sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | mptp 0.2.4-3 (arm64) Thu, 11 Jan 2024 04:28:59 +0000 | +==============================================================================+ Package: mptp Version: 0.2.4-3 Source Version: 0.2.4-3 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-72fc3785-3e10-4887-9636-6a35094de11f' with '<>' I: NOTICE: Log filtering will replace 'build/mptp-wWDLdT/resolver-tJg51I' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian sid InRelease [198 kB] Get:2 http://localhost:3142/debian sid/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian sid/main amd64 Packages.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [24.0 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [65.8 kB] Get:4 http://localhost:3142/debian sid/main Sources T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [24.0 kB] Get:6 http://localhost:3142/debian sid/main arm64 Packages [9529 kB] Get:5 http://localhost:3142/debian sid/main amd64 Packages T-2024-01-11-0244.20-F-2024-01-11-0244.20.pdiff [65.8 kB] Fetched 9944 kB in 2s (4718 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mptp' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mptp.git Please use: git clone https://salsa.debian.org/med-team/mptp.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 106 kB of source archives. Get:1 http://localhost:3142/debian sid/main mptp 0.2.4-3 (dsc) [2008 B] Get:2 http://localhost:3142/debian sid/main mptp 0.2.4-3 (tar) [74.3 kB] Get:3 http://localhost:3142/debian sid/main mptp 0.2.4-3 (diff) [29.6 kB] Fetched 106 kB in 1s (134 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mptp-wWDLdT/mptp-0.2.4' with '<>' I: NOTICE: Log filtering will replace 'build/mptp-wWDLdT' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), bison, flex, libgsl-dev, pkg-config, bash-completion, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 Filtered Build-Depends: debhelper-compat (= 13), bison, flex, libgsl-dev, pkg-config, bash-completion, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [768 B] Get:5 copy:/<>/apt_archive ./ Packages [811 B] Fetched 2188 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf automake autopoint autotools-dev bash-completion binutils-aarch64-linux-gnu bison bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file flex g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl27:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libpkgconf3 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross m4 man-db pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc bison-doc gcc-13-locales cpp-13-doc cpp-doc dh-make binutils-multiarch flex-doc gcc-13-doc manpages-dev gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 gsl-ref-psdoc:arm64 | gsl-doc-pdf:arm64 | gsl-doc-info:arm64 | gsl-ref-html:arm64 krb5-doc:arm64 krb5-user:arm64 libstdc++-11-doc:arm64 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: libfl-dev curl | wget | lynx libidn2-0:arm64 libarchive-cpio-perl krb5-locales:arm64 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bash-completion binutils-aarch64-linux-gnu bison bsdextrautils cpp-13-aarch64-linux-gnu cpp-aarch64-linux-gnu cross-config crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file flex g++-13-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-11-base:arm64 gcc-13-aarch64-linux-gnu gcc-13-aarch64-linux-gnu-base gcc-13-base:arm64 gcc-13-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcom-err2:arm64 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:arm64 libgcc-13-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgomp1:arm64 libgomp1-arm64-cross libgsl-dev:arm64 libgsl27:arm64 libgslcblas0:arm64 libgssapi-krb5-2:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libicu72 libio-string-perl libitm1:arm64 libitm1-arm64-cross libk5crypto3:arm64 libkeyutils1:arm64 libkrb5-3:arm64 libkrb5support0:arm64 liblocale-gettext-perl liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1 libnsl-dev:arm64 libnsl2:arm64 libpipeline1 libpkgconf3 libssl3:arm64 libstdc++-11-dev:arm64 libstdc++-13-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsub-override-perl libtirpc-dev:arm64 libtirpc3:arm64 libtool libtsan0:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-arm64-cross m4 man-db pkg-config:arm64 pkgconf:arm64 pkgconf-bin po-debconf sbuild-build-depends-main-dummy:arm64 sensible-utils ucf 0 upgraded, 111 newly installed, 0 to remove and 0 not upgraded. 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Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B] Get:2 http://localhost:3142/debian sid/main amd64 m4 amd64 1.4.19-4 [287 kB] Get:3 http://localhost:3142/debian sid/main amd64 flex amd64 2.6.4-8.2+b2 [426 kB] Get:4 http://localhost:3142/debian sid/main amd64 liblocale-gettext-perl amd64 1.07-6+b1 [15.2 kB] Get:5 http://localhost:3142/debian sid/main amd64 sensible-utils all 0.0.20 [19.3 kB] Get:6 http://localhost:3142/debian sid/main amd64 bash-completion all 1:2.11-8 [224 kB] Get:7 http://localhost:3142/debian sid/main amd64 libmagic-mgc amd64 1:5.45-2+b1 [314 kB] Get:8 http://localhost:3142/debian sid/main amd64 libmagic1 amd64 1:5.45-2+b1 [105 kB] Get:9 http://localhost:3142/debian sid/main amd64 file amd64 1:5.45-2+b1 [43.1 kB] Get:10 