb.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true multihitdb.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl multihitdb.sh > /<>/obj-mipsel-linux-gnu/generated/multihitdb.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/multihitdb.sh.h > /<>/obj-mipsel-linux-gnu/generated/multihitdb.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/multihitdb.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/multihitdb.sh.h [ 23%] Generating ../generated/multihitsearch.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true multihitsearch.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl multihitsearch.sh > /<>/obj-mipsel-linux-gnu/generated/multihitsearch.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/multihitsearch.sh.h > /<>/obj-mipsel-linux-gnu/generated/multihitsearch.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/multihitsearch.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/multihitsearch.sh.h [ 24%] Generating ../generated/enrich.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true enrich.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl enrich.sh > /<>/obj-mipsel-linux-gnu/generated/enrich.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/enrich.sh.h > /<>/obj-mipsel-linux-gnu/generated/enrich.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/enrich.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/enrich.sh.h [ 24%] Generating ../generated/blastn.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true blastn.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl blastn.sh > /<>/obj-mipsel-linux-gnu/generated/blastn.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/blastn.sh.h > /<>/obj-mipsel-linux-gnu/generated/blastn.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/blastn.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/blastn.sh.h [ 25%] Generating ../generated/searchslicedtargetprofile.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true searchslicedtargetprofile.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl searchslicedtargetprofile.sh > /<>/obj-mipsel-linux-gnu/generated/searchslicedtargetprofile.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/searchslicedtargetprofile.sh.h > /<>/obj-mipsel-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/searchslicedtargetprofile.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/searchslicedtargetprofile.sh.h [ 25%] Generating ../generated/linsearch.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true linsearch.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl linsearch.sh > /<>/obj-mipsel-linux-gnu/generated/linsearch.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/linsearch.sh.h > /<>/obj-mipsel-linux-gnu/generated/linsearch.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/linsearch.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/linsearch.sh.h [ 26%] Generating ../generated/databases.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true databases.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl databases.sh > /<>/obj-mipsel-linux-gnu/generated/databases.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/databases.sh.h > /<>/obj-mipsel-linux-gnu/generated/databases.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/databases.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/databases.sh.h [ 26%] Generating ../generated/nucleotide_clustering.sh.h cd /<>/data/workflow && /<>/cmake/checkshell.sh true nucleotide_clustering.sh cd /<>/data/workflow && mkdir -p /<>/obj-mipsel-linux-gnu/generated cd /<>/data/workflow && /<>/cmake/xxdi.pl nucleotide_clustering.sh > /<>/obj-mipsel-linux-gnu/generated/nucleotide_clustering.sh.h cd /<>/data/workflow && /bin/sed 's!unsigned char!static const unsigned char!' < /<>/obj-mipsel-linux-gnu/generated/nucleotide_clustering.sh.h > /<>/obj-mipsel-linux-gnu/generated/nucleotide_clustering.sh.h.tmp cd /<>/data/workflow && mv -f /<>/obj-mipsel-linux-gnu/generated/nucleotide_clustering.sh.h.tmp /<>/obj-mipsel-linux-gnu/generated/nucleotide_clustering.sh.h make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 26%] Built target generated make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src/version /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src/version /<>/obj-mipsel-linux-gnu/src/version/CMakeFiles/version.dir/DependInfo.cmake --color= Dependee "/<>/obj-mipsel-linux-gnu/src/version/CMakeFiles/version.dir/DependInfo.cmake" is newer than depender "/<>/obj-mipsel-linux-gnu/src/version/CMakeFiles/version.dir/depend.internal". 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Scanning dependencies of target version make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/version/CMakeFiles/version.dir/build.make src/version/CMakeFiles/version.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 26%] Building CXX object src/version/CMakeFiles/version.dir/Version.cpp.o cd /<>/obj-mipsel-linux-gnu/src/version && /usr/bin/mipsel-linux-gnu-g++ -DGIT_SHA1=12-113e3+ds-3 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -o CMakeFiles/version.dir/Version.cpp.o -c /<>/src/version/Version.cpp [ 27%] Linking CXX static library libversion.a cd /<>/obj-mipsel-linux-gnu/src/version && /usr/bin/cmake -P CMakeFiles/version.dir/cmake_clean_target.cmake cd /<>/obj-mipsel-linux-gnu/src/version && /usr/bin/cmake -E cmake_link_script CMakeFiles/version.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-ar qc libversion.a CMakeFiles/version.dir/Version.cpp.o /usr/bin/mipsel-linux-gnu-ranlib libversion.a make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 27%] Built target version make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/lib/tinyexpr /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/lib/tinyexpr /<>/obj-mipsel-linux-gnu/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake --color= Dependee "/<>/obj-mipsel-linux-gnu/lib/tinyexpr/CMakeFiles/tinyexpr.dir/DependInfo.cmake" is newer than depender "/<>/obj-mipsel-linux-gnu/lib/tinyexpr/CMakeFiles/tinyexpr.dir/depend.internal". 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Scanning dependencies of target tinyexpr make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f lib/tinyexpr/CMakeFiles/tinyexpr.dir/build.make lib/tinyexpr/CMakeFiles/tinyexpr.