sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | mummer 3.23+dfsg-4 (armel) Sun, 06 Oct 2019 17:02:50 +0000 | +==============================================================================+ Package: mummer Version: 3.23+dfsg-4 Source Version: 3.23+dfsg-4 Distribution: unstable Machine Architecture: amd64 Host Architecture: armel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-31f145a9-7bf3-4eb9-845d-87bc10a2f746' with '<>' I: NOTICE: Log filtering will replace 'build/mummer-oLNUFE/resolver-JZe6TK' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-06-0812.49.pdiff [3986 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-06-1415.52.pdiff [7316 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-10-06-1415.52.pdiff [7316 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-06-0812.49.pdiff [33.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-06-1415.52.pdiff [21.1 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main armel Packages [7910 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-10-06-1415.52.pdiff [21.1 kB] Fetched 8170 kB in 2s (4323 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'mummer' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/mummer.git Please use: git clone https://salsa.debian.org/med-team/mummer.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 1528 kB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main mummer 3.23+dfsg-4 (dsc) [2167 B] Get:2 http://debian.oregonstate.edu/debian unstable/main mummer 3.23+dfsg-4 (tar) [1113 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main mummer 3.23+dfsg-4 (diff) [413 kB] Fetched 1528 kB in 0s (39.9 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/mummer-oLNUFE/mummer-3.23+dfsg' with '<>' I: NOTICE: Log filtering will replace 'build/mummer-oLNUFE' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper (>= 11~), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel Filtered Build-Depends: debhelper (>= 11~), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-armel:amd64, libc-dev:armel, libstdc++-dev:armel dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [426 B] Get:5 copy:/<>/apt_archive ./ Packages [519 B] Fetched 1902 B in 0s (95.2 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config fonts-dejavu-core fonts-lmodern g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcairo2 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgraphite2-3 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libio-string-perl libkpathsea6 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libptexenc1 libsigsegv2 libsm6 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libzzip-0-13 linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch gcc-9-doc libstdc++6-9-dbg-armel-cross libgcc1-dbg-armel-cross libgomp1-dbg-armel-cross libitm1-dbg-armel-cross libatomic1-dbg-armel-cross libasan5-dbg-armel-cross liblsan0-dbg-armel-cross libtsan0-dbg-armel-cross libubsan1-dbg-armel-cross libquadmath0-dbg-armel-cross manpages-dev flex bison gdb-arm-linux-gnueabi gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:armel libc-l10n:armel locales:armel manpages-dev:armel libstdc++-9-doc:armel libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl ghostscript gv | postscript-viewer perl-tk xpdf | pdf-viewer xzdec texlive-fonts-recommended-doc texlive-latex-base-doc texlive-latex-recommended-doc texlive-luatex texlive-pstricks Recommended packages: curl | wget | lynx libidn2-0:armel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs libgpm2 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl lmodern dvisvgm tex-gyre tipa libfile-mimeinfo-perl libnet-dbus-perl libx11-protocol-perl x11-utils x11-xserver-utils The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-arm-linux-gnueabi bsdmainutils cpp-9-arm-linux-gnueabi cpp-arm-linux-gnueabi cross-config crossbuild-essential-armel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config fonts-dejavu-core fonts-lmodern g++-9-arm-linux-gnueabi g++-arm-linux-gnueabi gcc-9-arm-linux-gnueabi gcc-9-arm-linux-gnueabi-base gcc-9-base:armel gcc-9-cross-base gcc-arm-linux-gnueabi gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:armel libasan5-armel-cross libatomic1:armel libatomic1-armel-cross libbsd0 libc6:armel libc6-armel-cross libc6-dev:armel libc6-dev-armel-cross libcairo2 libconfig-auto-perl libconfig-inifiles-perl libcroco3 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libexpat1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1 libfreetype6 libgcc-9-dev:armel libgcc-9-dev-armel-cross libgcc1:armel libgcc1-armel-cross libglib2.0-0 libgomp1:armel libgomp1-armel-cross libgraphite2-3 libharfbuzz-icu0 libharfbuzz0b libice6 libicu63 libio-string-perl libkpathsea6 liblocale-gettext-perl libmagic-mgc libmagic1 libncurses6 libpaper-utils libpaper1 libpipeline1 libpixman-1-0 libpng16-16 libptexenc1 libsigsegv2 libsm6 libstdc++-9-dev:armel libstdc++-9-dev-armel-cross libstdc++6:armel libstdc++6-armel-cross libsub-override-perl libsynctex2 libteckit0 libtexlua53 libtexluajit2 libtool libubsan1:armel libubsan1-armel-cross libuchardet0 libx11-6 libx11-data libxau6 libxaw7 libxcb-render0 libxcb-shm0 libxcb1 libxdmcp6 libxext6 libxi6 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libxmu6 libxpm4 libxrender1 libxt6 libyaml-perl libzzip-0-13 linux-libc-dev:armel linux-libc-dev-armel-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:armel sensible-utils t1utils tex-common texlive-base texlive-binaries texlive-fonts-recommended texlive-latex-base texlive-latex-recommended ucf x11-common xdg-utils 0 upgraded, 131 newly installed, 0 to remove and 0 not upgraded. Need to get 126 MB of archives. After this operation, 444 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [940 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b5 [18.9 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 tex-common all 6.12 [53.1 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main armel gcc-9-base armel 9.2.1-8 [193 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-arm-linux-gnueabi amd64 2.32.51.20190909-1 [2721 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi-base amd64 9.2.1-8cross1 [193 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [6809 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-arm-linux-gnueabi amd64 4:9.2.1-3.1 [16.7 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-armel-cross all 2.29-1cross7 [1139 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-armel-cross all 1:9.2.1-8cross1 [39.0 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-armel-cross all 9.2.1-8cross1 [74.9 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-armel-cross all 9.2.1-8cross1 [8932 B] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-armel-cross all 9.2.1-8cross1 [340 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-armel-cross all 9.2.1-8cross1 [376 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-armel-cross all 9.2.1-8cross1 [110 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-armel-cross all 9.2.1-8cross1 [640 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [7143 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1464 B] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-armel-cross all 5.2.9-2cross7 [1312 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-armel-cross all 2.29-1cross7 [2155 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-armel-cross all 9.2.1-8cross1 [1705 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-arm-linux-gnueabi amd64 9.2.1-8cross1 [7387 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 g++-arm-linux-gnueabi amd64 4:9.2.1-3.1 [1180 B] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1+b1 [344 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-armel all 12.8 [6640 B] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.66-2 [103 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 12.6.1 [172 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.62.0-3 [1316 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.6.1 [993 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-lmodern all 2.004.5-6 [4539 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main armel libgcc1 armel 1:9.2.1-8 [39.0 