http://localhost:3142/debian sid/main amd64 gettext-base amd64 0.21-14 [161 kB] Get:11 http://localhost:3142/debian sid/main amd64 libuchardet0 amd64 0.0.8-1 [68.5 kB] Get:12 http://localhost:3142/debian sid/main amd64 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gcc-13-aarch64-linux-gnu-base amd64 13.2.0-7cross2 [41.0 kB] Get:24 http://localhost:3142/debian sid/main amd64 cpp-13-aarch64-linux-gnu amd64 13.2.0-7cross2 [9771 kB] Get:25 http://localhost:3142/debian sid/main amd64 cpp-aarch64-linux-gnu amd64 4:13.2.0-2 [4164 B] Get:26 http://localhost:3142/debian sid/main amd64 cross-config all 2.6.20 [16.3 kB] Get:27 http://localhost:3142/debian sid/main amd64 gcc-13-cross-base all 13.2.0-7cross2 [36.6 kB] Get:28 http://localhost:3142/debian sid/main amd64 libc6-arm64-cross all 2.37-12cross1 [1006 kB] Get:29 http://localhost:3142/debian sid/main amd64 libgcc-s1-arm64-cross all 13.2.0-7cross2 [40.8 kB] Get:30 http://localhost:3142/debian sid/main amd64 libgomp1-arm64-cross all 13.2.0-7cross2 [112 kB] Get:31 http://localhost:3142/debian sid/main amd64 libitm1-arm64-cross all 13.2.0-7cross2 [23.3 kB] Get:32 http://localhost:3142/debian sid/main amd64 libatomic1-arm64-cross all 13.2.0-7cross2 [9892 B] Get:33 http://localhost:3142/debian sid/main 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all 13.11.9 [82.3 kB] Get:64 http://localhost:3142/debian sid/main amd64 libtool all 2.4.7-7 [517 kB] Get:65 http://localhost:3142/debian sid/main amd64 dh-autoreconf all 20 [17.1 kB] Get:66 http://localhost:3142/debian sid/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:67 http://localhost:3142/debian sid/main amd64 libsub-override-perl all 0.10-1 [10.6 kB] Get:68 http://localhost:3142/debian sid/main amd64 libfile-stripnondeterminism-perl all 1.13.1-1 [19.4 kB] Get:69 http://localhost:3142/debian sid/main amd64 dh-strip-nondeterminism all 1.13.1-1 [8620 B] Get:70 http://localhost:3142/debian sid/main amd64 libelf1 amd64 0.190-1+b1 [176 kB] Get:71 http://localhost:3142/debian sid/main amd64 dwz amd64 0.15-1 [109 kB] Get:72 http://localhost:3142/debian sid/main amd64 gettext amd64 0.21-14 [1300 kB] Get:73 http://localhost:3142/debian sid/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:74 http://localhost:3142/debian sid/main amd64 po-debconf all 1.0.21+nmu1 [248 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sid/main arm64 libk5crypto3 arm64 1.20.1-5 [79.9 kB] Get:87 http://localhost:3142/debian sid/main arm64 libkeyutils1 arm64 1.6.3-2+b2 [9296 B] Get:88 http://localhost:3142/debian sid/main arm64 libssl3 arm64 3.1.4-2 [1835 kB] Get:89 http://localhost:3142/debian sid/main arm64 libkrb5-3 arm64 1.20.1-5 [315 kB] Get:90 http://localhost:3142/debian sid/main arm64 libgssapi-krb5-2 arm64 1.20.1-5 [124 kB] Get:91 http://localhost:3142/debian sid/main arm64 libtirpc3 arm64 1.3.4+ds-1 [77.9 kB] Get:92 http://localhost:3142/debian sid/main arm64 libnsl2 arm64 1.3.0-3 [37.5 kB] Get:93 http://localhost:3142/debian sid/main arm64 libtirpc-dev arm64 1.3.4+ds-1 [192 kB] Get:94 http://localhost:3142/debian sid/main arm64 libnsl-dev arm64 1.3.0-3 [66.3 kB] Get:95 http://localhost:3142/debian sid/main arm64 libc6-dev arm64 2.37-13 [1433 kB] Get:96 http://localhost:3142/debian sid/main arm64 libgomp1 arm64 13.2.0-9 [118 kB] Get:97 http://localhost:3142/debian sid/main arm64 libitm1 arm64 13.2.0-9 [23.9 kB] Get:98 http://localhost:3142/debian sid/main arm64 liblsan0 arm64 13.2.0-9 [1069 kB] Get:99 http://localhost:3142/debian sid/main arm64 libtsan0 arm64 11.4.0-7 [1957 kB] Get:100 http://localhost:3142/debian sid/main arm64 libstdc++6 arm64 13.2.0-9 [622 kB] Get:101 http://localhost:3142/debian sid/main arm64 libubsan1 arm64 13.2.0-9 [981 kB] Get:102 http://localhost:3142/debian sid/main arm64 libhwasan0 arm64 13.2.0-9 [1120 kB] Get:103 http://localhost:3142/debian sid/main arm64 libgcc-11-dev arm64 11.4.0-7 [935 kB] Get:104 http://localhost:3142/debian sid/main arm64 libgslcblas0 arm64 2.7.1+dfsg-6 [72.4 kB] Get:105 http://localhost:3142/debian sid/main arm64 libgsl27 arm64 2.7.1+dfsg-6 [822 kB] Get:106 http://localhost:3142/debian sid/main arm64 libgsl-dev arm64 2.7.1+dfsg-6 [1039 kB] Get:107 http://localhost:3142/debian sid/main amd64 libpkgconf3 amd64 1.8.1-1+b2 [36.4 kB] Get:108 http://localhost:3142/debian sid/main arm64 libstdc++-11-dev arm64 11.4.0-7 [1942 kB] Get:109 http://localhost:3142/debian sid/main amd64 pkgconf-bin amd64 1.8.1-1+b2 [29.7 kB] Get:110 http://localhost:3142/debian sid/main arm64 pkgconf arm64 1.8.1-1+b2 [26.2 kB] Get:111 http://localhost:3142/debian sid/main arm64 pkg-config arm64 1.8.1-1+b2 [14.0 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 1s (192 MB/s) Selecting previously unselected package m4. 