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 27%] Building C object lib/tinyexpr/CMakeFiles/tinyexpr.dir/tinyexpr.c.o cd /<>/obj-mipsel-linux-gnu/lib/tinyexpr && /usr/bin/mipsel-linux-gnu-gcc -I/<>/lib/tinyexpr -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -ansi -Wall -Wshadow -fPIC -O3 -o CMakeFiles/tinyexpr.dir/tinyexpr.c.o -c /<>/lib/tinyexpr/tinyexpr.c [ 28%] Linking C static library libtinyexpr.a cd /<>/obj-mipsel-linux-gnu/lib/tinyexpr && /usr/bin/cmake -P CMakeFiles/tinyexpr.dir/cmake_clean_target.cmake cd /<>/obj-mipsel-linux-gnu/lib/tinyexpr && /usr/bin/cmake -E cmake_link_script CMakeFiles/tinyexpr.dir/link.txt --verbose=1 /usr/bin/mipsel-linux-gnu-ar qc libtinyexpr.a CMakeFiles/tinyexpr.dir/tinyexpr.c.o /usr/bin/mipsel-linux-gnu-ranlib libtinyexpr.a make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' [ 28%] Built target tinyexpr make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/depend make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' cd /<>/obj-mipsel-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/src /<>/obj-mipsel-linux-gnu /<>/obj-mipsel-linux-gnu/src /<>/obj-mipsel-linux-gnu/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake --color= Dependee "/<>/obj-mipsel-linux-gnu/src/CMakeFiles/mmseqs-framework.dir/DependInfo.cmake" is newer than depender "/<>/obj-mipsel-linux-gnu/src/CMakeFiles/mmseqs-framework.dir/depend.internal". 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Scanning dependencies of target mmseqs-framework make[4]: Leaving directory '/<>/obj-mipsel-linux-gnu' make -f src/CMakeFiles/mmseqs-framework.dir/build.make src/CMakeFiles/mmseqs-framework.dir/build make[4]: Entering directory '/<>/obj-mipsel-linux-gnu' [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Alignment.cpp.o -c /<>/src/alignment/Alignment.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/alignment/Alignment.cpp:2: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/alignment/Alignment.cpp:2: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 29%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/CompressedA3M.cpp.o -c /<>/src/alignment/CompressedA3M.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Main.cpp.o -c /<>/src/alignment/Main.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/alignment/Alignment.h:6, from /<>/src/alignment/Main.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/Matcher.cpp.o -c /<>/src/alignment/Matcher.cpp [ 30%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MsaFilter.cpp.o -c /<>/src/alignment/MsaFilter.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/MultipleAlignment.cpp.o -c /<>/src/alignment/MultipleAlignment.cpp [ 31%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/PSSMCalculator.cpp.o -c /<>/src/alignment/PSSMCalculator.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/StripedSmithWaterman.cpp.o -c /<>/src/alignment/StripedSmithWaterman.cpp [ 32%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/BandedNucleotideAligner.cpp.o -c /<>/src/alignment/BandedNucleotideAligner.cpp [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/alignment/rescorediagonal.cpp.o -c /<>/src/alignment/rescorediagonal.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/alignment/rescorediagonal.cpp:8: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/alignment/rescorediagonal.cpp:8: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 33%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Main.cpp.o -c /<>/src/clustering/Main.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/AlignmentSymmetry.cpp.o -c /<>/src/clustering/AlignmentSymmetry.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/Clustering.cpp.o -c /<>/src/clustering/Clustering.cpp [ 34%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/clustering/ClusteringAlgorithms.cpp.o -c /<>/src/clustering/ClusteringAlgorithms.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/A3MReader.cpp.o -c /<>/src/commons/A3MReader.cpp [ 35%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Application.cpp.o -c /<>/src/commons/Application.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/BaseMatrix.cpp.o -c /<>/src/commons/BaseMatrix.cpp [ 36%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Command.cpp.o -c /<>/src/commons/Command.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/CommandCaller.cpp.o -c /<>/src/commons/CommandCaller.cpp [ 37%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBConcat.cpp.o -c /<>/src/commons/DBConcat.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBReader.cpp.o -c /<>/src/commons/DBReader.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/DBWriter.cpp.o -c /<>/src/commons/DBWriter.cpp [ 38%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Debug.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization 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CMakeFiles/mmseqs-framework.dir/commons/ExpressionParser.cpp.o -c /<>/src/commons/ExpressionParser.cpp [ 39%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/FileUtil.cpp.o -c /<>/src/commons/FileUtil.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/HeaderSummarizer.cpp.o -c /<>/src/commons/HeaderSummarizer.cpp [ 40%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/KSeqWrapper.cpp.o -c /<>/src/commons/KSeqWrapper.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryMapped.cpp.o -c /<>/src/commons/MemoryMapped.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MemoryTracker.cpp.o -c /<>/src/commons/MemoryTracker.cpp [ 41%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MMseqsMPI.cpp.o -c /<>/src/commons/MMseqsMPI.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/MultiParam.cpp.o -c /<>/src/commons/MultiParam.cpp [ 42%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/NucleotideMatrix.cpp.o -c /<>/src/commons/NucleotideMatrix.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Orf.cpp.o -c /<>/src/commons/Orf.cpp [ 43%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Parameters.cpp.o -c /<>/src/commons/Parameters.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/ProfileStates.cpp.o -c /<>/src/commons/ProfileStates.cpp [ 44%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/LibraryReader.cpp.o -c /<>/src/commons/LibraryReader.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Sequence.cpp.o -c /<>/src/commons/Sequence.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/SubstitutionMatrix.cpp.o -c /<>/src/commons/SubstitutionMatrix.cpp [ 45%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/tantan.cpp.o -c /<>/src/commons/tantan.