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main armel libc6 armel 2.29-2 [2349 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main armel libasan5 armel 9.2.1-8 [346 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main armel libatomic1 armel 9.2.1-8 [9080 B] Get:83 http://debian.oregonstate.edu/debian unstable/main armel linux-libc-dev armel 5.2.17-1 [1232 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main armel libc6-dev armel 2.29-2 [2196 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-1 [292 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.9.1-4 [379 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2+b1 [347 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libpixman-1-0 amd64 0.36.0-1 [537 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.8-1 [298 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.8-1 [756 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-render0 amd64 1.13.1-2 [109 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb-shm0 amd64 1.13.1-2 [99.2 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libcairo2 amd64 1.16.0-4 [689 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main armel libgomp1 armel 9.2.1-8 [76.7 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main armel libstdc++6 armel 9.2.1-8 [415 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main armel libubsan1 armel 9.2.1-8 [111 kB] Get:103 http://debian.oregonstate.edu/debian unstable/main armel libgcc-9-dev armel 9.2.1-8 [646 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libgraphite2-3 amd64 1.3.13-8 [80.6 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz0b amd64 2.6.2-1 [1335 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 libharfbuzz-icu0 amd64 2.6.2-1 [968 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libkpathsea6 amd64 2019.20190605.51237-3 [169 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 libpaper1 amd64 1.1.28+b1 [21.6 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libpaper-utils amd64 1.1.28+b1 [18.3 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libptexenc1 amd64 2019.20190605.51237-3 [62.8 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB] Get:114 http://debian.oregonstate.edu/debian unstable/main armel libstdc++-9-dev armel 9.2.1-8 [1737 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libsynctex2 amd64 2019.20190605.51237-3 [81.8 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 libteckit0 amd64 2.5.8+ds2-5 [318 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libtexlua53 amd64 2019.20190605.51237-3 [128 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libtexluajit2 amd64 2019.20190605.51237-3 [258 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 libxpm4 amd64 1:3.5.12-1 [49.1 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 libxaw7 amd64 2:1.0.13-1+b2 [201 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 libxi6 amd64 2:1.7.9-1 [82.6 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main amd64 libzzip-0-13 amd64 0.13.62-3.2 [55.4 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main amd64 texlive-binaries amd64 2019.20190605.51237-3 [8054 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main amd64 xdg-utils all 1.1.3-1 [73.3 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 texlive-base all 2019.20190930-1 [20.6 MB] Get:129 http://debian.oregonstate.edu/debian unstable/main amd64 texlive-fonts-recommended all 2019.20190930-1 [5228 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main amd64 texlive-latex-base all 2019.20190930-1 [989 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main amd64 texlive-latex-recommended all 2019.20190930-1 [15.2 MB] debconf: delaying package configuration, since apt-utils is not installed Fetched 126 MB in 2s (69.3 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 14991 files and directories currently installed.) Preparing to unpack .../000-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../001-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../002-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../003-groff-base_1.22.4-3_amd64.deb ... Unpacking groff-base (1.22.4-3) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../004-libpipeline1_1.5.1-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.1-2) ... Selecting previously unselected package man-db. Preparing to unpack .../005-man-db_2.8.7-3_amd64.deb ... Unpacking man-db (2.8.7-3) ... 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Setting up libexpat1:amd64 (2.2.9-1) ... Setting up libpipeline1:amd64 (1.5.1-2) ... Setting up libgraphite2-3:amd64 (1.3.13-8) ... Setting up libpixman-1-0:amd64 (0.36.0-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up libxau6:amd64 (1:1.0.8-1+b2) ... Setting up binutils-arm-linux-gnueabi (2.32.51.20190909-1) ... Setting up libmagic-mgc (1:5.37-5) ... Setting up libtexlua53:amd64 (2019.20190605.51237-3) ... Setting up libarchive-zip-perl (1.66-2) ... Setting up libglib2.0-0:amd64 (2.62.0-3) ... No schema files found: doing nothing. Setting up libtexluajit2:amd64 (2019.20190605.51237-3) ... Setting up libdebhelper-perl (12.6.1) ... Setting up x11-common (1:7.7+19) ... update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults invoke-rc.d: could not determine current runlevel All runlevel operations denied by policy invoke-rc.d: policy-rc.d denied execution of start. Setting up libmagic1:amd64 (1:5.37-5) ... Setting up linux-libc-dev:armel (5.2.17-1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-9) ... Setting up libzzip-0-13:amd64 (0.13.62-3.2) ... Setting up file (1:5.37-5) ... Setting up libyaml-perl (1.29-1) ... Setting up libicu63:amd64 (63.2-2) ... Setting up linux-libc-dev-armel-cross (5.2.9-2cross7) ... Setting up gcc-9-arm-linux-gnueabi-base:amd64 (9.2.1-8cross1) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up libx11-data (2:1.6.8-1) ... Setting up libteckit0:amd64 (2.5.8+ds2-5) ... Setting up libncurses6:amd64 (6.1+20190803-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up t1utils (1.41-3) ... Setting up libpng16-16:amd64 (1.6.37-1) ... Setting up cpp-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up autopoint (0.19.8.1-9) ... Setting up fonts-dejavu-core (2.37-1) ... Setting up gcc-9-cross-base (9.2.1-8cross1) ... Setting up libkpathsea6:amd64 (2019.20190605.51237-3) ... Setting up libc6-armel-cross (2.29-1cross7) ... Setting up sensible-utils (0.0.12) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up fonts-lmodern (2.004.5-6) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev-armel-cross (2.29-1cross7) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up xdg-utils (1.1.3-1) ... Setting up liblocale-gettext-perl (1.07-3+b5) ... Setting up libsynctex2:amd64 (2019.20190605.51237-3) ... Setting up gcc-9-base:armel (9.2.1-8) ... Setting up libfile-stripnondeterminism-perl (1.6.0-1) ... Setting up libice6:amd64 (2:1.0.9-2) ... Setting up libxdmcp6:amd64 (1:1.1.2-3) ... Setting up libxcb1:amd64 (1.13.1-2) ... Setting up libgomp1-armel-cross (9.2.1-8cross1) ... Setting up libtool (2.4.6-11) ... Setting up libxcb-render0:amd64 (1.13.1-2) ... Setting up m4 (1.4.18-2) ... Setting up libxcb-shm0:amd64 (1.13.1-2) ... Setting up libatomic1-armel-cross (9.2.1-8cross1) ... Setting up libgcc1-armel-cross (1:9.2.1-8cross1) ... Setting up libasan5-armel-cross (9.2.1-8cross1) ... Setting up cpp-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up libptexenc1:amd64 (2019.20190605.51237-3) ... Setting up libfreetype6:amd64 (2.9.1-4) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up autoconf (2.69-11) ... Setting up dwz (0.13-1) ... Setting up groff-base (1.22.4-3) ... Setting up libx11-6:amd64 (2:1.6.8-1) ... Setting up libharfbuzz0b:amd64 (2.6.2-1) ... Setting up libsm6:amd64 (2:1.2.3-1) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up libpaper1:amd64 (1.1.28+b1) ... Creating config file /etc/papersize with new version Setting up gettext (0.19.8.1-9) ... Setting up libharfbuzz-icu0:amd64 (2.6.2-1) ... Setting up libxpm4:amd64 (1:3.5.12-1) ... Setting up libxrender1:amd64 (1:0.9.10-1) ... Setting up fontconfig-config (2.13.1-2) ... Setting up libxext6:amd64 (2:1.3.3-1+b2) ... Setting up libpaper-utils (1.1.28+b1) ... Setting up libstdc++6-armel-cross (9.2.1-8cross1) ... Setting up man-db (2.8.7-3) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up tex-common (6.12) ... update-language: texlive-base not installed and configured, doing nothing! Setting up libubsan1-armel-cross (9.2.1-8cross1) ... Setting up libxt6:amd64 (1:1.1.5-1+b3) ... Setting up libgcc-9-dev-armel-cross (9.2.1-8cross1) ... Setting up libxml-libxml-perl (2.0134+dfsg-1+b1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libfontconfig1:amd64 (2.13.1-2+b1) ... Setting up libxmu6:amd64 (2:1.1.2-2+b3) ... Setting up libxi6:amd64 (2:1.7.9-1) ... Setting up po-debconf (1.0.21) ... Setting up libstdc++-9-dev-armel-cross (9.2.1-8cross1) ... Setting up libxaw7:amd64 (2:1.0.13-1+b2) ... Setting up gcc-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up libcairo2:amd64 (1.16.0-4) ... Setting up g++-9-arm-linux-gnueabi (9.2.1-8cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up texlive-binaries (2019.20190605.51237-3) ... update-alternatives: using /usr/bin/xdvi-xaw to provide /usr/bin/xdvi.bin (xdvi.bin) in auto mode update-alternatives: using /usr/bin/bibtex.original to provide /usr/bin/bibtex (bibtex) in auto mode Setting up gcc-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up texlive-base (2019.20190930-1) ... tl-paper: setting paper size for dvips to a4: /var/lib/texmf/dvips/config/config-paper.ps tl-paper: setting paper size for dvipdfmx to a4: /var/lib/texmf/dvipdfmx/dvipdfmx-paper.cfg tl-paper: setting paper size for xdvi to a4: /var/lib/texmf/xdvi/XDvi-paper tl-paper: setting paper size for pdftex to a4: /var/lib/texmf/tex/generic/config/pdftexconfig.tex Setting up libconfig-auto-perl (0.44-1) ... Setting up g++-arm-linux-gnueabi (4:9.2.1-3.1) ... Setting up texlive-latex-base (2019.20190930-1) ... Setting up texlive-latex-recommended (2019.20190930-1) ... Setting up texlive-fonts-recommended (2019.20190930-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-armel (12.8) ... Setting up libgcc1:armel (1:9.2.1-8) ... Setting up libc6:armel (2.29-2) ... Setting up libc6-dev:armel (2.29-2) ... Setting up libstdc++6:armel (9.2.1-8) ... Setting up debhelper (12.6.1) ... Setting up libgomp1:armel (9.2.1-8) ... Setting up dh-autoreconf (19) ... Setting up libasan5:armel (9.2.1-8) ... Setting up libatomic1:armel (9.2.1-8) ... Setting up libubsan1:armel (9.2.1-8) ... Setting up dh-strip-nondeterminism (1.6.0-1) ... Setting up libgcc-9-dev:armel (9.2.1-8) ... Setting up libstdc++-9-dev:armel (9.2.1-8) ... Setting up sbuild-build-depends-main-dummy:armel (0.invalid.0) ... Processing triggers for libc-bin (2.29-2) ... Processing triggers for tex-common (6.12) ... Running updmap-sys. This may take some time... done. Running mktexlsr /var/lib/texmf ... done. Building format(s) --all. This may take some time... done. +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (armel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64) Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-23 g++-9_9.2.1-8 gcc-8_8.3.0-23 gcc-9_9.2.1-8 libc6-dev_2.29-2 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-armel-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-armel-cross_9.2.1-8cross1 linux-libc-dev_5.2.17-1 Package versions: adduser_3.118 apt_1.8.4 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-arm-linux-gnueabi_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-23 cpp-9_9.2.1-8 cpp-9-arm-linux-gnueabi_9.2.1-8cross1 cpp-arm-linux-gnueabi_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-armel_12.8 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.6.1 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.4-1 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 fonts-lmodern_2.004.5-6 g++_4:9.2.1-3.1 g++-8_8.3.0-23 g++-9_9.2.1-8 g++-9-arm-linux-gnueabi_9.2.1-8cross1 g++-arm-linux-gnueabi_4:9.2.1-3.1 gcc_4:9.2.1-3.1 gcc-8_8.3.0-23 gcc-8-base_8.3.0-23 gcc-9_9.2.1-8 gcc-9-arm-linux-gnueabi_9.2.1-8cross1 gcc-9-arm-linux-gnueabi-base_9.2.1-8cross1 gcc-9-base_9.2.1-8 gcc-9-cross-base_9.2.1-8cross1 gcc-arm-linux-gnueabi_4:9.2.1-3.1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.17-3 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3+b1 hostname_3.22+b1 init-system-helpers_1.57 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-5 libapt-pkg5.0_1.8.4 libarchive-zip-perl_1.66-2 libasan5_9.2.1-8 libasan5-armel-cross_9.2.1-8cross1 libatomic1_9.2.1-8 libatomic1-armel-cross_9.2.1-8cross1 libattr1_1:2.4.48-5 libaudit-common_1:2.8.5-2 libaudit1_1:2.8.5-2 libbinutils_2.32.51.20190909-1 libblkid1_2.34-0.1 libbsd0_0.10.0-1 libbz2-1.0_1.0.8-2 libc-bin_2.29-2 libc-dev-bin_2.29-2 libc6_2.29-2 libc6-armel-cross_2.29-1cross7 libc6-dev_2.29-2 libc6-dev-armel-cross_2.29-1cross7 libcairo2_1.16.0-4 libcap-ng0_0.7.9-2+b1 libcc1-0_9.2.1-8 libcom-err2_1.45.4-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebhelper-perl_12.6.1 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libelf1_0.176-1.1 libexpat1_2.2.9-1 libext2fs2_1.45.4-1 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2+b1 libfreetype6_2.9.1-4 libgcc-8-dev_8.3.0-23 libgcc-9-dev_9.2.1-8 libgcc-9-dev-armel-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-armel-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-3 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libglib2.0-0_2.62.0-3 libgmp10_2:6.1.2+dfsg-4 libgnutls30_3.6.9-5 libgomp1_9.2.1-8 libgomp1-armel-cross_9.2.1-8cross1 libgpg-error0_1.36-7 libgraphite2-3_1.3.13-8 libharfbuzz-icu0_2.6.2-1 libharfbuzz0b_2.6.2-1 libhogweed4_3.5.1+really3.4.1-1 libice6_2:1.0.9-2 libicu63_63.2-2 libidn2-0_2.2.0-2 libio-string-perl_1.08-3 libisl19_0.20-2 libisl21_0.21-2 libitm1_9.2.1-8 libkpathsea6_2019.20190605.51237-3 liblocale-gettext-perl_1.07-3+b5 liblsan0_9.2.1-8 liblz4-1_1.8.3-1+b1 liblzma5_5.2.4-1+b1 libmagic-mgc_1:5.37-5 libmagic1_1:5.37-5 libmount1_2.34-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-23 libncurses6_6.1+20190803-1 libncursesw6_6.1+20190803-1 libnettle6_3.5.1+really3.4.1-1 libp11-kit0_0.23.17-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpaper-utils_1.1.28+b1 libpaper1_1.1.28+b1 libpcre2-8-0_10.32-5+b1 libpcre3_2:8.39-12+b1 libperl5.28_5.28.1-6 libperl5.30_5.30.0-5 libpipeline1_1.5.1-2 libpixman-1-0_0.36.0-1 libpng16-16_1.6.37-1 libptexenc1_2019.20190605.51237-3 libquadmath0_9.2.1-8 libseccomp2_2.4.1-2 libselinux1_2.9-2+b2 libsemanage-common_2.9-3 libsemanage1_2.9-3 libsepol1_2.9-2+b2 libsigsegv2_2.12-2 libsm6_2:1.2.3-1 libsmartcols1_2.34-0.1 libss2_1.45.4-1 libstdc++-8-dev_8.3.0-23 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-armel-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-armel-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsynctex2_2019.20190605.51237-3 libsystemd0_242-7 libtasn1-6_4.14-3 libteckit0_2.5.8+ds2-5 libtexlua53_2019.20190605.51237-3 libtexluajit2_2019.20190605.51237-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libubsan1_9.2.1-8 libubsan1-armel-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libx11-6_2:1.6.8-1 libx11-data_2:1.6.8-1 libxau6_1:1.0.8-1+b2 libxaw7_2:1.0.13-1+b2 libxcb-render0_1.13.1-2 libxcb-shm0_1.13.1-2 libxcb1_1.13.1-2 libxdmcp6_1:1.1.2-3 libxext6_2:1.3.3-1+b2 libxi6_2:1.7.9-1 libxml-libxml-perl_2.0134+dfsg-1+b1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.02+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libxmu6_2:1.1.2-2+b3 libxpm4_1:3.5.12-1 libxrender1_1:0.9.10-1 libxt6_1:1.1.5-1+b3 libyaml-perl_1.29-1 libzstd1_1.4.3+dfsg-1 libzzip-0-13_0.13.62-3.2 linux-libc-dev_5.2.17-1 linux-libc-dev-armel-cross_5.2.9-2cross7 login_1:4.7-2 logsave_1.45.4-1 lsb-base_11.1.0 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(quilt) Source: mummer Binary: mummer, mummer-doc Architecture: any all Version: 3.23+dfsg-4 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Andreas Tille , Charles Plessy Homepage: http://mummer.sourceforge.net/ Standards-Version: 4.1.4 Vcs-Browser: https://salsa.debian.org/med-team/mummer Vcs-Git: https://salsa.debian.org/med-team/mummer.git Testsuite: autopkgtest Build-Depends: debhelper (>= 11~), texlive-latex-base, texlive-latex-recommended, texlive-fonts-recommended Package-List: mummer deb science optional arch=any mummer-doc deb doc optional arch=all Checksums-Sha1: 0dc589e7ceeb59d222ec21decf225ba193527330 1112616 mummer_3.23+dfsg.orig.tar.xz b2e721e784c28296fe1c53b14822447f60ccaba3 413452 mummer_3.23+dfsg-4.debian.tar.xz Checksums-Sha256: 1ef5eb11b22ff39d930ea9168ed6852a28be2c21e29ac791c4edcc86eca7d805 1112616 mummer_3.23+dfsg.orig.tar.xz 2e6963920f28a2da2fa8013af6b5d9f7e8e1dcf7ec643a9995a5b456dbfa9b55 413452 mummer_3.23+dfsg-4.debian.tar.xz Files: 64c8ac0f462885f9978b9e49accbc71f 1112616 mummer_3.23+dfsg.orig.tar.xz 9ee47a0033fe497d634a8a338cd9a6d2 413452 mummer_3.23+dfsg-4.