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Setting up libxml-namespacesupport-perl (1.12-2) ... Setting up gettext-base (0.21-14) ... Setting up m4 (1.4.19-4) ... Setting up binutils-aarch64-linux-gnu (2.41.50.20231227-1) ... Setting up file (1:5.45-2+b1) ... Setting up libyaml-perl (1.31-1) ... Setting up libxml-sax-base-perl (1.09-3) ... Setting up libio-string-perl (1.08-4) ... Setting up autotools-dev (20220109.1) ... Setting up cross-config (2.6.20) ... Setting up libpkgconf3:amd64 (1.8.1-1+b2) ... Setting up gcc-13-base:arm64 (13.2.0-9) ... Setting up bash-completion (1:2.11-8) ... Setting up gcc-13-cross-base (13.2.0-7cross2) ... Setting up libc6-arm64-cross (2.37-12cross1) ... Setting up autopoint (0.21-14) ... Setting up libitm1-arm64-cross (13.2.0-7cross2) ... Setting up pkgconf-bin (1.8.1-1+b2) ... Setting up autoconf (2.71-3) ... Setting up linux-libc-dev-arm64-cross (6.5.8-1cross1) ... Setting up sensible-utils (0.0.20) ... Setting up libuchardet0:amd64 (0.0.8-1) ... Setting up bison (2:3.8.2+dfsg-1+b1) ... update-alternatives: using /usr/bin/bison.yacc to provide /usr/bin/yacc (yacc) in auto mode Setting up libsub-override-perl (0.10-1) ... Setting up gcc-13-aarch64-linux-gnu-base:amd64 (13.2.0-7cross2) ... Setting up libfile-homedir-perl (1.006-2) ... Setting up libelf1:amd64 (0.190-1+b1) ... Setting up libxml2:amd64 (2.9.14+dfsg-1.3+b2) ... Setting up liblocale-gettext-perl (1.07-6+b1) ... Setting up libgcc-s1-arm64-cross (13.2.0-7cross2) ... Setting up libatomic1-arm64-cross (13.2.0-7cross2) ... Setting up automake (1:1.16.5-1.3) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libfile-stripnondeterminism-perl (1.13.1-1) ... Setting up liblsan0-arm64-cross (13.2.0-7cross2) ... Setting up libgomp1-arm64-cross (13.2.0-7cross2) ... Setting up flex (2.6.4-8.2+b2) ... Setting up gettext (0.21-14) ... Setting up cpp-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libtool (2.4.7-7) ... Setting up libhwasan0-arm64-cross (13.2.0-7cross2) ... Setting up libc6-dev-arm64-cross (2.37-12cross1) ... Setting up pkgconf:arm64 (1.8.1-1+b2) ... Setting up intltool-debian (0.35.0+20060710.6) ... Setting up libstdc++6-arm64-cross (13.2.0-7cross2) ... Setting up dh-autoreconf (20) ... Setting up cpp-aarch64-linux-gnu (4:13.2.0-2) ... Setting up pkg-config:arm64 (1.8.1-1+b2) ... Setting up ucf (3.0043+nmu1) ... Setting up dh-strip-nondeterminism (1.13.1-1) ... Setting up dwz (0.15-1) ... Setting up groff-base (1.23.0-3) ... Setting up libasan8-arm64-cross (13.2.0-7cross2) ... Setting up libtsan2-arm64-cross (13.2.0-7cross2) ... Setting up libubsan1-arm64-cross (13.2.0-7cross2) ... Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.12.0-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-1+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.11.9) ... Setting up gcc-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up libstdc++-13-dev-arm64-cross (13.2.0-7cross2) ... Setting up libxml-simple-perl (2.25-2) ... Setting up g++-13-aarch64-linux-gnu (13.2.0-7cross2) ... Setting up gcc-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up g++-aarch64-linux-gnu (4:13.2.0-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-arm64 (12.10) ... Setting up libgcc-s1:arm64 (13.2.0-9) ... Setting up libc6:arm64 (2.37-13) ... Setting up libhwasan0:arm64 (13.2.0-9) ... Setting up libstdc++6:arm64 (13.2.0-9) ... Setting up liblsan0:arm64 (13.2.0-9) ... Setting up libitm1:arm64 (13.2.0-9) ... Setting up libtsan0:arm64 (11.4.0-7) ... Setting up libkeyutils1:arm64 (1.6.3-2+b2) ... Setting up libgslcblas0:arm64 (2.7.1+dfsg-6) ... Setting up libssl3:arm64 (3.1.4-2) ... Setting up libgsl27:arm64 (2.7.1+dfsg-6) ... Setting up libcrypt1:arm64 (1:4.4.36-4) ... Setting up libcom-err2:arm64 (1.47.0-2+b1) ... Setting up libgomp1:arm64 (13.2.0-9) ... Setting up libasan6:arm64 (11.4.0-7) ... Setting up libkrb5support0:arm64 (1.20.1-5) ... Setting up libatomic1:arm64 (13.2.0-9) ... Setting up libk5crypto3:arm64 (1.20.1-5) ... Setting up libubsan1:arm64 (13.2.0-9) ... Setting up libgcc-11-dev:arm64 (11.4.0-7) ... Setting up libcrypt-dev:arm64 (1:4.4.36-4) ... Setting up libkrb5-3:arm64 (1.20.1-5) ... Setting up libgsl-dev:arm64 (2.7.1+dfsg-6) ... Setting up libgssapi-krb5-2:arm64 (1.20.1-5) ... Setting up libtirpc3:arm64 (1.3.4+ds-1) ... Setting up libtirpc-dev:arm64 (1.3.4+ds-1) ... Setting up libnsl2:arm64 (1.3.0-3) ... Setting up libnsl-dev:arm64 (1.3.0-3) ... Setting up libc6-dev:arm64 (2.37-13) ... Setting up libstdc++-11-dev:arm64 (11.4.0-7) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.37-13) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-13-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.55-1 (2023-09-29) amd64 (x86_64) Toolchain package versions: binutils_2.41.50.20231227-1 dpkg-dev_1.22.2 g++-11_11.4.0-7 g++-13_13.2.0-9 gcc-11_11.4.0-7 gcc-13_13.2.0-9 libc6-dev_2.37-13 libstdc++-11-dev_11.4.0-7 libstdc++-13-dev_13.2.0-9 libstdc++-13-dev-arm64-cross_13.2.0-7cross2 libstdc++6_13.2.0-9 libstdc++6-arm64-cross_13.2.0-7cross2 linux-libc-dev_6.6.9-1 Package versions: adduser_3.137 apt_2.7.8 autoconf_2.71-3 automake_1:1.16.5-1.3 autopoint_0.21-14 autotools-dev_20220109.1 base-files_13 base-passwd_3.6.3 bash_5.2.21-2 bash-completion_1:2.11-8 binutils_2.41.50.20231227-1 binutils-aarch64-linux-gnu_2.41.50.20231227-1 binutils-common_2.41.50.20231227-1 binutils-x86-64-linux-gnu_2.41.50.20231227-1 bison_2:3.8.2+dfsg-1+b1 bsdextrautils_2.39.3-6 bsdutils_1:2.39.3-6 build-essential_12.10 bzip2_1.0.8-5+b2 coreutils_9.4-3+b1 cpp_4:13.2.0-2 cpp-11_11.4.0-7 cpp-13_13.2.0-9 cpp-13-aarch64-linux-gnu_13.2.0-7cross2 cpp-aarch64-linux-gnu_4:13.2.0-2 cross-config_2.6.20 crossbuild-essential-arm64_12.10 dash_0.5.12-6 debconf_1.5.83 debhelper_13.11.9 debian-archive-keyring_2023.4 