sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | molmodel 3.1.0-4.1 (amd64) Mon, 18 Mar 2024 21:56:20 +0000 | +==============================================================================+ Package: molmodel Version: 3.1.0-4.1 Source Version: 3.1.0-4.1 Distribution: unstable Machine Architecture: arm64 Host Architecture: amd64 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.adTs9cAgzN... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-I51vIk/resolver-Ij33YI' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [198 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [10.7 MB] Get:3 http://mirror.einval.org/debian unstable/main arm64 Packages [9844 kB] Get:4 http://mirror.einval.org/debian unstable/main amd64 Packages [9964 kB] Fetched 30.7 MB in 8s (3970 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: gpgv libselinux1 2 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 701 kB of archives. After this operation, 1024 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 gpgv arm64 2.2.40-3 [630 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libselinux1 arm64 3.5-2+b1 [70.4 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 701 kB in 0s (20.8 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11888 files and directories currently installed.) Preparing to unpack .../gpgv_2.2.40-3_arm64.deb ... Unpacking gpgv (2.2.40-3) over (2.2.40-2) ... Setting up gpgv (2.2.40-3) ... (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11888 files and directories currently installed.) Preparing to unpack .../libselinux1_3.5-2+b1_arm64.deb ... Unpacking libselinux1:arm64 (3.5-2+b1) over (3.5-2) ... Setting up libselinux1:arm64 (3.5-2+b1) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'molmodel' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/molmodel.git Please use: git clone https://salsa.debian.org/debichem-team/molmodel.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.1 MB of source archives. Get:1 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (dsc) [2238 B] Get:2 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (tar) [11.1 MB] Get:3 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (diff) [4668 B] Fetched 11.1 MB in 0s (28.7 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/molmodel-I51vIk/molmodel-3.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-I51vIk' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 Filtered Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-amd64:arm64, libc-dev:amd64, libstdc++-dev:amd64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [851 B] Get:5 copy:/<>/apt_archive ./ Packages [894 B] Fetched 2354 B in 0s (133 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file freeglut3-dev:amd64 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gemmi-dev:amd64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2t64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:amd64 libdrm-common libdrm-intel1:amd64 libdrm-nouveau2:amd64 libdrm-radeon1:amd64 libdrm2:amd64 libedit2:amd64 libegl-dev:amd64 libegl-mesa0:amd64 libegl1:amd64 libelf1t64 libelf1t64:amd64 libexpat1 libexpat1:amd64 libfakeroot libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgbm1:amd64 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgl-dev:amd64 libgl1:amd64 libgl1-mesa-dev:amd64 libgl1-mesa-dri:amd64 libglapi-mesa:amd64 libgles-dev:amd64 libgles1:amd64 libgles2:amd64 libglu1-mesa:amd64 libglu1-mesa-dev:amd64 libglut-dev:amd64 libglut3.12:amd64 libglvnd-core-dev:amd64 libglvnd-dev:amd64 libglvnd0:amd64 libglx-dev:amd64 libglx-mesa0:amd64 libglx0:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libice-dev:amd64 libice6:amd64 libicu72 libicu72:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:amd64 liblapack3:amd64 libldap-2.5-0 libllvm17t64:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma5:amd64 libmagic-mgc libmagic1t64 libmd0:amd64 libmmdb2-0:amd64 libmmdb2-dev:amd64 libncursesw6 libnghttp2-14 libopenblas-pthread-dev:amd64 libopenblas0-pthread:amd64 libopengl-dev:amd64 libopengl0:amd64 libopenmm-dev:amd64 libopenmm8.0t64:amd64 libpciaccess0:amd64 libpipeline1 libproc2-0 libpsl5t64 libpthread-stubs0-dev libpthread-stubs0-dev:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:amd64 libsimbody-dev:amd64 libsimbody3.7:amd64 libsm-dev:amd64 libsm6:amd64 libssh2-1t64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtinfo6:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuuid1:amd64 libuv1t64 libvulkan1:amd64 libwayland-client0:amd64 libwayland-server0:amd64 libx11-6 libx11-6:amd64 libx11-data libx11-dev libx11-dev:amd64 libx11-xcb1:amd64 libxau-dev libxau-dev:amd64 libxau6 libxau6:amd64 libxcb-dri2-0:amd64 libxcb-dri3-0:amd64 libxcb-glx0:amd64 libxcb-present0:amd64 libxcb-randr0:amd64 libxcb-shm0:amd64 libxcb-sync1:amd64 libxcb-xfixes0:amd64 libxcb1 libxcb1:amd64 libxcb1-dev libxcb1-dev:amd64 libxdmcp-dev libxdmcp-dev:amd64 libxdmcp6 libxdmcp6:amd64 libxext-dev:amd64 libxext6:amd64 libxfixes-dev:amd64 libxfixes3:amd64 libxi-dev:amd64 libxi6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxmu-dev:amd64 libxmu-headers libxmu6:amd64 libxshmfence1:amd64 libxt-dev:amd64 libxt6t64:amd64 libxxf86vm1:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 m4 man-db po-debconf procps sensible-utils tao-pegtl-dev ucf x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:amd64 zlib1g-dev:amd64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch gcc-13-doc manpages-dev flex bison gdb-x86-64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:amd64 libc-l10n:amd64 locales:amd64 libnss-nis:amd64 libnss-nisplus:amd64 manpages-dev:amd64 krb5-doc krb5-user libice-doc:amd64 liblapack-doc:amd64 pciutils:amd64 lm-sensors lm-sensors:amd64 libsm-doc:amd64 libstdc++-13-doc:amd64 libtool-doc gfortran | fortran95-compiler gcj-jdk libx11-doc libx11-doc:amd64 libxcb-doc libxcb-doc:amd64 libxext-doc:amd64 libxt-doc:amd64 libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:amd64 ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev uuid-runtime:amd64 mesa-vulkan-drivers:amd64 | vulkan-icd:amd64 libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-x86-64-linux-gnu bsdextrautils cmake cmake-data cpp-13-x86-64-linux-gnu cpp-x86-64-linux-gnu cross-config crossbuild-essential-amd64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file freeglut3-dev:amd64 g++-13-x86-64-linux-gnu g++-x86-64-linux-gnu gcc-13-base:amd64 gcc-13-cross-base gcc-13-x86-64-linux-gnu gcc-13-x86-64-linux-gnu-base gcc-14-base:amd64 gcc-14-cross-base gcc-x86-64-linux-gnu gemmi-dev:amd64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:amd64 libasan8-amd64-cross libatomic1:amd64 libatomic1-amd64-cross libbrotli1 libbsd0 libbsd0:amd64 libc6:amd64 libc6-amd64-cross libc6-dev:amd64 libc6-dev-amd64-cross libcom-err2t64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:amd64 libcrypt1:amd64 libcurl4t64 libdebhelper-perl libdebian-dpkgcross-perl libdrm-amdgpu1:amd64 libdrm-common libdrm-intel1:amd64 libdrm-nouveau2:amd64 libdrm-radeon1:amd64 libdrm2:amd64 libedit2:amd64 libegl-dev:amd64 libegl-mesa0:amd64 libegl1:amd64 libelf1t64 libelf1t64:amd64 libexpat1 libexpat1:amd64 libfakeroot libffi8:amd64 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgbm1:amd64 libgcc-13-dev:amd64 libgcc-13-dev-amd64-cross libgcc-s1:amd64 libgcc-s1-amd64-cross libgfortran5:amd64 libgl-dev:amd64 libgl1:amd64 libgl1-mesa-dev:amd64 libgl1-mesa-dri:amd64 libglapi-mesa:amd64 libgles-dev:amd64 libgles1:amd64 libgles2:amd64 libglu1-mesa:amd64 libglu1-mesa-dev:amd64 libglut-dev:amd64 libglut3.12:amd64 libglvnd-core-dev:amd64 libglvnd-dev:amd64 libglvnd0:amd64 libglx-dev:amd64 libglx-mesa0:amd64 libglx0:amd64 libgomp1:amd64 libgomp1-amd64-cross libgssapi-krb5-2 libhwasan0:amd64 libhwasan0-amd64-cross libice-dev:amd64 libice6:amd64 libicu72 libicu72:amd64 libio-string-perl libitm1:amd64 libitm1-amd64-cross libjsoncpp25 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:amd64 liblapack3:amd64 libldap-2.5-0 libllvm17t64:amd64 liblocale-gettext-perl liblsan0:amd64 liblsan0-amd64-cross liblzma5:amd64 libmagic-mgc libmagic1t64 libmd0:amd64 libmmdb2-0:amd64 libmmdb2-dev:amd64 libncursesw6 libnghttp2-14 libopenblas-pthread-dev:amd64 libopenblas0-pthread:amd64 libopengl-dev:amd64 libopengl0:amd64 libopenmm-dev:amd64 libopenmm8.0t64:amd64 libpciaccess0:amd64 libpipeline1 libproc2-0 libpsl5t64 libpthread-stubs0-dev libpthread-stubs0-dev:amd64 libquadmath0:amd64 libquadmath0-amd64-cross librhash0 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:amd64 libsimbody-dev:amd64 libsimbody3.7:amd64 libsm-dev:amd64 libsm6:amd64 libssh2-1t64 libstdc++-13-dev:amd64 libstdc++-13-dev-amd64-cross libstdc++6:amd64 libstdc++6-amd64-cross libsub-override-perl libtinfo6:amd64 libtool libtsan2:amd64 libtsan2-amd64-cross libubsan1:amd64 libubsan1-amd64-cross libuchardet0 libuuid1:amd64 libuv1t64 libvulkan1:amd64 libwayland-client0:amd64 libwayland-server0:amd64 libx11-6 libx11-6:amd64 libx11-data libx11-dev libx11-dev:amd64 libx11-xcb1:amd64 libxau-dev libxau-dev:amd64 libxau6 libxau6:amd64 libxcb-dri2-0:amd64 libxcb-dri3-0:amd64 libxcb-glx0:amd64 libxcb-present0:amd64 libxcb-randr0:amd64 libxcb-shm0:amd64 libxcb-sync1:amd64 libxcb-xfixes0:amd64 libxcb1 libxcb1:amd64 libxcb1-dev libxcb1-dev:amd64 libxdmcp-dev libxdmcp-dev:amd64 libxdmcp6 libxdmcp6:amd64 libxext-dev:amd64 libxext6:amd64 libxfixes-dev:amd64 libxfixes3:amd64 libxi-dev:amd64 libxi6:amd64 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxml2:amd64 libxmu-dev:amd64 libxmu-headers libxmu6:amd64 libxshmfence1:amd64 libxt-dev:amd64 libxt6t64:amd64 libxxf86vm1:amd64 libyaml-perl libz3-4:amd64 libzstd1:amd64 m4 man-db po-debconf procps sbuild-build-depends-main-dummy:amd64 sensible-utils tao-pegtl-dev ucf x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:amd64 zlib1g-dev:amd64 0 upgraded, 235 newly installed, 0 to remove and 0 not upgraded. Need to get 203 MB of archives. After this operation, 908 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 liblocale-gettext-perl arm64 1.07-6+b2 [15.0 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.4+20240113-1 [124 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-4 [61.7 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-4 [869 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.22 [22.4 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.45-3 [314 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.45-3 [100 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.45-3 [43.0 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.21-14+b1 [160 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b1 [69.0 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-3+b1 [1126 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.39.3-10 [90.4 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.7-1+b2 [36.7 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.12.0-3 [1385 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0043+nmu1 [55.2 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-4 [277 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.71-3 [332 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20220109.1 [51.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.16.5-1.3 [823 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.21-14 [496 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libicu72 arm64 72.1-4+b1 [9224 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.9.14+dfsg-1.3+b2 [624 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.2-1.1 [319 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b3 [295 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.20.1-6 [32.