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCAAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAlseHoYRHHRpbGxlQGRl Ymlhbi5vcmcACgkQV4oElNHGRtEUwg/+IgL0kqLkjD3B/M7KYBntDewCQ0EBTfZC c5eGSlCdOs1JHIC75RntJvZJrc3Q616Af6Qqu4FJ5xtDYcNLM7+l08XOq/7WqO80 UqD15uVkl34+jYx3q+IR9ikoXYQVJ17uTNhfaYIvGlP6C0Ci5FLzqJac3LJOjrmr LM72EmhWGaNDDtIORjwGf2v+Uh4iOGJ295yTEgF2nWpnlZl7J3ksvWyEORl3TnX1 SRcRCnXM/V4Wi13CPF3pJait26p/6OpYpEU39ea22M5bj87DK9IjMzgVKSJDI+LN cqZQYaCQqUnpiEaLLCLrT2LixQAci4CwfDk/zW3uwgjhtHh7rTQ6zgQiLTJmVS+D QYcUWlGm2ulG0921tVwq47lYFCL0RbTlrjJMZm4iDBVDyhU+2+/2Wu9BPclVWK0v bzBCR+twWkmmVLQjDQ5PD1SH3gojJK+aNlornh9cnk3WqAUZAU09bBZRjPyNkdEM FvBNlU+he0aDl1iu4b4L5m8WCG0c9cwkvHwqFFl/YYZnhNF1wD8+dQYCnF35AfOK /cl0VyccdPRIourGHq/sAfVkNvgxJXOyZJqaiQQ9b4V4lfkSeP4OS2CUF2xxiUB4 rHtlm42qESi4sEbnG9E0+i+rRxFo6Uh5Q64J4rn96y2Pgis6D9hS/PDzDMmXae/C bImnGiAZsQE= =ndsP -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Jun 11 07:02:30 2018 UTC gpgv: using RSA key F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./mummer_3.23+dfsg-4.dsc dpkg-source: info: extracting mummer in /<> dpkg-source: info: unpacking mummer_3.23+dfsg.orig.tar.xz dpkg-source: info: unpacking mummer_3.23+dfsg-4.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying 10_install_dirs.patch dpkg-source: info: applying 02at_docs_web.diff dpkg-source: info: applying enable_building_with_tetex.patch dpkg-source: info: applying fix_sf_privacy_breach_issue.patch dpkg-source: info: applying hardening.patch dpkg-source: info: applying spelling.patch dpkg-source: info: applying addition_from_mugsy.patch dpkg-source: info: applying 0009-improve-performance-of-delta2maf.patch Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.armel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-31f145a9-7bf3-4eb9-845d-87bc10a2f746 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -aarmel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package mummer dpkg-buildpackage: info: source version 3.23+dfsg-4 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type arm-linux-gnueabi does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture armel fakeroot debian/rules clean dh clean dh_auto_clean make -j1 clean make[1]: Entering directory '/<>' csh: not found rm -f *~ core* cd /<>/src/kurtz; make clean make[2]: Entering directory '/<>/src/kurtz' rm -f *~ cd libbasedir; make clean make[3]: Entering directory '/<>/src/kurtz/libbasedir' rm -f *.splint rm -f *.[oa] *.dbg.o *.inc *.aux *.dvi *.log *~ make[3]: Leaving directory '/<>/src/kurtz/libbasedir' cd streesrc; make clean make[3]: Entering directory '/<>/src/kurtz/streesrc' rm -f *.splint rm -f *.[aox] *~ make[3]: Leaving directory '/<>/src/kurtz/streesrc' cd mm3src; make clean make[3]: Entering directory '/<>/src/kurtz/mm3src' rm -f *.splint rm -f *.[ox] shit[123] *~ cd /<>; rm -f maxmat3.x maxmat3.dbg.x mummer make[3]: Leaving directory '/<>/src/kurtz/mm3src' make[2]: Leaving directory '/<>/src/kurtz' cd /<>/src/tigr; make clean make[2]: Entering directory '/<>/src/tigr' rm -f *.o *~ cd /<>; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf cd /<>/aux_bin; rm -f annotate combineMUMs delta-filter gaps mgaps postnuc postpro prenuc prepro repeat-match show-aligns show-coords show-tiling show-snps show-diff delta2blocks delta2maf make[2]: Leaving directory '/<>/src/tigr' cd /<>/scripts; make clean make[2]: Entering directory '/<>/scripts' csh: not found rm -f *~ cd /<>; rm -f exact-tandems mapview mummerplot nucmer promer run-mummer1 run-mummer3 nucmer2xfig dnadiff make[2]: Leaving directory '/<>/scripts' cd /<>/docs; make clean make[2]: Entering directory '/<>/docs' rm -f *.dvi *.aux *.log *.out *~ maxmat3man.pdf make[2]: Leaving directory '/<>/docs' make[1]: Leaving directory '/<>' dh_clean debian/rules build-arch dh build-arch dh_update_autotools_config -a dh_autoreconf -a dh_auto_configure -a debian/rules override_dh_auto_build make[1]: Entering directory '/<>' [ -d /<>/debian/tmp/usr/bin ] || mkdir -p /<>/debian/tmp/usr/bin [ -d /<>/debian/tmp/usr/lib/mummer ] || mkdir -p /<>/debian/tmp/usr/lib/mummer dh_auto_build -- BIN_DIR=/<>/debian/tmp/usr/bin AUX_BIN_DIR=/<>/debian/tmp/usr/lib/mummer \ FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer \ FINAL_SCRIPT_DIR=/usr/share/perl5/ \ CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=arm-linux-gnueabi-pkg-config CXX=arm-linux-gnueabi-g\+\+ CC=arm-linux-gnueabi-gcc BIN_DIR=/<>/mummer-3.23\+dfsg/debian/tmp/usr/bin AUX_BIN_DIR=/<>/mummer-3.23\+dfsg/debian/tmp/usr/lib/mummer FINAL_BIN_DIR=/usr/bin FINAL_AUX_BIN_DIR=/usr/lib/mummer FINAL_SCRIPT_DIR=/usr/share/perl5/ "CFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc" "CXXFLAGS=-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" "LDFLAGS=-Wl,-z,relro -Wl,-z,now" make[2]: Entering directory '/<>' csh: not found cd /<>/src/kurtz; make mummer make[3]: Entering directory '/<>/src/kurtz' cd libbasedir; make libbase.a make[4]: Entering directory '/<>/src/kurtz/libbasedir' arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o cleanMUMcand.o cleanMUMcand.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o clock.o clock.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o mapfile.o mapfile.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o multiseq.o multiseq.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procopt.o procopt.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o safescpy.o safescpy.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o seterror.o seterror.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o space.o space.c ar sruv libbase.a cleanMUMcand.o clock.o mapfile.o multiseq.o procopt.o safescpy.o seterror.o space.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libbase.a a - cleanMUMcand.o a - clock.o a - mapfile.o a - multiseq.o a - procopt.o a - safescpy.o a - seterror.o a - space.o make[4]: Leaving directory '/<>/src/kurtz/libbasedir' cd streesrc; make libstree.a make[4]: Entering directory '/<>/src/kurtz/streesrc' arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o construct.o construct.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o access.o access.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o scanpref.o scanpref.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o linkloc.o linkloc.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o depthtab.o depthtab.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o ex2leav.o ex2leav.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o dfs.o dfs.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o overmax.o overmax.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o oversucc.o oversucc.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o addleafcount.o addleafcount.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -DSTREEHUGE -Wdate-time -D_FORTIFY_SOURCE=2 -c -o iterator.o iterator.c ar sruv libstree.a construct.o access.o scanpref.o linkloc.o depthtab.o ex2leav.o dfs.o overmax.o oversucc.o addleafcount.o iterator.o ar: `u' modifier ignored since `D' is the default (see `U') ar: creating libstree.a a - construct.o a - access.o a - scanpref.o a - linkloc.o a - depthtab.o a - ex2leav.o a - dfs.o a - overmax.o a - oversucc.o a - addleafcount.o a - iterator.o make[4]: Leaving directory '/<>/src/kurtz/streesrc' cd mm3src; make mummer make[4]: Entering directory '/<>/src/kurtz/mm3src' arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmat3.o maxmat3.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatopt.o maxmatopt.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o maxmatinp.o maxmatinp.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmumcand.o findmumcand.