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/UniprotKB.cpp.o -c /<>/src/commons/UniprotKB.cpp [ 46%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/commons/Util.cpp.o -c /<>/src/commons/Util.cpp [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/CacheFriendlyOperations.cpp.o -c /<>/src/prefiltering/CacheFriendlyOperations.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/CacheFriendlyOperations.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/CacheFriendlyOperations.cpp:1: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2048>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:343:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<1024>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:344:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<512>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:345:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<256>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:346:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<128>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:347:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<64>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:348:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<32>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:349:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<16>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:350:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<8>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:351:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<4>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:352:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h: In instantiation of ‘const unsigned int CacheFriendlyOperations<2>::MASK_0_5_BIT’: /<>/src/prefiltering/CacheFriendlyOperations.cpp:353:16: required from here /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ~~~~~^~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 47%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ExtendedSubstitutionMatrix.cpp.o -c /<>/src/prefiltering/ExtendedSubstitutionMatrix.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Indexer.cpp.o -c /<>/src/prefiltering/Indexer.cpp [ 48%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/IndexBuilder.cpp.o -c /<>/src/prefiltering/IndexBuilder.cpp In file included from /<>/src/prefiltering/IndexBuilder.h:4, from /<>/src/prefiltering/IndexBuilder.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/KmerGenerator.cpp.o -c /<>/src/prefiltering/KmerGenerator.cpp [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Main.cpp.o -c /<>/src/prefiltering/Main.cpp In file included from /<>/src/prefiltering/Prefiltering.h:6, from /<>/src/prefiltering/Main.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/Prefiltering.h:10, from /<>/src/prefiltering/Main.cpp:1: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 49%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/Prefiltering.cpp.o -c /<>/src/prefiltering/Prefiltering.cpp In file included from /<>/src/prefiltering/Prefiltering.h:6, from /<>/src/prefiltering/Prefiltering.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/Prefiltering.h:10, from /<>/src/prefiltering/Prefiltering.cpp:1: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/PrefilteringIndexReader.cpp.o -c /<>/src/prefiltering/PrefilteringIndexReader.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/prefiltering/PrefilteringIndexReader.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/Prefiltering.h:10, from /<>/src/prefiltering/PrefilteringIndexReader.cpp:3: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 50%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/QueryMatcher.cpp.o -c /<>/src/prefiltering/QueryMatcher.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/QueryMatcher.cpp:2: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/QueryMatcher.cpp:2: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ReducedMatrix.cpp.o -c /<>/src/prefiltering/ReducedMatrix.cpp [ 51%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/SequenceLookup.cpp.o -c /<>/src/prefiltering/SequenceLookup.cpp [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/UngappedAlignment.cpp.o -c /<>/src/prefiltering/UngappedAlignment.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/UngappedAlignment.h:10, from /<>/src/prefiltering/UngappedAlignment.cpp:4: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/UngappedAlignment.h:10, from /<>/src/prefiltering/UngappedAlignment.cpp:4: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/prefiltering/ungappedprefilter.cpp.o -c /<>/src/prefiltering/ungappedprefilter.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/ungappedprefilter.cpp:12: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/ungappedprefilter.cpp:12: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 52%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/besthitperset.cpp.o -c /<>/src/multihit/besthitperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/combinepvalperset.cpp.o -c /<>/src/multihit/combinepvalperset.cpp [ 53%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/Aggregation.cpp.o -c /<>/src/multihit/Aggregation.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitDb.cpp.o -c /<>/src/multihit/MultiHitDb.cpp [ 54%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/multihit/MultiHitSearch.cpp.o -c /<>/src/multihit/MultiHitSearch.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/lca.cpp.o -c /<>/src/taxonomy/lca.cpp [ 55%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/addtaxonomy.cpp.o -c /<>/src/taxonomy/addtaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/NcbiTaxonomy.cpp.o -c /<>/src/taxonomy/NcbiTaxonomy.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxdb.cpp.o -c /<>/src/taxonomy/filtertaxdb.cpp [ 56%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/filtertaxseqdb.cpp.o -c /<>/src/taxonomy/filtertaxseqdb.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/aggregatetax.cpp.o -c /<>/src/taxonomy/aggregatetax.cpp [ 57%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/createtaxdb.cpp.o -c /<>/src/taxonomy/createtaxdb.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/taxonomy/taxonomyreport.cpp.o -c /<>/src/taxonomy/taxonomyreport.cpp [ 58%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmermatcher.cpp.o -c /<>/src/linclust/kmermatcher.