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libcom-err2t64 arm64 1.47.0-2.3+b1 [20.4 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.20.1-6 [80.1 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-3 [9112 B] Get:30 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.20.1-6 [315 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.20.1-6 [124 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-4+b2 [20.2 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-4+b2 [55.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libldap-2.5-0 arm64 2.5.16+dfsg-2 [173 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.59.0-1+b1 [70.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1 [56.8 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b3 [56.7 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.0-4.1+b1 [207 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.6.0-4 [403 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.6.2-1 [88.7 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp25 arm64 1.9.5-6+b2 [73.2 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 librhash0 arm64 1.4.3-3+b1 [127 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.48.0-1.1 [142 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.28.3-1 [2128 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.28.3-1+b1 [8896 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu-base arm64 13.2.0-12cross1 [42.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 cpp-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [9273 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 cpp-x86-64-linux-gnu arm64 4:13.2.0-7 [4732 B] Get:49 http://mirror.einval.org/debian unstable/main arm64 cross-config all 2.6.20 [16.3 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 binutils-x86-64-linux-gnu arm64 2.42-3 [2372 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 gcc-13-cross-base all 13.2.0-12cross1 [38.1 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14-20240127-1cross1 [37.9 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-amd64-cross all 14-20240127-1cross1 [71.7 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libgomp1-amd64-cross all 14-20240127-1cross1 [128 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libitm1-amd64-cross all 14-20240127-1cross1 [25.2 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libatomic1-amd64-cross all 14-20240127-1cross1 [8996 B] Get:57 http://mirror.einval.org/debian unstable/main arm64 libasan8-amd64-cross all 14-20240127-1cross1 [2716 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 liblsan0-amd64-cross all 14-20240127-1cross1 [1199 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libtsan2-amd64-cross all 14-20240127-1cross1 [2444 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libc6-amd64-cross all 2.37-12cross1 [1478 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-amd64-cross all 14-20240127-1cross1 [667 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libubsan1-amd64-cross all 14-20240127-1cross1 [1070 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libhwasan0-amd64-cross all 14-20240127-1cross1 [1434 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-amd64-cross all 14-20240127-1cross1 [146 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libgcc-13-dev-amd64-cross all 13.2.0-12cross1 [2536 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 gcc-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [17.8 MB] Get:67 http://mirror.einval.org/debian unstable/main arm64 gcc-x86-64-linux-gnu arm64 4:13.2.0-7 [1452 B] Get:68 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-amd64-cross all 2.37-12cross1 [1898 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libstdc++-13-dev-amd64-cross all 13.2.0-12cross1 [2210 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 g++-13-x86-64-linux-gnu arm64 13.2.0-12cross1 [10.1 MB] Get:71 http://mirror.einval.org/debian unstable/main arm64 g++-x86-64-linux-gnu arm64 4:13.2.0-7 [1204 B] Get:72 http://mirror.einval.org/debian unstable/main arm64 libconfig-inifiles-perl all 3.000003-2 [45.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-1+b3 [299 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libyaml-perl all 1.31-1 [64.8 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-which-perl all 1.27-2 [15.1 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 dpkg-cross all 2.6.20 [25.8 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-amd64 all 12.10 [3488 B] Get:86 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.14.1 [85.6 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.4.7-7 [517 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libsub-override-perl all 0.10-1 [10.6 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:93 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.191-1 [188 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.21-14+b1 [1249 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.14.1 [890 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.34-1 [28.4 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.34-1 [73.5 kB] Get:101 http://mirror.einval.org/debian unstable/main amd64 gcc-14-base amd64 14-20240315-1 [42.9 kB] Get:102 http://mirror.einval.org/debian unstable/main amd64 libgcc-s1 amd64 14-20240315-1 [72.2 kB] Get:103 http://mirror.einval.org/debian unstable/main amd64 libc6 amd64 2.37-15.1 [2752 kB] Get:104 http://mirror.einval.org/debian unstable/main amd64 libglvnd0 amd64 1.7.0-1 [51.3 kB] Get:105 http://mirror.einval.org/debian unstable/main amd64 libxau6 amd64 1:1.0.9-1 [19.7 kB] Get:106 http://mirror.einval.org/debian unstable/main amd64 libmd0 amd64 1.1.0-2 [35.8 kB] Get:107 http://mirror.einval.org/debian unstable/main amd64 libbsd0 amd64 0.12.2-1 [131 kB] Get:108 http://mirror.einval.org/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:109 http://mirror.einval.org/debian unstable/main amd64 libxcb1 amd64 1.15-1 [144 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.7-1 [328 kB] Get:111 http://mirror.einval.org/debian unstable/main amd64 libx11-6 amd64 2:1.8.7-1 [802 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libdrm-common all 2.4.120-2 [7688 B] Get:113 http://mirror.einval.org/debian unstable/main amd64 libdrm2 amd64 2.4.120-2 [38.1 kB] Get:114 http://mirror.einval.org/debian unstable/main amd64 libexpat1 amd64 2.6.2-1 [103 kB] Get:115 http://mirror.einval.org/debian unstable/main amd64 libglapi-mesa amd64 24.0.3-1 [36.3 kB] Get:116 http://mirror.einval.org/debian unstable/main amd64 libx11-xcb1 amd64 2:1.8.7-1 [232 kB] Get:117 http://mirror.einval.org/debian unstable/main amd64 libxcb-dri2-0 amd64 1.15-1 [107 kB] Get:118 http://mirror.einval.org/debian unstable/main amd64 libxcb-dri3-0 amd64 1.15-1 [107 kB] Get:119 http://mirror.einval.org/debian unstable/main amd64 libxcb-glx0 amd64 1.15-1 [122 kB] Get:120 http://mirror.einval.org/debian unstable/main amd64 libxcb-present0 amd64 1.15-1 [105 kB] Get:121 http://mirror.einval.org/debian unstable/main amd64 libxcb-randr0 amd64 1.15-1 [117 kB] Get:122 http://mirror.einval.org/debian unstable/main amd64 libxcb-shm0 amd64 1.15-1 [105 kB] Get:123 http://mirror.einval.org/debian unstable/main amd64 libxcb-sync1 amd64 1.15-1 [109 kB] Get:124 http://mirror.einval.org/debian unstable/main amd64 libxcb-xfixes0 amd64 1.15-1 [109 kB] Get:125 http://mirror.einval.org/debian unstable/main amd64 libxext6 amd64 2:1.3.4-1+b1 [52.9 kB] Get:126 http://mirror.einval.org/debian unstable/main amd64 libxfixes3 amd64 1:6.0.0-2 [22.7 kB] Get:127 http://mirror.einval.org/debian unstable/main amd64 libxshmfence1 amd64 1.3-1 [8820 B] Get:128 http://mirror.einval.org/debian unstable/main amd64 libxxf86vm1 amd64 1:1.1.4-1+b2 [20.8 kB] Get:129 http://mirror.einval.org/debian unstable/main amd64 libvulkan1 amd64 1.3.275.0-1 [124 kB] Get:130 http://mirror.einval.org/debian unstable/main amd64 libdrm-amdgpu1 amd64 2.4.120-2 [21.4 kB] Get:131 http://mirror.einval.org/debian unstable/main amd64 zlib1g amd64 1:1.3.dfsg-3.1 [87.6 kB] Get:132 http://mirror.einval.org/debian unstable/main amd64 libpciaccess0 amd64 0.17-3 [51.6 kB] Get:133 http://mirror.einval.org/debian unstable/main amd64 libdrm-intel1 amd64 2.4.120-2 [62.7 kB] Get:134 http://mirror.einval.org/debian unstable/main amd64 libdrm-nouveau2 amd64 2.4.120-2 [19.3 kB] Get:135 http://mirror.einval.org/debian unstable/main amd64 libdrm-radeon1 amd64 2.4.120-2 [22.2 kB] Get:136 http://mirror.einval.org/debian unstable/main amd64 libzstd1 amd64 1.5.5+dfsg2-2 [295 kB] Get:137 http://mirror.einval.org/debian unstable/main amd64 libelf1t64 amd64 0.191-1 [189 kB] Get:138 http://mirror.einval.org/debian unstable/main amd64 libtinfo6 amd64 6.4+20240113-1 [342 kB] Get:139 http://mirror.einval.org/debian unstable/main amd64 libedit2 amd64 3.1-20230828-1 [93.1 kB] Get:140 http://mirror.einval.org/debian unstable/main amd64 libffi8 amd64 3.4.6-1 [23.6 kB] Get:141 http://mirror.einval.org/debian unstable/main amd64 libstdc++6 amd64 14-20240315-1 [713 kB] Get:142 http://mirror.einval.org/debian unstable/main amd64 libicu72 amd64 72.1-4+b1 [9395 kB] Get:143 http://mirror.einval.org/debian unstable/main amd64 liblzma5 amd64 5.6.0-0.2 [250 kB] Get:144 http://mirror.einval.org/debian unstable/main amd64 libxml2 amd64 2.9.14+dfsg-1.3+b2 [692 kB] Get:145 http://mirror.einval.org/debian unstable/main amd64 libz3-4 amd64 4.8.12-3.1+b2 [7346 kB] Get:146 http://mirror.einval.org/debian unstable/main amd64 libllvm17t64 amd64 1:17.0.6-9 [23.7 MB] Get:147 http://mirror.einval.org/debian unstable/main arm64 libsensors-config all 1:3.6.0-9 [14.6 kB] Get:148 http://mirror.einval.org/debian unstable/main amd64 libsensors5 amd64 1:3.6.0-9 [34.6 kB] Get:149 http://mirror.einval.org/debian unstable/main amd64 libgl1-mesa-dri amd64 24.0.3-1 [8282 kB] Get:150 http://mirror.einval.org/debian unstable/main amd64 libglx-mesa0 amd64 24.0.3-1 [151 kB] Get:151 http://mirror.einval.org/debian unstable/main amd64 libglx0 amd64 1.7.0-1 [34.7 kB] Get:152 http://mirror.einval.org/debian unstable/main amd64 libgl1 amd64 1.7.0-1 [89.7 kB] Get:153 http://mirror.einval.org/debian unstable/main amd64 libxi6 amd64 2:1.8.1-1 [79.0 kB] Get:154 http://mirror.einval.org/debian unstable/main amd64 libglut3.12 amd64 3.4.0-1+b1 [139 kB] Get:155 http://mirror.einval.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:156 http://mirror.einval.org/debian unstable/main arm64 x11proto-dev all 2023.2-1 [598 kB] Get:157 http://mirror.einval.org/debian unstable/main amd64 libxau-dev amd64 1:1.0.9-1 [22.9 kB] Get:158 http://mirror.einval.org/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB] Get:159 http://mirror.einval.