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o findmaxmat.o findmaxmat.c arm-linux-gnueabi-gcc -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc -I../libbasedir -I../streesrc -Wdate-time -D_FORTIFY_SOURCE=2 -c -o procmaxmat.o procmaxmat.c arm-linux-gnueabi-gcc -Wl,-z,relro -Wl,-z,now maxmat3.o maxmatopt.o maxmatinp.o findmumcand.o findmaxmat.o procmaxmat.o ../streesrc/libstree.a ../libbasedir/libbase.a \ -o /<>/debian/tmp/usr/bin/mummer; chmod 755 /<>/debian/tmp/usr/bin/mummer make[4]: Leaving directory '/<>/src/kurtz/mm3src' make[3]: Leaving directory '/<>/src/kurtz' cd /<>/src/tigr; make CFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -DSTREEHUGE -I/<>/src/kurtz/libbasedir -I/<>/src/kurtz/streesrc" CXXFLAGS="-g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security" LDFLAGS="-Wl,-z,relro -Wl,-z,now" all make[3]: Entering directory '/<>/src/tigr' arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security tigrinc.cc -c -o tigrinc.o arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now annotate.cc tigrinc.o -o /<>/debian/tmp/usr/bin/annotate; chmod 755 /<>/debian/tmp/usr/bin/annotate arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now combineMUMs.cc tigrinc.o -o /<>/debian/tmp/usr/bin/combineMUMs; chmod 755 /<>/debian/tmp/usr/bin/combineMUMs combineMUMs.cc:26:38: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 26 | #define DEFAULT_ERROR_FILE_NAME "witherrors.gaps" | ^~~~~~~~~~~~~~~~~ combineMUMs.cc:109:27: note: in expansion of macro ‘DEFAULT_ERROR_FILE_NAME’ 109 | char * Error_File_Name = DEFAULT_ERROR_FILE_NAME; | ^~~~~~~~~~~~~~~~~~~~~~~ combineMUMs.cc:135:24: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 135 | char * Query_Suffix = "Query"; | ^~~~~~~ combineMUMs.cc:145:22: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 145 | char * Ref_Suffix = "Ref"; | ^~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security delta.cc -c -o delta.o arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now delta-filter.cc tigrinc.o delta.o -o /<>/debian/tmp/usr/bin/delta-filter; chmod 755 /<>/debian/tmp/usr/bin/delta-filter arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now gaps.cc tigrinc.o -o /<>/debian/tmp/usr/bin/gaps; chmod 755 /<>/debian/tmp/usr/bin/gaps arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now mgaps.cc tigrinc.o -o /<>/debian/tmp/usr/bin/mgaps; chmod 755 /<>/debian/tmp/usr/bin/mgaps mgaps.cc: In function ‘int Process_Cluster(Match_t*, int, char*)’: mgaps.cc:533:20: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 533 | label = "#\n"; | ^~~~~ mgaps.cc: In function ‘void Process_Matches(Match_t*, int, char*)’: mgaps.cc:620:19: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 620 | label = "#\n"; | ^~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security sw_align.cc -c -o sw_align.o arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now postnuc.cc tigrinc.o sw_align.o -o /<>/debian/tmp/usr/lib/mummer/postnuc; chmod 755 /<>/debian/tmp/usr/lib/mummer/postnuc arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security translate.cc -c -o translate.o arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now postpro.cc tigrinc.o sw_align.o translate.o -o /<>/debian/tmp/usr/lib/mummer/postpro; chmod 755 /<>/debian/tmp/usr/lib/mummer/postpro arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now prenuc.cc tigrinc.o -o /<>/debian/tmp/usr/lib/mummer/prenuc; chmod 755 /<>/debian/tmp/usr/lib/mummer/prenuc arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now prepro.cc tigrinc.o translate.o -o /<>/debian/tmp/usr/lib/mummer/prepro; chmod 755 /<>/debian/tmp/usr/lib/mummer/prepro arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now repeat-match.cc tigrinc.o -o /<>/debian/tmp/usr/bin/repeat-match; chmod 755 /<>/debian/tmp/usr/bin/repeat-match arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now show-aligns.cc tigrinc.o translate.o delta.o -o /<>/debian/tmp/usr/bin/show-aligns; chmod 755 /<>/debian/tmp/usr/bin/show-aligns arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now show-coords.cc tigrinc.o delta.o -o /<>/debian/tmp/usr/bin/show-coords; chmod 755 /<>/debian/tmp/usr/bin/show-coords show-coords.cc: In function ‘void printBtab(std::vector)’: show-coords.cc:799:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 799 | type = "NUCMER"; | ^~~~~~~~ show-coords.cc:801:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 801 | type = "PROMER"; | ^~~~~~~~ show-coords.cc:803:12: warning: ISO C++ forbids converting a string constant to ‘char*’ [-Wwrite-strings] 803 | type = "NULL"; | ^~~~~~ arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now show-tiling.cc tigrinc.o delta.o -o /<>/debian/tmp/usr/bin/show-tiling; chmod 755 /<>/debian/tmp/usr/bin/show-tiling arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now show-snps.cc tigrinc.o translate.o delta.o -o /<>/debian/tmp/usr/bin/show-snps; chmod 755 /<>/debian/tmp/usr/bin/show-snps arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now show-diff.cc tigrinc.o delta.o -o /<>/debian/tmp/usr/bin/show-diff; chmod 755 /<>/debian/tmp/usr/bin/show-diff arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now delta2blocks.cc tigrinc.o translate.o delta.o -o /<>/debian/tmp/usr/bin/delta2blocks; chmod 755 /<>/debian/tmp/usr/bin/delta2blocks delta2blocks.cc: In function ‘void printAlignments(std::vector, char*, char*, char*, char*)’: delta2blocks.cc:408:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:26: warning: format ‘%d’ expects argument of type ‘int’, but argument 5 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld delta2blocks.cc:408:32: warning: format ‘%d’ expects argument of type ‘int’, but argument 7 has type ‘long int’ [-Wformat=] 408 | printf ("%s %s %d %d %d %d ",IdR,IdQ, Ap->sR,Ap->eR,Ap->sQ,Ap->eQ); | ~^ ~~~~~~ | | | | int long int | %ld arm-linux-gnueabi-g++ -g -O2 -fdebug-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -Wl,-z,relro -Wl,-z,now delta2maf.cc tigrinc.o translate.o delta.o -o /<>/debian/tmp/usr/bin/delta2maf; chmod 755 /<>/debian/tmp/usr/bin/delta2maf delta2maf.cc: In function ‘void printAlignments(std::vector, char*, char*, std::map, char*>&)’: delta2maf.cc:547:24: warning: format ‘%d’ expects argument of type ‘int’, but argument 2 has type ‘long int’ [-Wformat=] 547 | printf("a score=%d\n",abs(Ap->eR - Ap->sR)); | ~^ ~~~~~~~~~~~~~~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:587:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:587:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 587 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "-",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:590:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:590:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 590 | printf("s %s %d %d %s %d ", IdQ, sQ-1, eQ-sQ+1, "+",SeqLenQ); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:597:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:597:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 597 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "-",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~ | | | | int long int | %ld delta2maf.cc:600:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:600:29: warning: format ‘%d’ expects argument of type ‘int’, but argument 6 has type ‘long int’ [-Wformat=] 600 | printf("s %s %d %d %s %d ", IdR, sR-1, eR-sR+1, "+",SeqLenR); | ~^ ~~~~~~~ | | | | int long int | %ld delta2maf.cc:633:13: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 633 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:637:13: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 637 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:659:14: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 659 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:663:14: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 663 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:710:16: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 710 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:714:16: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 714 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:732:17: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 732 | printf("%s", &Buff2); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* delta2maf.cc:736:17: warning: format ‘%s’ expects argument of type ‘char*’, but argument 2 has type ‘char (*)[(Screen_Width + 1)]’ [-Wformat=] 736 | printf("%s", &Buff1); | ~^ ~~~~~~ | | | | | char (*)[(Screen_Width + 1)] | char* make[3]: Leaving directory '/<>/src/tigr' cd /<>/scripts; make all make[3]: Entering directory '/<>/scripts' csh: not found cp -a ../debian/sh-replacement-scripts/exact-tandems /<>/debian/tmp/usr/bin chmod 755 /<>/debian/tmp/usr/bin/exact-tandems /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ mapview.pl > /<>/debian/tmp/usr/bin/mapview chmod 755 /<>/debian/tmp/usr/bin/mapview /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ mummerplot.pl > /<>/debian/tmp/usr/bin/mummerplot chmod 755 /<>/debian/tmp/usr/bin/mummerplot /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ nucmer.pl > /<>/debian/tmp/usr/bin/nucmer chmod 755 /<>/debian/tmp/usr/bin/nucmer /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__AUX_BIN_DIR?