debianutils_5.16 dh-autoreconf_20 dh-strip-nondeterminism_1.13.1-1 diffutils_1:3.10-1 dpkg_1.22.2 dpkg-cross_2.6.20 dpkg-dev_1.22.2 dwz_0.15-1 e2fsprogs_1.47.0-2+b1 fakeroot_1.32.2-1+b1 file_1:5.45-2+b1 findutils_4.9.0-5 flex_2.6.4-8.2+b2 g++_4:13.2.0-2 g++-11_11.4.0-7 g++-13_13.2.0-9 g++-13-aarch64-linux-gnu_13.2.0-7cross2 g++-aarch64-linux-gnu_4:13.2.0-2 gcc_4:13.2.0-2 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login_1:4.13+dfsg1-3+b1 logsave_1.47.0-2+b1 m4_1.4.19-4 make_4.3-4.1 man-db_2.12.0-1 mawk_1.3.4.20231126-1 mount_2.39.3-6 ncurses-base_6.4+20231209-1 ncurses-bin_6.4+20231209-1 passwd_1:4.13+dfsg1-3+b1 patch_2.7.6-7 perl_5.38.2-2 perl-base_5.38.2-2 perl-modules-5.34_5.34.0-5 perl-modules-5.38_5.38.2-2 pkg-config_1.8.1-1+b2 pkgconf_1.8.1-1+b2 pkgconf-bin_1.8.1-1+b2 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.20 sysvinit-utils_3.08-5 tar_1.35+dfsg-2 tzdata_2023d-1 ucf_3.0043+nmu1 usrmerge_38 util-linux_2.39.3-6 util-linux-extra_2.39.3-6 xz-utils_5.4.5-0.3 zlib1g_1:1.3.dfsg-3 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: mptp Binary: mptp Architecture: any Version: 0.2.4-3 Maintainer: Debian Med Packaging Team Uploaders: Andreas Tille , Nilesh Patra Homepage: https://github.com/Pas-Kapli/mptp Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/mptp Vcs-Git: https://salsa.debian.org/med-team/mptp.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), bison, flex, libgsl-dev, pkg-config, bash-completion Package-List: mptp deb science optional arch=any Checksums-Sha1: db47df2305134fb1c92e1ab125f53405d4e2f073 74267 mptp_0.2.4.orig.tar.gz f909d8af8400a723a9f321e2ba3b9f35b9588b99 29572 mptp_0.2.4-3.debian.tar.xz Checksums-Sha256: 31467d9a98356679f5ee0f417fc8b6b76a0cd3743bd57a29ebff8b43c201abd6 74267 mptp_0.2.4.orig.tar.gz 43a0f3fd5e11fd6d45dec1170ce56f913882b9059516a84268bef9df96ca5d46 29572 mptp_0.2.4-3.debian.tar.xz Files: ad61961ba1b5d4ae3d05d59bce58a4b1 74267 mptp_0.2.4.orig.tar.gz 5c785954f8e73dc04e8c7223f65a900e 29572 mptp_0.2.4-3.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJIBAEBCgAyFiEEPpmlJvXcwMu/HO6mALrnSzQzafEFAl8DFh8UHG5wYXRyYTk3 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signature for ./mptp_0.2.4-3.dsc: no acceptable signature found dpkg-source: info: extracting mptp in /<> dpkg-source: info: unpacking mptp_0.2.4.orig.tar.gz dpkg-source: info: unpacking mptp_0.2.4-3.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying disable_mtune_native.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.VYOYhzD7MV/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-72fc3785-3e10-4887-9636-6a35094de11f SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package mptp dpkg-buildpackage: info: source version 0.2.4-3 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Nilesh Patra dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 debian/rules clean dh clean dh_clean debian/rules binary-arch dh binary-arch dh_update_autotools_config -a dh_autoreconf -a configure.ac:18: warning: AC_PROG_LEX without either yywrap or noyywrap is obsolete ./lib/autoconf/programs.m4:716: _AC_PROG_LEX is expanded from... ./lib/autoconf/programs.m4:709: AC_PROG_LEX is expanded from... configure.ac:18: the top level configure.ac:50: warning: The macro `AC_HELP_STRING' is obsolete. configure.ac:50: You should run autoupdate. ./lib/autoconf/general.m4:204: AC_HELP_STRING is expanded from... configure.ac:50: the top level configure.ac:15: installing './compile' configure.ac:10: installing './config.guess' configure.ac:10: installing './config.sub' configure.ac:6: installing './install-sh' configure.ac:6: installing './missing' src/Makefile.am: installing './depcomp' configure.ac: installing './ylwrap' debian/rules override_dh_auto_configure make[1]: Entering directory '/<>' dh_auto_configure -- --with-bash-completions=`pkg-config --variable=completionsdir bash-completion` ./configure --build=x86_64-linux-gnu --prefix=/usr --includedir=\${prefix}/include --mandir=\${prefix}/share/man --infodir=\${prefix}/share/info --sysconfdir=/etc --localstatedir=/var --disable-option-checking --disable-silent-rules --libdir=\${prefix}/lib/aarch64-linux-gnu --runstatedir=/run --disable-maintainer-mode --disable-dependency-tracking --host=aarch64-linux-gnu --with-bash-completions=/usr/share/bash-completion/completions configure: loading site script /etc/dpkg-cross/cross-config.arm64 Reading Cross Config Cache (/etc/dpkg-cross/cross-config.arm64) Reading /etc/dpkg-cross/cross-config.cache checking for a BSD-compatible install... /usr/bin/install -c checking whether build environment is sane... yes checking for aarch64-linux-gnu-strip... aarch64-linux-gnu-strip checking for a race-free mkdir -p... /usr/bin/mkdir -p checking for gawk... no checking for mawk... mawk checking whether make sets $(MAKE)... yes checking whether make supports nested variables... yes checking build system type... x86_64-pc-linux-gnu checking host system type... aarch64-unknown-linux-gnu ./configure: line 3281: -g: command not found checking for aarch64-linux-gnu-gcc... aarch64-linux-gnu-gcc checking whether the C compiler works... yes checking for C compiler default output file name... a.out checking for suffix of executables... checking whether we are cross