sbuild (Debian sbuild) 0.85.0 (04 January 2023) on mjolnir.einval.org +==============================================================================+ | molmodel 3.1.0-4.1 (i386) Tue, 08 Apr 2025 14:56:33 +0000 | +==============================================================================+ Package: molmodel Version: 3.1.0-4.1 Source Version: 3.1.0-4.1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Unpacking /home/helmut/.cache/sbuild/unstable-arm64-sbuild.tar.zst to /tmp/tmp.sbuild.P161Qgdp1D... I: NOTICE: Log filtering will replace 'sbuild-unshare-dummy-location' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-E9AIWi/resolver-KhbW2S' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian unstable InRelease [205 kB] Get:2 http://mirror.einval.org/debian unstable/main Sources [11.0 MB] Get:3 http://mirror.einval.org/debian unstable/main i386 Packages [9887 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 Packages [10.1 MB] Fetched 31.2 MB in 7s (4318 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libsystemd0 libudev1 make patch 4 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 1144 kB of archives. After this operation, 20.5 kB of additional disk space will be used. Get:1 http://mirror.einval.org/debian unstable/main arm64 libsystemd0 arm64 257.5-2 [421 kB] Get:2 http://mirror.einval.org/debian unstable/main arm64 libudev1 arm64 257.5-2 [143 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 make arm64 4.4.1-2 [452 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 patch arm64 2.8-1 [128 kB] Fetched 1144 kB in 0s (27.0 MB/s) (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12024 files and directories currently installed.) Preparing to unpack .../make_4.4.1-2_arm64.deb ... Unpacking make (4.4.1-2) over (4.4.1-1) ... Preparing to unpack .../archives/patch_2.8-1_arm64.deb ... Unpacking patch (2.8-1) over (2.7.6-7+b1) ... Setting up make (4.4.1-2) ... Setting up patch (2.8-1) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'molmodel' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/debichem-team/molmodel.git Please use: git clone https://salsa.debian.org/debichem-team/molmodel.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 11.1 MB of source archives. Get:1 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (dsc) [2238 B] Get:2 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (tar) [11.1 MB] Get:3 http://mirror.einval.org/debian unstable/main molmodel 3.1.0-4.1 (diff) [4668 B] Fetched 11.1 MB in 0s (28.2 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/molmodel-E9AIWi/molmodel-3.1.0' with '<>' I: NOTICE: Log filtering will replace 'build/molmodel-E9AIWi' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [848 B] Get:5 copy:/<>/apt_archive ./ Packages [890 B] Fetched 2347 B in 0s (93.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file freeglut3-dev:i386 g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gemmi-dev:i386 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1 libbsd0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2 libcrypt-dev:i386 libcrypt1:i386 libcurl4t64 libdebhelper-perl libdrm-amdgpu1:i386 libdrm-common libdrm-intel1:i386 libdrm2:i386 libedit2:i386 libelf1t64 libelf1t64:i386 libexpat1 libexpat1:i386 libfakeroot libffi8 libffi8:i386 libfile-stripnondeterminism-perl libgbm1:i386 libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgfortran5:i386 libgl-dev:i386 libgl1:i386 libgl1-mesa-dri:i386 libglu1-mesa:i386 libglu1-mesa-dev:i386 libglut-dev:i386 libglut3.12:i386 libglvnd0:i386 libglx-dev:i386 libglx-mesa0:i386 libglx0:i386 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2 libice-dev:i386 libice6:i386 libidn2-0 libitm1:i386 libitm1-i386-cross libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:i386 liblapack3:i386 libldap2 libllvm19:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libmd0:i386 libmmdb2-0:i386 libmmdb2-dev:i386 libncursesw6 libnghttp2-14 libnghttp3-9 libopenblas-pthread-dev:i386 libopenblas0-pthread:i386 libopengl-dev:i386 libopengl0:i386 libopenmm-dev:i386 libopenmm8.1:i386 libp11-kit0 libpciaccess0:i386 libpipeline1 libproc2-0 libpsl5t64 libquadmath0:i386 libquadmath0-i386-cross librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:i386 libsimbody-dev:i386 libsimbody3.7:i386 libsm-dev:i386 libsm6:i386 libssh2-1t64 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtinfo6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libuuid1:i386 libuv1t64 libvulkan1:i386 libwayland-server0:i386 libx11-6 libx11-6:i386 libx11-data libx11-dev libx11-dev:i386 libx11-xcb1:i386 libxau-dev libxau-dev:i386 libxau6 libxau6:i386 libxcb-dri3-0:i386 libxcb-glx0:i386 libxcb-present0:i386 libxcb-randr0:i386 libxcb-shm0:i386 libxcb-sync1:i386 libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxcb1-dev libxcb1-dev:i386 libxdmcp-dev libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386 libxext6:i386 libxfixes-dev:i386 libxfixes3:i386 libxi-dev:i386 libxi6:i386 libxml2 libxml2:i386 libxmu-dev:i386 libxmu-headers libxmu6:i386 libxshmfence1:i386 libxt-dev:i386 libxt6t64:i386 libxxf86vm1:i386 libz3-4:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db mesa-libgallium:i386 po-debconf procps sensible-utils tao-pegtl-dev uuid-dev:i386 x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc cmake-doc cmake-format elpa-cmake-mode ninja-build gcc-14-locales cpp-14-doc cpp-doc dh-make gcc-14-doc manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff lrzip glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 gnutls-bin krb5-doc krb5-user libice-doc:i386 liblapack-doc:i386 pciutils:i386 lm-sensors lm-sensors:i386 libsm-doc:i386 libstdc++-14-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk uuid-runtime:i386 libx11-doc libx11-doc:i386 libxcb-doc libxcb-doc:i386 libxext-doc:i386 libxt-doc:i386 m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 ca-certificates libarchive-cpio-perl krb5-locales libldap-common libgpm2 publicsuffix libsasl2-modules libltdl-dev mesa-vulkan-drivers:i386 | vulkan-icd:i386 libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cmake cmake-data cpp-14-i686-linux-gnu cpp-i686-linux-gnu crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file freeglut3-dev:i386 g++-14-i686-linux-gnu g++-i686-linux-gnu gcc-14-base:i386 gcc-14-cross-base gcc-14-i686-linux-gnu gcc-14-i686-linux-gnu-base gcc-i686-linux-gnu gemmi-dev:i386 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libarchive13t64 libasan8:i386 libasan8-i386-cross libatomic1:i386 libatomic1-i386-cross libbrotli1 libbsd0:i386 libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2 libcrypt-dev:i386 libcrypt1:i386 libcurl4t64 libdebhelper-perl libdrm-amdgpu1:i386 libdrm-common libdrm-intel1:i386 libdrm2:i386 libedit2:i386 libelf1t64 libelf1t64:i386 libexpat1 libexpat1:i386 libfakeroot libffi8 libffi8:i386 libfile-stripnondeterminism-perl libgbm1:i386 libgcc-14-dev:i386 libgcc-14-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgfortran5:i386 libgl-dev:i386 libgl1:i386 libgl1-mesa-dri:i386 libglu1-mesa:i386 libglu1-mesa-dev:i386 libglut-dev:i386 libglut3.12:i386 libglvnd0:i386 libglx-dev:i386 libglx-mesa0:i386 libglx0:i386 libgnutls30t64 libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2 libice-dev:i386 libice6:i386 libidn2-0 libitm1:i386 libitm1-i386-cross libjsoncpp26 libk5crypto3 libkeyutils1 libkrb5-3 libkrb5support0 liblapack-dev:i386 liblapack3:i386 libldap2 libllvm19:i386 liblzma5:i386 libmagic-mgc libmagic1t64 libmd0:i386 libmmdb2-0:i386 libmmdb2-dev:i386 libncursesw6 libnghttp2-14 libnghttp3-9 libopenblas-pthread-dev:i386 libopenblas0-pthread:i386 libopengl-dev:i386 libopengl0:i386 libopenmm-dev:i386 libopenmm8.1:i386 libp11-kit0 libpciaccess0:i386 libpipeline1 libproc2-0 libpsl5t64 libquadmath0:i386 libquadmath0-i386-cross librhash1 librtmp1 libsasl2-2 libsasl2-modules-db libsensors-config libsensors5:i386 libsimbody-dev:i386 libsimbody3.7:i386 libsm-dev:i386 libsm6:i386 libssh2-1t64 libstdc++-14-dev:i386 libstdc++-14-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libtasn1-6 libtinfo6:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libunistring5 libuuid1:i386 libuv1t64 libvulkan1:i386 libwayland-server0:i386 libx11-6 libx11-6:i386 libx11-data libx11-dev libx11-dev:i386 libx11-xcb1:i386 libxau-dev libxau-dev:i386 libxau6 libxau6:i386 libxcb-dri3-0:i386 libxcb-glx0:i386 libxcb-present0:i386 libxcb-randr0:i386 libxcb-shm0:i386 libxcb-sync1:i386 libxcb-xfixes0:i386 libxcb1 libxcb1:i386 libxcb1-dev libxcb1-dev:i386 libxdmcp-dev libxdmcp-dev:i386 libxdmcp6 libxdmcp6:i386 libxext-dev:i386 libxext6:i386 libxfixes-dev:i386 libxfixes3:i386 libxi-dev:i386 libxi6:i386 libxml2 libxml2:i386 libxmu-dev:i386 libxmu-headers libxmu6:i386 libxshmfence1:i386 libxt-dev:i386 libxt6t64:i386 libxxf86vm1:i386 libz3-4:i386 libzstd1:i386 linux-libc-dev-i386-cross m4 man-db mesa-libgallium:i386 po-debconf procps sbuild-build-depends-main-dummy:i386 sensible-utils tao-pegtl-dev uuid-dev:i386 x11-common x11proto-dev xorg-sgml-doctools xtrans-dev zlib1g:i386 zlib1g-dev:i386 0 upgraded, 201 newly installed, 0 to remove and 0 not upgraded. Need to get 189 MB of archives. After this operation, 805 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 libncursesw6 arm64 6.5+20250216-2 [124 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 libproc2-0 arm64 2:4.0.4-7 [62.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 procps arm64 2:4.0.4-7 [868 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 sensible-utils all 0.0.24 [24.8 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libmagic-mgc arm64 1:5.46-4 [337 kB] Get:7 http://mirror.einval.org/debian unstable/main arm64 libmagic1t64 arm64 1:5.46-4 [103 kB] Get:8 http://mirror.einval.org/debian unstable/main arm64 file arm64 1:5.46-4 [43.6 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 gettext-base arm64 0.23.1-1 [241 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 libuchardet0 arm64 0.0.8-1+b2 [69.2 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 groff-base arm64 1.23.0-7 [1129 kB] Get:12 http://mirror.einval.org/debian unstable/main arm64 bsdextrautils arm64 2.41-3 [93.6 kB] Get:13 http://mirror.einval.org/debian unstable/main arm64 libpipeline1 arm64 1.5.8-1 [40.2 kB] Get:14 http://mirror.einval.org/debian unstable/main arm64 man-db arm64 2.13.0-1 [1404 kB] Get:15 http://mirror.einval.org/debian unstable/main arm64 m4 arm64 1.4.19-7 [285 kB] Get:16 http://mirror.einval.org/debian unstable/main arm64 autoconf all 2.72-3 [493 kB] Get:17 http://mirror.einval.org/debian unstable/main arm64 autotools-dev all 20240727.1 [60.2 kB] Get:18 http://mirror.einval.org/debian unstable/main arm64 automake all 1:1.17-4 [862 kB] Get:19 http://mirror.einval.org/debian unstable/main arm64 autopoint all 0.23.1-1 [770 kB] Get:20 http://mirror.einval.org/debian unstable/main arm64 cmake-data all 3.31.6-2 [2268 kB] Get:21 http://mirror.einval.org/debian unstable/main arm64 libxml2 arm64 2.12.7+dfsg+really2.9.14-0.4 [629 kB] Get:22 http://mirror.einval.org/debian unstable/main arm64 libarchive13t64 arm64 3.7.4-1.1 [323 kB] Get:23 http://mirror.einval.org/debian unstable/main arm64 libbrotli1 arm64 1.1.0-2+b7 [308 kB] Get:24 http://mirror.einval.org/debian unstable/main arm64 libkrb5support0 arm64 1.21.3-5 [32.4 kB] Get:25 http://mirror.einval.org/debian unstable/main arm64 libcom-err2 arm64 1.47.2-1+b1 [24.2 kB] Get:26 http://mirror.einval.org/debian unstable/main arm64 libk5crypto3 arm64 1.21.3-5 [81.2 kB] Get:27 http://mirror.einval.org/debian unstable/main arm64 libkeyutils1 arm64 1.6.3-5 [9576 B] Get:28 http://mirror.einval.org/debian unstable/main arm64 libkrb5-3 arm64 1.21.3-5 [308 kB] Get:29 http://mirror.einval.org/debian unstable/main arm64 libgssapi-krb5-2 arm64 1.21.3-5 [127 kB] Get:30 http://mirror.einval.org/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:31 http://mirror.einval.org/debian unstable/main arm64 libidn2-0 arm64 2.3.8-2 [107 kB] Get:32 http://mirror.einval.org/debian unstable/main arm64 libsasl2-modules-db arm64 2.1.28+dfsg1-9 [20.1 kB] Get:33 http://mirror.einval.org/debian unstable/main arm64 libsasl2-2 arm64 2.1.28+dfsg1-9 [55.6 kB] Get:34 http://mirror.einval.org/debian unstable/main arm64 libldap2 arm64 2.6.9+dfsg-2 [179 kB] Get:35 http://mirror.einval.org/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1 [71.3 kB] Get:36 http://mirror.einval.org/debian unstable/main arm64 libnghttp3-9 arm64 1.8.0-1 [63.2 kB] Get:37 http://mirror.einval.org/debian unstable/main arm64 libpsl5t64 arm64 0.21.2-1.1+b1 [57.1 kB] Get:38 http://mirror.einval.org/debian unstable/main arm64 libffi8 arm64 3.4.7-1 [21.2 kB] Get:39 http://mirror.einval.org/debian unstable/main arm64 libp11-kit0 arm64 0.25.5-3 [409 kB] Get:40 http://mirror.einval.org/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:41 http://mirror.einval.org/debian unstable/main arm64 libgnutls30t64 arm64 3.8.9-2 [1374 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 librtmp1 arm64 2.4+20151223.gitfa8646d.1-2+b5 [56.8 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libssh2-1t64 arm64 1.11.1-1 [235 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libcurl4t64 arm64 8.13.0-1 [348 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libexpat1 arm64 2.7.1-1 [93.3 kB] Get:46 http://mirror.einval.org/debian unstable/main arm64 libjsoncpp26 arm64 1.9.6-3 [72.9 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 librhash1 arm64 1.4.5-1 [129 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libuv1t64 arm64 1.50.0-2 [148 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 cmake arm64 3.31.6-2 [9906 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu-base arm64 14.2.0-19cross1 [49.6 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 cpp-14-i686-linux-gnu arm64 14.2.0-19cross1 [10.4 MB] Get:52 http://mirror.einval.org/debian unstable/main arm64 cpp-i686-linux-gnu arm64 4:14.2.0-1 [4840 B] Get:53 http://mirror.einval.org/debian unstable/main arm64 binutils-i686-linux-gnu arm64 2.44-3 [1479 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 gcc-14-cross-base all 14.2.0-19cross1 [44.9 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libc6-i386-cross all 2.41-6cross2 [1423 kB] Get:56 http://mirror.einval.org/debian unstable/main arm64 libgcc-s1-i386-cross all 14.2.0-19cross1 [88.2 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libgomp1-i386-cross all 14.2.0-19cross1 [136 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libitm1-i386-cross all 14.2.0-19cross1 [26.9 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libatomic1-i386-cross all 14.2.0-19cross1 [7384 B] Get:60 http://mirror.einval.org/debian unstable/main arm64 libasan8-i386-cross all 14.2.0-19cross1 [2597 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libstdc++6-i386-cross all 14.2.0-19cross1 [719 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libubsan1-i386-cross all 14.2.0-19cross1 [1052 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libquadmath0-i386-cross all 14.2.0-19cross1 [231 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libgcc-14-dev-i386-cross all 14.2.0-19cross1 [2583 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 gcc-14-i686-linux-gnu arm64 14.2.0-19cross1 [20.0 MB] Get:66 http://mirror.einval.org/debian unstable/main arm64 gcc-i686-linux-gnu arm64 4:14.2.0-1 [1444 B] Get:67 http://mirror.einval.org/debian unstable/main arm64 linux-libc-dev-i386-cross all 6.12.17-1cross2 [2369 