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/linclust/kmermatcher.cpp:15: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/linclust/kmermatcher.cpp:15: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmerindexdb.cpp.o -c /<>/src/linclust/kmerindexdb.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/linclust/kmerindexdb.cpp:3: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 59%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/kmersearch.cpp.o -c /<>/src/linclust/kmersearch.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/linclust/kmersearch.cpp:5: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/linclust/kmersearch.cpp:5: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/linclust/LinsearchIndexReader.cpp.o -c /<>/src/linclust/LinsearchIndexReader.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/linclust/LinsearchIndexReader.cpp:6: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignall.cpp.o -c /<>/src/util/alignall.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/alignment/Alignment.h:6, from /<>/src/util/alignall.cpp:9: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 60%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/alignbykmer.cpp.o -c /<>/src/util/alignbykmer.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/alignbykmer.cpp:8: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/alignbykmer.cpp:8: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/apply.cpp.o -c /<>/src/util/apply.cpp [ 61%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/clusthash.cpp.o -c /<>/src/util/clusthash.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/compress.cpp.o -c /<>/src/util/compress.cpp [ 62%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convert2fasta.cpp.o -c /<>/src/util/convert2fasta.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertalignments.cpp.o -c /<>/src/util/convertalignments.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/convertalignments.cpp:7: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertca3m.cpp.o -c /<>/src/util/convertca3m.cpp [ 63%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertkb.cpp.o -c /<>/src/util/convertkb.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertmsa.cpp.o -c /<>/src/util/convertmsa.cpp [ 64%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/convertprofiledb.cpp.o -c /<>/src/util/convertprofiledb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createdb.cpp.o -c /<>/src/util/createdb.cpp [ 65%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/dbtype.cpp.o -c /<>/src/util/dbtype.cpp [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/indexdb.cpp.o -c /<>/src/util/indexdb.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/util/indexdb.cpp:4: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/prefiltering/Prefiltering.h:10, from /<>/src/util/indexdb.cpp:5: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 66%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/offsetalignment.cpp.o -c /<>/src/util/offsetalignment.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/offsetalignment.cpp:10: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createseqfiledb.cpp.o -c /<>/src/util/createseqfiledb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createsubdb.cpp.o -c /<>/src/util/createsubdb.cpp [ 67%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/view.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/view.cpp.o -c /<>/src/util/view.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/view.cpp:2: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/createtsv.cpp.o -c /<>/src/util/createtsv.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/createtsv.cpp:6: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 68%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diffseqdbs.cpp.o -c /<>/src/util/diffseqdbs.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/expandaln.cpp.o -c /<>/src/util/expandaln.cpp [ 69%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractalignedregion.cpp.o -c /<>/src/util/extractalignedregion.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractdomains.cpp.o -c /<>/src/util/extractdomains.cpp [ 70%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractorfs.cpp.o -c /<>/src/util/extractorfs.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/orftocontig.cpp.o -c /<>/src/util/orftocontig.cpp [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/touchdb.cpp.o -c /<>/src/util/touchdb.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/util/touchdb.cpp:3: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 71%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/filterdb.cpp.o -c /<>/src/util/filterdb.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/gff2db.cpp.o -c /<>/src/util/gff2db.cpp [ 72%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/renamedbkeys.cpp.o -c /<>/src/util/renamedbkeys.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/masksequence.cpp.o -c /<>/src/util/masksequence.cpp [ 73%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/maskbygff.cpp.o -c /<>/src/util/maskbygff.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeclusters.cpp.o -c /<>/src/util/mergeclusters.cpp [ 74%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergeresultsbyset.cpp.o -c /<>/src/util/mergeresultsbyset.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mergedbs.cpp.o -c /<>/src/util/mergedbs.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/mergedbs.cpp:1: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2profile.cpp.o -c /<>/src/util/msa2profile.cpp [ 75%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/msa2result.cpp.o -c /<>/src/util/msa2result.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/mvdb.cpp.o -c /<>/src/util/mvdb.cpp [ 76%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/countkmer.cpp.o -c /<>/src/util/countkmer.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/countkmer.cpp:7: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/prefixid.cpp.o -c /<>/src/util/prefixid.cpp [ 77%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2cs.cpp.o -c /<>/src/util/profile2cs.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2pssm.cpp.o -c /<>/src/util/profile2pssm.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/profile2seq.cpp.o -c /<>/src/util/profile2seq.cpp [ 78%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2dnamsa.cpp.o -c /<>/src/util/result2dnamsa.