/usr/lib/mummer?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ promer.pl > /<>/debian/tmp/usr/bin/promer chmod 755 /<>/debian/tmp/usr/bin/promer cp -a ../debian/sh-replacement-scripts/run-mummer1 /<>/debian/tmp/usr/bin chmod 755 /<>/debian/tmp/usr/bin/run-mummer1 cp -a ../debian/sh-replacement-scripts/run-mummer3 /<>/debian/tmp/usr/bin chmod 755 /<>/debian/tmp/usr/bin/run-mummer3 /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ nucmer2xfig.pl > /<>/debian/tmp/usr/bin/nucmer2xfig chmod 755 /<>/debian/tmp/usr/bin/nucmer2xfig /bin/sed -e 's?__PERL_PATH?/usr/bin/perl?g' \ -e 's?__SCRIPT_DIR?/usr/share/perl5/?g' \ -e 's?__BIN_DIR?/usr/bin?g' \ dnadiff.pl > /<>/debian/tmp/usr/bin/dnadiff chmod 755 /<>/debian/tmp/usr/bin/dnadiff make[3]: Leaving directory '/<>/scripts' make[2]: Leaving directory '/<>' /usr/bin/make -C docs make[2]: Entering directory '/<>/docs' pdflatex maxmat3man This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) No file maxmat3man.aux. (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) LaTeX Warning: Reference `SecBasicNotions' on page 1 undefined on input line 34 . Overfull \hbox (4.79204pt too wide) in paragraph at lines 58--59 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] LaTeX Warning: Reference `SecBasicNotions' on page 2 undefined on input line 10 2. [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 223--223 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) LaTeX Warning: There were undefined references. LaTeX Warning: Label(s) may have changed. Rerun to get cross-references right. ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 134277 bytes). Transcript written on maxmat3man.log. pdflatex maxmat3man This is pdfTeX, Version 3.14159265-2.6-1.40.20 (TeX Live 2019/Debian) (preloaded format=pdflatex) restricted \write18 enabled. entering extended mode (./maxmat3man.tex LaTeX2e <2018-12-01> (/usr/share/texlive/texmf-dist/tex/latex/base/article.cls Document Class: article 2018/09/03 v1.4i Standard LaTeX document class (/usr/share/texlive/texmf-dist/tex/latex/base/size12.clo)) (/usr/share/texlive/texmf-dist/tex/latex/ntgclass/a4.sty) (/usr/share/texlive/texmf-dist/tex/latex/base/alltt.sty) (/usr/share/texlive/texmf-dist/tex/latex/tools/xspace.sty) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/times.sty) (./skaff.sty) (./optionman.sty) (./maxmat3man.aux) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1ptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/omsptm.fd) (/usr/share/texlive/texmf-dist/tex/latex/psnfss/ot1pcr.fd) Overfull \hbox (4.79204pt too wide) in paragraph at lines 58--59 \OT1/ptm/m/n/12 Compute \OT1/ptm/m/it/12 MUM\OT1/ptm/m/n/12 -candidates, i.e. m atches that are unique in the reference-sequence [1{/var/lib/texmf/fonts/map/pdftex/updmap/pdftex.map}] [2] [3] Overfull \hbox (8.54073pt too wide) in paragraph at lines 223--223 []\OT1/pcr/m/n/10.95 # ........................................................ ......[] [4] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALL2_BOVIN|ALLERGEN 139 1 155 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALG3_YEAST|PUTATIVE 425 2 904 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALF_TRYBB|FRUCTOSE-BISPHOSPHATE 177 4 794 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_YEAST|ALG11 114 12 599 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 354 33 261 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 212 40 991 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 314 41 093 7[] [5] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALGB_PSEAE|ALGINATE 360 41 138 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALR_SYNY3|ALANINE 79 44 186 7[] Overfull \hbox (15.11072pt too wide) in paragraph at lines 296--296 [] \OT1/pcr/m/n/10.95 sp|ALP_CEPAC|ALKALINE 366 45 304 7[] [6] [7] (./maxmat3man.aux) ) (see the transcript file for additional information){/usr/share/texlive/texmf-d ist/fonts/enc/dvips/base/8r.enc} Output written on maxmat3man.pdf (7 pages, 133602 bytes). Transcript written on maxmat3man.log. make[2]: Leaving directory '/<>/docs' make[1]: Leaving directory '/<>' debian/rules override_dh_auto_test make[1]: Entering directory '/<>' /usr/bin/make check make[2]: Entering directory '/<>' csh: not found ERROR: 'csh' C-shell not found check complete make[2]: Leaving directory '/<>' make[1]: Leaving directory '/<>' create-stamp debian/debhelper-build-stamp fakeroot debian/rules binary-arch dh binary-arch dh_testroot -a debian/rules override_dh_prep make[1]: Entering directory '/<>' dh_prep -X debian/tmp make[1]: Leaving directory '/<>' debian/rules override_dh_auto_install make[1]: Entering directory '/<>' mv /<>/debian/tmp/usr/bin/annotate /<>/debian/tmp/usr/bin/mummer-annotate make[1]: Leaving directory '/<>' dh_install -a dh_installdocs -a dh_installchangelogs -a dh_installexamples -a dh_installman -a dh_perl -a dh_link -a dh_strip_nondeterminism -a debian/rules override_dh_compress make[1]: Entering directory '/<>' dh_compress -Xpdf make[1]: Leaving directory '/<>' dh_fixperms -a dh_missing -a dh_strip -a dh_makeshlibs -a dh_shlibdeps -a dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-tiling contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta-filter contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-snps contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-aligns contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/mummer-annotate contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2blocks contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-coords contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/show-diff contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dpkg-shlibdeps: warning: debian/mummer/usr/bin/delta2maf contains an unresolvable reference to symbol __aeabi_atexit@CXXABI_ARM_1.3.3: it's probably a plugin dh_installdeb -a dh_gencontrol -a dh_md5sums -a dh_builddeb -a dpkg-deb: building package 'mummer' in '../mummer_3.23+dfsg-4_armel.deb'. dpkg-deb: building package 'mummer-dbgsym' in '../mummer-dbgsym_3.23+dfsg-4_armel.deb'. dpkg-genbuildinfo --build=any dpkg-genchanges --build=any >../mummer_3.23+dfsg-4_armel.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2019-10-06T17:04:37Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ mummer_3.23+dfsg-4_armel.changes: --------------------------------- Format: 1.8 Date: Mon, 11 Jun 2018 08:38:49 +0200 Source: mummer Binary: mummer mummer-dbgsym Built-For-Profiles: cross nocheck Architecture: armel Version: 3.23+dfsg-4 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: mummer - Efficient sequence alignment of full genomes Closes: 901261 Changes: mummer (3.23+dfsg-4) unstable; urgency=medium . [ Helmut Grohne ] * Fix FTCBFS: Let dh_auto_build pass cross tools to make. (Closes: #901261) . [ Andreas Tille ] * Standards-Version: 4.1.4 * Point Vcs-fields to Salsa * debhelper 11 * doc-base: debhelper 11 moves docs to /usr/share/doc/mummer - adapt path Checksums-Sha1: 11b1b679e699751e713f66a9f3e09bc014657997 4176312 mummer-dbgsym_3.23+dfsg-4_armel.deb e45471ca497a57ad97673e3508c3c3630e8b2d3b 6118 mummer_3.23+dfsg-4_armel.buildinfo cd0980b0a5ce9df0f3a85b3148858c88ee97e5ef 780416 mummer_3.23+dfsg-4_armel.deb Checksums-Sha256: eb1a5af06579515465b3fa74336ad4b47cce512699ba535034d091a30d459f8c 4176312 mummer-dbgsym_3.23+dfsg-4_armel.deb 3fac34dedfde4bec94611b7d8975e0bb49ed3a69837f63a0fad823721afa0885 6118 mummer_3.23+dfsg-4_armel.buildinfo c5c3b4725d769d9e97433162c02cd62b0662ecb53b1436746a6c94584069a904 780416 mummer_3.23+dfsg-4_armel.deb Files: 6b8504d4ecda9b3dd8d6b7ae0ca50520 4176312 debug optional mummer-dbgsym_3.23+dfsg-4_armel.deb 7795c3bfe9a929253c753e6605cacba2 6118 science optional mummer_3.23+dfsg-4_armel.buildinfo e4fa4854215d5c1d59276286007bc980 780416 science optional mummer_3.23+dfsg-4_armel.