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libc6-dev-i386-cross all 2.41-6cross2 [1804 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libstdc++-14-dev-i386-cross all 14.2.0-19cross1 [2426 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 g++-14-i686-linux-gnu arm64 14.2.0-19cross1 [11.2 MB] Get:71 http://mirror.einval.org/debian unstable/main arm64 g++-i686-linux-gnu arm64 4:14.2.0-1 [1200 B] Get:72 http://mirror.einval.org/debian unstable/main arm64 crossbuild-essential-i386 all 12.12 [3544 B] Get:73 http://mirror.einval.org/debian unstable/main arm64 libdebhelper-perl all 13.24.2 [90.9 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libtool all 2.5.4-4 [539 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 dh-autoreconf all 20 [17.1 kB] Get:76 http://mirror.einval.org/debian unstable/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfile-stripnondeterminism-perl all 1.14.1-2 [19.7 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 dh-strip-nondeterminism all 1.14.1-2 [8620 B] Get:79 http://mirror.einval.org/debian unstable/main arm64 libelf1t64 arm64 0.192-4 [189 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 dwz arm64 0.15-1+b1 [102 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 gettext arm64 0.23.1-1 [1610 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 debhelper all 13.24.2 [919 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 libfakeroot arm64 1.37.1.1-1 [29.6 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 fakeroot arm64 1.37.1.1-1 [75.4 kB] Get:87 http://mirror.einval.org/debian unstable/main i386 gcc-14-base i386 14.2.0-19 [49.4 kB] Get:88 http://mirror.einval.org/debian unstable/main i386 libgcc-s1 i386 14.2.0-19 [88.2 kB] Get:89 http://mirror.einval.org/debian unstable/main i386 libc6 i386 2.41-6 [2719 kB] Get:90 http://mirror.einval.org/debian unstable/main i386 libglvnd0 i386 1.7.0-1+b2 [44.1 kB] Get:91 http://mirror.einval.org/debian unstable/main i386 libxau6 i386 1:1.0.11-1 [20.7 kB] Get:92 http://mirror.einval.org/debian unstable/main i386 libxdmcp6 i386 1:1.1.5-1 [28.2 kB] Get:93 http://mirror.einval.org/debian unstable/main i386 libxcb1 i386 1.17.0-2+b1 [148 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libx11-data all 2:1.8.12-1 [343 kB] Get:95 http://mirror.einval.org/debian unstable/main i386 libx11-6 i386 2:1.8.12-1 [838 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 libdrm-common all 2.4.124-2 [8288 B] Get:97 http://mirror.einval.org/debian unstable/main i386 libdrm2 i386 2.4.124-2 [41.9 kB] Get:98 http://mirror.einval.org/debian unstable/main i386 libexpat1 i386 2.7.1-1 [110 kB] Get:99 http://mirror.einval.org/debian unstable/main i386 libx11-xcb1 i386 2:1.8.12-1 [247 kB] Get:100 http://mirror.einval.org/debian unstable/main i386 libxcb-dri3-0 i386 1.17.0-2+b1 [107 kB] Get:101 http://mirror.einval.org/debian unstable/main i386 libxcb-glx0 i386 1.17.0-2+b1 [124 kB] Get:102 http://mirror.einval.org/debian unstable/main i386 libxcb-present0 i386 1.17.0-2+b1 [106 kB] Get:103 http://mirror.einval.org/debian unstable/main i386 libxcb-shm0 i386 1.17.0-2+b1 [105 kB] Get:104 http://mirror.einval.org/debian unstable/main i386 libxcb-xfixes0 i386 1.17.0-2+b1 [110 kB] Get:105 http://mirror.einval.org/debian unstable/main i386 libxext6 i386 2:1.3.4-1+b3 [52.5 kB] Get:106 http://mirror.einval.org/debian unstable/main i386 libxxf86vm1 i386 1:1.1.4-1+b4 [20.1 kB] Get:107 http://mirror.einval.org/debian unstable/main i386 libdrm-amdgpu1 i386 2.4.124-2 [25.4 kB] Get:108 http://mirror.einval.org/debian unstable/main i386 zlib1g i386 1:1.3.dfsg+really1.3.1-1+b1 [84.7 kB] Get:109 http://mirror.einval.org/debian unstable/main i386 libpciaccess0 i386 0.17-3+b3 [53.8 kB] Get:110 http://mirror.einval.org/debian unstable/main i386 libdrm-intel1 i386 2.4.124-2 [67.3 kB] Get:111 http://mirror.einval.org/debian unstable/main i386 libzstd1 i386 1.5.7+dfsg-1 [309 kB] Get:112 http://mirror.einval.org/debian unstable/main i386 libelf1t64 i386 0.192-4 [195 kB] Get:113 http://mirror.einval.org/debian unstable/main i386 libatomic1 i386 14.2.0-19 [7648 B] Get:114 http://mirror.einval.org/debian unstable/main i386 libmd0 i386 1.1.0-2+b1 [38.4 kB] Get:115 http://mirror.einval.org/debian unstable/main i386 libbsd0 i386 0.12.2-2 [134 kB] Get:116 http://mirror.einval.org/debian unstable/main i386 libtinfo6 i386 6.5+20250216-2 [350 kB] Get:117 http://mirror.einval.org/debian unstable/main i386 libedit2 i386 3.1-20250104-1 [98.1 kB] Get:118 http://mirror.einval.org/debian unstable/main i386 libffi8 i386 3.4.7-1 [21.4 kB] Get:119 http://mirror.einval.org/debian unstable/main i386 libstdc++6 i386 14.2.0-19 [765 kB] Get:120 http://mirror.einval.org/debian unstable/main i386 liblzma5 i386 5.8.1-1 [320 kB] Get:121 http://mirror.einval.org/debian unstable/main i386 libxml2 i386 2.12.7+dfsg+really2.9.14-0.4 [732 kB] Get:122 http://mirror.einval.org/debian unstable/main i386 libz3-4 i386 4.13.3-1 [9211 kB] Get:123 http://mirror.einval.org/debian unstable/main i386 libllvm19 i386 1:19.1.7-3 [30.4 MB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libsensors-config all 1:3.6.0-10 [14.6 kB] Get:125 http://mirror.einval.org/debian unstable/main i386 libsensors5 i386 1:3.6.0-10+b1 [35.8 kB] Get:126 http://mirror.einval.org/debian unstable/main i386 libxcb-randr0 i386 1.17.0-2+b1 [118 kB] Get:127 http://mirror.einval.org/debian unstable/main i386 libxcb-sync1 i386 1.17.0-2+b1 [109 kB] Get:128 http://mirror.einval.org/debian unstable/main i386 libxshmfence1 i386 1.3.3-1 [11.1 kB] Get:129 http://mirror.einval.org/debian unstable/main i386 mesa-libgallium i386 25.0.3-1 [9842 kB] Get:130 http://mirror.einval.org/debian unstable/main i386 libwayland-server0 i386 1.23.1-3 [36.1 kB] Get:131 http://mirror.einval.org/debian unstable/main i386 libgbm1 i386 25.0.3-1 [45.1 kB] Get:132 http://mirror.einval.org/debian unstable/main i386 libvulkan1 i386 1.4.309.0-1 [140 kB] Get:133 http://mirror.einval.org/debian unstable/main i386 libgl1-mesa-dri i386 25.0.3-1 [44.1 kB] Get:134 http://mirror.einval.org/debian unstable/main i386 libglx-mesa0 i386 25.0.3-1 [145 kB] Get:135 http://mirror.einval.org/debian unstable/main i386 libglx0 i386 1.7.0-1+b2 [36.8 kB] Get:136 http://mirror.einval.org/debian unstable/main i386 libgl1 i386 1.7.0-1+b2 [82.7 kB] Get:137 http://mirror.einval.org/debian unstable/main i386 libxi6 i386 2:1.8.2-1 [81.2 kB] Get:138 http://mirror.einval.org/debian unstable/main i386 libglut3.12 i386 3.4.0-4 [139 kB] Get:139 http://mirror.einval.org/debian unstable/main i386 libopengl0 i386 1.7.0-1+b2 [29.3 kB] Get:140 http://mirror.einval.org/debian unstable/main i386 libglu1-mesa i386 9.0.2-1.1+b3 [190 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 xorg-sgml-doctools all 1:1.11-1.1 [22.1 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 x11proto-dev all 2024.1-1 [603 kB] Get:143 http://mirror.einval.org/debian unstable/main i386 libxau-dev i386 1:1.0.11-1 [24.0 kB] Get:144 http://mirror.einval.org/debian unstable/main i386 libxdmcp-dev i386 1:1.1.5-1 [45.0 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 xtrans-dev all 1.4.0-1 [98.7 kB] Get:146 http://mirror.einval.org/debian unstable/main i386 libxcb1-dev i386 1.17.0-2+b1 [186 kB] Get:147 http://mirror.einval.org/debian unstable/main i386 libx11-dev i386 2:1.8.12-1 [926 kB] Get:148 http://mirror.einval.org/debian unstable/main i386 libglx-dev i386 1.7.0-1+b2 [15.8 kB] Get:149 http://mirror.einval.org/debian unstable/main i386 libgl-dev i386 1.7.0-1+b2 [101 kB] Get:150 http://mirror.einval.org/debian unstable/main i386 libopengl-dev i386 1.7.0-1+b2 [5384 B] Get:151 http://mirror.einval.org/debian unstable/main i386 libglu1-mesa-dev i386 9.0.2-1.1+b3 [234 kB] Get:152 http://mirror.einval.org/debian unstable/main i386 libxext-dev i386 2:1.3.4-1+b3 [108 kB] Get:153 http://mirror.einval.org/debian unstable/main arm64 x11-common all 1:7.7+24 [217 kB] Get:154 http://mirror.einval.org/debian unstable/main i386 libice6 i386 2:1.1.1-1 [67.8 kB] Get:155 http://mirror.einval.org/debian unstable/main i386 libuuid1 i386 2.41-3 [38.7 kB] Get:156 http://mirror.einval.org/debian unstable/main i386 libsm6 i386 2:1.2.6-1 [38.0 kB] Get:157 http://mirror.einval.org/debian unstable/main i386 libxt6t64 i386 1:1.2.1-1.2+b2 [194 kB] Get:158 http://mirror.einval.org/debian unstable/main i386 libice-dev i386 2:1.1.1-1 [77.6 kB] Get:159 http://mirror.einval.org/debian unstable/main i386 libcrypt1 i386 1:4.4.38-1 [95.7 kB] Get:160 http://mirror.einval.org/debian unstable/main i386 libcrypt-dev i386 1:4.4.38-1 [126 kB] Get:161 http://mirror.einval.org/debian unstable/main i386 libc6-dev i386 2.41-6 [1808 kB] Get:162 http://mirror.einval.org/debian unstable/main i386 uuid-dev i386 2.41-3 [49.1 kB] Get:163 http://mirror.einval.org/debian unstable/main i386 libsm-dev i386 2:1.2.6-1 [41.0 kB] Get:164 http://mirror.einval.org/debian unstable/main i386 libxt-dev i386 1:1.2.1-1.2+b2 [420 kB] Get:165 http://mirror.einval.org/debian unstable/main i386 libglut-dev i386 3.4.0-4 [168 kB] Get:166 http://mirror.einval.org/debian unstable/main i386 freeglut3-dev i386 3.4.0-4 [53.4 kB] Get:167 http://mirror.einval.org/debian unstable/main arm64 tao-pegtl-dev all 3.2.7-1 [69.4 kB] Get:168 http://mirror.einval.org/debian unstable/main i386 gemmi-dev i386 0.6.5+ds-3 [1198 kB] Get:169 http://mirror.einval.org/debian unstable/main i386 libasan8 i386 14.2.0-19 [2605 kB] Get:170 http://mirror.einval.org/debian unstable/main i386 libgomp1 i386 14.2.0-19 [138 kB] Get:171 http://mirror.einval.org/debian unstable/main i386 libitm1 i386 14.2.0-19 [27.4 kB] Get:172 http://mirror.einval.org/debian unstable/main i386 libubsan1 i386 14.2.0-19 [1054 kB] Get:173 http://mirror.einval.org/debian unstable/main i386 libquadmath0 i386 14.2.0-19 [231 kB] Get:174 http://mirror.einval.org/debian unstable/main i386 libgcc-14-dev i386 14.2.0-19 [2581 kB] Get:175 http://mirror.einval.org/debian unstable/main i386 libgfortran5 i386 14.2.0-19 [735 kB] Get:176 http://mirror.einval.org/debian unstable/main i386 libopenblas0-pthread i386 0.3.29+ds-3 [3840 kB] Get:177 http://mirror.einval.org/debian unstable/main i386 liblapack3 i386 3.12.1-2 [2198 kB] Get:178 http://mirror.einval.org/debian unstable/main i386 libopenblas-pthread-dev i386 0.3.29+ds-3 [3481 kB] Get:179 http://mirror.einval.org/debian unstable/main i386 liblapack-dev i386 3.12.1-2 [4458 kB] Get:180 http://mirror.einval.org/debian unstable/main i386 libmmdb2-0 i386 2.0.22-1+b2 [370 kB] Get:181 http://mirror.einval.org/debian unstable/main i386 libmmdb2-dev i386 2.0.22-1+b2 [92.9 kB] Get:182 http://mirror.einval.org/debian unstable/main i386 libopenmm8.1 i386 8.1.2+dfsg-11 [1104 kB] Get:183 http://mirror.einval.org/debian unstable/main i386 libopenmm-dev i386 8.1.2+dfsg-11 [350 kB] Get:184 http://mirror.einval.org/debian unstable/main i386 libxfixes3 i386 1:6.0.0-2+b4 [20.7 kB] Get:185 http://mirror.einval.org/debian unstable/main i386 libxfixes-dev i386 1:6.0.0-2+b4 [22.9 kB] Get:186 http://mirror.einval.org/debian unstable/main i386 libxi-dev i386 2:1.8.2-1 [244 kB] Get:187 http://mirror.einval.org/debian unstable/main i386 libxmu6 i386 2:1.1.3-3+b4 [60.8 kB] Get:188 http://mirror.einval.org/debian unstable/main arm64 libxau6 arm64 1:1.0.11-1 [20.6 kB] Get:189 http://mirror.einval.org/debian unstable/main arm64 libxdmcp6 arm64 1:1.1.5-1 [27.8 kB] Get:190 http://mirror.einval.org/debian unstable/main arm64 libxcb1 arm64 1.17.0-2+b1 [143 kB] Get:191 http://mirror.einval.org/debian unstable/main arm64 libx11-6 arm64 2:1.8.12-1 [795 kB] Get:192 http://mirror.einval.org/debian unstable/main arm64 libxau-dev arm64 1:1.0.11-1 [23.9 kB] Get:193 http://mirror.einval.org/debian unstable/main arm64 libxdmcp-dev arm64 1:1.1.5-1 [44.2 kB] Get:194 http://mirror.einval.org/debian unstable/main arm64 libxcb1-dev arm64 1.17.0-2+b1 [182 kB] Get:195 http://mirror.einval.org/debian unstable/main arm64 libx11-dev arm64 2:1.8.12-1 [883 kB] Get:196 http://mirror.einval.org/debian unstable/main arm64 libxmu-headers all 2:1.1.3-3 [68.5 kB] Get:197 http://mirror.einval.org/debian unstable/main i386 libxmu-dev i386 2:1.1.3-3+b4 [68.9 kB] Get:198 http://mirror.einval.org/debian unstable/main i386 libsimbody3.7 i386 3.7+dfsg-4 [3332 kB] Get:199 http://mirror.einval.org/debian unstable/main i386 libsimbody-dev i386 3.7+dfsg-4 [2726 kB] Get:200 http://mirror.einval.org/debian unstable/main i386 libstdc++-14-dev i386 14.2.0-19 [2443 kB] Get:201 http://mirror.einval.org/debian unstable/main i386 zlib1g-dev i386 1:1.3.dfsg+really1.3.1-1+b1 [916 kB] Preconfiguring packages ... Fetched 189 MB in 2s (85.7 MB/s) Selecting previously unselected package libncursesw6:arm64. (Reading database ... 12023 files and directories currently installed.) Preparing to unpack .../000-libncursesw6_6.5+20250216-2_arm64.deb ... Unpacking libncursesw6:arm64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:arm64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-7_arm64.deb ... Unpacking libproc2-0:arm64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-7_arm64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-4_arm64.deb ... Unpacking libmagic-mgc (1:5.46-4) ... Selecting previously unselected package libmagic1t64:arm64. Preparing to unpack .../005-libmagic1t64_1%3a5.46-4_arm64.deb ... Unpacking libmagic1t64:arm64 (1:5.46-4) ... Selecting previously unselected package file. Preparing to unpack .../006-file_1%3a5.46-4_arm64.deb ... Unpacking file (1:5.46-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../007-gettext-base_0.23.1-1_arm64.deb ... Unpacking gettext-base (0.23.1-1) ... Selecting previously unselected package libuchardet0:arm64. Preparing to unpack .../008-libuchardet0_0.0.8-1+b2_arm64.deb ... Unpacking libuchardet0:arm64 (0.0.8-1+b2) ... Selecting previously unselected package groff-base. Preparing to unpack .../009-groff-base_1.23.0-7_arm64.deb ... Unpacking groff-base (1.23.0-7) ... Selecting previously unselected package bsdextrautils. Preparing to unpack .../010-bsdextrautils_2.41-3_arm64.deb ... Unpacking bsdextrautils (2.41-3) ... Selecting previously unselected package libpipeline1:arm64. Preparing to unpack .../011-libpipeline1_1.5.8-1_arm64.deb ... Unpacking libpipeline1:arm64 (1.5.8-1) ... Selecting previously unselected package man-db. Preparing to unpack .../012-man-db_2.13.0-1_arm64.deb ... Unpacking man-db (2.13.0-1) ... Selecting previously unselected package m4. Preparing to unpack .../013-m4_1.4.19-7_arm64.deb ... Unpacking m4 (1.4.19-7) ... Selecting previously unselected package autoconf. Preparing to unpack .../014-autoconf_2.72-3_all.deb ... Unpacking autoconf (2.72-3) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../015-autotools-dev_20240727.1_all.deb ... Unpacking autotools-dev (20240727.1) ... Selecting previously unselected package automake. Preparing to unpack .../016-automake_1%3a1.17-4_all.deb ... Unpacking automake (1:1.17-4) ... Selecting previously unselected package autopoint. Preparing to unpack .../017-autopoint_0.23.1-1_all.deb ... Unpacking autopoint (0.23.1-1) ... Selecting previously unselected package cmake-data. 