compiling... yes checking for suffix of object files... o checking whether the compiler supports GNU C... yes checking whether aarch64-linux-gnu-gcc accepts -g... yes checking for aarch64-linux-gnu-gcc option to enable C11 features... none needed checking whether aarch64-linux-gnu-gcc understands -c and -o together... yes checking whether make supports the include directive... yes (GNU style) checking dependency style of aarch64-linux-gnu-gcc... none checking for aarch64-linux-gnu-ranlib... aarch64-linux-gnu-ranlib checking for a sed that does not truncate output... /usr/bin/sed checking for flex... flex checking for lex output file root... lex.yy checking for lex library... none needed checking for library containing yywrap... no checking whether yytext is a pointer... yes checking for bison... bison -y checking for stdio.h... yes checking for stdlib.h... yes checking for string.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for strings.h... yes checking for sys/stat.h... yes checking for sys/types.h... yes checking for unistd.h... yes checking for assert.h... yes checking for stdio.h... (cached) yes checking for stdarg.h... yes checking for string.h... (cached) yes checking for getopt.h... yes checking for stdlib.h... (cached) yes checking for regex.h... yes checking for ctype.h... yes checking for locale.h... yes checking for limits.h... yes checking for string.h... (cached) yes checking for sys/time.h... yes checking for inline... inline checking for size_t... yes checking for GNU libc compatible malloc... (cached) yes checking for working strtod... no checking for pow... no checking for pow in -lm... yes checking for working alloca.h... yes checking for alloca... yes checking for GNU libc compatible realloc... (cached) yes checking for memmove... yes checking for memcpy... yes checking for gettimeofday... yes checking for memchr... yes checking for memset... yes checking for pow... (cached) no checking for regcomp... yes checking for strcasecmp... yes checking for strchr... yes checking for strcspn... yes checking for sysinfo... yes checking for cos in -lm... yes checking for cblas_dgemm in -lgslcblas... yes checking for gsl_cdf_chisq_P in -lgsl... yes checking for ps2pdf... no configure: WARNING: *** ps2pdf is required to build a PDF version of the manual checking that generated files are newer than configure... done configure: creating ./config.status config.status: creating Makefile config.status: creating src/Makefile config.status: creating man/Makefile config.status: creating completion/Makefile config.status: creating config.h config.status: executing depfiles commands mptp 0.2.4 Target: linux-gnu aarch64 Compiler: aarch64-linux-gnu-gcc CFLAGS: -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wdate-time -D_FORTIFY_SOURCE=2 LIBS: -lgsl -lgslcblas -lm -Wl,-z,relro -Wl,-z,now Continue with 'make' command make[1]: Leaving directory '/<>' debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build override_dh_auto_build --no-parallel make -j1 make[2]: Entering directory '/<>' make all-recursive make[3]: Entering directory '/<>' Making all in src make[4]: Entering directory '/<>/src' aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o arch.o arch.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o auto.o auto.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o aic.o aic.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o mptp.o mptp.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o dp.o dp.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o fasta.o fasta.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o likelihood.o likelihood.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o maps.o maps.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o multirun.o multirun.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o output.o output.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o random.o random.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o rtree.o rtree.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o svg.o svg.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o svg_landscape.o svg_landscape.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o util.o util.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o utree.o utree.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o hash.o hash.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o list.o list.c /bin/bash ../ylwrap parse_utree.y y.tab.c parse_utree.c y.tab.h `echo parse_utree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_utree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/\1_/p' <<<"parse_utree"` /<>/src/parse_utree.y:84.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 84 | %error-verbose | ^~~~~~~~~~~~~~ /<>/src/parse_utree.y:84.1-14: warning: deprecated directive: ‘%error-verbose’, use ‘%define parse.error verbose’ [-Wdeprecated] 84 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /<>/src/parse_utree.y:86.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 86 | %destructor { utree_destroy($$); } subtree | ^~~~~~~~~~~ /<>/src/parse_utree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_utree.h aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parse_utree.o parse_utree.c /bin/bash ../ylwrap lex_utree.l lex.yy.c lex_utree.c -- flex -o lex.yy.