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: mummer Binary: mummer mummer-doc Architecture: armel Version: 3.23+dfsg-4 Checksums-Md5: 6b8504d4ecda9b3dd8d6b7ae0ca50520 4176312 mummer-dbgsym_3.23+dfsg-4_armel.deb e4fa4854215d5c1d59276286007bc980 780416 mummer_3.23+dfsg-4_armel.deb Checksums-Sha1: 11b1b679e699751e713f66a9f3e09bc014657997 4176312 mummer-dbgsym_3.23+dfsg-4_armel.deb cd0980b0a5ce9df0f3a85b3148858c88ee97e5ef 780416 mummer_3.23+dfsg-4_armel.deb Checksums-Sha256: eb1a5af06579515465b3fa74336ad4b47cce512699ba535034d091a30d459f8c 4176312 mummer-dbgsym_3.23+dfsg-4_armel.deb c5c3b4725d769d9e97433162c02cd62b0662ecb53b1436746a6c94584069a904 780416 mummer_3.23+dfsg-4_armel.deb Build-Origin: Debian Build-Architecture: amd64 Build-Date: Sun, 06 Oct 2019 17:04:36 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.69-11), automake (= 1:1.16.1-4), autopoint (= 0.19.8.1-9), autotools-dev (= 20180224.1), base-files (= 11), base-passwd (= 3.5.46), bash (= 5.0-4), binutils (= 2.32.51.20190909-1), binutils-common (= 2.32.51.20190909-1), binutils-x86-64-linux-gnu (= 2.32.51.20190909-1), bsdmainutils (= 11.1.2+b1), bsdutils (= 1:2.34-0.1), build-essential (= 12.8), bzip2 (= 1.0.8-2), coreutils (= 8.30-3+b1), cpp (= 4:9.2.1-3.1), cpp-8 (= 8.3.0-23), cpp-9 (= 9.2.1-8), dash (= 0.5.10.2-6), debconf (= 1.5.73), debhelper (= 12.6.1), debianutils (= 4.9), dh-autoreconf (= 19), dh-strip-nondeterminism (= 1.6.0-1), diffutils (= 1:3.7-3), dpkg (= 1.19.7), dpkg-dev (= 1.19.7), dwz (= 0.13-1), fdisk (= 2.34-0.1), file (= 1:5.37-5), findutils (= 4.7.0-1), fontconfig-config (= 2.13.1-2), fonts-dejavu-core (= 2.37-1), fonts-lmodern (= 2.004.5-6), g++ (= 4:9.2.1-3.1), g++-9 (= 9.2.1-8), gcc (= 4:9.2.1-3.1), gcc-8 (= 8.3.0-23), gcc-8-base (= 8.3.0-23), gcc-9 (= 9.2.1-8), gcc-9-base (= 9.2.1-8), gettext (= 0.19.8.1-9), gettext-base (= 0.19.8.1-9), grep (= 3.3-1), groff-base (= 1.22.4-3), gzip (= 1.9-3+b1), hostname (= 3.22+b1), init-system-helpers (= 1.57), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.2.53-5), libarchive-zip-perl (= 1.66-2), libasan5 (= 9.2.1-8), libatomic1 (= 9.2.1-8), libattr1 (= 1:2.4.48-5), libaudit-common (= 1:2.8.5-2), libaudit1 (= 1:2.8.5-2), libbinutils (= 2.32.51.20190909-1), libblkid1 (= 2.34-0.1), libbsd0 (= 0.10.0-1), libbz2-1.0 (= 1.0.8-2), libc-bin (= 2.29-2), libc-dev-bin (= 2.29-2), libc6 (= 2.29-2), libc6-dev (= 2.29-2), libcairo2 (= 1.16.0-4), libcap-ng0 (= 0.7.9-2+b1), libcc1-0 (= 9.2.1-8), libcroco3 (= 0.6.13-1), libdb5.3 (= 5.3.28+dfsg1-0.6), libdebconfclient0 (= 0.249), libdebhelper-perl (= 12.6.1), libdpkg-perl (= 1.19.7), libelf1 (= 0.176-1.1), libexpat1 (= 2.2.9-1), libfdisk1 (= 2.34-0.1), libffi6 (= 3.2.1-9), libfile-stripnondeterminism-perl (= 1.6.0-1), libfontconfig1 (= 2.13.1-2+b1), libfreetype6 (= 2.9.1-4), libgcc-8-dev (= 8.3.0-23), libgcc-9-dev (= 9.2.1-8), libgcc1 (= 1:9.2.1-8), libgcrypt20 (= 1.8.5-3), libgdbm-compat4 (= 1.18.1-5), libgdbm6 (= 1.18.1-5), libglib2.0-0 (= 2.62.0-3), libgmp10 (= 2:6.1.2+dfsg-4), libgomp1 (= 9.2.1-8), libgpg-error0 (= 1.36-7), libgraphite2-3 (= 1.3.13-8), libharfbuzz-icu0 (= 2.6.2-1), libharfbuzz0b (= 2.6.2-1), libice6 (= 2:1.0.9-2), libicu63 (= 63.2-2), libisl21 (= 0.21-2), libitm1 (= 9.2.1-8), libkpathsea6 (= 2019.20190605.51237-3), liblsan0 (= 9.2.1-8), liblz4-1 (= 1.8.3-1+b1), liblzma5 (= 5.2.4-1+b1), libmagic-mgc (= 1:5.37-5), libmagic1 (= 1:5.37-5), libmount1 (= 2.34-0.1), libmpc3 (= 1.1.0-1), libmpfr6 (= 4.0.2-1), libmpx2 (= 8.3.0-23), libncurses6 (= 6.1+20190803-1), libncursesw6 (= 6.1+20190803-1), libpam-modules (= 1.3.1-5), libpam-modules-bin (= 1.3.1-5), libpam-runtime (= 1.3.1-5), libpam0g (= 1.3.1-5), libpaper-utils (= 1.1.28+b1), libpaper1 (= 1.1.28+b1), libpcre2-8-0 (= 10.32-5+b1), libpcre3 (= 2:8.39-12+b1), libperl5.30 (= 5.30.0-5), libpipeline1 (= 1.5.1-2), libpixman-1-0 (= 0.36.0-1), libpng16-16 (= 1.6.37-1), libptexenc1 (= 2019.20190605.51237-3), libquadmath0 (= 9.2.1-8), libseccomp2 (= 2.4.1-2), libselinux1 (= 2.9-2+b2), libsigsegv2 (= 2.12-2), libsm6 (= 2:1.2.3-1), libsmartcols1 (= 2.34-0.1), libstdc++-9-dev (= 9.2.1-8), libstdc++6 (= 9.2.1-8), libsub-override-perl (= 0.09-2), libsynctex2 (= 2019.20190605.51237-3), libsystemd0 (= 242-7), libteckit0 (= 2.5.8+ds2-5), libtexlua53 (= 2019.20190605.51237-3), libtexluajit2 (= 2019.20190605.51237-3), libtinfo6 (= 6.1+20190803-1), libtool (= 2.4.6-11), libtsan0 (= 9.2.1-8), libubsan1 (= 9.2.1-8), libuchardet0 (= 0.0.6-3), libudev1 (= 242-7), libunistring2 (= 0.9.10-2), libuuid1 (= 2.34-0.1), libx11-6 (= 2:1.6.8-1), libx11-data (= 2:1.6.8-1), libxau6 (= 1:1.0.8-1+b2), libxaw7 (= 2:1.0.13-1+b2), libxcb-render0 (= 1.13.1-2), libxcb-shm0 (= 1.13.1-2), libxcb1 (= 1.13.1-2), libxdmcp6 (= 1:1.1.2-3), libxext6 (= 2:1.3.3-1+b2), libxi6 (= 2:1.7.9-1), libxml2 (= 2.9.4+dfsg1-7+b3), libxmu6 (= 2:1.1.2-2+b3), libxpm4 (= 1:3.5.12-1), libxrender1 (= 1:0.9.10-1), libxt6 (= 1:1.1.5-1+b3), libzzip-0-13 (= 0.13.62-3.2), linux-libc-dev (= 5.2.17-1), login (= 1:4.7-2), lsb-base (= 11.1.0), m4 (= 1.4.18-2), make (= 4.2.1-1.2), man-db (= 2.8.7-3), mawk (= 1.3.3-17+b3), ncurses-base (= 6.1+20190803-1), ncurses-bin (= 6.1+20190803-1), patch (= 2.7.6-6), perl (= 5.30.0-5), perl-base (= 5.30.0-5), perl-modules-5.30 (= 5.30.0-5), po-debconf (= 1.0.21), sed (= 4.7-1), sensible-utils (= 0.0.12), sysvinit-utils (= 2.96~beta-3), t1utils (= 1.41-3), tar (= 1.30+dfsg-6+b1), tex-common (= 6.12), texlive-base (= 2019.20190930-1), texlive-binaries (= 2019.20190605.51237-3), texlive-fonts-recommended (= 2019.20190930-1), texlive-latex-base (= 2019.20190930-1), texlive-latex-recommended (= 2019.20190930-1), ucf (= 3.0038+nmu1), util-linux (= 2.34-0.1), x11-common (= 1:7.7+19), xdg-utils (= 1.1.3-1), xz-utils (= 5.2.4-1+b1), zlib1g (= 1:1.2.11.dfsg-1+b1) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_US.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1528699129" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ mummer-dbgsym_3.23+dfsg-4_armel.deb ----------------------------------- new Debian package, version 2.0. size 4176312 bytes: control archive=1372 bytes. 1072 bytes, 12 lines control 1908 bytes, 18 lines md5sums Package: mummer-dbgsym Source: mummer Version: 3.23+dfsg-4 Auto-Built-Package: debug-symbols Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 4380 Depends: mummer (= 3.23+dfsg-4) Section: debug Priority: optional Description: debug symbols for mummer Build-Ids: 00231c246ab4c8d4f86d7628955e6cc5f8a24b31 032cef6ac27467cc3215af0f7ab95e78ba0f9d36 11b021405904d60e749258546b2ca544fc1e09a6 2880a2fb41ed68d323a7e8c9a1ab4ada8d106343 43ae39f33aed4209031ceacf2554e64598a9f414 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./usr/lib/debug/.build-id/f1/6aaa1ca5638c3fbe5de885325b90d6356771f6.debug drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/lib/debug/.build-id/fb/ -rw-r--r-- root/root 477864 2018-06-11 06:38 ./usr/lib/debug/.build-id/fb/663d1ffce3edd9e5b2899dca99f627f65f9368.debug drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/doc/ lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/doc/mummer-dbgsym -> mummer mummer_3.23+dfsg-4_armel.deb ---------------------------- new Debian package, version 2.0. size 780416 bytes: control archive=2640 bytes. 