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Setting up libkeyutils1:arm64 (1.6.3-5) ... Setting up libxcb1:arm64 (1.17.0-2+b1) ... Setting up bsdextrautils (2.41-3) ... Setting up libmagic-mgc (1:5.46-4) ... Setting up gcc-14-base:i386 (14.2.0-19) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.44-3) ... Setting up libdebhelper-perl (13.24.2) ... Setting up libbrotli1:arm64 (1.1.0-2+b7) ... Setting up libuv1t64:arm64 (1.50.0-2) ... Setting up libmagic1t64:arm64 (1:5.46-4) ... Setting up x11-common (1:7.7+24) ... invoke-rc.d: could not determine current runlevel invoke-rc.d: WARNING: No init system and policy-rc.d missing! Defaulting to block. Setting up libsensors-config (1:3.6.0-10) ... Setting up libnghttp2-14:arm64 (1.64.0-1) ... Setting up gettext-base (0.23.1-1) ... Setting up m4 (1.4.19-7) ... Setting up gcc-14-i686-linux-gnu-base:arm64 (14.2.0-19cross1) ... Setting up gcc-14-cross-base (14.2.0-19cross1) ... Setting up libcom-err2:arm64 (1.47.2-1+b1) ... Setting up file (1:5.46-4) ... Setting up libfakeroot:arm64 (1.37.1.1-1) ... Setting up libelf1t64:arm64 (0.192-4) ... Setting up libkrb5support0:arm64 (1.21.3-5) ... Setting up libsasl2-modules-db:arm64 (2.1.28+dfsg1-9) ... Setting up fakeroot (1.37.1.1-1) ... update-alternatives: using /usr/bin/fakeroot-sysv to provide /usr/bin/fakeroot (fakeroot) in auto mode Setting up xtrans-dev (1.4.0-1) ... Setting up linux-libc-dev-i386-cross (6.12.17-1cross2) ... Setting up autotools-dev (20240727.1) ... Setting up libx11-data (2:1.8.12-1) ... Setting up libjsoncpp26:arm64 (1.9.6-3) ... Setting up libproc2-0:arm64 (2:4.0.4-7) ... Setting up libunistring5:arm64 (1.3-2) ... Setting up autopoint (0.23.1-1) ... Setting up libncursesw6:arm64 (6.5+20250216-2) ... Setting up libk5crypto3:arm64 (1.21.3-5) ... Setting up libsasl2-2:arm64 (2.1.28+dfsg1-9) ... Setting up autoconf (2.72-3) ... Setting up libnghttp3-9:arm64 (1.8.0-1) ... Setting up libffi8:arm64 (3.4.7-1) ... Setting up dwz (0.15-1+b1) ... Setting up sensible-utils (0.0.24) ... Setting up libuchardet0:arm64 (0.0.8-1+b2) ... Setting up procps (2:4.0.4-7) ... Setting up libtasn1-6:arm64 (4.20.0-2) ... Setting up libc6-i386-cross (2.41-6cross2) ... Setting up libx11-6:arm64 (2:1.8.12-1) ... Setting up xorg-sgml-doctools (1:1.11-1.1) ... Setting up cmake-data (3.31.6-2) ... Setting up librhash1:arm64 (1.4.5-1) ... Setting up libkrb5-3:arm64 (1.21.3-5) ... Setting up libssh2-1t64:arm64 (1.11.1-1) ... Setting up cpp-14-i686-linux-gnu (14.2.0-19cross1) ... Setting up libquadmath0-i386-cross (14.2.0-19cross1) ... Setting up libdrm-common (2.4.124-2) ... Setting up libxml2:arm64 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libldap2:arm64 (2.6.9+dfsg-2) ... Setting up tao-pegtl-dev (3.2.7-1) ... Setting up automake (1:1.17-4) ... update-alternatives: using /usr/bin/automake-1.17 to provide /usr/bin/automake (automake) in auto mode Setting up x11proto-dev (2024.1-1) ... Setting up libfile-stripnondeterminism-perl (1.14.1-2) ... Setting up gettext (0.23.1-1) ... Setting up libxau-dev:arm64 (1:1.0.11-1) ... Setting up libtool (2.5.4-4) ... Setting up libatomic1-i386-cross (14.2.0-19cross1) ... Setting up gemmi-dev:i386 (0.6.5+ds-3) ... Setting up libidn2-0:arm64 (2.3.8-2) ... Setting up libgomp1-i386-cross (14.2.0-19cross1) ... Setting up libc6-dev-i386-cross (2.41-6cross2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libgcc-s1-i386-cross (14.2.0-19cross1) ... Setting up dh-autoreconf (20) ... Setting up libxdmcp-dev:arm64 (1:1.1.5-1) ... Setting up libitm1-i386-cross (14.2.0-19cross1) ... Setting up libp11-kit0:arm64 (0.25.5-3) ... Setting up libgssapi-krb5-2:arm64 (1.21.3-5) ... Setting up dh-strip-nondeterminism (1.14.1-2) ... Setting up groff-base (1.23.0-7) ... Setting up cpp-i686-linux-gnu (4:14.2.0-1) ... Setting up libarchive13t64:arm64 (3.7.4-1.1) ... Setting up libgnutls30t64:arm64 (3.8.9-2) ... Setting up libxcb1-dev:arm64 (1.17.0-2+b1) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up libpsl5t64:arm64 (0.21.2-1.1+b1) ... Setting up libx11-dev:arm64 (2:1.8.12-1) ... Setting up man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libasan8-i386-cross (14.2.0-19cross1) ... Setting up libstdc++6-i386-cross (14.2.0-19cross1) ... Setting up librtmp1:arm64 (2.4+20151223.gitfa8646d.1-2+b5) ... Setting up libxmu-headers (2:1.1.3-3) ... Setting up libcurl4t64:arm64 (8.13.0-1) ... Setting up debhelper (13.24.2) ... Setting up libubsan1-i386-cross (14.2.0-19cross1) ... Setting up cmake (3.31.6-2) ... Setting up libgcc-14-dev-i386-cross (14.2.0-19cross1) ... Setting up gcc-14-i686-linux-gnu (14.2.0-19cross1) ... Setting up gcc-i686-linux-gnu (4:14.2.0-1) ... Setting up libstdc++-14-dev-i386-cross (14.2.0-19cross1) ... Setting up g++-14-i686-linux-gnu (14.2.0-19cross1) ... Setting up g++-i686-linux-gnu (4:14.2.0-1) ... Setting up crossbuild-essential-i386 (12.12) ... Setting up libgcc-s1:i386 (14.2.0-19) ... Setting up libc6:i386 (2.41-6) ... Setting up libffi8:i386 (3.4.7-1) ... Setting up libdrm2:i386 (2.4.124-2) ... Setting up libmd0:i386 (1.1.0-2+b1) ... Setting up libxshmfence1:i386 (1.3.3-1) ... Setting up libasan8:i386 (14.2.0-19) ... Setting up libbsd0:i386 (0.12.2-2) ... Setting up libstdc++6:i386 (14.2.0-19) ... Setting up libitm1:i386 (14.2.0-19) ... Setting up libtinfo6:i386 (6.5+20250216-2) ... Setting up libdrm-amdgpu1:i386 (2.4.124-2) ... Setting up libexpat1:i386 (2.7.1-1) ... Setting up libwayland-server0:i386 (1.23.1-3) ... Setting up libzstd1:i386 (1.5.7+dfsg-1) ... Setting up libice6:i386 (2:1.1.1-1) ... Setting up libxau6:i386 (1:1.0.11-1) ... Setting up libxdmcp6:i386 (1:1.1.5-1) ... Setting up libxcb1:i386 (1.17.0-2+b1) ... Setting up libxcb-xfixes0:i386 (1.17.0-2+b1) ... Setting up libxau-dev:i386 (1:1.0.11-1) ... Setting up liblzma5:i386 (5.8.1-1) ... Setting up libice-dev:i386 (2:1.1.1-1) ... Setting up libmmdb2-0:i386 (2.0.22-1+b2) ... Setting up libglvnd0:i386 (1.7.0-1+b2) ... Setting up libxcb-glx0:i386 (1.17.0-2+b1) ... Setting up libedit2:i386 (3.1-20250104-1) ... Setting up zlib1g:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:i386 (1:4.4.38-1) ... Setting up libxcb-shm0:i386 (1.17.0-2+b1) ... Setting up libgomp1:i386 (14.2.0-19) ... Setting up libopengl0:i386 (1.7.0-1+b2) ... Setting up libelf1t64:i386 (0.192-4) ... Setting up libxcb-present0:i386 (1.17.0-2+b1) ... Setting up libxdmcp-dev:i386 (1:1.1.5-1) ... Setting up libz3-4:i386 (4.13.3-1) ... Setting up libxcb-sync1:i386 (1.17.0-2+b1) ... Setting up libquadmath0:i386 (14.2.0-19) ... Setting up libatomic1:i386 (14.2.0-19) ... Setting up libuuid1:i386 (2.41-3) ... Setting up libmmdb2-dev:i386 (2.0.22-1+b2) ... Setting up libsensors5:i386 (1:3.6.0-10+b1) ... Setting up libgfortran5:i386 (14.2.0-19) ... Setting up libvulkan1:i386 (1.4.309.0-1) ... Setting up libubsan1:i386 (14.2.0-19) ... Setting up libcrypt-dev:i386 (1:4.4.38-1) ... Setting up libxcb-randr0:i386 (1.17.0-2+b1) ... Setting up libc6-dev:i386 (2.41-6) ... Setting up libx11-6:i386 (2:1.8.12-1) ... Setting up libglu1-mesa:i386 (9.0.2-1.1+b3) ... Setting up libopengl-dev:i386 (1.7.0-1+b2) ... Setting up libgcc-14-dev:i386 (14.2.0-19) ... Setting up libopenmm8.1:i386 (8.1.2+dfsg-11) ... Setting up libstdc++-14-dev:i386 (14.2.0-19) ... Setting up libsm6:i386 (2:1.2.6-1) ... Setting up libxml2:i386 (2.12.7+dfsg+really2.9.14-0.4) ... Setting up libxcb-dri3-0:i386 (1.17.0-2+b1) ... Setting up libllvm19:i386 (1:19.1.7-3) ... Setting up libx11-xcb1:i386 (2:1.8.12-1) ... Setting up libpciaccess0:i386 (0.17-3+b3) ... Setting up libopenblas0-pthread:i386 (0.3.29+ds-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so.3 to provide /usr/lib/i386-linux-gnu/libblas.so.3 (libblas.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so.3 to provide /usr/lib/i386-linux-gnu/liblapack.so.3 (liblapack.so.3-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so.0 to provide /usr/lib/i386-linux-gnu/libopenblas.so.0 (libopenblas.so.0-i386-linux-gnu) in auto mode Setting up libxcb1-dev:i386 (1.17.0-2+b1) ... Setting up libdrm-intel1:i386 (2.4.124-2) ... Setting up libx11-dev:i386 (2:1.8.12-1) ... Setting up libxext6:i386 (2:1.3.4-1+b3) ... Setting up libopenmm-dev:i386 (8.1.2+dfsg-11) ... Setting up libxxf86vm1:i386 (1:1.1.4-1+b4) ... Setting up libxfixes3:i386 (1:6.0.0-2+b4) ... Setting up uuid-dev:i386 (2.41-3) ... Setting up libxt6t64:i386 (1:1.2.1-1.2+b2) ... Setting up libxext-dev:i386 (2:1.3.4-1+b3) ... Setting up zlib1g-dev:i386 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libopenblas-pthread-dev:i386 (0.3.29+ds-3) ... update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libblas.so to provide /usr/lib/i386-linux-gnu/libblas.so (libblas.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/liblapack.so to provide /usr/lib/i386-linux-gnu/liblapack.so (liblapack.so-i386-linux-gnu) in auto mode update-alternatives: using /usr/lib/i386-linux-gnu/openblas-pthread/libopenblas.so to provide /usr/lib/i386-linux-gnu/libopenblas.so (libopenblas.so-i386-linux-gnu) in auto mode Setting up mesa-libgallium:i386 (25.0.3-1) ... Setting up liblapack3:i386 (3.12.1-2) ... Setting up libxmu6:i386 (2:1.1.3-3+b4) ... Setting up libxi6:i386 (2:1.8.2-1) ... Setting up libgbm1:i386 (25.0.3-1) ... Setting up libsm-dev:i386 (2:1.2.6-1) ... Setting up libgl1-mesa-dri:i386 (25.0.3-1) ... Setting up libxfixes-dev:i386 (1:6.0.0-2+b4) ... Setting up libxt-dev:i386 (1:1.2.1-1.2+b2) ... Setting up liblapack-dev:i386 (3.12.1-2) ... Setting up libxi-dev:i386 (2:1.8.2-1) ... Setting up libglx-mesa0:i386 (25.0.3-1) ... Setting up libglx0:i386 (1.7.0-1+b2) ... Setting up libxmu-dev:i386 (2:1.1.3-3+b4) ... Setting up libgl1:i386 (1.7.0-1+b2) ... Setting up libglut3.12:i386 (3.4.0-4) ... Setting up libsimbody3.7:i386 (3.7+dfsg-4) ... Setting up libglx-dev:i386 (1.7.0-1+b2) ... Setting up libgl-dev:i386 (1.7.0-1+b2) ... Setting up libglu1-mesa-dev:i386 (9.0.2-1.1+b3) ... Setting up libglut-dev:i386 (3.4.0-4) ... Setting up freeglut3-dev:i386 (3.4.0-4) ... Setting up libsimbody-dev:i386 (3.7+dfsg-4) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-28-arm64 #1 SMP Debian 6.1.119-1 (2024-11-22) arm64 (aarch64) Toolchain package versions: binutils_2.44-3 dpkg-dev_1.22.18 g++-14_14.2.0-19 gcc-14_14.2.0-19 libc6-dev_2.41-6 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-i386-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-i386-cross_14.2.0-19cross1 linux-libc-dev_6.12.21-1 Package versions: apt_3.0.0 apt-utils_3.0.0 autoconf_2.72-3 automake_1:1.17-4 autopoint_0.23.1-1 autotools-dev_20240727.1 base-files_13.7 base-passwd_3.6.7 bash_5.2.37-1.1+b2 binutils_2.44-3 binutils-aarch64-linux-gnu_2.44-3 binutils-common_2.44-3 binutils-i686-linux-gnu_2.44-3 bsdextrautils_2.41-3 bsdutils_1:2.41-3 build-essential_12.12 bzip2_1.0.8-6 cmake_3.31.6-2 cmake-data_3.31.6-2 coreutils_9.6-2 cpp_4:14.2.0-1 cpp-14_14.2.0-19 cpp-14-aarch64-linux-gnu_14.2.0-19 cpp-14-i686-linux-gnu_14.2.0-19cross1 cpp-aarch64-linux-gnu_4:14.2.0-1 cpp-i686-linux-gnu_4:14.2.0-1 crossbuild-essential-i386_12.12 dash_0.5.12-12 debconf_1.5.91 debhelper_13.24.2 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-2 diffutils_1:3.10-3 dpkg_1.22.18 dpkg-dev_1.22.18 dwz_0.15-1+b1 fakeroot_1.37.1.1-1 file_1:5.46-4 findutils_4.10.0-3 freeglut3-dev_3.4.0-4 g++_4:14.2.0-1 g++-14_14.2.0-19 g++-14-aarch64-linux-gnu_14.2.0-19 g++-14-i686-linux-gnu_14.2.0-19cross1 g++-aarch64-linux-gnu_4:14.2.0-1 g++-i686-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-19 gcc-14-aarch64-linux-gnu_14.2.0-19 gcc-14-base_14.2.0-19 gcc-14-cross-base_14.2.0-19cross1 gcc-14-i686-linux-gnu_14.2.0-19cross1 gcc-14-i686-linux-gnu-base_14.2.0-19cross1 gcc-aarch64-linux-gnu_4:14.2.0-1 gcc-i686-linux-gnu_4:14.2.0-1 gemmi-dev_0.6.5+ds-3 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4+b1 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg7.0_3.0.0 libarchive-zip-perl_1.68-1 libarchive13t64_3.7.4-1.1 libasan8_14.2.0-19 libasan8-i386-cross_14.2.0-19cross1 libatomic1_14.2.0-19 libatomic1-i386-cross_14.2.0-19cross1 libattr1_1:2.5.2-3 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b2 libbinutils_2.44-3 libblkid1_2.41-3 libbrotli1_1.1.0-2+b7 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libc-bin_2.41-6 libc-dev-bin_2.41-6 libc6_2.41-6 libc6-dev_2.41-6 libc6-dev-i386-cross_2.41-6cross2 libc6-i386-cross_2.41-6cross2 libcap-ng0_0.8.5-4+b1 libcap2_1:2.75-4 libcc1-0_14.2.0-19 libcom-err2_1.47.2-1+b1 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-3 libctf0_2.44-3 libcurl4t64_8.13.0-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.278 libdebhelper-perl_13.24.2 libdpkg-perl_1.22.18 libdrm-amdgpu1_2.4.124-2 libdrm-common_2.4.124-2 libdrm-intel1_2.4.124-2 libdrm2_2.4.124-2 libedit2_3.1-20250104-1 libelf1t64_0.192-4 libexpat1_2.7.1-1 libfakeroot_1.37.1.1-1 libffi8_3.4.7-1 libfile-stripnondeterminism-perl_1.14.1-2 libgbm1_25.0.3-1 libgcc-14-dev_14.2.0-19 libgcc-14-dev-i386-cross_14.2.0-19cross1 libgcc-s1_14.2.0-19 libgcc-s1-i386-cross_14.2.0-19cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgfortran5_14.2.0-19 libgl-dev_1.7.0-1+b2 libgl1_1.7.0-1+b2 libgl1-mesa-dri_25.0.3-1 libglu1-mesa_9.0.2-1.1+b3 libglu1-mesa-dev_9.0.2-1.1+b3 libglut-dev_3.4.0-4 libglut3.12_3.4.0-4 libglvnd0_1.7.0-1+b2 libglx-dev_1.7.0-1+b2 libglx-mesa0_25.0.3-1 libglx0_1.7.0-1+b2 libgmp10_2:6.3.0+dfsg-3 libgnutls30t64_3.8.9-2 libgomp1_14.2.0-19 libgomp1-i386-cross_14.2.0-19cross1 libgprofng0_2.44-3 libgssapi-krb5-2_1.21.3-5 libhogweed6t64_3.10.1-1 libhwasan0_14.2.0-19 libice-dev_2:1.1.1-1 libice6_2:1.1.1-1 libidn2-0_2.3.8-2 libisl23_0.27-1 libitm1_14.2.0-19 libitm1-i386-cross_14.2.0-19cross1 libjansson4_2.14-2+b3 libjsoncpp26_1.9.6-3 libk5crypto3_1.21.3-5 libkeyutils1_1.6.3-5 libkrb5-3_1.21.3-5 libkrb5support0_1.21.3-5 liblapack-dev_3.12.1-2 liblapack3_3.12.1-2 liblastlog2-2_2.41-3 libldap2_2.6.9+dfsg-2 libllvm19_1:19.1.7-3 liblsan0_14.2.0-19 liblz4-1_1.10.0-4 liblzma5_5.8.1-1 libmagic-mgc_1:5.46-4 libmagic1t64_1:5.46-4 libmd0_1.1.0-2+b1 libmmdb2-0_2.0.22-1+b2 libmmdb2-dev_2.0.22-1+b2 libmount1_2.41-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.2-1 libncursesw6_6.5+20250216-2 libnettle8t64_3.10.1-1 libnghttp2-14_1.64.0-1 libnghttp3-9_1.8.0-1 libopenblas-pthread-dev_0.3.29+ds-3 libopenblas0-pthread_0.3.29+ds-3 libopengl-dev_1.7.0-1+b2 libopengl0_1.7.0-1+b2 libopenmm-dev_8.1.2+dfsg-11 libopenmm8.1_8.1.2+dfsg-11 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-3 libpam-modules-bin_1.7.0-3 libpam-runtime_1.7.0-3 libpam0g_1.7.0-3 libpciaccess0_0.17-3+b3 libpcre2-8-0_10.45-1 libperl5.40_5.40.1-2 libpipeline1_1.5.8-1 libproc2-0_2:4.0.4-7 libpsl5t64_0.21.2-1.1+b1 libquadmath0_14.2.0-19 libquadmath0-i386-cross_14.2.0-19cross1 librhash1_1.4.5-1 librtmp1_2.4+20151223.gitfa8646d.1-2+b5 libsasl2-2_2.1.28+dfsg1-9 libsasl2-modules-db_2.1.28+dfsg1-9 libseccomp2_2.6.0-2 libselinux1_3.8.1-1 libsensors-config_1:3.6.0-10 libsensors5_1:3.6.0-10+b1 libsframe1_2.44-3 libsimbody-dev_3.7+dfsg-4 libsimbody3.7_3.7+dfsg-4 libsm-dev_2:1.2.6-1 libsm6_2:1.2.6-1 libsmartcols1_2.41-3 libsqlite3-0_3.46.1-2 libssh2-1t64_1.11.1-1 libssl3t64_3.4.1-1 libstdc++-14-dev_14.2.0-19 libstdc++-14-dev-i386-cross_14.2.0-19cross1 libstdc++6_14.2.0-19 libstdc++6-i386-cross_14.2.0-19cross1 libsystemd0_257.5-2 libtasn1-6_4.20.0-2 libtinfo6_6.5+20250216-2 libtool_2.5.4-4 libtsan2_14.2.0-19 libubsan1_14.2.0-19 libubsan1-i386-cross_14.2.0-19cross1 libuchardet0_0.0.8-1+b2 libudev1_257.5-2 libunistring5_1.3-2 libuuid1_2.41-3 libuv1t64_1.50.0-2 libvulkan1_1.4.309.0-1 libwayland-server0_1.23.1-3 libx11-6_2:1.8.12-1 libx11-data_2:1.8.12-1 libx11-dev_2:1.8.12-1 libx11-xcb1_2:1.8.12-1 libxau-dev_1:1.0.11-1 libxau6_1:1.0.11-1 libxcb-dri3-0_1.17.0-2+b1 libxcb-glx0_1.17.0-2+b1 libxcb-present0_1.17.0-2+b1 libxcb-randr0_1.17.0-2+b1 libxcb-shm0_1.17.0-2+b1 libxcb-sync1_1.17.0-2+b1 libxcb-xfixes0_1.17.0-2+b1 