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:160 http://mirror.einval.org/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B] Get:161 http://mirror.einval.org/debian unstable/main amd64 libxcb1-dev amd64 1.15-1 [181 kB] Get:162 http://mirror.einval.org/debian unstable/main amd64 libx11-dev amd64 2:1.8.7-1 [875 kB] Get:163 http://mirror.einval.org/debian unstable/main amd64 libglx-dev amd64 1.7.0-1 [15.5 kB] Get:164 http://mirror.einval.org/debian unstable/main amd64 libgl-dev amd64 1.7.0-1 [100 kB] Get:165 http://mirror.einval.org/debian unstable/main amd64 libglvnd-core-dev amd64 1.7.0-1 [13.1 kB] Get:166 http://mirror.einval.org/debian unstable/main amd64 libwayland-server0 amd64 1.22.0-2.1+b1 [33.0 kB] Get:167 http://mirror.einval.org/debian unstable/main amd64 libgbm1 amd64 24.0.3-1 [40.7 kB] Get:168 http://mirror.einval.org/debian unstable/main amd64 libwayland-client0 amd64 1.22.0-2.1+b1 [25.7 kB] Get:169 http://mirror.einval.org/debian unstable/main amd64 libegl-mesa0 amd64 24.0.3-1 [119 kB] Get:170 http://mirror.einval.org/debian unstable/main amd64 libegl1 amd64 1.7.0-1 [34.0 kB] Get:171 http://mirror.einval.org/debian unstable/main amd64 libegl-dev amd64 1.7.0-1 [19.2 kB] Get:172 http://mirror.einval.org/debian unstable/main amd64 libgles1 amd64 1.7.0-1 [11.9 kB] Get:173 http://mirror.einval.org/debian unstable/main amd64 libgles2 amd64 1.7.0-1 [16.9 kB] Get:174 http://mirror.einval.org/debian unstable/main amd64 libgles-dev amd64 1.7.0-1 [50.5 kB] Get:175 http://mirror.einval.org/debian unstable/main amd64 libopengl0 amd64 1.7.0-1 [30.8 kB] Get:176 http://mirror.einval.org/debian unstable/main amd64 libopengl-dev amd64 1.7.0-1 [5104 B] Get:177 http://mirror.einval.org/debian unstable/main amd64 libglvnd-dev amd64 1.7.0-1 [4868 B] Get:178 http://mirror.einval.org/debian unstable/main amd64 libgl1-mesa-dev amd64 24.0.3-1 [16.9 kB] Get:179 http://mirror.einval.org/debian unstable/main amd64 libglu1-mesa amd64 9.0.2-1.1 [178 kB] Get:180 http://mirror.einval.org/debian unstable/main amd64 libglu1-mesa-dev amd64 9.0.2-1.1 [216 kB] Get:181 http://mirror.einval.org/debian unstable/main amd64 libxext-dev amd64 2:1.3.4-1+b1 [107 kB] Get:182 http://mirror.einval.org/debian unstable/main arm64 x11-common all 1:7.7+23 [252 kB] Get:183 http://mirror.einval.org/debian unstable/main amd64 libice6 amd64 2:1.0.10-1 [58.5 kB] Get:184 http://mirror.einval.org/debian unstable/main amd64 libuuid1 amd64 2.39.3-10 [30.1 kB] Get:185 http://mirror.einval.org/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:186 http://mirror.einval.org/debian unstable/main amd64 libxt6t64 amd64 1:1.2.1-1.2 [187 kB] Get:187 http://mirror.einval.org/debian unstable/main amd64 libice-dev amd64 2:1.0.10-1 [67.1 kB] Get:188 http://mirror.einval.org/debian unstable/main amd64 libsm-dev amd64 2:1.2.3-1 [38.0 kB] Get:189 http://mirror.einval.org/debian unstable/main amd64 libxt-dev amd64 1:1.2.1-1.2 [406 kB] Get:190 http://mirror.einval.org/debian unstable/main amd64 libglut-dev amd64 3.4.0-1+b1 [163 kB] Get:191 http://mirror.einval.org/debian unstable/main amd64 freeglut3-dev amd64 3.4.0-1+b1 [53.4 kB] Get:192 http://mirror.einval.org/debian unstable/main amd64 gcc-13-base amd64 13.2.0-19 [43.8 kB] Get:193 http://mirror.einval.org/debian unstable/main amd64 gemmi-dev amd64 0.6.4+ds-1 [1115 kB] Get:194 http://mirror.einval.org/debian unstable/main amd64 libasan8 amd64 14-20240315-1 [2724 kB] Get:195 http://mirror.einval.org/debian unstable/main amd64 libatomic1 amd64 14-20240315-1 [9224 B] Get:196 http://mirror.einval.org/debian unstable/main arm64 libbsd0 arm64 0.12.2-1 [129 kB] Get:197 http://mirror.einval.org/debian unstable/main amd64 libcrypt1 amd64 1:4.4.36-4 [89.8 kB] Get:198 http://mirror.einval.org/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.36-4 [119 kB] Get:199 http://mirror.einval.org/debian unstable/main amd64 libc6-dev amd64 2.37-15.1 [1905 kB] Get:200 http://mirror.einval.org/debian unstable/main amd64 libgomp1 amd64 14-20240315-1 [136 kB] Get:201 http://mirror.einval.org/debian unstable/main amd64 libitm1 amd64 14-20240315-1 [25.8 kB] Get:202 http://mirror.einval.org/debian unstable/main amd64 liblsan0 amd64 14-20240315-1 [1201 kB] Get:203 http://mirror.einval.org/debian unstable/main amd64 libtsan2 amd64 14-20240315-1 [2454 kB] Get:204 http://mirror.einval.org/debian unstable/main amd64 libubsan1 amd64 14-20240315-1 [1071 kB] Get:205 http://mirror.einval.org/debian unstable/main amd64 libhwasan0 amd64 14-20240315-1 [1485 kB] Get:206 http://mirror.einval.org/debian unstable/main amd64 libquadmath0 amd64 14-20240315-1 [147 kB] Get:207 http://mirror.einval.org/debian unstable/main amd64 libgcc-13-dev amd64 13.2.0-19 [2543 kB] Get:208 http://mirror.einval.org/debian unstable/main amd64 libgfortran5 amd64 14-20240315-1 [836 kB] Get:209 http://mirror.einval.org/debian unstable/main amd64 libopenblas0-pthread amd64 0.3.26+ds-1 [6807 kB] Get:210 http://mirror.einval.org/debian unstable/main amd64 liblapack3 amd64 3.12.0-3 [2407 kB] Get:211 http://mirror.einval.org/debian unstable/main amd64 libopenblas-pthread-dev amd64 0.3.26+ds-1 [4780 kB] Get:212 http://mirror.einval.org/debian unstable/main amd64 liblapack-dev amd64 3.12.0-3 [4880 kB] Get:213 http://mirror.einval.org/debian unstable/main amd64 libmmdb2-0 amd64 2.0.22-1+b1 [341 kB] Get:214 http://mirror.einval.org/debian unstable/main amd64 libmmdb2-dev amd64 2.0.22-1+b1 [92.9 kB] Get:215 http://mirror.einval.org/debian unstable/main amd64 libopenmm8.0t64 amd64 8.0.0+dfsg-6.1 [1018 kB] Get:216 http://mirror.einval.org/debian unstable/main amd64 libopenmm-dev amd64 8.0.0+dfsg-6.1 [338 kB] Get:217 http://mirror.einval.org/debian unstable/main arm64 libpthread-stubs0-dev arm64 0.4-1 [5336 B] Get:218 http://mirror.einval.org/debian unstable/main amd64 libxfixes-dev amd64 1:6.0.0-2 [24.7 kB] Get:219 http://mirror.einval.org/debian unstable/main amd64 libxi-dev amd64 2:1.8.1-1 [241 kB] Get:220 http://mirror.einval.org/debian unstable/main amd64 libxmu6 amd64 2:1.1.3-3+b1 [58.6 kB] Get:221 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.9-1 [19.7 kB] Get:222 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.2-3 [25.4 kB] Get:223 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.15-1 [143 kB] Get:224 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.7-1 [772 kB] Get:225 http://mirror.einval.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.9-1 [23.2 kB] Get:226 http://mirror.einval.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.2-3 [41.2 kB] Get:227 http://mirror.einval.org/debian unstable/main arm64 libxcb1-dev arm64 1.15-1 [182 kB] Get:228 http://mirror.einval.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.7-1 [864 kB] Get:229 http://mirror.einval.org/debian unstable/main arm64 libxmu-headers all 2:1.1.3-3 [68.5 kB] Get:230 http://mirror.einval.org/debian unstable/main amd64 libxmu-dev amd64 2:1.1.3-3+b1 [65.1 kB] Get:231 http://mirror.einval.org/debian unstable/main amd64 libsimbody3.7 amd64 3.7+dfsg-3 [3230 kB] Get:232 http://mirror.einval.org/debian unstable/main amd64 libsimbody-dev amd64 3.7+dfsg-3 [2727 kB] Get:233 http://mirror.einval.org/debian unstable/main amd64 libstdc++-13-dev amd64 13.2.0-19 [2212 kB] Get:234 http://mirror.einval.org/debian unstable/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get:235 http://mirror.einval.org/debian unstable/main amd64 zlib1g-dev amd64 1:1.3.dfsg-3.1 [918 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 203 MB in 3s (76.0 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11889 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-6+b2_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-6+b2) ... Selecting previously unselected package libncursesw6:arm64. Preparing to unpack .../001-libncursesw6_6.4+20240113-1_arm64.deb ... Unpacking libncursesw6:arm64 (6.4+20240113-1) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-4_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-4) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-4_arm64.deb ... Unpacking procps (2:4.0.4-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.22_all.deb ... Unpacking sensible-utils (0.0.22) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../005-libmagic-mgc_1%3a5.45-3_arm64.deb ... Unpacking libmagic-mgc (1:5.45-3) ... 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Unpacking libxmu-dev:amd64 (2:1.1.3-3+b1) ... Selecting previously unselected package libsimbody3.7:amd64. Preparing to unpack .../229-libsimbody3.7_3.7+dfsg-3_amd64.deb ... Unpacking libsimbody3.7:amd64 (3.7+dfsg-3) ... Selecting previously unselected package libsimbody-dev:amd64. Preparing to unpack .../230-libsimbody-dev_3.7+dfsg-3_amd64.deb ... Unpacking libsimbody-dev:amd64 (3.7+dfsg-3) ... Selecting previously unselected package libstdc++-13-dev:amd64. Preparing to unpack .../231-libstdc++-13-dev_13.2.0-19_amd64.deb ... Unpacking libstdc++-13-dev:amd64 (13.2.0-19) ... Selecting previously unselected package tao-pegtl-dev. Preparing to unpack .../232-tao-pegtl-dev_3.2.7-1_all.deb ... Unpacking tao-pegtl-dev (3.2.7-1) ... Selecting previously unselected package zlib1g-dev:amd64. Preparing to unpack .../233-zlib1g-dev_1%3a1.3.dfsg-3.1_amd64.deb ... Unpacking zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Selecting previously unselected package sbuild-build-depends-main-dummy:amd64. Preparing to unpack .../234-sbuild-build-depends-main-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000003-2) ... Setting up libexpat1:arm64 (2.6.2-1) ... Setting up libpipeline1:arm64 (1.5.7-1+b2) ... Setting up libfile-which-perl (1.27-2) ... Setting up libxau6:arm64 (1:1.0.9-1) ... Setting up libkeyutils1:arm64 (1.6.3-3) ... Setting up libicu72:arm64 (72.1-4+b1) ... Setting up bsdextrautils (2.39.3-10) ... Setting up libglvnd-core-dev:amd64 (1.7.0-1) ... Setting up libmagic-mgc (1:5.45-3) ... Setting up gcc-14-base:amd64 (14-20240315-1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libdebhelper-perl (13.14.1) ... Setting up libbrotli1:arm64 (1.1.0-2+b3) ... Setting up gemmi-dev:amd64 (0.6.4+ds-1) ... Setting up libuv1t64:arm64 (1.48.0-1.1) ... Setting up libmagic1t64:arm64 (1:5.45-3) ... Setting up x11-common (1:7.7+23) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libsensors-config (1:3.6.0-9) ... Setting up libpsl5t64:arm64 (0.21.2-1.1) ... Setting up libnghttp2-14:arm64 (1.59.0-1+b1) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14+b1) ... Setting up m4 (1.4.19-4) ... Setting up gcc-14-cross-base (14-20240127-1cross1) ... Setting up file (1:5.45-3) ... Setting up libyaml-perl (1.31-1) ... Setting up libgomp1-amd64-cross (14-20240127-1cross1) ... Setting up libpthread-stubs0-dev:amd64 (0.4-1) ... Setting up libpthread-stubs0-dev:arm64 (0.4-1) ... Setting up libfakeroot:arm64 (1.34-1) ... Setting up libelf1t64:arm64 (0.191-1) ... Setting up libkrb5support0:arm64 (1.20.1-6) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-4+b2) ... Setting up fakeroot (1.34-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up libitm1-amd64-cross (14-20240127-1cross1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up xtrans-dev (1.4.0-1) ... Setting up autotools-dev (20220109.1) ... Setting up libcom-err2t64:arm64 (1.47.0-2.3+b1) ... Setting up cross-config (2.6.20) ... Setting up gcc-13-base:amd64 (13.2.0-19) ... Setting up libatomic1-amd64-cross (14-20240127-1cross1) ... Setting up libx11-data (2:1.8.7-1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b3) ... Setting up gcc-13-cross-base (13.2.0-12cross1) ... Setting up libproc2-0:arm64 (2:4.0.4-4) ... Setting up libquadmath0-amd64-cross (14-20240127-1cross1) ... Setting up autopoint (0.21-14) ... Setting up libjsoncpp25:arm64 (1.9.5-6+b2) ... Setting up libc6-amd64-cross (2.37-12cross1) ... Setting up libncursesw6:arm64 (6.4+20240113-1) ... Setting up libk5crypto3:arm64 (1.20.1-6) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-4+b2) ... Setting up autoconf (2.71-3) ... Setting up gcc-13-x86-64-linux-gnu-base:arm64 (13.2.0-12cross1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.22) ... Setting up librhash0:arm64 (1.4.3-3+b1) ... Setting up libuchardet0:arm64 (0.0.8-1+b1) ... Setting up procps (2:4.0.4-4) ... Setting up libsub-override-perl (0.10-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.28.3-1) ... Setting up libkrb5-3:arm64 (1.20.1-6) ... Setting up libssh2-1t64:arm64 (1.11.0-4.1+b1) ... Setting up libgcc-s1-amd64-cross (14-20240127-1cross1) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libbsd0:arm64 (0.12.2-1) ... Setting up libdrm-common (2.4.120-2) ... Setting up libxml2:arm64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b2) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up binutils-x86-64-linux-gnu (2.42-3) ... Setting up libstdc++6-amd64-cross (14-20240127-1cross1) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2023.2-1) ... Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up libxdmcp6:arm64 (1:1.1.2-3) ... Setting up libxcb1:arm64 (1.15-1) ... Setting up gettext (0.21-14+b1) ... Setting up libxau-dev:arm64 (1:1.0.9-1) ... Setting up libtool (2.4.7-7) ... Setting up cpp-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up libasan8-amd64-cross (14-20240127-1cross1) ... Setting up liblsan0-amd64-cross (14-20240127-1cross1) ... Setting up libc6-dev-amd64-cross (2.37-12cross1) ... Setting up libtsan2-amd64-cross (14-20240127-1cross1) ... Setting up libldap-2.5-0:arm64 (2.5.16+dfsg-2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:arm64 (1:1.1.2-3) ... Setting up libhwasan0-amd64-cross (14-20240127-1cross1) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-6) ... Setting up libubsan1-amd64-cross (14-20240127-1cross1) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up groff-base (1.23.0-3+b1) ... Setting up libx11-6:arm64 (2:1.8.7-1) ... Setting up libarchive13t64:arm64 (3.7.2-1.1) ... Setting up cpp-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libxcb1-dev:arm64 (1.15-1) ... Setting up libcurl4t64:arm64 (8.6.0-4) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libx11-dev:arm64 (2:1.8.7-1) ... Setting up man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++-13-dev-amd64-cross (13.2.0-12cross1) ... Setting up cmake (3.28.3-1+b1) ... Setting up libxmu-headers (2:1.1.3-3) ... Setting up gcc-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up debhelper (13.14.1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-x86-64-linux-gnu (13.2.0-12cross1) ... Setting up gcc-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-x86-64-linux-gnu (4:13.2.0-7) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-amd64 (12.10) ... Setting up libgcc-s1:amd64 (14-20240315-1) ... Setting up libc6:amd64 (2.37-15.1) ... Setting up libffi8:amd64 (3.4.6-1) ... Setting up libdrm2:amd64 (2.4.120-2) ... Setting up libmd0:amd64 (1.1.0-2) ... Setting up libxshmfence1:amd64 (1.3-1) ... Setting up libhwasan0:amd64 (14-20240315-1) ... Setting up libasan8:amd64 (14-20240315-1) ... Setting up libtsan2:amd64 (14-20240315-1) ... Setting up libbsd0:amd64 (0.12.2-1) ... Setting up libstdc++6:amd64 (14-20240315-1) ... Setting up liblsan0:amd64 (14-20240315-1) ... Setting up libitm1:amd64 (14-20240315-1) ... Setting up libtinfo6:amd64 (6.4+20240113-1) ... Setting up libopenmm8.0t64:amd64 (8.0.0+dfsg-6.1) ... Setting up libdrm-amdgpu1:amd64 (2.4.120-2) ... Setting up libwayland-client0:amd64 (1.22.0-2.1+b1) ... Setting up libexpat1:amd64 (2.6.2-1) ... Setting up libwayland-server0:amd64 (1.22.0-2.1+b1) ... Setting up libzstd1:amd64 (1.5.5+dfsg2-2) ... Setting up libice6:amd64 (2:1.0.10-1) ... Setting up libxau6:amd64 (1:1.0.9-1) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libdrm-nouveau2:amd64 (2.4.120-2) ... Setting up libxcb1:amd64 (1.15-1) ... Setting up libicu72:amd64 (72.1-4+b1) ... Setting up libxcb-xfixes0:amd64 (1.15-1) ... Setting up libxau-dev:amd64 (1:1.0.9-1) ... Setting up liblzma5:amd64 (5.6.0-0.2) ... Setting up libice-dev:amd64 (2:1.0.10-1) ... Setting up libmmdb2-0:amd64 (2.0.22-1+b1) ... Setting up libdrm-radeon1:amd64 (2.4.120-2) ... Setting up libglvnd0:amd64 (1.7.0-1) ... Setting up libxcb-glx0:amd64 (1.15-1) ... Setting up libedit2:amd64 (3.1-20230828-1) ... Setting up zlib1g:amd64 (1:1.3.dfsg-3.1) ... Setting up libcrypt1:amd64 (1:4.4.36-4) ... Setting up libxcb-shm0:amd64 (1.15-1) ... Setting up libgomp1:amd64 (14-20240315-1) ... Setting up libopenmm-dev:amd64 (8.0.0+dfsg-6.1) ... Setting up libopengl0:amd64 (1.7.0-1) ... Setting up libelf1t64:amd64 (0.191-1) ... Setting up libxcb-present0:amd64 (1.15-1) ... Setting up libxdmcp-dev:amd64 (1:1.1.2-3) ... Setting up libz3-4:amd64 (4.8.12-3.1+b2) ... Setting up libgles2:amd64 (1.7.0-1) ... Setting up libxcb-sync1:amd64 (1.15-1) ... Setting up libgles1:amd64 (1.7.0-1) ... Setting up libquadmath0:amd64 (14-20240315-1) ... Setting up libatomic1:amd64 (14-20240315-1) ... Setting up libuuid1:amd64 (2.39.3-10) ... Setting up libmmdb2-dev:amd64 (2.0.22-1+b1) ... Setting up libsensors5:amd64 (1:3.6.0-9) ... Setting up libglapi-mesa:amd64 (24.0.3-1) ... Setting up libgfortran5:amd64 (14-20240315-1) ... Setting up libvulkan1:amd64 (1.3.275.0-1) ... Setting up libubsan1:amd64 (14-20240315-1) ... Setting up libxcb-dri2-0:amd64 (1.15-1) ... Setting up libgcc-13-dev:amd64 (13.2.0-19) ... Setting up libcrypt-dev:amd64 (1:4.4.36-4) ... Setting up libxcb-randr0:amd64 (1.15-1) ... Setting up libc6-dev:amd64 (2.37-15.1) ... Setting up libx11-6:amd64 (2:1.8.7-1) ... Setting up libglu1-mesa:amd64 (9.0.2-1.1) ... Setting up libopengl-dev:amd64 (1.7.0-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up libstdc++-13-dev:amd64 (13.2.0-19) ... Setting up libxcb-dri3-0:amd64 (1.15-1) ... Setting up libx11-xcb1:amd64 (2:1.8.7-1) ... Setting up libpciaccess0:amd64 (0.17-3) ... Setting up libopenblas0-pthread:amd64 (0.3.26+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/x86_64-linux-gnu/libblas.so.3 (libblas.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/x86_64-linux-gnu/liblapack.so.3 (liblapack.so.3-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/x86_64-linux-gnu/libopenblas.so.0 (libopenblas.so.0-x86_64-linux-gnu) in auto mode Setting up libxcb1-dev:amd64 (1.15-1) ... Setting up libgbm1:amd64 (24.0.3-1) ... Setting up libsm-dev:amd64 (2:1.2.3-1) ... Setting up libdrm-intel1:amd64 (2.4.120-2) ... Setting up libx11-dev:amd64 (2:1.8.7-1) ... Setting up libxext6:amd64 (2:1.3.4-1+b1) ... Setting up libxxf86vm1:amd64 (1:1.1.4-1+b2) ... Setting up libegl-mesa0:amd64 (24.0.3-1) ... Setting up libllvm17t64:amd64 (1:17.0.6-9) ... Setting up libxfixes3:amd64 (1:6.0.0-2) ... Setting up libxt6t64:amd64 (1:1.2.1-1.2) ... Setting up libxext-dev:amd64 (2:1.3.4-1+b1) ... Setting up zlib1g-dev:amd64 (1:1.3.dfsg-3.1) ... Setting up libegl1:amd64 (1.7.0-1) ... Setting up libopenblas-pthread-dev:amd64 (0.3.26+ds-1) ... update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/x86_64-linux-gnu/libblas.so (libblas.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/x86_64-linux-gnu/liblapack.so (liblapack.so-x86_64-linux-gnu) in auto mode update-alternatives: using /usr/lib/x86_64-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/x86_64-linux-gnu/libopenblas.so (libopenblas.so-x86_64-linux-gnu) in auto mode Setting up liblapack3:amd64 (3.12.0-3) ... Setting up libxmu6:amd64 (2:1.1.3-3+b1) ... Setting up libxi6:amd64 (2:1.8.1-1) ... Setting up libgl1-mesa-dri:amd64 (24.0.3-1) ... Setting up libxfixes-dev:amd64 (1:6.0.0-2) ... Setting up libxt-dev:amd64 (1:1.2.1-1.2) ... Setting up liblapack-dev:amd64 (3.12.0-3) ... Setting up libxi-dev:amd64 (2:1.8.1-1) ... Setting up libglx-mesa0:amd64 (24.0.3-1) ... Setting up libglx0:amd64 (1.7.0-1) ... Setting up libxmu-dev:amd64 (2:1.1.3-3+b1) ... Setting up libgl1:amd64 (1.7.0-1) ... Setting up libglut3.12:amd64 (3.4.0-1+b1) ... Setting up libsimbody3.7:amd64 (3.7+dfsg-3) ... Setting up libglx-dev:amd64 (1.7.0-1) ... Setting up libgl-dev:amd64 (1.7.0-1) ... Setting up libegl-dev:amd64 (1.7.0-1) ... Setting up libglu1-mesa-dev:amd64 (9.0.2-1.1) ... Setting up libgles-dev:amd64 (1.7.0-1) ... Setting up libglvnd-dev:amd64 (1.7.0-1) ... Setting up libgl1-mesa-dev:amd64 (24.0.3-1) ... Setting up libglut-dev:amd64 (3.4.0-1+b1) ... Setting up freeglut3-dev:amd64 (3.4.0-1+b1) ... Setting up libsimbody-dev:amd64 (3.7+dfsg-3) ... Setting up sbuild-build-depends-main-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (amd64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-7-arm64 #1 SMP Debian 6.1.20-1 (2023-03-19) arm64 (aarch64) Toolchain package versions: binutils_2.42-3 dpkg-dev_1.22.6 g++-13_13.2.0-19 gcc-13_13.2.0-19 libc6-dev_2.37-15.1 libstdc++-13-dev_13.2.0-19 libstdc++-13-dev-amd64-cross_13.2.0-12cross1 libstdc++6_14-20240315-1 libstdc++6-amd64-cross_14-20240127-1cross1 linux-libc-dev_6.7.9-2 Package versions: apt_2.7.13+b1 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 binutils_2.42-3 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Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.1t64, libsimtkmolmodel-plugins Architecture: any Version: 3.1.0-4.1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/molmodel Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev Package-List: libsimtkmolmodel-dev deb libdevel optional arch=any libsimtkmolmodel-plugins deb libs optional arch=any libsimtkmolmodel3.1t64 deb libs optional arch=any Checksums-Sha1: 5ad7cc7f74a13d8b57d5d4cb468aa48f3f67ad75 11118182 molmodel_3.1.0.orig.tar.gz efaae5b5d6d58f308d09b977cac013b9be6b0920 4668 molmodel_3.1.0-4.1.debian.tar.xz Checksums-Sha256: d9fef841ce0b5978a20c0fce77e7f74e2a360576388e564fbe84a15cb53fbedd 11118182 molmodel_3.1.0.orig.tar.gz 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CONFIG_SITE=/etc/dpkg-cross/cross-config.amd64 DEB_BUILD_OPTIONS=nocheck HOME=/var/lib/sbuild LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut OLDPWD=/ PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aamd64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.1.0-4.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Drung dpkg-architecture: warning: specified GNU system type x86_64-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture amd64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF cd obj-x86_64-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=x86_64 -DCMAKE_C_COMPILER=x86_64-linux-gnu-gcc -DCMAKE_CXX_COMPILER=x86_64-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/x86_64-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/x86_64-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/x86_64-linux-gnu -DBUILD_TESTING:BOOL=OFF -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF .. -- The C compiler identification is GNU 13.2.0 -- The CXX compiler identification is GNU 13.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/x86_64-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/x86_64-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMM: /usr/include -- Found ZLIB: /usr/lib/x86_64-linux-gnu/libz.so (found version "1.3") CMake Warning (dev) at CMakeLists.txt:277 (INCLUDE): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.28/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:277 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.5s) -- Generating done (0.0s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-x86_64-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-x86_64-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles /<>/obj-x86_64-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 3%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -c /<>/src/About.cpp [ 6%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -c /<>/src/AtomSubsystem.cpp In file included from /<>/src/AtomSubsystem.cpp:1: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/13/bits/specfun.h:43, from /usr/x86_64-linux-gnu/include/c++/13/cmath:3699, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/./include/molmodel/internal/AtomSubsystem.h:4: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -c /<>/src/Biotype.cpp [ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -c /<>/src/BondGeometry.cpp [ 15%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -c /<>/src/Compound.cpp In file included from /<>/src/CompoundAtom.h:36, from /<>/src/CompoundRep.h:42, from /<>/src/Compound.cpp:45: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/13/bits/specfun.h:43, from /usr/x86_64-linux-gnu/include/c++/13/cmath:3699, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/src/Compound.cpp:32: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 18%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -c /<>/src/CompoundSystem.cpp In file included from /<>/src/CompoundAtom.h:36, from /<>/src/CompoundRep.h:42, from /<>/src/CompoundSystem.cpp:3: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/bits/stl_algobase.h:65, from /usr/x86_64-linux-gnu/include/c++/13/bits/specfun.h:43, from /usr/x86_64-linux-gnu/include/c++/13/cmath:3699, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/./include/molmodel/internal/CompoundSystem.h:4, from /<>/src/CompoundSystem.cpp:1: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 21%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -c /<>/src/DuMMForceFieldSubsystem.