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o lex_utree.o lex_utree.c rm -f libparse_utree.a ar cru libparse_utree.a parse_utree.o lex_utree.o ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libparse_utree.a /bin/bash ../ylwrap parse_rtree.y y.tab.c parse_rtree.c y.tab.h `echo parse_rtree.c | sed -e s/cc$/hh/ -e s/cpp$/hpp/ -e s/cxx$/hxx/ -e s/c++$/h++/ -e s/c$/h/` y.output parse_rtree.output -- bison -y -d -p `/usr/bin/sed -n 's/.*_\(.*\)/\1_/p' <<<"parse_rtree"` /<>/src/parse_rtree.y:56.1-14: warning: POSIX Yacc does not support %error-verbose [-Wyacc] 56 | %error-verbose | ^~~~~~~~~~~~~~ /<>/src/parse_rtree.y:56.1-14: warning: deprecated directive: ‘%error-verbose’, use ‘%define parse.error verbose’ [-Wdeprecated] 56 | %error-verbose | ^~~~~~~~~~~~~~ | %define parse.error verbose /<>/src/parse_rtree.y:58.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 58 | %destructor { rtree_destroy($$); } subtree | ^~~~~~~~~~~ /<>/src/parse_rtree.y:59.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 59 | %destructor { free($$); } STRING | ^~~~~~~~~~~ /<>/src/parse_rtree.y:60.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 60 | %destructor { free($$); } NUMBER | ^~~~~~~~~~~ /<>/src/parse_rtree.y:61.1-11: warning: POSIX Yacc does not support %destructor [-Wyacc] 61 | %destructor { free($$); } label | ^~~~~~~~~~~ /<>/src/parse_rtree.y: warning: fix-its can be applied. Rerun with option '--update'. [-Wother] updating parse_rtree.h aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o parse_rtree.o parse_rtree.c /bin/bash ../ylwrap lex_rtree.l lex.yy.c lex_rtree.c -- flex -o lex.yy.c aarch64-linux-gnu-gcc -DHAVE_CONFIG_H -I. -I.. -Wdate-time -D_FORTIFY_SOURCE=2 -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -c -o lex_rtree.o lex_rtree.c rm -f libparse_rtree.a ar cru libparse_rtree.a parse_rtree.o lex_rtree.o ar: `u' modifier ignored since `D' is the default (see `U') aarch64-linux-gnu-ranlib libparse_rtree.a aarch64-linux-gnu-gcc -I. -O3 -Wall -Wsign-compare -g -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wl,-z,relro -Wl,-z,now -o ../bin/mptp arch.o auto.o aic.o mptp.o dp.o fasta.o likelihood.o maps.o multirun.o output.o random.o rtree.o svg.o svg_landscape.o util.o utree.o hash.o list.o libparse_utree.a libparse_rtree.a -lgsl -lgslcblas -lm make[4]: Leaving directory '/<>/src' Making all in man make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/man' Making all in completion make[4]: Entering directory '/<>/completion' make[4]: Nothing to be done for 'all'. make[4]: Leaving directory '/<>/completion' make[4]: Entering directory '/<>' make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_prep -a debian/rules override_dh_auto_install make[1]: Entering directory '/<>' sed -i 's/Supress/Suppress/' man/mptp.1 sed -i 's/conjuction/conjunction/' man/mptp.1 dh_auto_install make -j1 install DESTDIR=/<>/debian/mptp AM_UPDATE_INFO_DIR=no make[2]: Entering directory '/<>' Making install in src make[3]: Entering directory '/<>/src' make[4]: Entering directory '/<>/src' /usr/bin/mkdir -p '/<>/debian/mptp/usr/bin' /usr/bin/install -c ../bin/mptp '/<>/debian/mptp/usr/bin' make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>/src' make[3]: Leaving directory '/<>/src' Making install in man make[3]: Entering directory '/<>/man' make[4]: Entering directory '/<>/man' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/mptp/usr/share/man/man1' /usr/bin/install -c -m 644 mptp.1 '/<>/debian/mptp/usr/share/man/man1' make[4]: Leaving directory '/<>/man' make[3]: Leaving directory '/<>/man' Making install in completion make[3]: Entering directory '/<>/completion' make[4]: Entering directory '/<>/completion' make[4]: Nothing to be done for 'install-exec-am'. /usr/bin/mkdir -p '/<>/debian/mptp/usr/share/bash-completion/completions' /usr/bin/install -c -m 644 mptp '/<>/debian/mptp/usr/share/bash-completion/completions' make[4]: Leaving directory '/<>/completion' make[3]: Leaving directory '/<>/completion' make[3]: Entering directory '/<>' make[4]: Entering directory '/<>' make[4]: Nothing to be done for 'install-exec-am'. make[4]: Nothing to be done for 'install-data-am'. make[4]: Leaving directory '/<>' make[3]: Leaving directory '/<>' make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a dh_compress -a dh_fixperms -a dh_missing -a dh_dwz -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mptp' in '../mptp_0.2.4-3_arm64.deb'. dpkg-deb: building package 'mptp-dbgsym' in '../mptp-dbgsym_0.2.4-3_arm64.deb'. dpkg-genbuildinfo --build=any -O../mptp_0.2.4-3_arm64.buildinfo dpkg-genchanges --build=any -O../mptp_0.2.4-3_arm64.