libxcb1_1.17.0-2+b1 libxcb1-dev_1.17.0-2+b1 libxdmcp-dev_1:1.1.5-1 libxdmcp6_1:1.1.5-1 libxext-dev_2:1.3.4-1+b3 libxext6_2:1.3.4-1+b3 libxfixes-dev_1:6.0.0-2+b4 libxfixes3_1:6.0.0-2+b4 libxi-dev_2:1.8.2-1 libxi6_2:1.8.2-1 libxml2_2.12.7+dfsg+really2.9.14-0.4 libxmu-dev_2:1.1.3-3+b4 libxmu-headers_2:1.1.3-3 libxmu6_2:1.1.3-3+b4 libxshmfence1_1.3.3-1 libxt-dev_1:1.2.1-1.2+b2 libxt6t64_1:1.2.1-1.2+b2 libxxf86vm1_1:1.1.4-1+b4 libxxhash0_0.8.3-2 libz3-4_4.13.3-1 libzstd1_1.5.7+dfsg-1 linux-libc-dev_6.12.21-1 linux-libc-dev-i386-cross_6.12.17-1cross2 login_1:4.16.0-2+really2.41-3 login.defs_1:4.17.4-1 m4_1.4.19-7 make_4.4.1-2 man-db_2.13.0-1 mawk_1.3.4.20250131-1 mesa-libgallium_25.0.3-1 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 openssl-provider-legacy_3.4.1-1 patch_2.8-1 perl_5.40.1-2 perl-base_5.40.1-2 perl-modules-5.40_5.40.1-2 po-debconf_1.0.21+nmu1 procps_2:4.0.4-7 rpcsvc-proto_1.4.3-1+b1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2+b1 sensible-utils_0.0.24 sqv_1.3.0-1 sysvinit-utils_3.14-4 tao-pegtl-dev_3.2.7-1 tar_1.35+dfsg-3.1 util-linux_2.41-3 uuid-dev_2.41-3 x11-common_1:7.7+24 x11proto-dev_2024.1-1 xorg-sgml-doctools_1:1.11-1.1 xtrans-dev_1.4.0-1 xz-utils_5.8.1-1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: molmodel Binary: libsimtkmolmodel-dev, libsimtkmolmodel3.1t64, libsimtkmolmodel-plugins Architecture: any Version: 3.1.0-4.1 Maintainer: Debichem Team Uploaders: Andrius Merkys , Homepage: https://simtk.org/projects/molmodel Standards-Version: 4.6.2 Vcs-Browser: https://salsa.debian.org/debichem-team/molmodel Vcs-Git: https://salsa.debian.org/debichem-team/molmodel.git Build-Depends: dpkg-dev (>= 1.22.5), cmake, debhelper-compat (= 13), gemmi-dev, libmmdb2-dev, libopenmm-dev, libopenblas-pthread-dev, libsimbody-dev, tao-pegtl-dev, zlib1g-dev Package-List: libsimtkmolmodel-dev deb libdevel optional arch=any libsimtkmolmodel-plugins deb libs optional arch=any libsimtkmolmodel3.1t64 deb libs optional arch=any Checksums-Sha1: 5ad7cc7f74a13d8b57d5d4cb468aa48f3f67ad75 11118182 molmodel_3.1.0.orig.tar.gz efaae5b5d6d58f308d09b977cac013b9be6b0920 4668 molmodel_3.1.0-4.1.debian.tar.xz Checksums-Sha256: d9fef841ce0b5978a20c0fce77e7f74e2a360576388e564fbe84a15cb53fbedd 11118182 molmodel_3.1.0.orig.tar.gz 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PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games PWD=/<> SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package molmodel dpkg-buildpackage: info: source version 3.1.0-4.1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Benjamin Drung dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF cd obj-i686-linux-gnu && DEB_PYTHON_INSTALL_LAYOUT=deb PKG_CONFIG=/usr/bin/i686-linux-gnu-pkg-config cmake -DCMAKE_INSTALL_PREFIX=/usr -DCMAKE_BUILD_TYPE=None -DCMAKE_INSTALL_SYSCONFDIR=/etc -DCMAKE_INSTALL_LOCALSTATEDIR=/var -DCMAKE_EXPORT_NO_PACKAGE_REGISTRY=ON -DCMAKE_FIND_USE_PACKAGE_REGISTRY=OFF -DCMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY=ON -DFETCHCONTENT_FULLY_DISCONNECTED=ON -DCMAKE_INSTALL_RUNSTATEDIR=/run -DCMAKE_SKIP_INSTALL_ALL_DEPENDENCY=ON "-GUnix Makefiles" -DCMAKE_VERBOSE_MAKEFILE=ON -DCMAKE_SYSTEM_NAME=Linux -DCMAKE_SYSTEM_PROCESSOR=i686 -DCMAKE_C_COMPILER=i686-linux-gnu-gcc -DCMAKE_CXX_COMPILER=i686-linux-gnu-g\+\+ -DPKG_CONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DPKGCONFIG_EXECUTABLE=/usr/bin/i686-linux-gnu-pkg-config -DQMAKE_EXECUTABLE=/usr/bin/i686-linux-gnu-qmake -DCMAKE_INSTALL_LIBDIR=lib/i386-linux-gnu -DBUILD_TESTING:BOOL=OFF -DBUILD_EXAMPLES=OFF -DBUILD_TESTING=OFF .. -- The C compiler identification is GNU 14.2.0 -- The CXX compiler identification is GNU 14.2.0 -- Detecting C compiler ABI info -- Detecting C compiler ABI info - done -- Check for working C compiler: /usr/bin/i686-linux-gnu-gcc - skipped -- Detecting C compile features -- Detecting C compile features - done -- Detecting CXX compiler ABI info -- Detecting CXX compiler ABI info - done -- Check for working CXX compiler: /usr/bin/i686-linux-gnu-g++ - skipped -- Detecting CXX compile features -- Detecting CXX compile features - done -- Found OpenMM: /usr/include -- Found ZLIB: /usr/lib/i386-linux-gnu/libz.so (found version "1.3.1") CMake Warning (dev) at CMakeLists.txt:277 (INCLUDE): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. This warning is for project developers. Use -Wno-dev to suppress it. CMake Warning (dev) at /usr/share/cmake-3.31/Modules/Dart.cmake:47 (message): Policy CMP0145 is not set: The Dart and FindDart modules are removed. Run "cmake --help-policy CMP0145" for policy details. Use the cmake_policy command to set the policy and suppress this warning. Call Stack (most recent call first): CMakeLists.txt:277 (INCLUDE) This warning is for project developers. Use -Wno-dev to suppress it. -- Could NOT find Doxygen (missing: DOXYGEN_EXECUTABLE) -- Configuring done (1.6s) -- Generating done (0.1s) CMake Warning: Manually-specified variables were not used by the project: CMAKE_EXPORT_NO_PACKAGE_REGISTRY CMAKE_FIND_PACKAGE_NO_PACKAGE_REGISTRY FETCHCONTENT_FULLY_DISCONNECTED PKGCONFIG_EXECUTABLE PKG_CONFIG_EXECUTABLE QMAKE_EXECUTABLE -- Build files have been written to: /<>/obj-i686-linux-gnu make[1]: Leaving directory '/<>' dh_auto_build -a cd obj-i686-linux-gnu && make -j1 "INSTALL=install --strip-program=true" VERBOSE=1 make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles /<>/obj-i686-linux-gnu//CMakeFiles/progress.marks make -f CMakeFiles/Makefile2 all make[2]: Entering directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<> /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/CMakeFiles/SimTKmolmodel.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f CMakeFiles/SimTKmolmodel.dir/build.make CMakeFiles/SimTKmolmodel.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 3%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o -c /<>/src/About.cpp [ 6%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o -c /<>/src/AtomSubsystem.cpp In file included from /<>/src/AtomSubsystem.cpp:1: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_algobase.h:65, from /usr/i686-linux-gnu/include/c++/14/bits/specfun.h:43, from /usr/i686-linux-gnu/include/c++/14/cmath:3906, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/./include/molmodel/internal/AtomSubsystem.h:4: /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 9%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o -c /<>/src/Biotype.cpp [ 12%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o -c /<>/src/BondGeometry.cpp [ 15%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o -c /<>/src/Compound.cpp In file included from /<>/src/CompoundAtom.h:36, from /<>/src/CompoundRep.h:42, from /<>/src/Compound.cpp:45: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_algobase.h:65, from /usr/i686-linux-gnu/include/c++/14/bits/specfun.h:43, from /usr/i686-linux-gnu/include/c++/14/cmath:3906, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/src/Compound.cpp:32: /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 18%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o -c /<>/src/CompoundSystem.cpp In file included from /<>/src/CompoundAtom.h:36, from /<>/src/CompoundRep.h:42, from /<>/src/CompoundSystem.cpp:3: /<>/./include/molmodel/internal/AtomSubsystem.h:180:23: warning: ‘template struct std::iterator’ is deprecated [-Wdeprecated-declarations] 180 | : public std::iterator > | ^~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/bits/stl_algobase.h:65, from /usr/i686-linux-gnu/include/c++/14/bits/specfun.h:43, from /usr/i686-linux-gnu/include/c++/14/cmath:3906, from /usr/include/simbody/SimTKcommon/internal/common.h:255, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /usr/include/simbody/SimTKsimbody.h:43, from /<>/./include/molmodel/internal/CompoundSystem.h:4, from /<>/src/CompoundSystem.cpp:1: /usr/i686-linux-gnu/include/c++/14/bits/stl_iterator_base_types.h:127:34: note: declared here 127 | struct _GLIBCXX17_DEPRECATED iterator | ^~~~~~~~ [ 21%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o -c /<>/src/DuMMForceFieldSubsystem.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/src/DuMMForceFieldSubsystem.cpp:43: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/./include/molmodel/internal/common.h:40, from /<>/src/DuMMForceFieldSubsystem.cpp:40: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 25%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o -c /<>/src/DuMMForceFieldSubsystemRep.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/src/DuMMForceFieldSubsystemRep.cpp:40: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/./include/molmodel/internal/common.h:40, from /<>/src/DuMMForceFieldSubsystemRep.cpp:38: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 28%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o -c /<>/src/Element.cpp [ 31%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o -c /<>/src/MolecularMechanicsSystem.cpp [ 34%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o -c /<>/src/PDBReader.cpp [ 37%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o -c /<>/src/Pdb.cpp [ 40%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o -c /<>/src/PeriodicVmdReporter.cpp [ 43%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o -c /<>/src/Representation.cpp [ 46%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o -c /<>/src/RiboseMobilizer.cpp [ 50%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o -c /<>/src/TinkerAmber99.cpp [ 53%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o -c /<>/src/VanderWallSphere.cpp [ 56%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o -c /<>/src/VelocityRescalingThermostat.cpp [ 59%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o -c /<>/src/VmdConnection.cpp [ 62%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o -c /<>/src/gbsa/CpuImplicitSolvent.cpp In file included from /<>/src/gbsa/CpuImplicitSolvent.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 65%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o -c /<>/src/gbsa/CpuObc.cpp In file included from /<>/src/gbsa/CpuObc.cpp:26: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 68%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o -c /<>/src/gbsa/ImplicitSolventParameters.cpp In file included from /<>/src/gbsa/ImplicitSolventParameters.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 71%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o -c /<>/src/gbsa/ObcParameters.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/gbsa/ObcParameters.cpp:26: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 75%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o -c /<>/src/gbsa/SimTKOpenMMCommon.cpp In file included from /<>/src/gbsa/SimTKOpenMMCommon.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 78%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o -c /<>/src/gbsa/SimTKOpenMMLog.cpp In file included from /<>/src/gbsa/SimTKOpenMMLog.h:28, from /<>/src/gbsa/SimTKOpenMMLog.cpp:25: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 81%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o -c /<>/src/gbsa/SimTKOpenMMUtilities.cpp In file included from /<>/src/gbsa/SimTKOpenMMUtilities.h:30, from /<>/src/gbsa/SimTKOpenMMUtilities.cpp:27: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/SimTKOpenMMCommon.h:28: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 84%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o -c /<>/src/gbsa/cpuObcInterface.cpp In file included from /<>/src/gbsa/SimTKOpenMMLog.h:28, from /<>/src/gbsa/cpuObcInterface.cpp:27: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/src/gbsa/cpuObcInterface.h:34, from /<>/src/gbsa/cpuObcInterface.cpp:25: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [ 87%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o -c /<>/src/imd.cpp [ 90%] Building CXX object CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o /usr/bin/i686-linux-gnu-g++ -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_BUILDING_SHARED_LIBRARY -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -DSimTKmolmodel_EXPORTS -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -MF CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o.d -o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o -c /<>/src/vmdsock.cpp [ 93%] Linking CXX shared library libSimTKmolmodel.so /usr/bin/cmake -E cmake_link_script CMakeFiles/SimTKmolmodel.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/SimTKmolmodel.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libSimTKmolmodel.so.3.1 -o libSimTKmolmodel.so.3.1 CMakeFiles/SimTKmolmodel.dir/src/About.cpp.o CMakeFiles/SimTKmolmodel.dir/src/AtomSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Biotype.cpp.o CMakeFiles/SimTKmolmodel.dir/src/BondGeometry.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Compound.cpp.o CMakeFiles/SimTKmolmodel.dir/src/CompoundSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/DuMMForceFieldSubsystemRep.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Element.cpp.o CMakeFiles/SimTKmolmodel.dir/src/MolecularMechanicsSystem.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PDBReader.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Pdb.cpp.o CMakeFiles/SimTKmolmodel.dir/src/PeriodicVmdReporter.cpp.o CMakeFiles/SimTKmolmodel.dir/src/Representation.cpp.o CMakeFiles/SimTKmolmodel.dir/src/RiboseMobilizer.cpp.o CMakeFiles/SimTKmolmodel.dir/src/TinkerAmber99.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VanderWallSphere.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VelocityRescalingThermostat.cpp.o CMakeFiles/SimTKmolmodel.dir/src/VmdConnection.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuImplicitSolvent.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/CpuObc.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ImplicitSolventParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/ObcParameters.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMCommon.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMLog.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/SimTKOpenMMUtilities.cpp.o CMakeFiles/SimTKmolmodel.dir/src/gbsa/cpuObcInterface.cpp.o CMakeFiles/SimTKmolmodel.dir/src/imd.cpp.o CMakeFiles/SimTKmolmodel.dir/src/vmdsock.cpp.o /usr/lib/i386-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/i386-linux-gnu/libz.so /usr/lib/i386-linux-gnu/libSimTKmath.so.3.7 /usr/lib/i386-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm /usr/bin/cmake -E cmake_symlink_library libSimTKmolmodel.so.3.1 libSimTKmolmodel.so.3.1 libSimTKmolmodel.so make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [ 93%] Built target SimTKmolmodel make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/depend make[3]: Entering directory '/<>/obj-i686-linux-gnu' cd /<>/obj-i686-linux-gnu && /usr/bin/cmake -E cmake_depends "Unix Makefiles" /<> /<>/OpenMMPlugin /<>/obj-i686-linux-gnu /<>/obj-i686-linux-gnu/OpenMMPlugin /<>/obj-i686-linux-gnu/OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/DependInfo.cmake "--color=" make[3]: Leaving directory '/<>/obj-i686-linux-gnu' make -f OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build.make OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/build make[3]: Entering directory '/<>/obj-i686-linux-gnu' [ 96%] Building CXX object OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o cd /<>/obj-i686-linux-gnu/OpenMMPlugin && /usr/bin/i686-linux-gnu-g++ -DOpenMMPlugin_shared_EXPORTS -DSimTK_MOLMODEL_AUTHORS=\"Christopher.Bruns_Michael.Sherman\" -DSimTK_MOLMODEL_COPYRIGHT_YEARS=\"2006-12\" -DSimTK_MOLMODEL_LIBRARY_NAME=SimTKmolmodel -DSimTK_MOLMODEL_MAJOR_VERSION=3 -DSimTK_MOLMODEL_MINOR_VERSION=1 -DSimTK_MOLMODEL_PATCH_VERSION=0 -DSimTK_MOLMODEL_SVN_REVISION=\"\" -I/<>/src -I/<>/./include -isystem /usr/include/simbody -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -MD -MT OpenMMPlugin/CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -MF CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o.d -o CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -c /<>/OpenMMPlugin/OpenMMPlugin.cpp In file included from /<>/src/gbsa/ObcParameters.h:28, from /<>/src/DuMMForceFieldSubsystemRep.h:50, from /<>/OpenMMPlugin/OpenMMPlugin.cpp:43: /<>/src/gbsa/SimTKOpenMMCommon.h:163:47: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 163 | class StringComparisonForMapPtr : public std::binary_function< std::string*, std::string*, bool > { | ^~~~~~~~~~~~~~~ In file included from /usr/i686-linux-gnu/include/c++/14/string:49, from /usr/i686-linux-gnu/include/c++/14/bits/locale_classes.h:40, from /usr/i686-linux-gnu/include/c++/14/bits/ios_base.h:41, from /usr/i686-linux-gnu/include/c++/14/ios:44, from /usr/i686-linux-gnu/include/c++/14/istream:40, from /usr/i686-linux-gnu/include/c++/14/sstream:40, from /usr/i686-linux-gnu/include/c++/14/complex:45, from /usr/include/simbody/SimTKcommon/internal/common.h:257, from /usr/include/simbody/SimTKcommon/basics.h:38, from /usr/include/simbody/SimTKcommon.h:32, from /<>/OpenMMPlugin/OpenMMPlugin.cpp:41: /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ /<>/src/gbsa/SimTKOpenMMCommon.h:172:44: warning: ‘template struct std::binary_function’ is deprecated [-Wdeprecated-declarations] 172 | class StringComparisonForMap : public std::binary_function< const std::string&, const std::string&, bool > { | ^~~~~~~~~~~~~~~ /usr/i686-linux-gnu/include/c++/14/bits/stl_function.h:131:12: note: declared here 131 | struct binary_function | ^~~~~~~~~~~~~~~ [100%] Linking CXX shared library libOpenMMPlugin.so cd /<>/obj-i686-linux-gnu/OpenMMPlugin && /usr/bin/cmake -E cmake_link_script CMakeFiles/OpenMMPlugin_shared.dir/link.txt --verbose=1 /usr/bin/i686-linux-gnu-g++ -fPIC -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,--dependency-file=CMakeFiles/OpenMMPlugin_shared.dir/link.d -Wl,-z,relro -shared -Wl,-soname,libOpenMMPlugin.so -o libOpenMMPlugin.so CMakeFiles/OpenMMPlugin_shared.dir/OpenMMPlugin.cpp.o -Wl,-rpath,/<>/obj-i686-linux-gnu: ../libSimTKmolmodel.so.3.1 /usr/lib/i386-linux-gnu/libSimTKsimbody.so.3.7 /usr/lib/i386-linux-gnu/libOpenMM.so /usr/lib/i386-linux-gnu/libSimTKmath.so.3.7 /usr/lib/i386-linux-gnu/libSimTKcommon.so.3.7 /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so /usr/lib/i386-linux-gnu/libblas.so /usr/lib/i386-linux-gnu/liblapack.so -lpthread -lrt -ldl -lm make[3]: Leaving directory '/<>/obj-i686-linux-gnu' [100%] Built target OpenMMPlugin_shared make[2]: Leaving directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -E cmake_progress_start /<>/obj-i686-linux-gnu/CMakeFiles 0 make[1]: Leaving directory '/<>/obj-i686-linux-gnu' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a dh_auto_install -a cd obj-i686-linux-gnu && make -j1 install DESTDIR=/<>/debian/tmp AM_UPDATE_INFO_DIR=no "INSTALL=install --strip-program=true" make[1]: Entering directory '/<>/obj-i686-linux-gnu' /usr/bin/cmake -S/<> -B/<>/obj-i686-linux-gnu --check-build-system CMakeFiles/Makefile.cmake 0 make -f CMakeFiles/Makefile2 preinstall make[2]: Entering directory '/<>/obj-i686-linux-gnu' make[2]: Nothing to be done for 'preinstall'. make[2]: Leaving directory '/<>/obj-i686-linux-gnu' Install the project... /usr/bin/cmake -P cmake_install.cmake -- Install configuration: "None" -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/libSimTKmolmodel.so -- Installing: /<>/debian/tmp/usr/doc/api/Molmodel/html -- Installing: /<>/debian/tmp/usr/doc/MolmodelAPI.html -- Installing: /<>/debian/tmp/usr/include/molmodel/Molmodel.h -- Installing: /<>/debian/tmp/usr/include/molmodel/SimTKmolmodel.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/AtomSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Biotype.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Clonable.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Compound.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundModeler.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/CompoundSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/DNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Element.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Exceptions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/GrinPointer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Ions.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Ligands.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Linkage.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/NA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PDBReader.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Pdb.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Protein.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/RNA.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/RiboseMobilizer.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Superpose.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VanderWallSphere.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VmdConnection.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/VoxelHash.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/Water.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/bondGeometry.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/common.h -- Installing: /<>/debian/tmp/usr/include/molmodel/molmodel/internal/units.h -- Installing: /<>/debian/tmp/usr/doc/MolmodelUsersGuide.pdf -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelConfig.cmake -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelConfigVersion.cmake -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelTargets.cmake -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelTargets-none.cmake -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/pkgconfig/molmodel.pc -- Installing: /<>/debian/tmp/usr/lib/i386-linux-gnu/molmodel/plugins/libOpenMMPlugin.so -- Set non-toolchain portion of runtime path of "/<>/debian/tmp/usr/lib/i386-linux-gnu/molmodel/plugins/libOpenMMPlugin.so" to "" make[1]: Leaving directory '/<>/obj-i686-linux-gnu' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_lintian -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 from: /lib/ld-linux.so.2 dpkg-shlibdeps: warning: diversions involved - output may be incorrect diversion by libc6 to: /lib/ld-linux.so.2.usr-is-merged dpkg-shlibdeps: warning: symbol _ZN5gemmi8GzStream4getsEPci used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi12MaybeGzippedD1Ev used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi12MaybeGzipped22uncompress_into_bufferEj used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi19remove_entity_typesERNS_9StructureE used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi25make_structure_from_blockERKNS_3cif5BlockE used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi12MaybeGzipped24get_uncompressing_streamEv used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi15change_ccd_codeERNS_9StructureERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEES9_ used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi8GzStream4getcEv used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi12MaybeGzippedC1ERKNSt7__cxx1112basic_stringIcSt11char_traitsIcESaIcEEE used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dpkg-shlibdeps: warning: symbol _ZN5gemmi16assign_subchainsERNS_9StructureEbb used by debian/libsimtkmolmodel3.1t64/usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 found in none of the libraries dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'libsimtkmolmodel-dev' in '../libsimtkmolmodel-dev_3.1.0-4.1_i386.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64' in '../libsimtkmolmodel3.1t64_3.1.0-4.1_i386.deb'. dpkg-deb: building package 'libsimtkmolmodel3.1t64-dbgsym' in '../libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_i386.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins' in '../libsimtkmolmodel-plugins_3.1.0-4.1_i386.deb'. dpkg-deb: building package 'libsimtkmolmodel-plugins-dbgsym' in '../libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_i386.deb'. dpkg-genbuildinfo --build=any -O../molmodel_3.1.0-4.1_i386.buildinfo dpkg-genchanges --build=any -O../molmodel_3.1.0-4.1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2025-04-08T15:19:06Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ --------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ molmodel_3.1.0-4.1_i386.changes: -------------------------------- Format: 1.8 Date: Wed, 28 Feb 2024 20:17:19 +0000 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel-plugins-dbgsym libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 3.1.0-4.1 Distribution: unstable Urgency: medium Maintainer: Debichem Team Changed-By: Benjamin Drung Description: libsimtkmolmodel-dev - C++ API for creating molecular models for SimTK (development file libsimtkmolmodel-plugins - Plugins for C++ API for creating molecular models for SimTK libsimtkmolmodel3.1t64 - C++ API for creating molecular models for SimTK Closes: 1062945 Changes: molmodel (3.1.0-4.1) unstable; urgency=medium . * Non-maintainer upload. * Rename libraries for 64-bit time_t transition. 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+------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: molmodel Binary: libsimtkmolmodel-dev libsimtkmolmodel-plugins libsimtkmolmodel-plugins-dbgsym libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64-dbgsym Architecture: i386 Version: 3.1.0-4.1 Checksums-Md5: 89031c28d8237ecfc17d030491e8feeb 1863388 libsimtkmolmodel-dev_3.1.0-4.1_i386.deb d8c64b63ffe5a656fc52bb822c24e006 573124 libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_i386.deb d9987ed8849befc16a6fa96b66d47acc 19776 libsimtkmolmodel-plugins_3.1.0-4.1_i386.deb 49c9a52187efe9b43e8959d49f77c804 13260372 libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_i386.deb ea9d15cc071e4cc88019f7c5730d4c62 705100 libsimtkmolmodel3.1t64_3.1.0-4.1_i386.deb Checksums-Sha1: 9b4686d1e5a658a4aace184ba4616853502f8c40 1863388 libsimtkmolmodel-dev_3.1.0-4.1_i386.deb 58c7138a18769d5e7cdd11ba2f607ef37bb95bd9 573124 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08 Apr 2025 15:19:05 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.72-3), automake (= 1:1.17-4), autopoint (= 0.23.1-1), autotools-dev (= 20240727.1), base-files (= 13.7), base-passwd (= 3.6.7), bash (= 5.2.37-1.1+b2), binutils (= 2.44-3), binutils-aarch64-linux-gnu (= 2.44-3), binutils-common (= 2.44-3), bsdextrautils (= 2.41-3), bsdutils (= 1:2.41-3), build-essential (= 12.12), bzip2 (= 1.0.8-6), cmake (= 3.31.6-2), cmake-data (= 3.31.6-2), coreutils (= 9.6-2), cpp (= 4:14.2.0-1), cpp-14 (= 14.2.0-19), cpp-14-aarch64-linux-gnu (= 14.2.0-19), cpp-aarch64-linux-gnu (= 4:14.2.0-1), dash (= 0.5.12-12), debconf (= 1.5.91), debhelper (= 13.24.2), debianutils (= 5.21), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.14.1-2), diffutils (= 1:3.10-3), dpkg (= 1.22.18), dpkg-dev (= 1.22.18), dwz (= 0.15-1+b1), file (= 1:5.46-4), findutils (= 4.10.0-3), freeglut3-dev (= 3.4.0-4), g++ (= 4:14.2.0-1), g++-14 (= 14.2.0-19), g++-14-aarch64-linux-gnu (= 14.2.0-19), g++-aarch64-linux-gnu (= 4:14.2.0-1), gcc (= 4:14.2.0-1), gcc-14 (= 14.2.0-19), gcc-14-aarch64-linux-gnu (= 14.2.0-19), gcc-14-base (= 14.2.0-19), gcc-aarch64-linux-gnu (= 4:14.2.0-1), gemmi-dev (= 0.6.5+ds-3), gettext (= 0.23.1-1), gettext-base (= 0.23.1-1), grep (= 3.11-4+b1), groff-base (= 1.23.0-7), gzip (= 1.13-1), hostname (= 3.25), init-system-helpers (= 1.68), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.2-2+b1), libarchive-zip-perl (= 1.68-1), libarchive13t64 (= 3.7.4-1.1), libasan8 (= 14.2.0-19), libatomic1 (= 14.2.0-19), libattr1 (= 1:2.5.2-3), libaudit-common (= 1:4.0.2-2), libaudit1 (= 1:4.0.2-2+b2), libbinutils (= 2.44-3), libblkid1 (= 2.41-3), libbrotli1 (= 1.1.0-2+b7), libbsd0 (= 0.12.2-2), libbz2-1.0 (= 1.0.8-6), libc-bin (= 2.41-6), libc-dev-bin (= 2.41-6), libc6 (= 2.41-6), libc6-dev (= 2.41-6), libcap-ng0 (= 0.8.5-4+b1), libcap2 (= 1:2.75-4), libcc1-0 (= 14.2.0-19), libcom-err2 (= 1.47.2-1+b1), libcrypt-dev (= 1:4.4.38-1), libcrypt1 (= 1:4.4.38-1), libctf-nobfd0 (= 2.44-3), libctf0 (= 2.44-3), libcurl4t64 (= 8.13.0-1), libdb5.3t64 (= 5.3.28+dfsg2-9), libdebconfclient0 (= 0.278), libdebhelper-perl (= 13.24.2), libdpkg-perl (= 1.22.18), libdrm-amdgpu1 (= 2.4.124-2), libdrm-common (= 2.4.124-2), libdrm-intel1 (= 2.4.124-2), libdrm2 (= 2.4.124-2), libedit2 (= 3.1-20250104-1), libelf1t64 (= 0.192-4), libexpat1 (= 2.7.1-1), libffi8 (= 3.4.7-1), libfile-stripnondeterminism-perl (= 1.14.1-2), libgbm1 (= 25.0.3-1), libgcc-14-dev (= 14.2.0-19), libgcc-s1 (= 14.2.0-19), libgdbm-compat4t64 (= 1.24-2), libgdbm6t64 (= 1.24-2), libgfortran5 (= 14.2.0-19), libgl-dev (= 1.7.0-1+b2), libgl1 (= 1.7.0-1+b2), libgl1-mesa-dri (= 25.0.3-1), libglu1-mesa (= 9.0.2-1.1+b3), libglu1-mesa-dev (= 9.0.2-1.1+b3), libglut-dev (= 3.4.0-4), libglut3.12 (= 3.4.0-4), libglvnd0 (= 1.7.0-1+b2), libglx-dev (= 1.7.0-1+b2), libglx-mesa0 (= 25.0.3-1), libglx0 (= 1.7.0-1+b2), libgmp10 (= 2:6.3.0+dfsg-3), libgnutls30t64 (= 3.8.9-2), libgomp1 (= 14.2.0-19), libgprofng0 (= 2.44-3), libgssapi-krb5-2 (= 1.21.3-5), libhogweed6t64 (= 3.10.1-1), libhwasan0 (= 14.2.0-19), libice-dev (= 2:1.1.1-1), libice6 (= 2:1.1.1-1), libidn2-0 (= 2.3.8-2), libisl23 (= 0.27-1), libitm1 (= 14.2.0-19), libjansson4 (= 2.14-2+b3), libjsoncpp26 (= 1.9.6-3), libk5crypto3 (= 1.21.3-5), libkeyutils1 (= 1.6.3-5), libkrb5-3 (= 1.21.3-5), libkrb5support0 (= 1.21.3-5), liblapack-dev (= 3.12.1-2), liblapack3 (= 3.12.1-2), liblastlog2-2 (= 2.41-3), libldap2 (= 2.6.9+dfsg-2), libllvm19 (= 1:19.1.7-3), liblsan0 (= 14.2.0-19), liblz4-1 (= 1.10.0-4), liblzma5 (= 5.8.1-1), libmagic-mgc (= 1:5.46-4), libmagic1t64 (= 1:5.46-4), libmd0 (= 1.1.0-2+b1), libmmdb2-0 (= 2.0.22-1+b2), libmmdb2-dev (= 2.0.22-1+b2), libmount1 (= 2.41-3), libmpc3 (= 1.3.1-1+b3), libmpfr6 (= 4.2.2-1), libncursesw6 (= 6.5+20250216-2), libnettle8t64 (= 3.10.1-1), libnghttp2-14 (= 1.64.0-1), libnghttp3-9 (= 1.8.0-1), libopenblas-pthread-dev (= 0.3.29+ds-3), libopenblas0-pthread (= 0.3.29+ds-3), libopengl-dev (= 1.7.0-1+b2), libopengl0 (= 1.7.0-1+b2), libopenmm-dev (= 8.1.2+dfsg-11), libopenmm8.1 (= 8.1.2+dfsg-11), libp11-kit0 (= 0.25.5-3), libpam-modules (= 1.7.0-3), libpam-modules-bin (= 1.7.0-3), libpam-runtime (= 1.7.0-3), libpam0g (= 1.7.0-3), libpciaccess0 (= 0.17-3+b3), libpcre2-8-0 (= 10.45-1), libperl5.40 (= 5.40.1-2), libpipeline1 (= 1.5.8-1), libproc2-0 (= 2:4.0.4-7), libpsl5t64 (= 0.21.2-1.1+b1), librhash1 (= 1.4.5-1), librtmp1 (= 2.4+20151223.gitfa8646d.1-2+b5), libsasl2-2 (= 2.1.28+dfsg1-9), libsasl2-modules-db (= 2.1.28+dfsg1-9), libseccomp2 (= 2.6.0-2), libselinux1 (= 3.8.1-1), libsensors-config (= 1:3.6.0-10), libsensors5 (= 1:3.6.0-10+b1), libsframe1 (= 2.44-3), libsimbody-dev (= 3.7+dfsg-4), libsimbody3.7 (= 3.7+dfsg-4), libsm-dev (= 2:1.2.6-1), libsm6 (= 2:1.2.6-1), libsmartcols1 (= 2.41-3), libsqlite3-0 (= 3.46.1-2), libssh2-1t64 (= 1.11.1-1), libssl3t64 (= 3.4.1-1), libstdc++-14-dev (= 14.2.0-19), libstdc++6 (= 14.2.0-19), libsystemd0 (= 257.5-2), libtasn1-6 (= 4.20.0-2), libtinfo6 (= 6.5+20250216-2), libtool (= 2.5.4-4), libtsan2 (= 14.2.0-19), libubsan1 (= 14.2.0-19), libuchardet0 (= 0.0.8-1+b2), libudev1 (= 257.5-2), libunistring5 (= 1.3-2), libuuid1 (= 2.41-3), libuv1t64 (= 1.50.0-2), libvulkan1 (= 1.4.309.0-1), libwayland-server0 (= 1.23.1-3), libx11-6 (= 2:1.8.12-1), libx11-data (= 2:1.8.12-1), libx11-dev (= 2:1.8.12-1), libx11-xcb1 (= 2:1.8.12-1), libxau-dev (= 1:1.0.11-1), libxau6 (= 1:1.0.11-1), libxcb-dri3-0 (= 1.17.0-2+b1), libxcb-glx0 (= 1.17.0-2+b1), libxcb-present0 (= 1.17.0-2+b1), libxcb-randr0 (= 1.17.0-2+b1), libxcb-shm0 (= 1.17.0-2+b1), libxcb-sync1 (= 1.17.0-2+b1), libxcb-xfixes0 (= 1.17.0-2+b1), libxcb1 (= 1.17.0-2+b1), libxcb1-dev (= 1.17.0-2+b1), libxdmcp-dev (= 1:1.1.5-1), libxdmcp6 (= 1:1.1.5-1), libxext-dev (= 2:1.3.4-1+b3), libxext6 (= 2:1.3.4-1+b3), libxfixes-dev (= 1:6.0.0-2+b4), libxfixes3 (= 1:6.0.0-2+b4), libxi-dev (= 2:1.8.2-1), libxi6 (= 2:1.8.2-1), libxml2 (= 2.12.7+dfsg+really2.9.14-0.4), libxmu-dev (= 2:1.1.3-3+b4), libxmu-headers (= 2:1.1.3-3), libxmu6 (= 2:1.1.3-3+b4), libxshmfence1 (= 1.3.3-1), libxt-dev (= 1:1.2.1-1.2+b2), libxt6t64 (= 1:1.2.1-1.2+b2), libxxf86vm1 (= 1:1.1.4-1+b4), libxxhash0 (= 0.8.3-2), libz3-4 (= 4.13.3-1), libzstd1 (= 1.5.7+dfsg-1), linux-libc-dev (= 6.12.21-1), m4 (= 1.4.19-7), make (= 4.4.1-2), man-db (= 2.13.0-1), mawk (= 1.3.4.20250131-1), mesa-libgallium (= 25.0.3-1), ncurses-base (= 6.5+20250216-2), ncurses-bin (= 6.5+20250216-2), openssl-provider-legacy (= 3.4.1-1), patch (= 2.8-1), perl (= 5.40.1-2), perl-base (= 5.40.1-2), perl-modules-5.40 (= 5.40.1-2), po-debconf (= 1.0.21+nmu1), procps (= 2:4.0.4-7), rpcsvc-proto (= 1.4.3-1+b1), sed (= 4.9-2+b1), sensible-utils (= 0.0.24), sysvinit-utils (= 3.14-4), tao-pegtl-dev (= 3.2.7-1), tar (= 1.35+dfsg-3.1), util-linux (= 2.41-3), uuid-dev (= 2.41-3), x11-common (= 1:7.7+24), x11proto-dev (= 2024.1-1), xorg-sgml-doctools (= 1:1.11-1.1), xtrans-dev (= 1.4.0-1), xz-utils (= 5.8.1-1), zlib1g (= 1:1.3.dfsg+really1.3.1-1+b1), zlib1g-dev (= 1:1.3.dfsg+really1.3.1-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="C.UTF-8" LC_COLLATE="C.UTF-8" LC_CTYPE="C.UTF-8" SOURCE_DATE_EPOCH="1709151439" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ libsimtkmolmodel-dev_3.1.0-4.1_i386.deb --------------------------------------- new Debian package, version 2.0. size 1863388 bytes: control archive=2300 bytes. 1162 bytes, 25 lines control 4016 bytes, 46 lines md5sums Package: libsimtkmolmodel-dev Source: molmodel Version: 3.1.0-4.1 Architecture: i386 Maintainer: Debichem Team Installed-Size: 2283 Depends: libsimtkmolmodel3.1t64 (= 3.1.0-4.1) Section: libdevel Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK (development files) Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. . This package contains development files. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/ -rw-r--r-- root/root 3055 2022-11-29 09:21 ./usr/include/molmodel/Molmodel.h -rw-r--r-- root/root 4277 2022-11-29 09:21 ./usr/include/molmodel/SimTKmolmodel.h drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/molmodel/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/include/molmodel/molmodel/internal/ -rw-r--r-- root/root 7528 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/AtomSubsystem.h -rw-r--r-- root/root 7496 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Biotype.h -rw-r--r-- root/root 3009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Clonable.h -rw-r--r-- root/root 86359 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Compound.h -rw-r--r-- root/root 7005 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundModeler.h -rw-r--r-- root/root 6082 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/CompoundSystem.h -rw-r--r-- root/root 22366 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DNA.h -rw-r--r-- root/root 70215 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/DuMMForceFieldSubsystem.h -rw-r--r-- root/root 19995 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Element.h -rw-r--r-- root/root 363 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Exceptions.h -rw-r--r-- root/root 6143 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/GrinPointer.h -rw-r--r-- root/root 15223 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ions.h -rw-r--r-- root/root 16871 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Ligands.h -rw-r--r-- root/root 780 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Linkage.h -rw-r--r-- root/root 11934 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MassCenterMotionRemover.h -rw-r--r-- root/root 9510 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/MolecularMechanicsSystem.h -rw-r--r-- root/root 13907 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NA.h -rw-r--r-- root/root 3377 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/NoseHooverThermostat.h -rw-r--r-- root/root 4459 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PDBReader.h -rw-r--r-- root/root 19573 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Pdb.h -rw-r--r-- root/root 4301 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicPdbWriter.h -rw-r--r-- root/root 3549 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/PeriodicVmdReporter.h -rw-r--r-- root/root 51009 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Protein.h -rw-r--r-- root/root 38117 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RNA.h -rw-r--r-- root/root 5122 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/RiboseMobilizer.h -rw-r--r-- root/root 8762 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Superpose.h -rw-r--r-- root/root 13560 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanDerWaalsForce.h -rw-r--r-- root/root 477 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VanderWallSphere.h -rw-r--r-- root/root 11619 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VelocityRescalingThermostat.h -rw-r--r-- root/root 935 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VmdConnection.h -rw-r--r-- root/root 4845 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/VoxelHash.h -rw-r--r-- root/root 2851 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/Water.h -rw-r--r-- root/root 3664 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/bondGeometry.h -rw-r--r-- root/root 4253 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/common.h -rw-r--r-- root/root 3429 2022-11-29 09:21 ./usr/include/molmodel/molmodel/internal/units.h drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/molmodel/ -rw-r--r-- root/root 3055 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelConfig.cmake -rw-r--r-- root/root 2759 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelConfigVersion.cmake -rw-r--r-- root/root 1602 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelTargets-none.cmake -rw-r--r-- root/root 4575 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/cmake/molmodel/MolmodelTargets.cmake lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/libSimTKmolmodel.so -> libSimTKmolmodel.so.3.1 drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/pkgconfig/ -rw-r--r-- root/root 246 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/pkgconfig/molmodel.pc drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-dev/ -rw-r--r-- root/root 911 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-dev/changelog.Debian.gz -rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-dev/copyright drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-dev/doc/ -rw-r--r-- root/root 241 2022-11-29 09:21 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelAPI.html -rw-r--r-- root/root 1787506 2022-11-29 09:21 ./usr/share/doc/libsimtkmolmodel-dev/doc/MolmodelUsersGuide.pdf.gz libsimtkmolmodel-plugins-dbgsym_3.1.0-4.1_i386.deb -------------------------------------------------- new Debian package, version 2.0. size 573124 bytes: control archive=544 bytes. 407 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: libsimtkmolmodel-plugins-dbgsym Source: molmodel Version: 3.1.0-4.1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debichem Team Installed-Size: 582 Depends: libsimtkmolmodel-plugins (= 3.1.0-4.1) Section: debug Priority: optional Description: debug symbols for libsimtkmolmodel-plugins Build-Ids: a208ad4c916e102b64c9e447cd2fe3b474d60b66 drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/a2/ -rw-r--r-- root/root 585584 2024-02-28 20:17 ./usr/lib/debug/.build-id/a2/08ad4c916e102b64c9e447cd2fe3b474d60b66.debug drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins-dbgsym -> libsimtkmolmodel-plugins libsimtkmolmodel-plugins_3.1.0-4.1_i386.deb ------------------------------------------- new Debian package, version 2.0. size 19776 bytes: control archive=1084 bytes. 1248 bytes, 24 lines control 269 bytes, 3 lines md5sums Package: libsimtkmolmodel-plugins Source: molmodel Version: 3.1.0-4.1 Architecture: i386 Maintainer: Debichem Team Installed-Size: 59 Depends: libc6 (>= 2.4), libgcc-s1 (>= 3.0), libopenmm8.1 (>= 8.1.2+dfsg), libsimbody3.7 (>= 3.7+dfsg), libsimtkmolmodel3.1t64 (>= 3.1.0), libstdc++6 (>= 13.1) Section: libs Priority: optional Homepage: https://simtk.org/projects/molmodel Description: Plugins for C++ API for creating molecular models for SimTK Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. . This package provides Molmodel plugins. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/molmodel/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/molmodel/plugins/ -rw-r--r-- root/root 46756 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/molmodel/plugins/libOpenMMPlugin.so drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins/ -rw-r--r-- root/root 911 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel-plugins/changelog.Debian.gz -rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel-plugins/copyright libsimtkmolmodel3.1t64-dbgsym_3.1.0-4.1_i386.deb ------------------------------------------------ new Debian package, version 2.0. size 13260372 bytes: control archive=556 bytes. 420 bytes, 13 lines control 106 bytes, 1 lines md5sums Package: libsimtkmolmodel3.1t64-dbgsym Source: molmodel Version: 3.1.0-4.1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debichem Team Installed-Size: 13435 Depends: libsimtkmolmodel3.1t64 (= 3.1.0-4.1) Section: debug Priority: optional Multi-Arch: same Description: debug symbols for libsimtkmolmodel3.1t64 Build-Ids: 0abc543d04e76b0daef48fa8f312c23d11450bc5 drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/debug/.build-id/0a/ -rw-r--r-- root/root 13747044 2024-02-28 20:17 ./usr/lib/debug/.build-id/0a/bc543d04e76b0daef48fa8f312c23d11450bc5.debug drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ lrwxrwxrwx root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64-dbgsym -> libsimtkmolmodel3.1t64 libsimtkmolmodel3.1t64_3.1.0-4.1_i386.deb ----------------------------------------- new Debian package, version 2.0. size 705100 bytes: control archive=1220 bytes. 1260 bytes, 26 lines control 338 bytes, 4 lines md5sums 55 bytes, 1 lines shlibs 68 bytes, 2 lines triggers Package: libsimtkmolmodel3.1t64 Source: molmodel Version: 3.1.0-4.1 Architecture: i386 Maintainer: Debichem Team Installed-Size: 2444 Depends: libc6 (>= 2.38), libgcc-s1 (>= 4.2), libsimbody3.7 (>= 3.7+dfsg), libstdc++6 (>= 14) Breaks: libsimtkmolmodel3.1 (<< 3.1.0-4.1) Replaces: libsimtkmolmodel3.1 Provides: libsimtkmolmodel3.1 (= 3.1.0-4.1) Section: libs Priority: optional Multi-Arch: same Homepage: https://simtk.org/projects/molmodel Description: C++ API for creating molecular models for SimTK Provides C++ API for creating molecular models whose dynamics can be simulated using the SimTK Simbody library. Molmodel is a programmer's toolkit for building reduced-coordinate, yet still all-atom, models of large biopolymers such as proteins, RNA, and DNA. One can control the allowed mobility. By default, Molmodel builds torsion-coordinate models in which bond stretch and bend angles are rigid while bond torsion angles are mobile. But one is able to rigidify or free any subsets of the atoms, such as the rigid benzene ring. . Molmodel is a C++ API for biochemist-friendly molecular modeling that extends the Simbody API to simplify construction of high-performance articulated models of molecules. drwxr-xr-x root/root 0 2024-02-28 20:17 ./ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/ -rw-r--r-- root/root 2486016 2024-02-28 20:17 ./usr/lib/i386-linux-gnu/libSimTKmolmodel.so.3.1 drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64/ -rw-r--r-- root/root 911 2024-02-28 20:17 ./usr/share/doc/libsimtkmolmodel3.1t64/changelog.Debian.gz -rw-r--r-- root/root 1452 2023-07-20 08:50 ./usr/share/doc/libsimtkmolmodel3.1t64/copyright drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/lintian/ drwxr-xr-x root/root 0 2024-02-28 20:17 ./usr/share/lintian/overrides/ -rw-r--r-- root/root 78 2024-02-28 20:17 ./usr/share/lintian/overrides/libsimtkmolmodel3.1t64 lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: warning: root directory /<>/sbuild-build-depends-lintian-dummy has unusual owner or group 998:999 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1430 B] Get:5 copy:/<>/apt_archive ./ Packages [1507 B] Fetched 3552 B in 0s (121 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common shared-mime-info t1utils ucf unzip Suggested packages: apt-config-icons isoquery libxml-parser-perl rng-tools low-memory-monitor libdata-dump-perl libcrypt-ssleay-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libmime-base32-perl libregexp-ipv6-perl libauthen-ntlm-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg libcgi-fast-perl libglib2.0-data xdg-user-dirs libgpg-error-l10n libhtml-format-perl libio-compress-brotli-perl liblist-someutils-xs-perl libfreezethaw-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl libxstring-perl libdata-dump-perl libhttp-daemon-perl libmailtools-perl libxml-sax-expat-perl The following NEW packages will be installed: appstream ca-certificates diffstat gpg gpgconf iso-codes libaliased-perl libappstream5 libapt-pkg-perl libassuan9 libb-hooks-endofscope-perl libb-hooks-op-check-perl libberkeleydb-perl libcapture-tiny-perl libcgi-pm-perl libclass-data-inheritable-perl libclass-inspector-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libcurl3t64-gnutls libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libencode-locale-perl libexception-class-perl libfile-basedir-perl libfile-find-rule-perl libfile-listing-perl libfile-sharedir-perl libfont-ttf-perl libgcrypt20 libglib2.0-0t64 libgpg-error0 libhtml-form-perl libhtml-html5-entities-perl libhtml-parser-perl libhtml-tagset-perl libhtml-tokeparser-simple-perl libhtml-tree-perl libhttp-cookies-perl libhttp-date-perl libhttp-message-perl libhttp-negotiate-perl libimport-into-perl libio-html-perl libio-interactive-perl libio-socket-ssl-perl libio-string-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-someutils-perl liblist-utilsby-perl liblwp-mediatypes-perl liblwp-protocol-https-perl liblz1 liblzo2-2 libmarkdown2 libmldbm-perl libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-http-perl libnet-ipv6addr-perl libnet-netmask-perl libnet-ssleay-perl libnetaddr-ip-perl libngtcp2-16 libngtcp2-crypto-gnutls8 libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8t64 libregexp-wildcards-perl librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libstemmer0d libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-charwidth-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-wrapi18n-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libwww-mechanize-perl libwww-perl libwww-robotrules-perl libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxmlb2 libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzop netbase openssl patchutils perl-openssl-defaults plzip readline-common sbuild-build-depends-lintian-dummy:i386 shared-mime-info t1utils ucf unzip 0 upgraded, 149 newly installed, 0 to remove and 0 not upgraded. Need to get 16.9 MB of archives. After this operation, 74.3 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B] Get:2 http://mirror.einval.org/debian unstable/main arm64 netbase all 6.5 [12.4 kB] Get:3 http://mirror.einval.org/debian unstable/main arm64 readline-common all 8.2-6 [69.4 kB] Get:4 http://mirror.einval.org/debian unstable/main arm64 openssl arm64 3.4.1-1 [1390 kB] Get:5 http://mirror.einval.org/debian unstable/main arm64 ca-certificates all 20241223 [164 kB] Get:6 http://mirror.einval.org/debian unstable/main arm64 libtext-charwidth-perl arm64 0.04-11+b4 [9652 B] Get:7 http://mirror.einval.org/debian unstable/main arm64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:8 http://mirror.einval.org/debian unstable/main arm64 ucf all 3.0051 [42.8 kB] Get:9 http://mirror.einval.org/debian unstable/main arm64 libglib2.0-0t64 arm64 2.84.1-1 [1423 kB] Get:10 http://mirror.einval.org/debian unstable/main arm64 shared-mime-info arm64 2.4-5+b2 [756 kB] Get:11 http://mirror.einval.org/debian unstable/main arm64 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arm64 libhtml-tagset-perl all 3.24-1 [14.7 kB] Get:42 http://mirror.einval.org/debian unstable/main arm64 liburi-perl all 5.30-1 [105 kB] Get:43 http://mirror.einval.org/debian unstable/main arm64 libhtml-parser-perl arm64 3.83-1+b2 [97.5 kB] Get:44 http://mirror.einval.org/debian unstable/main arm64 libcgi-pm-perl all 4.67-1 [217 kB] Get:45 http://mirror.einval.org/debian unstable/main arm64 libclass-data-inheritable-perl all 0.10-1 [8632 B] Get:46 http://mirror.einval.org/debian unstable/main arm64 libclass-inspector-perl all 1.36-3 [17.5 kB] Get:47 http://mirror.einval.org/debian unstable/main arm64 libclass-method-modifiers-perl all 2.15-1 [18.0 kB] Get:48 http://mirror.einval.org/debian unstable/main arm64 libclass-xsaccessor-perl arm64 1.19-4+b5 [34.9 kB] Get:49 http://mirror.einval.org/debian unstable/main arm64 libclone-perl arm64 0.47-1+b1 [13.7 kB] Get:50 http://mirror.einval.org/debian unstable/main arm64 libconfig-tiny-perl all 2.30-1 [18.9 kB] Get:51 http://mirror.einval.org/debian unstable/main arm64 libparams-util-perl arm64 1.102-3+b1 [23.7 kB] Get:52 http://mirror.einval.org/debian unstable/main arm64 libsub-install-perl all 0.929-1 [10.5 kB] Get:53 http://mirror.einval.org/debian unstable/main arm64 libdata-optlist-perl all 0.114-1 [10.6 kB] Get:54 http://mirror.einval.org/debian unstable/main arm64 libsub-exporter-perl all 0.990-1 [50.6 kB] Get:55 http://mirror.einval.org/debian unstable/main arm64 libconst-fast-perl all 0.014-2 [8792 B] Get:56 http://mirror.einval.org/debian unstable/main arm64 libcpanel-json-xs-perl arm64 4.39-1 [128 kB] Get:57 http://mirror.einval.org/debian unstable/main arm64 libdevel-stacktrace-perl all 2.0500-1 [26.4 kB] Get:58 http://mirror.einval.org/debian unstable/main arm64 libexception-class-perl all 1.45-1 [34.6 kB] Get:59 http://mirror.einval.org/debian unstable/main arm64 libiterator-perl all 0.03+ds1-2 [18.8 kB] Get:60 http://mirror.einval.org/debian unstable/main arm64 libiterator-util-perl all 0.02+ds1-2 [14.0 kB] Get:61 http://mirror.einval.org/debian unstable/main arm64 libdata-dpath-perl all 0.60-1 [41.8 kB] Get:62 http://mirror.einval.org/debian unstable/main arm64 libdata-messagepack-perl arm64 1.02-1+b4 [31.2 kB] Get:63 http://mirror.einval.org/debian unstable/main arm64 libnet-domain-tld-perl all 1.75-4 [31.5 kB] Get:64 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-domain-perl all 0.15-1 [11.9 kB] Get:65 http://mirror.einval.org/debian unstable/main arm64 libnet-ipv6addr-perl all 1.02-1 [21.7 kB] Get:66 http://mirror.einval.org/debian unstable/main arm64 libnet-netmask-perl all 2.0002-2 [28.6 kB] Get:67 http://mirror.einval.org/debian unstable/main arm64 libnetaddr-ip-perl arm64 4.079+dfsg-2+b5 [97.7 kB] Get:68 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-ip-perl all 0.31-1 [20.6 kB] Get:69 http://mirror.einval.org/debian unstable/main arm64 libdata-validate-uri-perl all 0.07-3 [11.0 kB] Get:70 http://mirror.einval.org/debian unstable/main arm64 libdevel-size-perl arm64 0.84-1+b1 [24.1 kB] Get:71 http://mirror.einval.org/debian unstable/main arm64 libemail-address-xs-perl arm64 1.05-1+b4 [28.2 kB] Get:72 http://mirror.einval.org/debian unstable/main arm64 libencode-locale-perl all 1.05-3 [12.9 kB] Get:73 http://mirror.einval.org/debian unstable/main arm64 libipc-system-simple-perl all 1.30-2 [26.8 kB] Get:74 http://mirror.einval.org/debian unstable/main arm64 libfile-basedir-perl all 0.09-2 [15.1 kB] Get:75 http://mirror.einval.org/debian unstable/main arm64 libnumber-compare-perl all 0.03-3 [6332 B] Get:76 http://mirror.einval.org/debian unstable/main arm64 libtext-glob-perl all 0.11-3 [7676 B] Get:77 http://mirror.einval.org/debian unstable/main arm64 libfile-find-rule-perl all 0.34-3 [26.6 kB] Get:78 http://mirror.einval.org/debian unstable/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:79 http://mirror.einval.org/debian unstable/main arm64 libhttp-date-perl all 6.06-1 [10.7 kB] Get:80 http://mirror.einval.org/debian unstable/main arm64 libfile-listing-perl all 6.16-1 [12.4 kB] Get:81 http://mirror.einval.org/debian unstable/main arm64 libfile-sharedir-perl all 1.118-3 [16.0 kB] Get:82 http://mirror.einval.org/debian unstable/main arm64 libio-string-perl all 1.08-4 [12.1 kB] Get:83 http://mirror.einval.org/debian unstable/main arm64 libfont-ttf-perl all 1.06-2 [318 kB] Get:84 http://mirror.einval.org/debian unstable/main arm64 libio-html-perl all 1.004-3 [16.2 kB] Get:85 http://mirror.einval.org/debian unstable/main arm64 liblwp-mediatypes-perl all 6.04-2 [20.2 kB] Get:86 http://mirror.einval.org/debian unstable/main arm64 libhttp-message-perl all 7.00-2 [79.8 kB] Get:87 http://mirror.einval.org/debian unstable/main arm64 libhtml-form-perl all 6.12-1 [32.3 kB] Get:88 http://mirror.einval.org/debian unstable/main arm64 libhtml-html5-entities-perl all 0.004-3 [21.0 kB] Get:89 http://mirror.einval.org/debian unstable/main arm64 libhtml-tree-perl all 5.07-3 [211 kB] Get:90 http://mirror.einval.org/debian unstable/main arm64 libhttp-cookies-perl all 6.11-1 [19.1 kB] Get:91 http://mirror.einval.org/debian unstable/main arm64 libhttp-negotiate-perl all 6.01-2 [13.1 kB] Get:92 http://mirror.einval.org/debian unstable/main arm64 perl-openssl-defaults arm64 7+b2 [6712 B] Get:93 http://mirror.einval.org/debian unstable/main arm64 libnet-ssleay-perl arm64 1.94-3 [323 kB] Get:94 http://mirror.einval.org/debian unstable/main arm64 libio-socket-ssl-perl all 2.089-1 [223 kB] Get:95 http://mirror.einval.org/debian unstable/main arm64 libnet-http-perl all 6.23-1 [23.9 kB] Get:96 http://mirror.einval.org/debian unstable/main arm64 liblwp-protocol-https-perl all 6.14-1 [10.8 kB] Get:97 http://mirror.einval.org/debian unstable/main arm64 libwww-robotrules-perl all 6.02-1 [12.9 kB] Get:98 http://mirror.einval.org/debian unstable/main arm64 libwww-perl all 6.78-1 [183 kB] Get:99 http://mirror.einval.org/debian unstable/main arm64 libhtml-tokeparser-simple-perl all 3.16-4 [39.1 kB] Get:100 http://mirror.einval.org/debian unstable/main arm64 libimport-into-perl all 1.002005-2 [11.3 kB] Get:101 http://mirror.einval.org/debian unstable/main arm64 libio-interactive-perl all 1.026-1 [11.7 kB] Get:102 http://mirror.einval.org/debian unstable/main arm64 libipc-run3-perl all 0.049-1 [31.5 kB] Get:103 http://mirror.einval.org/debian unstable/main arm64 libjson-maybexs-perl all 1.004008-1 [12.9 kB] Get:104 http://mirror.einval.org/debian unstable/main arm64 liblist-compare-perl all 0.55-2 [65.7 kB] Get:105 http://mirror.einval.org/debian unstable/main arm64 liblist-someutils-perl all 0.59-1 [37.1 kB] Get:106 http://mirror.einval.org/debian unstable/main arm64 liblist-utilsby-perl all 0.12-2 [15.5 kB] Get:107 http://mirror.einval.org/debian unstable/main arm64 liblz1 arm64 1.15-3 [37.8 kB] Get:108 http://mirror.einval.org/debian unstable/main arm64 liblzo2-2 arm64 2.10-3+b1 [49.6 kB] Get:109 http://mirror.einval.org/debian unstable/main arm64 libmarkdown2 arm64 2.2.7-2.1 [33.1 kB] Get:110 http://mirror.einval.org/debian unstable/main arm64 libmldbm-perl all 2.05-4 [16.8 kB] Get:111 http://mirror.einval.org/debian unstable/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:112 http://mirror.einval.org/debian unstable/main arm64 libsub-quote-perl all 2.006008-1 [21.8 kB] Get:113 http://mirror.einval.org/debian unstable/main arm64 libmoo-perl all 2.005005-1 [58.0 kB] Get:114 http://mirror.einval.org/debian unstable/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:115 http://mirror.einval.org/debian unstable/main arm64 libmoox-aliases-perl all 0.001006-2 [7156 B] Get:116 http://mirror.einval.org/debian unstable/main arm64 libmouse-perl arm64 2.5.11-1+b1 [141 kB] Get:117 http://mirror.einval.org/debian unstable/main arm64 libpackage-stash-perl all 0.40-1 [22.0 kB] Get:118 http://mirror.einval.org/debian unstable/main arm64 libsub-identify-perl arm64 0.14-3+b3 [11.2 kB] Get:119 http://mirror.einval.org/debian unstable/main arm64 libsub-name-perl arm64 0.28-1 [12.1 kB] Get:120 http://mirror.einval.org/debian unstable/main arm64 libnamespace-clean-perl all 0.27-2 [17.8 kB] Get:121 http://mirror.einval.org/debian unstable/main arm64 libpath-tiny-perl all 0.148-1 [56.7 kB] Get:122 http://mirror.einval.org/debian unstable/main arm64 libperlio-gzip-perl arm64 0.20-1+b4 [17.4 kB] Get:123 http://mirror.einval.org/debian unstable/main arm64 libperlio-utf8-strict-perl arm64 0.010-1+b3 [11.4 kB] Get:124 http://mirror.einval.org/debian unstable/main arm64 libproc-processtable-perl arm64 0.636-1+b3 [41.7 kB] Get:125 http://mirror.einval.org/debian unstable/main arm64 libregexp-wildcards-perl all 1.05-3 [14.1 kB] Get:126 http://mirror.einval.org/debian unstable/main arm64 libsereal-decoder-perl arm64 5.004+ds-1+b3 [96.7 kB] Get:127 http://mirror.einval.org/debian unstable/main arm64 libsereal-encoder-perl arm64 5.004+ds-1+b3 [99.0 kB] Get:128 http://mirror.einval.org/debian unstable/main arm64 libsort-versions-perl all 1.62-3 [8928 B] Get:129 http://mirror.einval.org/debian unstable/main arm64 libxs-parse-keyword-perl arm64 0.48-2 [64.3 kB] Get:130 http://mirror.einval.org/debian unstable/main arm64 libsyntax-keyword-try-perl arm64 0.30-1+b1 [27.1 kB] Get:131 http://mirror.einval.org/debian unstable/main arm64 libterm-readkey-perl arm64 2.38-2+b4 [24.5 kB] Get:132 http://mirror.einval.org/debian unstable/main arm64 libtext-levenshteinxs-perl arm64 0.03-5+b4 [8772 B] Get:133 http://mirror.einval.org/debian unstable/main arm64 libtext-markdown-discount-perl arm64 0.18-1 [13.2 kB] Get:134 http://mirror.einval.org/debian unstable/main arm64 libtext-xslate-perl arm64 3.5.9-2+b1 [172 kB] Get:135 http://mirror.einval.org/debian unstable/main arm64 libtime-duration-perl all 1.21-2 [13.1 kB] Get:136 http://mirror.einval.org/debian unstable/main arm64 libtime-moment-perl arm64 0.44-2+b4 [72.0 kB] Get:137 http://mirror.einval.org/debian unstable/main arm64 libunicode-utf8-perl arm64 0.62-2+b3 [20.1 kB] Get:138 http://mirror.einval.org/debian unstable/main arm64 libwww-mechanize-perl all 2.19-1 [114 kB] Get:139 http://mirror.einval.org/debian unstable/main arm64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:140 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:141 http://mirror.einval.org/debian unstable/main arm64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:142 http://mirror.einval.org/debian unstable/main arm64 libxml-libxml-perl arm64 2.0207+dfsg+really+2.0134-5+b1 [300 kB] Get:143 http://mirror.einval.org/debian unstable/main arm64 libyaml-libyaml-perl arm64 0.903.0+ds-1 [33.7 kB] Get:144 http://mirror.einval.org/debian unstable/main arm64 plzip arm64 1.12-3 [60.0 kB] Get:145 http://mirror.einval.org/debian unstable/main arm64 lzop arm64 1.04-2+b1 [82.3 kB] Get:146 http://mirror.einval.org/debian unstable/main arm64 patchutils arm64 0.4.2-1+b1 [71.3 kB] Get:147 http://mirror.einval.org/debian unstable/main arm64 t1utils arm64 1.41-4+b1 [57.6 kB] Get:148 http://mirror.einval.org/debian unstable/main arm64 unzip arm64 6.0-29 [163 kB] Get:149 http://mirror.einval.org/debian unstable/main arm64 lintian all 2.122.0 [1063 kB] Preconfiguring packages ... Fetched 16.9 MB in 0s (57.1 MB/s) Selecting previously unselected package netbase. (Reading database ... 24944 files and directories currently installed.) Preparing to unpack .../000-netbase_6.5_all.deb ... Unpacking netbase (6.5) ... Selecting previously unselected package readline-common. Preparing to unpack .../001-readline-common_8.2-6_all.deb ... Unpacking readline-common (8.2-6) ... Selecting previously unselected package openssl. Preparing to unpack .../002-openssl_3.4.1-1_arm64.deb ... Unpacking openssl (3.4.1-1) ... Selecting previously unselected package ca-certificates. Preparing to unpack .../003-ca-certificates_20241223_all.deb ... Unpacking ca-certificates (20241223) ... Selecting previously unselected package libtext-charwidth-perl:arm64. Preparing to unpack .../004-libtext-charwidth-perl_0.04-11+b4_arm64.deb ... Unpacking libtext-charwidth-perl:arm64 (0.04-11+b4) ... Selecting previously unselected package libtext-wrapi18n-perl. 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Selecting previously unselected package libcurl3t64-gnutls:arm64. Preparing to unpack .../011-libcurl3t64-gnutls_8.13.0-1_arm64.deb ... Unpacking libcurl3t64-gnutls:arm64 (8.13.0-1) ... Selecting previously unselected package libstemmer0d:arm64. Preparing to unpack .../012-libstemmer0d_2.2.0-4+b2_arm64.deb ... Unpacking libstemmer0d:arm64 (2.2.0-4+b2) ... Selecting previously unselected package libxmlb2:arm64. Preparing to unpack .../013-libxmlb2_0.3.22-1_arm64.deb ... Unpacking libxmlb2:arm64 (0.3.22-1) ... Selecting previously unselected package libyaml-0-2:arm64. Preparing to unpack .../014-libyaml-0-2_0.2.5-2_arm64.deb ... Unpacking libyaml-0-2:arm64 (0.2.5-2) ... Selecting previously unselected package libappstream5:arm64. Preparing to unpack .../015-libappstream5_1.0.4-1_arm64.deb ... Unpacking libappstream5:arm64 (1.0.4-1) ... Selecting previously unselected package appstream. Preparing to unpack .../016-appstream_1.0.4-1_arm64.deb ... Unpacking appstream (1.0.4-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../017-diffstat_1.67-1_arm64.deb ... Unpacking diffstat (1.67-1) ... Selecting previously unselected package libgpg-error0:arm64. Preparing to unpack .../018-libgpg-error0_1.51-4_arm64.deb ... Unpacking libgpg-error0:arm64 (1.51-4) ... Selecting previously unselected package libassuan9:arm64. Preparing to unpack .../019-libassuan9_3.0.2-2_arm64.deb ... Unpacking libassuan9:arm64 (3.0.2-2) ... Selecting previously unselected package libgcrypt20:arm64. Preparing to unpack .../020-libgcrypt20_1.11.0-7_arm64.deb ... Unpacking libgcrypt20:arm64 (1.11.0-7) ... Selecting previously unselected package libreadline8t64:arm64. Preparing to unpack .../021-libreadline8t64_8.2-6_arm64.deb ... Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8 to /lib/aarch64-linux-gnu/libhistory.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libhistory.so.8.2 to /lib/aarch64-linux-gnu/libhistory.so.8.2.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8 to /lib/aarch64-linux-gnu/libreadline.so.8.usr-is-merged by libreadline8t64' Adding 'diversion of /lib/aarch64-linux-gnu/libreadline.so.8.2 to /lib/aarch64-linux-gnu/libreadline.so.8.2.usr-is-merged by libreadline8t64' Unpacking libreadline8t64:arm64 (8.2-6) ... Selecting previously unselected package gpgconf. Preparing to unpack .../022-gpgconf_2.2.46-6_arm64.deb ... Unpacking gpgconf (2.2.46-6) ... Selecting previously unselected package gpg. Preparing to unpack .../023-gpg_2.2.46-6_arm64.deb ... Unpacking gpg (2.2.46-6) ... Selecting previously unselected package iso-codes. Preparing to unpack .../024-iso-codes_4.17.0-1_all.deb ... Unpacking iso-codes (4.17.0-1) ... Selecting previously unselected package libaliased-perl. Preparing to unpack .../025-libaliased-perl_0.34-3_all.deb ... Unpacking libaliased-perl (0.34-3) ... Selecting previously unselected package libapt-pkg-perl. Preparing to unpack .../026-libapt-pkg-perl_0.1.41_arm64.deb ... Unpacking libapt-pkg-perl (0.1.41) ... Selecting previously unselected package libb-hooks-op-check-perl:arm64. Preparing to unpack .../027-libb-hooks-op-check-perl_0.22-3+b2_arm64.deb ... Unpacking libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Selecting previously unselected package libdynaloader-functions-perl. Preparing to unpack .../028-libdynaloader-functions-perl_0.004-1_all.deb ... Unpacking libdynaloader-functions-perl (0.004-1) ... Selecting previously unselected package libdevel-callchecker-perl:arm64. Preparing to unpack .../029-libdevel-callchecker-perl_0.009-1+b1_arm64.deb ... Unpacking libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Selecting previously unselected package libparams-classify-perl:arm64. Preparing to unpack .../030-libparams-classify-perl_0.015-2+b4_arm64.deb ... Unpacking libparams-classify-perl:arm64 (0.015-2+b4) ... Selecting previously unselected package libmodule-runtime-perl. Preparing to unpack .../031-libmodule-runtime-perl_0.016-2_all.deb ... Unpacking libmodule-runtime-perl (0.016-2) ... Selecting previously unselected package libtry-tiny-perl. Preparing to unpack .../032-libtry-tiny-perl_0.32-1_all.deb ... Unpacking libtry-tiny-perl (0.32-1) ... Selecting previously unselected package libmodule-implementation-perl. Preparing to unpack .../033-libmodule-implementation-perl_0.09-2_all.deb ... Unpacking libmodule-implementation-perl (0.09-2) ... Selecting previously unselected package libsub-exporter-progressive-perl. Preparing to unpack .../034-libsub-exporter-progressive-perl_0.001013-3_all.deb ... Unpacking libsub-exporter-progressive-perl (0.001013-3) ... Selecting previously unselected package libvariable-magic-perl. Preparing to unpack .../035-libvariable-magic-perl_0.64-1+b1_arm64.deb ... Unpacking libvariable-magic-perl (0.64-1+b1) ... Selecting previously unselected package libb-hooks-endofscope-perl. Preparing to unpack .../036-libb-hooks-endofscope-perl_0.28-1_all.deb ... Unpacking libb-hooks-endofscope-perl (0.28-1) ... Selecting previously unselected package libberkeleydb-perl:arm64. Preparing to unpack .../037-libberkeleydb-perl_0.66-1_arm64.deb ... Unpacking libberkeleydb-perl:arm64 (0.66-1) ... Selecting previously unselected package libcapture-tiny-perl. Preparing to unpack .../038-libcapture-tiny-perl_0.50-1_all.deb ... Unpacking libcapture-tiny-perl (0.50-1) ... Selecting previously unselected package libhtml-tagset-perl. Preparing to unpack .../039-libhtml-tagset-perl_3.24-1_all.deb ... Unpacking libhtml-tagset-perl (3.24-1) ... Selecting previously unselected package liburi-perl. Preparing to unpack .../040-liburi-perl_5.30-1_all.deb ... Unpacking liburi-perl (5.30-1) ... Selecting previously unselected package libhtml-parser-perl:arm64. Preparing to unpack .../041-libhtml-parser-perl_3.83-1+b2_arm64.deb ... Unpacking libhtml-parser-perl:arm64 (3.83-1+b2) ... Selecting previously unselected package libcgi-pm-perl. Preparing to unpack .../042-libcgi-pm-perl_4.67-1_all.deb ... Unpacking libcgi-pm-perl (4.67-1) ... Selecting previously unselected package libclass-data-inheritable-perl. Preparing to unpack .../043-libclass-data-inheritable-perl_0.10-1_all.deb ... Unpacking libclass-data-inheritable-perl (0.10-1) ... Selecting previously unselected package libclass-inspector-perl. Preparing to unpack .../044-libclass-inspector-perl_1.36-3_all.deb ... Unpacking libclass-inspector-perl (1.36-3) ... Selecting previously unselected package libclass-method-modifiers-perl. Preparing to unpack .../045-libclass-method-modifiers-perl_2.15-1_all.deb ... Unpacking libclass-method-modifiers-perl (2.15-1) ... Selecting previously unselected package libclass-xsaccessor-perl. Preparing to unpack .../046-libclass-xsaccessor-perl_1.19-4+b5_arm64.deb ... Unpacking libclass-xsaccessor-perl (1.19-4+b5) ... Selecting previously unselected package libclone-perl:arm64. Preparing to unpack .../047-libclone-perl_0.47-1+b1_arm64.deb ... Unpacking libclone-perl:arm64 (0.47-1+b1) ... Selecting previously unselected package libconfig-tiny-perl. Preparing to unpack .../048-libconfig-tiny-perl_2.30-1_all.deb ... Unpacking libconfig-tiny-perl (2.30-1) ... Selecting previously unselected package libparams-util-perl. Preparing to unpack .../049-libparams-util-perl_1.102-3+b1_arm64.deb ... Unpacking libparams-util-perl (1.102-3+b1) ... Selecting previously unselected package libsub-install-perl. Preparing to unpack .../050-libsub-install-perl_0.929-1_all.deb ... Unpacking libsub-install-perl (0.929-1) ... Selecting previously unselected package libdata-optlist-perl. Preparing to unpack .../051-libdata-optlist-perl_0.114-1_all.deb ... Unpacking libdata-optlist-perl (0.114-1) ... Selecting previously unselected package libsub-exporter-perl. Preparing to unpack .../052-libsub-exporter-perl_0.990-1_all.deb ... Unpacking libsub-exporter-perl (0.990-1) ... Selecting previously unselected package libconst-fast-perl. Preparing to unpack .../053-libconst-fast-perl_0.014-2_all.deb ... Unpacking libconst-fast-perl (0.014-2) ... Selecting previously unselected package libcpanel-json-xs-perl:arm64. Preparing to unpack .../054-libcpanel-json-xs-perl_4.39-1_arm64.deb ... Unpacking libcpanel-json-xs-perl:arm64 (4.39-1) ... Selecting previously unselected package libdevel-stacktrace-perl. Preparing to unpack .../055-libdevel-stacktrace-perl_2.0500-1_all.deb ... Unpacking libdevel-stacktrace-perl (2.0500-1) ... Selecting previously unselected package libexception-class-perl. 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Unpacking lzop (1.04-2+b1) ... Selecting previously unselected package patchutils. Preparing to unpack .../144-patchutils_0.4.2-1+b1_arm64.deb ... Unpacking patchutils (0.4.2-1+b1) ... Selecting previously unselected package t1utils. Preparing to unpack .../145-t1utils_1.41-4+b1_arm64.deb ... Unpacking t1utils (1.41-4+b1) ... Selecting previously unselected package unzip. Preparing to unpack .../146-unzip_6.0-29_arm64.deb ... Unpacking unzip (6.0-29) ... Selecting previously unselected package lintian. Preparing to unpack .../147-lintian_2.122.0_all.deb ... Unpacking lintian (2.122.0) ... Selecting previously unselected package sbuild-build-depends-lintian-dummy:i386. Preparing to unpack .../148-sbuild-build-depends-lintian-dummy_0.invalid.0_i386.deb ... Unpacking sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Setting up libapt-pkg-perl (0.1.41) ... Setting up liblz1:arm64 (1.15-3) ... Setting up libberkeleydb-perl:arm64 (0.66-1) ... Setting up plzip (1.12-3) ... update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.plzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up libtext-charwidth-perl:arm64 (0.04-11+b4) ... Setting up libunicode-utf8-perl (0.62-2+b3) ... Setting up libmouse-perl:arm64 (2.5.11-1+b1) ... Setting up libgpg-error0:arm64 (1.51-4) ... Setting up libdata-messagepack-perl (1.02-1+b4) ... Setting up libclass-inspector-perl (1.36-3) ... Setting up libdynaloader-functions-perl (0.004-1) ... Setting up libtext-glob-perl (0.11-3) ... Setting up libclass-method-modifiers-perl (2.15-1) ... Setting up liblist-compare-perl (0.55-2) ... Setting up libclone-perl:arm64 (0.47-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.5-2) ... Setting up libsub-identify-perl (0.14-3+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.39-1) ... Setting up libhtml-tagset-perl (3.24-1) ... Setting up libdevel-size-perl (0.84-1+b1) ... Setting up unzip (6.0-29) ... Setting up liblwp-mediatypes-perl (6.04-2) ... Setting up libyaml-libyaml-perl (0.903.0+ds-1) ... Setting up libio-interactive-perl (1.026-1) ... Setting up libtry-tiny-perl (0.32-1) ... Setting up perl-openssl-defaults:arm64 (7+b2) ... Setting up libmldbm-perl (2.05-4) ... Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up libgcrypt20:arm64 (1.11.0-7) ... Setting up liblzo2-2:arm64 (2.10-3+b1) ... Setting up libtime-moment-perl (0.44-2+b4) ... Setting up libencode-locale-perl (1.05-3) ... Setting up libconfig-tiny-perl (2.30-1) ... Setting up libsereal-encoder-perl (5.004+ds-1+b3) ... Setting up liblist-utilsby-perl (0.12-2) ... Setting up libtext-wrapi18n-perl (0.06-10) ... Setting up libnet-netmask-perl (2.0002-2) ... Setting up libsub-install-perl (0.929-1) ... Setting up libnumber-compare-perl (0.03-3) ... Setting up patchutils (0.4.2-1+b1) ... Setting up libjson-maybexs-perl (1.004008-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up libnetaddr-ip-perl (4.079+dfsg-2+b5) ... Setting up libglib2.0-0t64:arm64 (2.84.1-1) ... No schema files found: doing nothing. Setting up libclass-data-inheritable-perl (0.10-1) ... Setting up libfile-find-rule-perl (0.34-3) ... Setting up libipc-system-simple-perl (1.30-2) ... Setting up libnet-domain-tld-perl (1.75-4) ... Setting up libperlio-utf8-strict-perl (0.010-1+b3) ... Setting up t1utils (1.41-4+b1) ... Setting up shared-mime-info (2.4-5+b2) ... Setting up diffstat (1.67-1) ... Setting up libvariable-magic-perl (0.64-1+b1) ... Setting up libio-html-perl (1.004-3) ... Setting up libb-hooks-op-check-perl:arm64 (0.22-3+b2) ... Setting up ucf (3.0051) ... Setting up libparams-util-perl (1.102-3+b1) ... Setting up libtime-duration-perl (1.21-2) ... Setting up libtext-xslate-perl:arm64 (3.5.9-2+b1) ... Setting up libsub-exporter-progressive-perl (0.001013-3) ... Setting up libcapture-tiny-perl (0.50-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl:arm64 (0.28-1) ... Setting up libdata-validate-domain-perl (0.15-1) ... Setting up libproc-processtable-perl:arm64 (0.636-1+b3) ... Setting up libpath-tiny-perl (0.148-1) ... Setting up lzop (1.04-2+b1) ... Setting up libassuan9:arm64 (3.0.2-2) ... Setting up librole-tiny-perl (2.002004-1) ... Setting up libipc-run3-perl (0.049-1) ... Setting up libregexp-wildcards-perl (1.05-3) ... Setting up libfile-sharedir-perl (1.118-3) ... Setting up libaliased-perl (0.34-3) ... Setting up netbase (6.5) ... Setting up libngtcp2-16:arm64 (1.11.0-1) ... Setting up libstrictures-perl (2.000006-1) ... Setting up libsub-quote-perl (2.006008-1) ... Setting up libdevel-stacktrace-perl (2.0500-1) ... Setting up libclass-xsaccessor-perl (1.19-4+b5) ... Setting up libstemmer0d:arm64 (2.2.0-4+b2) ... Setting up libsort-versions-perl (1.62-3) ... Setting up libterm-readkey-perl (2.38-2+b4) ... Setting up libfont-ttf-perl (1.06-2) ... Setting up openssl (3.4.1-1) ... Setting up libtext-levenshteinxs-perl (0.03-5+b4) ... Setting up libperlio-gzip-perl (0.20-1+b4) ... Setting up readline-common (8.2-6) ... Setting up libhtml-html5-entities-perl (0.004-3) ... Setting up libsereal-decoder-perl (5.004+ds-1+b3) ... Setting up libmarkdown2:arm64 (2.2.7-2.1) ... Setting up liburi-perl (5.30-1) ... Setting up iso-codes (4.17.0-1) ... Setting up libnet-ipv6addr-perl (1.02-1) ... Setting up libngtcp2-crypto-gnutls8:arm64 (1.11.0-1) ... Setting up libdata-validate-ip-perl (0.31-1) ... Setting up libemail-address-xs-perl (1.05-1+b4) ... Setting up libnet-ssleay-perl:arm64 (1.94-3) ... Setting up libhttp-date-perl (6.06-1) ... Setting up libfile-basedir-perl (0.09-2) ... Setting up libfile-listing-perl (6.16-1) ... Setting up libxmlb2:arm64 (0.3.22-1) ... Setting up libcurl3t64-gnutls:arm64 (8.13.0-1) ... Setting up libnet-http-perl (6.23-1) ... Setting up libtext-markdown-discount-perl (0.18-1) ... Setting up libappstream5:arm64 (1.0.4-1) ... Setting up libexception-class-perl (1.45-1) ... Setting up libdevel-callchecker-perl:arm64 (0.009-1+b1) ... Setting up libxml-sax-perl (1.02+dfsg-4) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 152 added, 0 removed; done. Setting up libdata-validate-uri-perl (0.07-3) ... Setting up libxs-parse-keyword-perl (0.48-2) ... Setting up appstream (1.0.4-1) ... ✔ Metadata cache was updated successfully. Setting up libdata-optlist-perl (0.114-1) ... Setting up libreadline8t64:arm64 (8.2-6) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up libwww-robotrules-perl (6.02-1) ... Setting up libsyntax-keyword-try-perl (0.30-1+b1) ... Setting up libhtml-parser-perl:arm64 (3.83-1+b2) ... Setting up gpgconf (2.2.46-6) ... Setting up libio-socket-ssl-perl (2.089-1) ... Setting up gpg (2.2.46-6) ... Setting up libsub-exporter-perl (0.990-1) ... Setting up libhttp-message-perl (7.00-2) ... Setting up libhtml-form-perl (6.12-1) ... Setting up libiterator-perl (0.03+ds1-2) ... Setting up libhttp-negotiate-perl (6.01-2) ... Setting up libiterator-util-perl (0.02+ds1-2) ... Setting up libhttp-cookies-perl (6.11-1) ... Setting up libhtml-tree-perl (5.07-3) ... Setting up libparams-classify-perl:arm64 (0.015-2+b4) ... Setting up libcgi-pm-perl (4.67-1) ... Setting up libmodule-runtime-perl (0.016-2) ... Setting up libconst-fast-perl (0.014-2) ... Setting up libdata-dpath-perl (0.60-1) ... Setting up libmodule-implementation-perl (0.09-2) ... Setting up libpackage-stash-perl (0.40-1) ... Setting up libimport-into-perl (1.002005-2) ... Setting up libmoo-perl (2.005005-1) ... Setting up liblist-someutils-perl (0.59-1) ... Setting up libmoox-aliases-perl (0.001006-2) ... Setting up libb-hooks-endofscope-perl (0.28-1) ... Setting up libnamespace-clean-perl (0.27-2) ... Setting up liblwp-protocol-https-perl (6.14-1) ... Setting up libwww-perl (6.78-1) ... Setting up libhtml-tokeparser-simple-perl (3.16-4) ... Setting up libwww-mechanize-perl (2.19-1) ... Setting up lintian (2.122.0) ... Setting up sbuild-build-depends-lintian-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.41-6) ... Processing triggers for man-db (2.13.0-1) ... Not building database; man-db/auto-update is not 'true'. Processing triggers for ca-certificates (20241223) ... Updating certificates in /etc/ssl/certs... 0 added, 0 removed; done. Running hooks in /etc/ca-certificates/update.d... done. Running lintian... I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 1248 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 66 Job: molmodel_3.1.0-4.1 Lintian: pass Machine Architecture: arm64 Package: molmodel Package-Time: 1353 Source-Version: 3.1.0-4.1 Space: n/a Status: successful Version: 3.1.0-4.1 -------------------------------------------------------------------------------- Finished at 2025-04-08T15:19:06Z Build needed 00:22:33, no disk space