1094 bytes, 21 lines control 4473 bytes, 63 lines md5sums Package: mummer Version: 3.23+dfsg-4 Architecture: armel Maintainer: Debian Med Packaging Team Installed-Size: 1755 Depends: libc6 (>= 2.29), libgcc1 (>= 1:3.5), libstdc++6 (>= 5.2), perl, gawk Section: science Priority: optional Homepage: http://mummer.sourceforge.net/ Description: Efficient sequence alignment of full genomes MUMmer is a system for rapidly aligning entire genomes, whether in complete or draft form. For example, MUMmer 3.0 can find all 20-basepair or longer exact matches between a pair of 5-megabase genomes in 13.7 seconds, using 78 MB of memory, on a 2.4 GHz Linux desktop computer. MUMmer can also align incomplete genomes; it handles the 100s or 1000s of contigs from a shotgun sequencing project with ease, and will align them to another set of contigs or a genome using the NUCmer program included with the system. If the species are too divergent for DNA sequence alignment to detect similarity, then the PROmer program can generate alignments based upon the six-frame translations of both input sequences. drwxr-xr-x root/root 0 2018-06-11 06:38 ./ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/bin/ -rwxr-xr-x root/root 42472 2018-06-11 06:38 ./usr/bin/combineMUMs -rwxr-xr-x root/root 54744 2018-06-11 06:38 ./usr/bin/delta-filter -rwxr-xr-x root/root 71132 2018-06-11 06:38 ./usr/bin/delta2blocks -rwxr-xr-x root/root 95712 2018-06-11 06:38 ./usr/bin/delta2maf -rwxr-xr-x root/root 26821 2018-06-11 06:38 ./usr/bin/dnadiff -rwxr-xr-x root/root 766 2018-06-11 06:38 ./usr/bin/exact-tandems -rwxr-xr-x root/root 17872 2018-06-11 06:38 ./usr/bin/gaps -rwxr-xr-x root/root 29757 2018-06-11 06:38 ./usr/bin/mapview -rwxr-xr-x root/root 17896 2018-06-11 06:38 ./usr/bin/mgaps -rwxr-xr-x root/root 50588 2018-06-11 06:38 ./usr/bin/mummer -rwxr-xr-x root/root 21968 2018-06-11 06:38 ./usr/bin/mummer-annotate -rwxr-xr-x root/root 49694 2018-06-11 06:38 ./usr/bin/mummerplot -rwxr-xr-x root/root 12390 2018-06-11 06:38 ./usr/bin/nucmer -rwxr-xr-x root/root 5884 2018-06-11 06:38 ./usr/bin/nucmer2xfig -rwxr-xr-x root/root 11898 2018-06-11 06:38 ./usr/bin/promer -rwxr-xr-x root/root 26080 2018-06-11 06:38 ./usr/bin/repeat-match -rwxr-xr-x root/root 981 2018-06-11 06:38 ./usr/bin/run-mummer1 -rwxr-xr-x root/root 1115 2018-06-11 06:38 ./usr/bin/run-mummer3 -rwxr-xr-x root/root 83420 2018-06-11 06:38 ./usr/bin/show-aligns -rwxr-xr-x root/root 79316 2018-06-11 06:38 ./usr/bin/show-coords -rwxr-xr-x root/root 62928 2018-06-11 06:38 ./usr/bin/show-diff -rwxr-xr-x root/root 91604 2018-06-11 06:38 ./usr/bin/show-snps -rwxr-xr-x root/root 91608 2018-06-11 06:38 ./usr/bin/show-tiling drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/lib/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/lib/mummer/ -rwxr-xr-x root/root 62936 2018-06-11 06:38 ./usr/lib/mummer/postnuc -rwxr-xr-x root/root 71128 2018-06-11 06:38 ./usr/lib/mummer/postpro -rwxr-xr-x root/root 13776 2018-06-11 06:38 ./usr/lib/mummer/prenuc -rwxr-xr-x root/root 21968 2018-06-11 06:38 ./usr/lib/mummer/prepro -rw-r--r-- root/root 760 2011-12-17 02:49 ./usr/lib/mummer/tandem-repeat.awk drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/doc/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/doc/mummer/ -rw-r--r-- root/root 327 2011-12-17 02:49 ./usr/share/doc/mummer/ACKNOWLEDGEMENTS -rw-r--r-- root/root 343 2018-06-11 06:38 ./usr/share/doc/mummer/NEWS.Debian.gz -rw-r--r-- root/root 207 2018-06-11 06:38 ./usr/share/doc/mummer/README.Debian -rw-r--r-- root/root 11466 2011-12-17 02:49 ./usr/share/doc/mummer/README.gz -rw-r--r-- root/root 3033 2018-06-11 06:38 ./usr/share/doc/mummer/changelog.Debian.gz -rw-r--r-- root/root 1456 2011-12-17 02:49 ./usr/share/doc/mummer/changelog.gz -rw-r--r-- root/root 1224 2018-06-11 06:38 ./usr/share/doc/mummer/copyright drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/doc/mummer/examples/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/ -rw-r--r-- root/root 1567 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mapview_0.fig.gz -rw-r--r-- root/root 32349 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mummer.mums.gz -rw-r--r-- root/root 42476 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mummer3.align.gz -rw-r--r-- root/root 10498 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mummer3.errorsgaps.gz -rw-r--r-- root/root 9795 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mummer3.gaps.gz -rw-r--r-- root/root 7663 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/mummer3.out.gz -rw-r--r-- root/root 1272 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/nucmer.coords.gz -rw-r--r-- root/root 2707 2018-06-11 06:38 ./usr/share/doc/mummer/examples/expected/nucmer.delta 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./usr/share/doc/mummer/examples/input/D_melanogaster_2Rslice.fasta.gz -rw-r--r-- root/root 1610 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/D_melanogaster_2Rslice.utr -rw-r--r-- root/root 13303 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/D_pseudoobscura_contigs.fasta.gz -rw-r--r-- root/root 21101 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/H_pylori26695_Bslice.fasta.gz -rw-r--r-- root/root 80705 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/H_pylori26695_Eslice.fasta.gz -rw-r--r-- root/root 21099 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/H_pyloriJ99_Bslice.fasta.gz -rw-r--r-- root/root 77762 2018-06-11 06:38 ./usr/share/doc/mummer/examples/input/H_pyloriJ99_Eslice.fasta.gz drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/man/ drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/man/man1/ lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/combineMUMs.1.gz -> mummer.1.gz -rw-r--r-- root/root 1241 2018-06-11 06:38 ./usr/share/man/man1/delta-filter.1.gz -rw-r--r-- root/root 720 2018-06-11 06:38 ./usr/share/man/man1/delta2blocks.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/delta2maf.1.gz -> delta2blocks.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/dnadiff.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/exact-tandems.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/gaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/mapview.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/mgaps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/mummer-annotate.1.gz -> mummer.1.gz -rw-r--r-- root/root 5669 2018-06-11 06:38 ./usr/share/man/man1/mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/mummerplot.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/nucmer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/nucmer2xfig.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/promer.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/repeat-match.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/run-mummer1.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/run-mummer3.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/show-aligns.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/show-coords.1.gz -> mummer.1.gz -rw-r--r-- root/root 910 2018-06-11 06:38 ./usr/share/man/man1/show-diff.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/show-snps.1.gz -> mummer.1.gz lrwxrwxrwx root/root 0 2018-06-11 06:38 ./usr/share/man/man1/show-tiling.1.gz -> mummer.1.gz drwxr-xr-x root/root 0 2018-06-11 06:38 ./usr/share/perl5/ -rw-r--r-- root/root 54266 2011-12-17 02:49 ./usr/share/perl5/Foundation.pm lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:amd64 Filtered Build-Depends: lintian:amd64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [560 B] Get:5 copy:/<>/apt_archive ./ Packages [650 B] Fetched 2173 B in 0s (117 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Some packages could not be installed. This may mean that you have requested an impossible situation or if you are using the unstable distribution that some required packages have not yet been created or been moved out of Incoming. The following information may help to resolve the situation: The following packages have unmet dependencies: sbuild-build-depends-lintian-dummy:armel : Depends: lintian:amd64 E: Unable to correct problems, you have held broken packages. apt-get failed. E: Package installation failed Not removing build depends: cloned chroot in use +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 35388 Build-Time: 60 Distribution: unstable Foreign Architectures: armel Host Architecture: armel Install-Time: 34 Job: mummer_3.23+dfsg-4 Lintian: error Machine Architecture: amd64 Package: mummer Package-Time: 107 Source-Version: 3.23+dfsg-4 Space: 35388 Status: successful Version: 3.23+dfsg-4 -------------------------------------------------------------------------------- Finished at 2019-10-06T17:04:37Z Build needed 00:01:47, 35388k disk space