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2024-01-11T04:29:35Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mptp_0.2.4-3_arm64.changes: --------------------------- Format: 1.8 Date: Mon, 06 Jul 2020 17:35:46 +0530 Source: mptp Binary: mptp mptp-dbgsym Built-For-Profiles: cross nocheck Architecture: arm64 Version: 0.2.4-3 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Nilesh Patra Description: mptp - single-locus species delimitation Changes: mptp (0.2.4-3) unstable; urgency=medium . * Add correct information about tests README Checksums-Sha1: 9fb9b810ddbbe2f1081997b816bb47b17350ee82 129568 mptp-dbgsym_0.2.4-3_arm64.deb 985a7a435e03fbea4fa8d0f57e0c97e85230635a 5614 mptp_0.2.4-3_arm64.buildinfo 3905d7b0d5bdc25ce2d31811998ca16776068423 77532 mptp_0.2.4-3_arm64.deb Checksums-Sha256: 2f855ca85da49944b828c0f6a651b8a474a725fbfd4b59c5ff65b6285a2216e3 129568 mptp-dbgsym_0.2.4-3_arm64.deb 2db66901083f88c02ede3b0df2d17b2256459f9a35945e241e06d214719b1fcc 5614 mptp_0.2.4-3_arm64.buildinfo 8ee77d9a51fcd37d82f42f13b1837a833480dde19dc9802a433bec55fae022dd 77532 mptp_0.2.4-3_arm64.deb Files: d14793a1308672b7f43e877e60dc5647 129568 debug optional mptp-dbgsym_0.2.4-3_arm64.deb 655df4b11fe26d1a4eb2319a550b3385 5614 science optional mptp_0.2.4-3_arm64.buildinfo 99e374a15962c9658d42dc254d7c6e87 77532 science optional mptp_0.2.4-3_arm64.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mptp Binary: mptp mptp-dbgsym Architecture: arm64 Version: 0.2.4-3 Checksums-Md5: d14793a1308672b7f43e877e60dc5647 129568 mptp-dbgsym_0.2.4-3_arm64.deb 99e374a15962c9658d42dc254d7c6e87 77532 mptp_0.2.4-3_arm64.deb Checksums-Sha1: 9fb9b810ddbbe2f1081997b816bb47b17350ee82 129568 mptp-dbgsym_0.2.4-3_arm64.deb 3905d7b0d5bdc25ce2d31811998ca16776068423 77532 mptp_0.2.4-3_arm64.deb Checksums-Sha256: 2f855ca85da49944b828c0f6a651b8a474a725fbfd4b59c5ff65b6285a2216e3 129568 mptp-dbgsym_0.2.4-3_arm64.deb 8ee77d9a51fcd37d82f42f13b1837a833480dde19dc9802a433bec55fae022dd 77532 mptp_0.2.4-3_arm64.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Thu, 11 Jan 2024 04:29:35 +0000 Build-Path: /<> Build-Tainted-By: merged-usr-via-aliased-dirs Installed-Build-Depends: autoconf (= 2.71-3), automake (= 1:1.16.5-1.3), autopoint (= 0.21-14), autotools-dev (= 20220109.1), base-files (= 13), base-passwd (= 3.6.3), bash (= 5.2.21-2), bash-completion (= 1:2.11-8), binutils (= 2.41.50.20231227-1), binutils-common (= 2.41.50.20231227-1), binutils-x86-64-linux-gnu (= 2.41.50.20231227-1), bison (= 2:3.8.2+dfsg-1+b1), bsdextrautils (= 2.39.3-6), bsdutils (= 1:2.39.3-6), build-essential (= 12.10), bzip2 (= 1.0.8-5+b2), coreutils (= 9.4-3+b1), cpp (= 4:13.2.0-2), cpp-11 (= 11.4.0-7), cpp-13 (= 13.2.0-9), dash (= 0.5.12-6), debconf (= 1.5.83), debhelper (= 13.11.9), debianutils (= 5.16), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.1-1), diffutils (= 1:3.10-1), dpkg (= 1.22.2), dpkg-dev (= 1.22.2), dwz (= 0.15-1), file (= 1:5.45-2+b1), findutils (= 4.9.0-5), flex (= 2.6.4-8.2+b2), g++ (= 4:13.2.0-2), g++-13 (= 13.2.0-9), gcc (= 4:13.2.0-2), gcc-11 (= 11.4.0-7), gcc-11-base (= 11.4.0-7), gcc-13 (= 13.2.0-9), gcc-13-base (= 13.2.0-9), gettext (= 0.21-14), gettext-base (= 0.21-14), grep (= 3.11-4), groff-base (= 1.23.0-3), gzip (= 1.12-1), hostname (= 3.23+nmu1), init-system-helpers (= 1.66), intltool-debian (= 0.35.0+20060710.6), libacl1 (= 2.3.1-4), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.4.0-7), libasan8 (= 13.2.0-9), libatomic1 (= 13.2.0-9), libattr1 (= 1:2.5.1-5), libaudit-common (= 1:3.1.2-1), libaudit1 (= 1:3.1.2-1), libbinutils (= 2.41.50.20231227-1), libblkid1 (= 2.39.3-6), libbz2-1.0 (= 1.0.8-5+b2), libc-bin (= 2.37-13), libc-dev-bin (= 2.37-13), libc6 (= 2.37-13), libc6-dev (= 2.37-13), libcap-ng0 (= 0.8.4-1), libcap2 (= 1:2.66-4+b2), libcc1-0 (= 13.2.0-9), libcom-err2 (= 1.47.0-2+b1), libcrypt-dev (= 1:4.4.36-4), libcrypt1 (= 1:4.4.36-4), libctf-nobfd0 (= 2.41.50.20231227-1), libctf0 (= 2.41.50.20231227-1), libdb5.3 (= 5.3.28+dfsg2-4+b1), libdebconfclient0 (= 0.271), libdebhelper-perl (= 13.11.9), libdpkg-perl (= 1.22.2), libelf1 (= 0.190-1+b1), libfile-find-rule-perl (= 0.34-3), libfile-stripnondeterminism-perl (= 1.13.1-1), libgcc-11-dev (= 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libpam0g (= 1.5.2-9.1+b1), libpcre2-8-0 (= 10.42-4), libperl5.38 (= 5.38.2-2), libpipeline1 (= 1.5.7-1+b2), libpkgconf3 (= 1.8.1-1+b2), libquadmath0 (= 13.2.0-9), libseccomp2 (= 2.5.5-1), libselinux1 (= 3.5-1+b2), libsframe1 (= 2.41.50.20231227-1), libsmartcols1 (= 2.39.3-6), libssl3 (= 3.1.4-2), libstdc++-13-dev (= 13.2.0-9), libstdc++6 (= 13.2.0-9), libsub-override-perl (= 0.10-1), libsystemd0 (= 255.2-4), libtext-glob-perl (= 0.11-3), libtinfo6 (= 6.4+20231209-1), libtirpc-common (= 1.3.4+ds-1), libtirpc-dev (= 1.3.4+ds-1), libtirpc3 (= 1.3.4+ds-1), libtool (= 2.4.7-7), libtsan0 (= 11.4.0-7), libtsan2 (= 13.2.0-9), libubsan1 (= 13.2.0-9), libuchardet0 (= 0.0.8-1), libudev1 (= 255.2-4), libunistring5 (= 1.1-2), libuuid1 (= 2.39.3-6), libxml2 (= 2.9.14+dfsg-1.3+b2), libzstd1 (= 1.5.5+dfsg2-2), linux-libc-dev (= 6.6.9-1), login (= 1:4.13+dfsg1-3+b1), m4 (= 1.4.19-4), make (= 4.3-4.1), man-db (= 2.12.0-1), mawk (= 1.3.4.20231126-1), ncurses-base (= 6.4+20231209-1), ncurses-bin (= 6.4+20231209-1), patch (= 2.7.6-7), perl (= 5.38.2-2), perl-base (= 5.38.2-2), perl-modules-5.38 (= 5.38.2-2), pkg-config (= 1.8.1-1+b2), pkgconf (= 1.8.1-1+b2), pkgconf-bin (= 1.8.1-1+b2), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.3-1), sed (= 4.9-2), sensible-utils (= 0.0.20), sysvinit-utils (= 3.08-5), tar (= 1.35+dfsg-2), usrmerge (= 38), util-linux (= 2.39.3-6), xz-utils (= 5.4.5-0.3), zlib1g (= 1:1.3.dfsg-3) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" LC_COLLATE="C.UTF-8" SOURCE_DATE_EPOCH="1594037146" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mptp-dbgsym_0.2.4-3_arm64.deb ----------------------------- new Debian package, version 2.0. size 129568 bytes: control archive=528 bytes. 