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/src/DuMMForceFieldSubsystem.cpp:43: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/./include/molmodel/internal/common.h:40, from /<>/src/DuMMForceFieldSubsystem.cpp:40: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -c /<>/src/DuMMForceFieldSubsystemRep.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/src/DuMMForceFieldSubsystemRep.cpp:40: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/./include/molmodel/internal/common.h:40, from /<>/src/DuMMForceFieldSubsystemRep.cpp:38: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -c /<>/src/Element.cpp [ 31%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -c /<>/src/MolecularMechanicsSystem.cpp [ 34%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -c /<>/src/PDBReader.cpp [ 37%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -c /<>/src/Pdb.cpp [ 40%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -c /<>/src/PeriodicVmdReporter.cpp [ 43%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -c /<>/src/Representation.cpp [ 46%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -c /<>/src/RiboseMobilizer.cpp [ 50%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -c /<>/src/TinkerAmber99.cpp [ 53%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -c /<>/src/VanderWallSphere.cpp [ 56%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -c /<>/src/VelocityRescalingThermostat.cpp [ 59%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -c /<>/src/VmdConnection.cpp [ 62%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -c /<>/src/gbsa/CpuImplicitSolvent.cpp In file included from /<>/src/gbsa/CpuImplicitSolvent.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -c /<>/src/gbsa/CpuObc.cpp In file included from /<>/src/gbsa/CpuObc.cpp:26: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -c /<>/src/gbsa/ImplicitSolventParameters.cpp In file included from /<>/src/gbsa/ImplicitSolventParameters.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -c /<>/src/gbsa/ObcParameters.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/gbsa/ObcParameters.cpp:26: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -c /<>/src/gbsa/SimTKOpenMMCommon.cpp In file included from /<>/src/gbsa/SimTKOpenMMCommon.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -c /<>/src/gbsa/SimTKOpenMMLog.cpp In file included from /<>/src/gbsa/SimTKOpenMMLog.h:28, from /<>/src/gbsa/SimTKOpenMMLog.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -c /<>/src/gbsa/SimTKOpenMMUtilities.cpp In file included from /<>/src/gbsa/SimTKOpenMMUtilities.h:30, from /<>/src/gbsa/SimTKOpenMMUtilities.cpp:27: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -c /<>/src/gbsa/cpuObcInterface.cpp In file included from /<>/src/gbsa/SimTKOpenMMLog.h:28, from /<>/src/gbsa/cpuObcInterface.cpp:27: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/cpuObcInterface.h:34, from /<>/src/gbsa/cpuObcInterface.cpp:25: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -c /<>/src/imd.cpp [ 90%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o /usr/bin/x86_64-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -c /<>/src/vmdsock.cpp [ 93%] Linking CXX shared library libSimTKmolmodel.so /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.1 -o libSimTKmolmodel.so.3.1 CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o /usr/lib/x86_64-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/x86_64-linux-gnu/libz.so /usr/lib/x86_64-linux-gnu/libSimTKmath.so.3.7 /usr/lib/x86_64-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm /usr/bin/cmake -E cmake_symlink_library libSimTKmolmodel.so.3.1 libSimTKmolmodel.so.3.1 libSimTKmolmodel.so make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [ 93%] Built target SimTKmolmodel make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/depend make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' cd /<>/obj-x86_64-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/OpenMMPlugin /<>/obj-x86_64-linux-gnu /<>/obj-x86_64-linux-gnu/OpenMMPlugin /<>/obj-x86_64-linux-gnu/OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build make[3]: Entering directory '/<>/obj-x86_64-linux-gnu' [ 96%] Building CXX object OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o cd /<>/obj-x86_64-linux-gnu/OpenMMPlugin && /usr/bin/x86_64-linux-gnu-g++ -DOpenMMPlugin_shared_EXPORTS -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -MF CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o.d -o CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -c /<>/OpenMMPlugin/OpenMMPlugin.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/OpenMMPlugin/OpenMMPlugin.cpp:43: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/x86_64-linux-gnu/include/c++/13/string:49, from /usr/x86_64-linux-gnu/include/c++/13/bits/locale_classes.h:40, from /usr/x86_64-linux-gnu/include/c++/13/bits/ios_base.h:41, from /usr/x86_64-linux-gnu/include/c++/13/ios:44, from /usr/x86_64-linux-gnu/include/c++/13/istream:40, from /usr/x86_64-linux-gnu/include/c++/13/sstream:40, from /usr/x86_64-linux-gnu/include/c++/13/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/OpenMMPlugin/OpenMMPlugin.cpp:41: /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/x86_64-linux-gnu/include/c++/13/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [100%] Linking CXX shared library libOpenMMPlugin.so cd /<>/obj-x86_64-linux-gnu/OpenMMPlugin && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMPlugin_shared.dir/link.txt --verbose=1 /usr/bin/x86_64-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -fcf-protection -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -shared -Wl,-soname,libOpenMMPlugin.so -o libOpenMMPlugin.so CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -Wl,-rpath,/<>/obj-x86_64-linux-gnu: ../libSimTKmolmodel.so.3.1 /usr/lib/x86_64-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/x86_64-linux-gnu/libOpenMM.so /usr/lib/x86_64-linux-gnu/libSimTKmath.so.3.7 /usr/lib/x86_64-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so /usr/lib/x86_64-linux-gnu/libblas.so /usr/lib/x86_64-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-x86_64-linux-gnu' [100%] Built target OpenMMPlugin_shared make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-x86_64-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-x86_64-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-x86_64-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-x86_64-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-x86_64-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-x86_64-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so -- Installing: /<>/debian/tmp/usr/doc/api/Molmodel/html -- Installing: /<>/debian/tmp/usr/doc/MolmodelAPI.html -- Installing: /<>/debian/tmp/usr/include/molmodel/Molmodel.h -- Installing: /<>/debian/tmp/usr/include/molmodel/SimTKmolmodel.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/AtomSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Biotype.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Clonable.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Compound.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundModeler.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/DNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Element.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Exceptions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/GrinPointer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Ions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Ligands.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Linkage.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/NA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PDBReader.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Pdb.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Protein.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/RNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/RiboseMobilizer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Superpose.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VanderWallSphere.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VmdConnection.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VoxelHash.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Water.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/bondGeometry.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/common.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/units.h -- Installing: /<>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/pkgconfig/molmodel.pc -- Installing: /<>/debian/tmp/usr/lib/x86_64-linux-gnu/molmodel/plugins/libOpenMMPlugin.so -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/x86_64-linux-gnu/molmodel/plugins/libOpenMMPlugin.so" to "" make[1]: Leaving directory '/<>/obj-x86_64-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: symbol _ZN5gemmi15change_ccd_codeERNS_9StructureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_ used by debian/libsimtkmolmodel3.1t64/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi19remove_entity_typesERNS_9StructureE used by debian/libsimtkmolmodel3.1t64/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi25make_structure_from_blockERKNS_3cif5BlockE used by debian/libsimtkmolmodel3.1t64/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi16assign_subchainsERNS_9StructureEbb used by debian/libsimtkmolmodel3.1t64/usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64' in '../libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64-dbgsym' in '../libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins' in '../libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins-dbgsym' in '../libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb'. dpkg-genbuildinfo --build=any -O../molmodel_3.1.0-4.1_amd64.buildinfo dpkg-genchanges --build=any -O../molmodel_3.1.0-4.1_amd64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-03-18T22:14:38Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ molmodel_3.1.0-4.1_amd64.changes: --------------------------------- Format: 1.8 Date: Wed, 28 Feb 2024 20:17:19 +0000 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel-plugins-dbgsym libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64-dbgsym Built-For-Profiles: cross nocheck Architecture: amd64 Version: 3.1.0-4.1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Benjamin Drung Description: libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file libsimtkmolmodel-plugins - Plugins for C++ API for creating molecular models for SimTK libsimtkmolmodel3.1t64 - C++ API for creating molecular models for SimTK Closes: 1062945 Changes: molmodel (3.1.0-4.