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2flat.cpp.o -c /<>/src/util/result2flat.cpp [ 79%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2msa.cpp.o -c /<>/src/util/result2msa.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2rbh.cpp.o -c /<>/src/util/result2rbh.cpp [ 80%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2profile.cpp.o -c /<>/src/util/result2profile.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/util/result2profile.cpp:11: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2pp.cpp.o -c /<>/src/util/result2pp.cpp [ 81%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2repseq.cpp.o -c /<>/src/util/result2repseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/result2stats.cpp.o -c /<>/src/util/result2stats.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/reverseseq.cpp.o -c /<>/src/util/reverseseq.cpp [ 82%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/rmdb.cpp.o -c /<>/src/util/rmdb.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/extractframes.cpp.o -c /<>/src/util/extractframes.cpp [ 83%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/sortresult.cpp.o -c /<>/src/util/sortresult.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/sortresult.cpp:7: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/sortresult.cpp:7: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitdb.cpp.o -c /<>/src/util/splitdb.cpp [ 84%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/splitsequence.cpp.o -c /<>/src/util/splitsequence.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/subtractdbs.cpp.o -c /<>/src/util/subtractdbs.cpp [ 85%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizealis.cpp.o -c /<>/src/util/summarizealis.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeheaders.cpp.o -c /<>/src/util/summarizeheaders.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizeresult.cpp.o -c /<>/src/util/summarizeresult.cpp [ 86%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/summarizetabs.cpp.o -c /<>/src/util/summarizetabs.cpp [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/swapresults.cpp.o -c /<>/src/util/swapresults.cpp In file included from /<>/src/prefiltering/CacheFriendlyOperations.h:4, from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/swapresults.cpp:7: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ In file included from /<>/src/prefiltering/QueryMatcher.h:11, from /<>/src/util/swapresults.cpp:7: /<>/src/prefiltering/CacheFriendlyOperations.h: At global scope: /<>/src/prefiltering/CacheFriendlyOperations.h:7:71: warning: left shift count >= width of type [-Wshift-count-overflow] 7 | (((unsigned long) N >= (1UL << (D - 1)) && (unsigned long) N < (1UL << D)) ? D : -1) | ^ /<>/src/prefiltering/CacheFriendlyOperations.h:42:20: note: in expansion of macro ‘IS_REPRESENTIBLE_IN_D_BITS’ 42 | + IS_REPRESENTIBLE_IN_D_BITS(32, N) \ | ^~~~~~~~~~~~~~~~~~~~~~~~~~ /<>/src/prefiltering/CacheFriendlyOperations.h:57:46: note: in expansion of macro ‘BITS_TO_REPRESENT’ 57 | static const unsigned int MASK_0_5_BIT = BITS_TO_REPRESENT(MASK_0_5); | ^~~~~~~~~~~~~~~~~ [ 87%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/transitivealign.cpp.o -c /<>/src/util/transitivealign.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/commons/IndexReader.h:6, from /<>/src/alignment/Alignment.h:6, from /<>/src/util/transitivealign.cpp:9: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translatenucs.cpp.o -c /<>/src/util/translatenucs.cpp [ 88%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/translateaa.cpp.o -c /<>/src/util/translateaa.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tsv2db.cpp.o -c /<>/src/util/tsv2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/tar2db.cpp.o -c /<>/src/util/tar2db.cpp [ 89%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/proteinaln2nucl.cpp.o -c /<>/src/util/proteinaln2nucl.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/versionstring.cpp.o -c /<>/src/util/versionstring.cpp [ 90%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/util/diskspaceavail.cpp.o -c /<>/src/util/diskspaceavail.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Cluster.cpp.o -c /<>/src/workflow/Cluster.cpp [ 91%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/ClusterUpdate.cpp.o -c /<>/src/workflow/ClusterUpdate.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Databases.cpp.o -c /<>/src/workflow/Databases.cpp [ 92%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linclust.cpp.o -c /<>/src/workflow/Linclust.cpp [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasySearch.cpp.o -c /<>/src/workflow/EasySearch.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/workflow/EasySearch.cpp:3: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyRbh.cpp.o -c /<>/src/workflow/EasyRbh.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/workflow/EasyRbh.cpp:3: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 93%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyCluster.cpp.o -c /<>/src/workflow/EasyCluster.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyLinclust.cpp.o -c /<>/src/workflow/EasyLinclust.cpp [ 94%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Enrich.cpp.o -c /<>/src/workflow/Enrich.cpp [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Linsearch.cpp.o -c /<>/src/workflow/Linsearch.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/workflow/Linsearch.cpp:6: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 95%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Map.cpp.o -c /<>/src/workflow/Map.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Rbh.cpp.o -c /<>/src/workflow/Rbh.cpp [ 96%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Search.cpp.o -c /<>/src/workflow/Search.cpp In file included from /<>/src/prefiltering/PrefilteringIndexReader.h:5, from /<>/src/workflow/Search.cpp:6: /<>/src/prefiltering/IndexTable.h: In member function ‘void IndexTable::print(char*)’: /<>/src/prefiltering/IndexTable.h:405:44: warning: comparison of integer expressions of different signedness: ‘unsigned int’ and ‘ptrdiff_t’ {aka ‘int’} [-Wsign-compare] 405 | for (unsigned int j = 0; j < entrySize; j++) { | ~~^~~~~~~~~~~ [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/Taxonomy.cpp.o -c /<>/src/workflow/Taxonomy.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/TaxPerContig.cpp.o -c /<>/src/workflow/TaxPerContig.cpp [ 97%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/EasyTaxonomy.cpp.o -c /<>/src/workflow/EasyTaxonomy.