358 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: mptp-dbgsym Source: mptp Version: 0.2.4-3 Auto-Built-Package: debug-symbols Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 154 Depends: mptp (= 0.2.4-3) Section: debug Priority: optional Description: debug symbols for mptp Build-Ids: eff8cc01d86e2d45eb0a97751e94571b6eafd46f drwxr-xr-x root/root 0 2020-07-06 12:05 ./ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/lib/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/lib/debug/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/lib/debug/.build-id/ef/ -rw-r--r-- root/root 147216 2020-07-06 12:05 ./usr/lib/debug/.build-id/ef/f8cc01d86e2d45eb0a97751e94571b6eafd46f.debug drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/doc/ lrwxrwxrwx root/root 0 2020-07-06 12:05 ./usr/share/doc/mptp-dbgsym -> mptp mptp_0.2.4-3_arm64.deb ---------------------- new Debian package, version 2.0. size 77532 bytes: control archive=1408 bytes. 1713 bytes, 35 lines control 541 bytes, 8 lines md5sums Package: mptp Version: 0.2.4-3 Architecture: arm64 Maintainer: Debian Med Packaging Team Installed-Size: 297 Depends: libc6 (>= 2.34), libgsl27 (>= 2.7.1) Recommends: bash-completion Section: science Priority: optional Homepage: https://github.com/Pas-Kapli/mptp Description: single-locus species delimitation Implementation of a fast species delimitation method, based on PTP (Zhang et al. 2013) with a 64-bit multi-threaded design that handles very large datasets. . The tool mPTP can handle very large biodiversity datasets. It implements a fast method to compute the ML delimitation from an inferred phylogenetic tree of the samples. Using MCMC, it also computes the support values for each clade, which can be used to assess the confidence of the ML delimitation. . ML delimitation mPTP implements two flavours of the point-estimate solution. First, it implements the original method from (Zhang et al. 2013) where all within-species processes are modelled with a single exponential distribution. mPTP uses a dynamic programming implementation which estimates the ML delimitation faster and more accurately than the original PTP. The dynamic programming implementation has similar properties as (Gulek et al. 2010). See the wiki for more information. The second method assumes a distinct exponential distribution for the branching events of each of the delimited species allowing it to fit to a wider range of empirical datasets. . MCMC method mPTP generates support values for each clades. They represent the ratio of the number of samples for which a particular node was in the between-species process, to the total number of samples. drwxr-xr-x root/root 0 2020-07-06 12:05 ./ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/bin/ -rwxr-xr-x root/root 134288 2020-07-06 12:05 ./usr/bin/mptp drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/bash-completion/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/bash-completion/completions/ -rw-r--r-- root/root 823 2020-07-06 12:05 ./usr/share/bash-completion/completions/mptp drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/doc/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/doc/mptp/ -rw-r--r-- root/root 4101 2018-05-14 15:59 ./usr/share/doc/mptp/README.md.gz -rw-r--r-- root/root 521 2020-07-06 12:05 ./usr/share/doc/mptp/changelog.Debian.gz -rw-r--r-- root/root 695 2018-05-14 15:59 ./usr/share/doc/mptp/changelog.gz -rw-r--r-- root/root 35464 2020-07-06 10:28 ./usr/share/doc/mptp/copyright drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/doc/mptp/examples/ -rw-r--r-- root/root 105506 2020-07-06 10:32 ./usr/share/doc/mptp/examples/RAxML_bestTree.Clubiona drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/man/ drwxr-xr-x root/root 0 2020-07-06 12:05 ./usr/share/man/man1/ -rw-r--r-- root/root 5144 2020-07-06 12:05 ./usr/share/man/man1/mptp.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [615 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [1350 B] Get:5 copy:/<>/apt_archive ./ Packages [1429 B] Fetched 3394 B in 0s (0 B/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The solver encountered an error of type: ERR_UNSOLVABLE The following information might help you to understand what is wrong: The following packages have unmet dependencies: libtext-xslate-perl : Depends: perlapi-5.36.0 but it is not installable Depends: libmouse-perl but it is not going to be installed Execute external solver... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:arm64 : Depends: lintian:amd64 E: External solver failed with: The following packages have unmet dependencies: apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 4776 Build-Time: 12 Distribution: unstable Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 12 Job: mptp_0.2.4-3 Lintian: error Machine Architecture: amd64 Package: mptp Package-Time: 36 Source-Version: 0.2.4-3 Space: 4776 Status: successful Version: 0.2.4-3 -------------------------------------------------------------------------------- Finished at 2024-01-11T04:29:35Z Build needed 00:00:36, 4776k disk space