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. Closes: #1062945 Checksums-Sha1: 00b6d6496f8d4bde9bdcedd72f2c25f348668e6f 1863348 libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb df9c1b2fac4c69036f79836b449735c73609523e 572368 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 30e7890cd4876976da9b40b9d75d2910e4fbebc6 19772 libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 4cca9f4699fe07538887aa07fe4b8b35e4826254 13317240 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 25248760fc65f38df76801a1e4d93996de6a914c 671612 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb 251cde17d24a3207c2c7343392631d369e2a5539 9976 molmodel_3.1.0-4.1_amd64.buildinfo Checksums-Sha256: 28ee4dc3fda19c92b69fca53a3eb54a26c0578ebdffa27b953075c6ec1547d1d 1863348 libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb c5f9a52c8fa62d1fb6734af2d3b15c7c891cdaa9519ed2033c50f52194c8b169 572368 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 61bf3ea7e4ceb1a1ea957fee055f82037c5226fbdf229b805b5a1d54515a9c78 19772 libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 0777be12ca6a9a04749bc8f3c3199da4a71d5e88294a8fcb0c181d902dce5307 13317240 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 4d1e21d3e7162d0b4cd73cb5964fa174a474275dacd0b18467194bd3383f645e 671612 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb e0f92a2ae0e8373903dc5a5b2faae19f9ee8953363b5a12fbf218d421b8a31fd 9976 molmodel_3.1.0-4.1_amd64.buildinfo Files: f1117edf8bfa5f205456923898eb10ad 1863348 libdevel optional libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb 99204e87e3aaad68a7265ad73d50d198 572368 debug optional libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 5979b896bde33d67b87e6f8830c4bc14 19772 libs optional libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 956b541f83b3311390c23b2ad1b0a4c9 13317240 debug optional libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 690a1c89d3e94729b5bdf345a4c9ba17 671612 libs optional libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb 34f98a71b28a7f4b84ca8eb4ac15e7ad 9976 libs optional molmodel_3.1.0-4.1_amd64.buildinfo +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel-plugins-dbgsym libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64-dbgsym Architecture: amd64 Version: 3.1.0-4.1 Checksums-Md5: f1117edf8bfa5f205456923898eb10ad 1863348 libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb 99204e87e3aaad68a7265ad73d50d198 572368 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 5979b896bde33d67b87e6f8830c4bc14 19772 libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 956b541f83b3311390c23b2ad1b0a4c9 13317240 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 690a1c89d3e94729b5bdf345a4c9ba17 671612 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb Checksums-Sha1: 00b6d6496f8d4bde9bdcedd72f2c25f348668e6f 1863348 libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb df9c1b2fac4c69036f79836b449735c73609523e 572368 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 30e7890cd4876976da9b40b9d75d2910e4fbebc6 19772 libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 4cca9f4699fe07538887aa07fe4b8b35e4826254 13317240 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 25248760fc65f38df76801a1e4d93996de6a914c 671612 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb Checksums-Sha256: 28ee4dc3fda19c92b69fca53a3eb54a26c0578ebdffa27b953075c6ec1547d1d 1863348 libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb c5f9a52c8fa62d1fb6734af2d3b15c7c891cdaa9519ed2033c50f52194c8b169 572368 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_amd64.deb 61bf3ea7e4ceb1a1ea957fee055f82037c5226fbdf229b805b5a1d54515a9c78 19772 libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb 0777be12ca6a9a04749bc8f3c3199da4a71d5e88294a8fcb0c181d902dce5307 13317240 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb 4d1e21d3e7162d0b4cd73cb5964fa174a474275dacd0b18467194bd3383f645e 671612 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Mon, 18 Mar 2024 22:14:37 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), binutils (= 2.42-3), binutils-aarch64-linux-gnu (= 2.42-3), binutils-common (= 2.42-3), bsdextrautils (= 2.39.3-10), bsdutils (= 1:2.39.3-10), build-essential (= 12.10), bzip2 (= 1.0.8-5.1), cmake (= 3.28.3-1+b1), cmake-data (= 3.28.3-1), coreutils (= 9.4-3.1), cpp (= 4:13.2.0-7), cpp-13 (= 13.2.0-19), cpp-13-aarch64-linux-gnu (= 13.2.0-19), cpp-aarch64-linux-gnu (= 4:13.2.0-7), dash (= 0.5.12-6), debconf (= 1.5.86), debhelper (= 13.14.1), debianutils (= 5.17), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.6), dpkg-dev (= 1.22.6), dwz (= 0.15-1+b1), file (= 1:5.45-3), findutils (= 4.9.0-5), freeglut3-dev (= 3.4.0-1+b1), g++ (= 4:13.2.0-7), g++-13 (= 13.2.0-19), g++-13-aarch64-linux-gnu (= 13.2.0-19), g++-aarch64-linux-gnu (= 4:13.2.0-7), gcc (= 4:13.2.0-7), gcc-13 (= 13.2.0-19), gcc-13-aarch64-linux-gnu (= 13.2.0-19), gcc-13-base (= 13.2.0-19), gcc-14-base (= 14-20240315-1), gcc-aarch64-linux-gnu (= 4:13.2.0-7), gemmi-dev (= 0.6.4+ds-1), gettext (= 0.21-14+b1), gettext-base (= 0.21-14+b1), grep (= 3.11-4), groff-base (= 1.23.0-3+b1), gzip (= 1.12-1.1), hostname (= 3.23+nmu2), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.2-1.1), libasan8 (= 14-20240315-1), libatomic1 (= 14-20240315-1), libattr1 (= 1:2.5.2-1), libaudit-common (= 1:3.1.2-2.1), libaudit1 (= 1:3.1.2-2.1), libbinutils (= 2.42-3), libblkid1 (= 2.39.3-10), libbrotli1 (= 1.1.0-2+b3), libbsd0 (= 0.12.2-1), libbz2-1.0 (= 1.0.8-5.1), libc-bin (= 2.37-15.1), libc-dev-bin (= 2.37-15.1), libc6 (= 2.37-15.1), libc6-dev (= 2.37-15.1), libcap-ng0 (= 0.8.4-2), libcap2 (= 1:2.66-5), libcc1-0 (= 14-20240315-1), libcom-err2t64 (= 1.47.0-2.3+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.42-3), libctf0 (= 2.42-3), libcurl4t64 (= 8.6.0-4), libdb5.3t64 (= 5.3.28+dfsg2-5+b1), libdebconfclient0 (= 0.271+b2), libdebhelper-perl (= 13.14.1), libdpkg-perl (= 1.22.6), libdrm-amdgpu1 (= 2.4.120-2), libdrm-common (= 2.4.120-2), libdrm-intel1 (= 2.4.120-2), libdrm-nouveau2 (= 2.4.120-2), libdrm-radeon1 (= 2.4.120-2), libdrm2 (= 2.4.120-2), libedit2 (= 3.1-20230828-1), libegl-dev (= 1.7.0-1), libegl-mesa0 (= 24.0.3-1), libegl1 (= 1.7.0-1), libelf1t64 (= 0.191-1), libexpat1 (= 2.6.2-1), libffi8 (= 3.4.6-1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgbm1 (= 24.0.3-1), libgcc-13-dev (= 13.2.0-19), libgcc-s1 (= 14-20240315-1), libgcrypt20 (= 1.10.3-2), libgdbm-compat4t64 (= 1.23-5.1), libgdbm6t64 (= 1.23-5.1), libgfortran5 (= 14-20240315-1), libgl-dev (= 1.7.0-1), libgl1 (= 1.7.0-1), libgl1-mesa-dev (= 24.0.3-1), libgl1-mesa-dri (= 24.0.3-1), libglapi-mesa (= 24.0.3-1), libgles-dev (= 1.7.0-1), libgles1 (= 1.7.0-1), libgles2 (= 1.7.0-1), libglu1-mesa (= 9.0.2-1.1), libglu1-mesa-dev (= 9.0.2-1.1), libglut-dev (= 3.4.0-1+b1), libglut3.12 (= 3.4.0-1+b1), libglvnd-core-dev (= 1.7.0-1), libglvnd-dev (= 1.7.0-1), libglvnd0 (= 1.7.0-1), libglx-dev (= 1.7.0-1), libglx-mesa0 (= 24.0.3-1), libglx0 (= 1.7.0-1), libgmp10 (= 2:6.3.0+dfsg-2+b1), libgnutls30t64 (= 3.8.3-1.1+b1), libgomp1 (= 14-20240315-1), libgpg-error0 (= 1.47-3), libgprofng0 (= 2.42-3), libgssapi-krb5-2 (= 1.20.1-6), libhogweed6t64 (= 3.9.1-2.2), libhwasan0 (= 14-20240315-1), libice-dev (= 2:1.0.10-1), libice6 (= 2:1.0.10-1), libicu72 (= 72.1-4+b1), libidn2-0 (= 2.3.7-2), libisl23 (= 0.26-3+b2), libitm1 (= 14-20240315-1), libjansson4 (= 2.14-2+b2), libjsoncpp25 (= 1.9.5-6+b2), libk5crypto3 (= 1.20.1-6), libkeyutils1 (= 1.6.3-3), libkrb5-3 (= 1.20.1-6), libkrb5support0 (= 1.20.1-6), liblapack-dev (= 3.12.0-3), liblapack3 (= 3.12.0-3), libldap-2.5-0 (= 2.5.16+dfsg-2), libllvm17t64 (= 1:17.0.6-9), liblsan0 (= 14-20240315-1), liblz4-1 (= 1.9.4-1+b2), liblzma5 (= 5.6.0-0.2), libmagic-mgc (= 1:5.45-3), libmagic1t64 (= 1:5.45-3), libmd0 (= 1.1.0-2), libmmdb2-0 (= 2.0.22-1+b1), libmmdb2-dev (= 2.0.22-1+b1), libmount1 (= 2.39.3-10), libmpc3 (= 1.3.1-1+b2), libmpfr6 (= 4.2.1-1+b1), libncursesw6 (= 6.4+20240113-1), libnettle8t64 (= 3.9.1-2.2), libnghttp2-14 (= 1.59.0-1+b1), libnumber-compare-perl (= 0.03-3), libopenblas-pthread-dev (= 0.3.26+ds-1), libopenblas0-pthread (= 0.3.26+ds-1), libopengl-dev (= 1.7.0-1), libopengl0 (= 1.7.0-1), libopenmm-dev (= 8.0.0+dfsg-6.1), libopenmm8.0t64 (= 8.0.0+dfsg-6.1), libp11-kit0 (= 0.25.3-4), libpam-modules (= 1.5.3-6), libpam-modules-bin (= 1.5.3-6), libpam-runtime (= 1.5.3-6), libpam0g (= 1.5.3-6), libpciaccess0 (= 0.17-3), libpcre2-8-0 (= 10.42-4+b1), libperl5.38t64 (= 5.38.2-3.2), libpipeline1 (= 1.5.7-1+b2), libproc2-0 (= 2:4.0.4-4), libpsl5t64 (= 0.21.2-1.1), libpthread-stubs0-dev (= 0.4-1), libquadmath0 (= 14-20240315-1), librhash0 (= 1.4.3-3+b1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b3), libsasl2-2 (= 2.1.28+dfsg1-4+b2), libsasl2-modules-db (= 2.1.28+dfsg1-4+b2), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-2+b1), libsensors-config (= 1:3.6.0-9), libsensors5 (= 1:3.6.0-9), libsframe1 (= 2.42-3), libsimbody-dev (= 3.7+dfsg-3), libsimbody3.7 (= 3.7+dfsg-3), libsm-dev (= 2:1.2.3-1), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.39.3-10), libssh2-1t64 (= 1.11.0-4.1+b1), libssl3t64 (= 3.1.5-1.1), libstdc++-13-dev (= 13.2.0-19), libstdc++6 (= 14-20240315-1), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.4-1+b1), libtasn1-6 (= 4.19.0-3+b2), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20240113-1), libtool (= 2.4.7-7), libtsan2 (= 14-20240315-1), libubsan1 (= 14-20240315-1), libuchardet0 (= 0.0.8-1+b1), libudev1 (= 255.4-1+b1), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-10), libuv1t64 (= 1.48.0-1.1), libvulkan1 (= 1.3.275.0-1), libwayland-client0 (= 1.22.0-2.1+b1), libwayland-server0 (= 1.22.0-2.1+b1), libx11-6 (= 2:1.8.7-1), libx11-data (= 2:1.8.7-1), libx11-dev (= 2:1.8.7-1), libx11-xcb1 (= 2:1.8.7-1), libxau-dev (= 1:1.0.9-1), libxau6 (= 1:1.0.9-1), libxcb-dri2-0 (= 1.15-1), libxcb-dri3-0 (= 1.15-1), libxcb-glx0 (= 1.15-1), libxcb-present0 (= 1.15-1), libxcb-randr0 (= 1.15-1), libxcb-shm0 (= 1.15-1), libxcb-sync1 (= 1.15-1), libxcb-xfixes0 (= 1.15-1), libxcb1 (= 1.15-1), libxcb1-dev (= 1.15-1), libxdmcp-dev (= 1:1.1.2-3), libxdmcp6 (= 1:1.1.2-3), libxext-dev (= 2:1.3.4-1+b1), libxext6 (= 2:1.3.4-1+b1), libxfixes-dev (= 1:6.0.0-2), libxfixes3 (= 1:6.0.0-2), libxi-dev (= 2:1.8.1-1), libxi6 (= 2:1.8.1-1), libxml2 (= 2.9.14+dfsg-1.3+b2), libxmu-dev (= 2:1.1.3-3+b1), libxmu-headers (= 2:1.1.3-3), libxmu6 (= 2:1.1.3-3+b1), libxshmfence1 (= 1.3-1), libxt-dev (= 1:1.2.1-1.2), libxt6t64 (= 1:1.2.1-1.2), libxxf86vm1 (= 1:1.1.4-1+b2), libz3-4 (= 4.8.12-3.1+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.7.9-2), login (= 1:4.13+dfsg1-4), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-3), mawk (= 1.3.4.20240123-1), ncurses-base (= 6.4+20240113-1), ncurses-bin (= 6.4+20240113-1), patch (= 2.7.6-7), perl (= 5.38.2-3.2), perl-base (= 5.38.2-3.2), perl-modules-5.38 (= 5.38.2-3.2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-4), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.22), sysvinit-utils (= 3.08-7), tao-pegtl-dev (= 3.2.7-1), tar (= 1.35+dfsg-3), usrmerge (= 39), util-linux (= 2.39.3-10), x11-common (= 1:7.7+23), x11proto-dev (= 2023.2-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.6.0-0.2), zlib1g (= 1:1.3.dfsg-3.1), zlib1g-dev (= 1:1.3.dfsg-3.1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1709151439" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsimtkmolmodel-dev_3.1.0-4.1_amd64.deb ---------------------------------------- new Debian package, version 2.0. size 1863348 bytes: control archive=2300 bytes. 