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o CMakeFiles/mmseqs-framework.dir/workflow/CreateIndex.cpp.o -c /<>/src/workflow/CreateIndex.cpp [ 98%] Building CXX object src/CMakeFiles/mmseqs-framework.dir/MMseqsBase.cpp.o cd /<>/obj-mipsel-linux-gnu/src && /usr/bin/mipsel-linux-gnu-g++ -DENABLE_IPS4O=1 -DHAVE_BZLIB=1 -DHAVE_POSIX_FADVISE=1 -DHAVE_POSIX_MADVISE=1 -DHAVE_ZLIB=1 -DOPENMP=1 -I/<>/lib/tinyexpr -I/<>/lib/microtar -I/<>/lib/simde -I/<>/lib -I/<>/lib/simd -I/<>/lib/alp -I/<>/lib/cacode -I/<>/lib/ksw2 -I/<>/lib/xxhash -I/<>/lib/ips4o -I/<>/obj-mipsel-linux-gnu/generated -I/<>/src/alignment -I/<>/src/clustering -I/<>/src/commons -I/<>/src/multihit -I/<>/src/prefiltering -I/<>/src/linclust -I/<>/src/taxonomy -I/<>/src/util -I/<>/src/. -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSIMDE_ENABLE_OPENMP -fopenmp-simd -O3 -Wdate-time -D_FORTIFY_SOURCE=2 -std=c++1y -fsigned-char -pedantic -Wall -Wextra -Wdisabled-optimization -fno-exceptions -fopenmp -o 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We also remove unneeded files & folders like CMake rm -rf debian/mmseqs2/usr/lib/mmseqs2/test/CMakeFiles \ debian/mmseqs2/usr/lib/mmseqs2/test/*.cmake \ debian/mmseqs2/usr/lib/mmseqs2/test/Makefile make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a -a dh_strip -a -a dh_makeshlibs -a -a dh_shlibdeps -a -a dh_installdeb -a debian/rules override_dh_gencontrol make[1]: Entering directory '/<>' dh_gencontrol -- -Vsimde:Built-Using="simde (= 0.7.2-4), " make[1]: Leaving directory '/<>' dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mmseqs2' in '../mmseqs2_12-113e3+ds-3_mipsel.deb'. dpkg-deb: building package 'mmseqs2-dbgsym' in '../mmseqs2-dbgsym_12-113e3+ds-3_mipsel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mmseqs2_12-113e3+ds-3_mipsel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2021-02-26T00:29:16Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mmseqs2_12-113e3+ds-3_mipsel.changes: ------------------------------------- Format: 1.8 Date: Fri, 12 Feb 2021 15:31:20 +0100 Source: mmseqs2 Binary: mmseqs2 mmseqs2-dbgsym Built-For-Profiles: cross nocheck Architecture: mipsel Version: 12-113e3+ds-3 Distribution: unstable Urgency: high Maintainer: Debian Med Packaging Team Changed-By: Michael R. Crusoe Description: mmseqs2 - ultra fast and sensitive protein search and clustering Changes: mmseqs2 (12-113e3+ds-3) unstable; urgency=high . * Team upload. * debian/control: disable building on big-endian at the request of upstream. 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libacl1 (= 2.2.53-10), libarchive-zip-perl (= 1.68-1), libarchive13 (= 3.4.3-2), libasan6 (= 10.2.1-6), libatomic1 (= 10.2.1-6), libattr1 (= 1:2.4.48-6), libaudit-common (= 1:3.0-2), libaudit1 (= 1:3.0-2), libbinutils (= 2.35.2-2), libblkid1 (= 2.36.1-7), libbrotli1 (= 1.0.9-2+b2), libbz2-1.0 (= 1.0.8-4), libbz2-dev (= 1.0.8-4), libc-bin (= 2.31-9), libc-dev-bin (= 2.31-9), libc6 (= 2.31-9), libc6-dev (= 2.31-9), libcap-ng0 (= 0.7.9-2.2+b1), libcc1-0 (= 10.2.1-6), libcom-err2 (= 1.46.1-1), libcrypt-dev (= 1:4.4.17-1), libcrypt1 (= 1:4.4.17-1), libctf-nobfd0 (= 2.35.2-2), libctf0 (= 2.35.2-2), libcurl4 (= 7.74.0-1.1), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.256), libdebhelper-perl (= 13.3.3), libdpkg-perl (= 1.20.7.1), libelf1 (= 0.183-1), libexpat1 (= 2.2.10-2), libffi7 (= 3.3-6), libfile-stripnondeterminism-perl (= 1.11.0-1), libgcc-10-dev (= 10.2.1-6), libgcc-s1 (= 10.2.1-6), libgcrypt20 (= 1.8.7-3), libgdbm-compat4 (= 1.19-2), libgdbm6 (= 1.19-2), libgmp10 (= 2:6.2.1+dfsg-1), libgnutls30 (= 3.7.0-7), libgomp1 (= 10.2.1-6), libgpg-error0 (= 1.38-2), libgssapi-krb5-2 (= 1.18.3-4), libgzstream-dev (= 1.5+dfsg-5), libgzstream0 (= 1.5+dfsg-5), libhogweed6 (= 3.7-2), libicu67 (= 67.1-6), libidn2-0 (= 2.3.0-5), libisl23 (= 0.23-1), libitm1 (= 10.2.1-6), libjsoncpp24 (= 1.9.4-4), libk5crypto3 (= 1.18.3-4), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-4), libkrb5support0 (= 1.18.3-4), libldap-2.4-2 (= 2.4.57+dfsg-2), liblsan0 (= 10.2.1-6), liblz4-1 (= 1.9.3-1), liblzma5 (= 5.2.5-1.0), libmagic-mgc (= 1:5.39-3), libmagic1 (= 1:5.39-3), libmount1 (= 2.36.1-7), libmpc3 (= 1.2.0-1), libmpfr6 (= 4.1.0-3), libncurses6 (= 6.2+20201114-2), libncursesw6 (= 6.2+20201114-2), libnettle8 (= 3.7-2), libnghttp2-14 (= 1.43.0-1), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libp11-kit0 (= 0.23.22-1), libpam-modules (= 1.4.0-4), libpam-modules-bin (= 1.4.0-4), libpam-runtime (= 1.4.0-4), libpam0g (= 1.4.0-4), libpcre2-8-0 (= 10.36-2), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-2), libpipeline1 (= 1.5.3-1), libprocps8 (= 2:3.3.17-4), libpsl5 (= 0.21.0-1.2), libquadmath0 (= 10.2.1-6), librhash0 (= 1.4.1-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b2), libsasl2-2 (= 2.1.27+dfsg-2.1), libsasl2-modules-db (= 2.1.27+dfsg-2.1), libseccomp2 (= 2.5.1-1), libselinux1 (= 3.1-3), libsigsegv2 (= 2.13-1), libsimde-dev (= 0.7.2-4), libsmartcols1 (= 2.36.1-7), libssh2-1 (= 1.9.0-2), libssl1.1 (= 1.1.1j-1), libstdc++-10-dev (= 10.2.1-6), libstdc++6 (= 10.2.1-6), libsub-override-perl (= 0.09-2), libsystemd0 (= 247.3-1), libtasn1-6 (= 4.16.0-2), libtinfo6 (= 6.2+20201114-2), libtirpc-common (= 1.3.1-1), libtirpc-dev (= 1.3.1-1), libtirpc3 (= 1.3.1-1), libtool (= 2.4.6-15), libtsan0 (= 10.2.1-6), libubsan1 (= 10.2.1-6), libuchardet0 (= 0.0.7-1), libudev1 (= 247.3-1), libunistring2 (= 0.9.10-4), libuuid1 (= 2.36.1-7), libuv1 (= 1.40.0-1), libxml2 (= 2.9.10+dfsg-6.3+b1), libzstd-dev (= 1.4.8+dfsg-2), libzstd1 (= 1.4.8+dfsg-2), linux-libc-dev (= 5.10.13-1), login (= 1:4.8.1-1), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4), man-db (= 2.9.4-2), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.2+20201114-2), ncurses-bin (= 6.2+20201114-2), patch (= 2.7.6-7), perl (= 5.32.1-2), perl-base (= 5.32.1-2), perl-modules-5.32 (= 5.32.1-2), po-debconf (= 1.0.21+nmu1), procps (= 2:3.3.17-4), sed (= 4.7-1), sensible-utils (= 0.0.14), sysvinit-utils (= 2.96-6), tar (= 1.34+dfsg-1), util-linux (= 2.36.1-7), xz-utils (= 5.2.5-1.0), zlib1g (= 1:1.2.11.dfsg-2), zlib1g-dev (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1613140280" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mmseqs2-dbgsym_12-113e3+ds-3_mipsel.deb --------------------------------------- new Debian package, version 2.0. size 18572136 bytes: control archive=540 bytes. 