1163 bytes, 25 lines control 4026 bytes, 46 lines md5sums Package: libsimtkmolmodel-dev Source: molmodel Version: 3.1.0-4.1 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 2283 Depends: libsimtkmolmodel3.1t64 (= 3.1.0-4.1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK (development files) Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. . This package contains development files. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/ -rw-r--r-- root/root 3055 2022-11-29 09:21 ./usr/include/molmodel/Molmodel.h -rw-r--r-- root/root 4277 2022-11-29 09:21 ./usr/include/molmodel/SimTKmolmodel.h drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/molmodel/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/molmodel/internal/ -rw-r--r-- root/root 7528 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/AtomSubsystem.h -rw-r--r-- root/root 7496 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Biotype.h -rw-r--r-- root/root 3009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Clonable.h -rw-r--r-- root/root 86359 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Compound.h -rw-r--r-- root/root 7005 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundModeler.h -rw-r--r-- root/root 6082 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundSystem.h -rw-r--r-- root/root 22366 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DNA.h -rw-r--r-- root/root 70215 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h -rw-r--r-- root/root 19995 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Element.h -rw-r--r-- root/root 363 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Exceptions.h -rw-r--r-- root/root 6143 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/GrinPointer.h -rw-r--r-- root/root 15223 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ions.h -rw-r--r-- root/root 16871 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ligands.h -rw-r--r-- root/root 780 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Linkage.h -rw-r--r-- root/root 11934 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h -rw-r--r-- root/root 9510 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h -rw-r--r-- root/root 13907 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NA.h -rw-r--r-- root/root 3377 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h -rw-r--r-- root/root 4459 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PDBReader.h -rw-r--r-- root/root 19573 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Pdb.h -rw-r--r-- root/root 4301 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h -rw-r--r-- root/root 3549 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h -rw-r--r-- root/root 51009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Protein.h -rw-r--r-- root/root 38117 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RNA.h -rw-r--r-- root/root 5122 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RiboseMobilizer.h -rw-r--r-- root/root 8762 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Superpose.h -rw-r--r-- root/root 13560 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h -rw-r--r-- root/root 477 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanderWallSphere.h -rw-r--r-- root/root 11619 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h -rw-r--r-- root/root 935 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VmdConnection.h -rw-r--r-- root/root 4845 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VoxelHash.h -rw-r--r-- root/root 2851 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Water.h -rw-r--r-- root/root 3664 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/bondGeometry.h -rw-r--r-- root/root 4253 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/common.h -rw-r--r-- root/root 3429 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/units.h drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/molmodel/ -rw-r--r-- root/root 3061 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelConfig.cmake -rw-r--r-- root/root 2759 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelConfigVersion.cmake -rw-r--r-- root/root 1610 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelTargets-none.cmake -rw-r--r-- root/root 4361 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/cmake/molmodel/MolmodelTargets.cmake lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so -> libSimTKmolmodel.so.3.1 drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/pkgconfig/ -rw-r--r-- root/root 248 2024-02-28 20:17 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Source: molmodel Version: 3.1.0-4.1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debichem Team Installed-Size: 583 Depends: libsimtkmolmodel-plugins (= 3.1.0-4.1) Section: debug Priority: optional Description: debug symbols for libsimtkmolmodel-plugins Build-Ids: 08361d0d96f2e0f9eb282d820ffefd452764c90c drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/08/ -rw-r--r-- root/root 586560 2024-02-28 20:17 ./usr/lib/debug/.build-id/08/361d0d96f2e0f9eb282d820ffefd452764c90c.debug drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins-dbgsym -> libsimtkmolmodel-plugins libsimtkmolmodel-plugins_3.1.0-4.1_amd64.deb -------------------------------------------- new Debian package, version 2.0. size 19772 bytes: control archive=1088 bytes. 1253 bytes, 24 lines control 271 bytes, 3 lines md5sums Package: libsimtkmolmodel-plugins Source: molmodel Version: 3.1.0-4.1 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 64 Depends: libc6 (>= 2.14), libgcc-s1 (>= 3.0), libopenmm8.0t64 (>= 8.0.0+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://simtk.org/projects/molmodel Description: Plugins for C++ API for creating molecular models for SimTK Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. . This package provides Molmodel plugins. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/molmodel/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/molmodel/plugins/ -rw-r--r-- root/root 51816 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/molmodel/plugins/libOpenMMPlugin.so drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins/ -rw-r--r-- root/root 911 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins/changelog.Debian.gz -rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins/copyright libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_amd64.deb ------------------------------------------------- new Debian package, version 2.0. size 13317240 bytes: control archive=560 bytes. 421 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsimtkmolmodel3.1t64-dbgsym Source: molmodel Version: 3.1.0-4.1 Auto-Built-Package: debug-symbols Architecture: amd64 Maintainer: Debichem Team Installed-Size: 13503 Depends: libsimtkmolmodel3.1t64 (= 3.1.0-4.1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsimtkmolmodel3.1t64 Build-Ids: 9ed7472eed67a7688ace91e241fec4de6be61435 drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/9e/ -rw-r--r-- root/root 13816024 2024-02-28 20:17 ./usr/lib/debug/.build-id/9e/d7472eed67a7688ace91e241fec4de6be61435.debug drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64-dbgsym -> libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64_3.1.0-4.1_amd64.deb ------------------------------------------ new Debian package, version 2.0. size 671612 bytes: control archive=1236 bytes. 1284 bytes, 26 lines control 340 bytes, 4 lines md5sums 55 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libsimtkmolmodel3.1t64 Source: molmodel Version: 3.1.0-4.1 Architecture: amd64 Maintainer: Debichem Team Installed-Size: 2288 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libsimbody3.7 (>= 3.7+dfsg), libstdc++6 (>= 13.1), zlib1g (>= 1:1.2.6) Breaks: libsimtkmolmodel3.1 (<< 3.1.0-4.1) Replaces: libsimtkmolmodel3.1 Provides: libsimtkmolmodel3.1 (= 3.1.0-4.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/ -rw-r--r-- root/root 2325952 2024-02-28 20:17 ./usr/lib/x86_64-linux-gnu/libSimTKmolmodel.so.3.1 drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64/ -rw-r--r-- root/root 911 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64/changelog.Debian.gz -rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1t64/copyright drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 78 2024-02-28 20:17 ./usr/share/lintian/overrides/libsimtkmolmodel3.1t64 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1433 B] Get:5 copy:/<>/apt_archive ./ Packages [1512 B] Fetched 3560 B in 0s (198 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common t1utils unzip Suggested packages: isoquery libxml-parser-perl libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl The following NEW packages will be installed: ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-listing-perl libfont-ttf-perl libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:amd64 t1utils unzip 0 upgraded, 126 newly installed, 0 to remove and 0 not upgraded. Need to get 13.3 MB of archives. After this operation, 53.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [844 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.4 [12.8 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-3.1 [69.2 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.1.5-1.1 [1208 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20240203 [158 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 diffstat arm64 1.66-1 [31.6 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libassuan0 arm64 2.5.6-1 [47.3 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 libreadline8t64 arm64 8.2-3.1 [157 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gpgconf arm64 2.2.40-3 [558 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libsqlite3-0 arm64 3.45.2-1 [835 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 gpg arm64 2.2.40-3 [903 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 iso-codes all 4.16.0-1 [2936 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libaliased-perl all 0.34-3 [13.5 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 libapt-pkg-perl arm64 0.1.40+b5 [63.8 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-op-check-perl arm64 0.22-3+b1 [10.6 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 libdynaloader-functions-perl all 0.003-3 [12.7 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 libdevel-callchecker-perl arm64 0.008-2+b2 [15.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 libparams-classify-perl arm64 0.015-2+b3 [22.3 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 libmodule-runtime-perl all 0.016-2 [19.6 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 libtry-tiny-perl all 0.31-2 [22.6 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libmodule-implementation-perl all 0.09-2 [12.6 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-progressive-perl all 0.001013-3 [7496 B] Get:23 http://mirror.einval.org/debian unstable/main arm64 libvariable-magic-perl arm64 0.63-1+b3 [42.7 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libb-hooks-endofscope-perl all 0.28-1 [17.5 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libberkeleydb-perl arm64 0.64-2+b3 [120 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libcapture-tiny-perl all 0.48-2 [24.6 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libhtml-tagset-perl all 3.20-6 [11.7 kB] Get:28 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.27-1 [98.4 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.81-1+b2 [97.1 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.63-1 [217 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.08-3 [8588 B] Get:32 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b3 [35.2 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.46-1+b2 [13.6 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3 [23.4 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:41 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.37-1+b2 [127 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.59-1 [43.6 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b3 [31.2 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-3 [31.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.10-1.1 [11.1 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b3 [97.6 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.83-2+b3 [24.1 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b3 [28.3 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 6.45-1 [82.0 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.11-1 [33.1 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-1+b1 [328 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.085-1 [218 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.13-1 [10.7 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.77-1 [183 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.025-1 [11.4 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004005-1 [12.9 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.14-1 [37.7 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-2+b1 [49.2 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2+b1 [33.2 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:93 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:96 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.10-1+b5 [141 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b2 [11.2 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.27-1+b2 [12.3 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.144-1 [56.4 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b3 [17.4 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b2 [11.4 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b2 [41.6 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b2 [95.4 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b2 [97.6 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:109 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.39-1+b2 [56.3 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.29-2 [26.6 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b3 [24.4 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b3 [8680 B] Get:113 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.16-1+b2 [13.1 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2 [171 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:116 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b3 [72.2 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b2 [19.9 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.18-1 [114 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libyaml-0-2 arm64 0.2.5-1 [50.4 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.89+ds-1+b1 [33.2 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.11-1 [58.8 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-28 [157 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.117.0 [1052 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 13.3 MB in 0s (53.8 MB/s) Selecting previously unselected package netbase. (Reading database ... 23692 files and directories currently installed.) Preparing to unpack .../000-netbase_6.4_all.deb ... Unpacking netbase (6.4) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-3.1_all.deb ... Unpacking readline-common (8.2-3.1) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.1.5-1.1_arm64.deb ... Unpacking openssl (3.1.5-1.1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20240203_all.deb ... Unpacking ca-certificates (20240203) ... Selecting previously unselected package diffstat. Preparing to unpack .../004-diffstat_1.66-1_arm64.deb ... Unpacking diffstat (1.66-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../005-libassuan0_2.5.6-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.6-1) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../006-libreadline8t64_8.2-3.1_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-3.1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../007-gpgconf_2.2.40-3_arm64.deb ... Unpacking gpgconf (2.2.40-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../008-libsqlite3-0_3.45.2-1_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.45.2-1) ... 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Selecting previously unselected package libfile-basedir-perl. Preparing to unpack .../057-libfile-basedir-perl_0.09-2_all.deb ... Unpacking libfile-basedir-perl (0.09-2) ... Selecting previously unselected package libtimedate-perl. Preparing to unpack .../058-libtimedate-perl_2.3300-2_all.deb ... Unpacking libtimedate-perl (2.3300-2) ... Selecting previously unselected package libhttp-date-perl. Preparing to unpack .../059-libhttp-date-perl_6.06-1_all.deb ... Unpacking libhttp-date-perl (6.06-1) ... Selecting previously unselected package libfile-listing-perl. Preparing to unpack .../060-libfile-listing-perl_6.16-1_all.deb ... Unpacking libfile-listing-perl (6.16-1) ... Selecting previously unselected package libfont-ttf-perl. Preparing to unpack .../061-libfont-ttf-perl_1.06-2_all.deb ... Unpacking libfont-ttf-perl (1.06-2) ... Selecting previously unselected package libio-html-perl. Preparing to unpack .../062-libio-html-perl_1.004-3_all.deb ... 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Preparing to unpack .../106-libsort-versions-perl_1.62-3_all.deb ... Unpacking libsort-versions-perl (1.62-3) ... Selecting previously unselected package libxs-parse-keyword-perl. Preparing to unpack .../107-libxs-parse-keyword-perl_0.39-1+b2_arm64.deb ... Unpacking libxs-parse-keyword-perl (0.39-1+b2) ... Selecting previously unselected package libsyntax-keyword-try-perl. Preparing to unpack .../108-libsyntax-keyword-try-perl_0.29-2_arm64.deb ... Unpacking libsyntax-keyword-try-perl (0.29-2) ... Selecting previously unselected package libterm-readkey-perl. Preparing to unpack .../109-libterm-readkey-perl_2.38-2+b3_arm64.deb ... Unpacking libterm-readkey-perl (2.38-2+b3) ... Selecting previously unselected package libtext-levenshteinxs-perl. Preparing to unpack .../110-libtext-levenshteinxs-perl_0.03-5+b3_arm64.deb ... Unpacking libtext-levenshteinxs-perl (0.03-5+b3) ... Selecting previously unselected package libtext-markdown-discount-perl. 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Preparing to unpack .../123-unzip_6.0-28_arm64.deb ... Unpacking unzip (6.0-28) ... Selecting previously unselected package lintian. Preparing to unpack .../124-lintian_2.117.0_all.deb ... Unpacking lintian (2.117.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:amd64. Preparing to unpack .../125-sbuild-build-depends-lintian-dummy_0.invalid.0_amd64.deb ... Unpacking sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.40+b5) ... Setting up liblz1:arm64 (1.14-1) ... Setting up libberkeleydb-perl:arm64 (0.64-2+b3) ... Setting up plzip (1.11-1) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libunicode-utf8-perl (0.62-2+b2) ... Setting up libmouse-perl (2.5.10-1+b5) ... Setting up libdata-messagepack-perl (1.02-1+b3) ... Setting up libdynaloader-functions-perl (0.003-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.46-1+b2) ... Setting up libyaml-0-2:arm64 (0.2.5-1) ... Setting up libsub-identify-perl (0.14-3+b2) ... Setting up libcpanel-json-xs-perl:arm64 (4.37-1+b2) ... Setting up libhtml-tagset-perl (3.20-6) ... Setting up libdevel-size-perl (0.83-2+b3) ... Setting up unzip (6.0-28) ... Setting up libsqlite3-0:arm64 (3.45.2-1) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.89+ds-1+b1) ... Setting up libio-interactive-perl (1.025-1) ... Setting up libtry-tiny-perl (0.31-2) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up liblzo2-2:arm64 (2.10-2+b1) ... Setting up libtime-moment-perl (0.44-2+b3) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libassuan0:arm64 (2.5.6-1) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b2) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up patchutils (0.4.2-1) ... Setting up libjson-maybexs-perl (1.004005-1) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b3) ... Setting up libclass-data-inheritable-perl (0.08-3) ... Setting up libxs-parse-keyword-perl (0.39-1+b2) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-3) ... Setting up libperlio-utf8-strict-perl (0.010-1+b2) ... Setting up t1utils (1.41-4) ... Setting up diffstat (1.66-1) ... Setting up libvariable-magic-perl (0.63-1+b3) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b1) ... Setting up libparams-util-perl (1.102-3) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.48-2) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.27-1+b2) ... Setting up libsyntax-keyword-try-perl (0.29-2) ... Setting up libdata-validate-domain-perl (0.10-1.1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b2) ... Setting up libpath-tiny-perl (0.144-1) ... Setting up lzop (1.04-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.4) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b3) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b3) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.1.5-1.1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b3) ... Setting up libperlio-gzip-perl (0.20-1+b3) ... Setting up readline-common (8.2-3.1) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b2) ... Setting up libmarkdown2:arm64 (2.2.7-2+b1) ... Setting up liburi-perl (5.27-1) ... Setting up iso-codes (4.16.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b3) ... Setting up libnet-ssleay-perl:arm64 (1.94-1+b1) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.16-1+b2) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.008-2+b2) ... Setting up ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 146 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.2-3.1) ... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libhtml-parser-perl:arm64 (3.81-1+b2) ... Setting up gpgconf (2.2.40-3) ... Setting up libio-socket-ssl-perl (2.085-1) ... Setting up gpg (2.2.40-3) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (6.45-1) ... Setting up libhtml-form-perl (6.11-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b3) ... Setting up libcgi-pm-perl (4.63-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.59-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up libwww-perl (6.77-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.18-1) ... Setting up liblwp-protocol-https-perl (6.13-1) ... Setting up lintian (2.117.0) ... Setting up sbuild-build-depends-lintian-dummy:amd64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-15.1) ... Processing triggers for man-db (2.12.0-3) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20240203) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 290748 Build-Time: 988 Distribution: unstable Foreign Architectures: amd64 Host Architecture: amd64 Install-Time: 72 Job: molmodel_3.1.0-4.1 Lintian: pass Machine Architecture: arm64 Package: molmodel Package-Time: 1098 Source-Version: 3.1.0-4.1 Space: 290748 Status: successful Version: 3.1.0-4.1 -------------------------------------------------------------------------------- Finished at 2024-03-18T22:14:38Z Build needed 00:18:18, 290748k disk space