385 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: mmseqs2-dbgsym Source: mmseqs2 Version: 12-113e3+ds-3 Auto-Built-Package: debug-symbols Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 18719 Depends: mmseqs2 (= 12-113e3+ds-3) Section: debug Priority: optional Description: debug symbols for mmseqs2 Build-Ids: 696603c72a246437a5af788ec0918e9d5cb6a266 drwxr-xr-x root/root 0 2021-02-12 14:31 ./ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/debug/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/debug/.build-id/69/ -rw-r--r-- root/root 19157320 2021-02-12 14:31 ./usr/lib/debug/.build-id/69/6603c72a246437a5af788ec0918e9d5cb6a266.debug drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/doc/ lrwxrwxrwx root/root 0 2021-02-12 14:31 ./usr/share/doc/mmseqs2-dbgsym -> mmseqs2 mmseqs2_12-113e3+ds-3_mipsel.deb -------------------------------- new Debian package, version 2.0. size 4427680 bytes: control archive=1272 bytes. 1105 bytes, 19 lines control 739 bytes, 11 lines md5sums Package: mmseqs2 Version: 12-113e3+ds-3 Architecture: mipsel Maintainer: Debian Med Packaging Team Installed-Size: 8180 Depends: libatomic1 (>= 4.8), libbz2-1.0, libc6 (>= 2.29), libgcc-s1 (>= 4.2), libgomp1 (>= 6), libgzstream0 (>= 1.5+dfsg), libstdc++6 (>= 9), libzstd1 (>= 1.3.8), zlib1g (>= 1:1.1.4) Built-Using: simde (= 0.7.2-4) Section: science Priority: optional Homepage: https://github.com/soedinglab/MMseqs2 Description: ultra fast and sensitive protein search and clustering MMseqs2 (Many-against-Many sequence searching) is a software suite to search and cluster huge proteins/nucleotide sequence sets. MMseqs2 is open source GPL-licensed software implemented in C++ for Linux, MacOS, and (as beta version, via cygwin) Windows. The software is designed to run on multiple cores and servers and exhibits very good scalability. MMseqs2 can run 10000 times faster than BLAST. At 100 times its speed it achieves almost the same sensitivity. It can perform profile searches with the same sensitivity as PSI-BLAST at over 400 times its speed. drwxr-xr-x root/root 0 2021-02-12 14:31 ./ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/bin/ -rwxr-xr-x root/root 5125320 2021-02-12 14:31 ./usr/bin/mmseqs drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/mmseqs2/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/lib/mmseqs2/test/ -rw-r--r-- root/root 48 2021-02-12 14:31 ./usr/lib/mmseqs2/test/dataGap -rw-r--r-- root/root 53 2021-02-12 14:31 ./usr/lib/mmseqs2/test/dataGap.index -rw-r--r-- root/root 30 2021-02-12 14:31 ./usr/lib/mmseqs2/test/dataLinear -rw-r--r-- root/root 40 2021-02-12 14:31 ./usr/lib/mmseqs2/test/dataLinear.index drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/doc/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/doc/mmseqs2/ -rw-r--r-- root/root 4840 2020-09-01 11:13 ./usr/share/doc/mmseqs2/README.md.gz -rw-r--r-- root/root 1876 2021-02-12 14:31 ./usr/share/doc/mmseqs2/changelog.Debian.gz -rw-r--r-- root/root 47136 2020-09-01 12:40 ./usr/share/doc/mmseqs2/copyright -rw-r--r-- root/root 3171441 2020-09-01 12:38 ./usr/share/doc/mmseqs2/userguide.pdf.gz drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/man/ drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/man/man1/ -rw-r--r-- root/root 3355 2021-02-12 14:31 ./usr/share/man/man1/mmseqs.1.gz drwxr-xr-x root/root 0 2021-02-12 14:31 ./usr/share/mmseqs2/ -rwxr-xr-x root/root 444 2020-09-01 11:13 ./usr/share/mmseqs2/bash-completion.sh lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [571 B] Get:5 copy:/<>/apt_archive ./ Packages [652 B] Fetched 2186 B in 0s (87.4 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libdevel-lexalias-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libpackage-stash-xs-perl libref-util-perl libtype-tiny-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:mipsel t1utils unzip 0 upgraded, 90 newly installed, 0 to remove and 0 not upgraded. Need to get 7626 kB of archives. After this operation, 21.7 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [852 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.1-1 [73.7 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.1-1 [169 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.64-1 [36.6 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.4-1 [51.1 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.27-1 [547 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.34.1-3 [797 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.27-1 [927 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libaliased-perl all 0.34-1.1 [14.1 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.39 [72.1 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b3 [11.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1.1 [12.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1+b2 [15.9 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b3 [25.7 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-implementation-perl all 0.09-1.1 [12.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libvariable-magic-perl amd64 0.62-1+b3 [45.7 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-endofscope-perl all 0.24-1.1 [18.9 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-xsaccessor-perl amd64 1.19-3+b7 [38.1 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.45-1+b1 [15.4 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-tiny-perl all 2.24-1 [16.2 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libcpanel-json-xs-perl amd64 4.25-1+b1 [129 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-stacktrace-perl all 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[10.8 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-perl all 0.987-1 [47.2 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-dpath-perl all 0.58-1 [43.5 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-messagepack-perl amd64 1.00-4+b1 [38.8 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1.1 [33.5 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-size-perl amd64 0.83-1+b2 [26.1 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-address-xs-perl amd64 1.04-1+b3 [28.0 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.30-1 [28.2 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 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http://debian.oregonstate.edu/debian unstable/main amd64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 liblzo2-2 amd64 2.10-2 [56.9 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmarkdown2 amd64 2.2.6-1 [36.8 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.004004-1 [59.9 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libmouse-perl amd64 2.5.10-1+b1 [172 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-identify-perl amd64 0.14-1+b3 [12.0 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.26-1+b1 [13.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.118-1 [53.5 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libperlio-gzip-perl amd64 0.19-1+b7 [17.4 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libproc-processtable-perl amd64 0.59-2+b1 [45.9 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-decoder-perl amd64 4.018+ds-1+b1 [99.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libsereal-encoder-perl amd64 4.018+ds-1+b1 [103 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshteinxs-perl amd64 0.03-4+b8 [8724 B] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-markdown-discount-perl amd64 0.12-1+b1 [13.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-xslate-perl amd64 3.5.8-1+b1 [197 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libtime-moment-perl amd64 0.44-1+b3 [75.8 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.012001-2 [351 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libunicode-utf8-perl amd64 0.62-1+b2 [20.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 5.07-1 [90.4 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.82+repack-1+b1 [35.8 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 lzip amd64 1.22-3 [88.5 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 lzop amd64 1.04-2 [84.2 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.4.2-1 [77.5 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-4 [62.1 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 unzip amd64 6.0-26 [171 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.104.0 [1265 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7626 kB in 0s (27.3 MB/s) Selecting previously unselected package readline-common. (Reading database ... 24497 files and directories currently installed.) Preparing to unpack .../00-readline-common_8.1-1_all.deb ... Unpacking readline-common (8.1-1) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../01-libreadline8_8.1-1_amd64.deb ... Unpacking libreadline8:amd64 (8.1-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../02-diffstat_1.64-1_amd64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:amd64. Preparing to unpack .../03-libassuan0_2.5.4-1_amd64.deb ... Unpacking libassuan0:amd64 (2.5.4-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../04-gpgconf_2.2.27-1_amd64.deb ... Unpacking gpgconf (2.2.27-1) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../05-libsqlite3-0_3.34.1-3_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.34.1-3) ... Selecting previously unselected package gpg. 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Setting up libsqlite3-0:amd64 (3.34.1-3) ... Setting up libyaml-libyaml-perl (0.82+repack-1+b1) ... Setting up libtry-tiny-perl (0.30-1) ... Setting up liblzo2-2:amd64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:amd64 (2.5.4-1) ... Setting up libconfig-tiny-perl (2.24-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... Setting up liblist-utilsby-perl (0.11-1) ... Setting up libsub-install-perl (0.928-1.1) ... Setting up libnumber-compare-perl (0.03-1.1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004003-1) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libfile-find-rule-perl (0.34-1) ... Setting up libipc-system-simple-perl (1.30-1) ... Setting up libnet-domain-tld-perl (1.75-1.1) ... Setting up lzip (1.22-3) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl (3.5.8-1+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl (0.59-2+b1) ... Setting up libpath-tiny-perl (0.118-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.048-2) ... Setting up libaliased-perl (0.34-1.1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006006-1) ... Setting up libdevel-stacktrace-perl (2.0400-1) ... Setting up libclass-xsaccessor-perl (1.19-3+b7) ... Setting up libexporter-tiny-perl (1.002002-1) ... Setting up libfont-ttf-perl (1.06-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-4+b8) ... Setting up libperlio-gzip-perl (0.19-1+b7) ... Setting up readline-common (8.1-1) ... Setting up libhtml-html5-entities-perl (0.004-1.1) ... Setting up libsereal-decoder-perl (4.018+ds-1+b1) ... Setting up libmarkdown2:amd64 (2.2.6-1) ... Setting up liburi-perl (5.07-1) ... Setting up libemail-address-xs-perl (1.04-1+b3) ... Setting up libfile-basedir-perl (0.08-1) ... Setting up liblist-moreutils-perl (0.430-2) ... Setting up libreadline8:amd64 (8.1-1) ... Setting up libtype-tiny-perl (1.012001-2) ... Setting up libtext-markdown-discount-perl:amd64 (0.12-1+b1) ... Setting up libexception-class-perl (1.44-1) ... Setting up libdevel-callchecker-perl (0.008-1+b2) ... Setting up libdata-optlist-perl (0.110-1.1) ... Setting up gpgconf (2.2.27-1) ... Setting up gpg (2.2.27-1) ... Setting up libsub-exporter-perl (0.987-1) ... Setting up libiterator-perl (0.03+ds1-1.1) ... Setting up libiterator-util-perl (0.02+ds1-1.1) ... Setting up libparams-classify-perl (0.015-1+b3) ... Setting up libmodule-runtime-perl (0.016-1) ... Setting up libdata-dpath-perl (0.58-1) ... Setting up libmodule-implementation-perl (0.09-1.1) ... Setting up libpackage-stash-perl (0.39-1) ... Setting up libimport-into-perl (1.002005-1) ... Setting up libmoo-perl (2.004004-1) ... Setting up libmoox-aliases-perl (0.001006-1.1) ... Setting up libb-hooks-endofscope-perl (0.24-1.1) ... Setting up libnamespace-clean-perl (0.27-1) ... Setting up lintian (2.104.0) ... Setting up sbuild-build-depends-lintian-dummy:mipsel (0.invalid.0) ... Processing triggers for man-db (2.9.4-2) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for libc-bin (2.31-9) ... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 551864 Build-Time: 598 Distribution: unstable Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 22 Job: mmseqs2_12-113e3+ds-3 Lintian: pass Machine Architecture: amd64 Package: mmseqs2 Package-Time: 634 Source-Version: 12-113e3+ds-3 Space: 551864 Status: successful Version: 12-113e3+ds-3 -------------------------------------------------------------------------------- Finished at 2021-02-26T00:29:16Z Build needed 00:10:34, 551864k disk space