sbuild (Debian sbuild) 0.78.1 (09 February 2019) on mjolnir +==============================================================================+ | muscle 1:5.1-1 (i386) Wed, 19 Jan 2022 03:20:18 +0000 | +==============================================================================+ Package: muscle Version: 1:5.1-1 Source Version: 1:5.1-1 Distribution: unstable Machine Architecture: arm64 Host Architecture: i386 Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/crossqa-sid-3b140c13-d931-4e1e-81e8-029fe08c56c5' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-YMdkZh/resolver-SsNacY' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://mirror.einval.org/debian sid InRelease [165 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:2 http://mirror.einval.org/debian sid/main Sources.diff/Index [63.6 kB] Ign:2 http://mirror.einval.org/debian sid/main Sources.diff/Index Ign:3 http://mirror.einval.org/debian sid/main arm64 Packages.diff/Index Get:4 http://mirror.einval.org/debian sid/main i386 Packages [8804 kB] Get:5 http://mirror.einval.org/debian sid/main Sources [9443 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 Packages [8750 kB] Fetched 27.2 MB in 7s (3810 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: libc-bin libc-dev-bin libc6 libc6-dev libgpg-error0 libsystemd0 libudev1 7 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 6042 kB of archives. After this operation, 9216 B of additional disk space will be used. Get:1 http://mirror.einval.org/debian sid/main arm64 libc6-dev arm64 2.33-3 [1942 kB] Get:2 http://mirror.einval.org/debian sid/main arm64 libc-dev-bin arm64 2.33-3 [242 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 libc6 arm64 2.33-3 [2476 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libc-bin arm64 2.33-3 [751 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libsystemd0 arm64 250.3-1 [381 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 libgpg-error0 arm64 1.43-3 [78.5 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 libudev1 arm64 250.3-1 [172 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 6042 kB in 0s (55.0 MB/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12348 files and directories currently installed.) Preparing to unpack .../libc6-dev_2.33-3_arm64.deb ... Unpacking libc6-dev:arm64 (2.33-3) over (2.33-2) ... Preparing to unpack .../libc-dev-bin_2.33-3_arm64.deb ... Unpacking libc-dev-bin (2.33-3) over (2.33-2) ... Preparing to unpack .../libc6_2.33-3_arm64.deb ... Unpacking libc6:arm64 (2.33-3) over (2.33-2) ... Setting up libc6:arm64 (2.33-3) ... (Reading database ... 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(Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 12348 files and directories currently installed.) Preparing to unpack .../libudev1_250.3-1_arm64.deb ... Unpacking libudev1:arm64 (250.3-1) over (250.2-3) ... Setting up libudev1:arm64 (250.3-1) ... Setting up libc-dev-bin (2.33-3) ... Setting up libc6-dev:arm64 (2.33-3) ... Processing triggers for libc-bin (2.33-3) ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'muscle' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/muscle.git Please use: git clone https://salsa.debian.org/med-team/muscle.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 195 kB of source archives. Get:1 http://mirror.einval.org/debian sid/main muscle 1:5.1-1 (dsc) [2006 B] Get:2 http://mirror.einval.org/debian sid/main muscle 1:5.1-1 (tar) [184 kB] Get:3 http://mirror.einval.org/debian sid/main muscle 1:5.1-1 (diff) [8712 B] Fetched 195 kB in 0s (6120 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/muscle-YMdkZh/muscle-5.1' with '<>' I: NOTICE: Log filtering will replace 'build/muscle-YMdkZh' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 Filtered Build-Depends: debhelper-compat (= 13), debhelper, libc-dev, libstdc++-dev, build-essential:arm64, fakeroot:arm64, crossbuild-essential-i386:arm64, libc-dev:i386, libstdc++-dev:i386 dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [405 B] Get:5 copy:/<>/apt_archive ./ Packages [495 B] Fetched 1857 B in 0s (43.1 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sensible-utils ucf Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-11-locales cpp-doc dh-make binutils-multiarch g++-11-multilib-i686-linux-gnu gcc-11-doc gcc-11-multilib-i686-linux-gnu manpages-dev flex bison gdb-i686-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff glibc-doc:i386 libc-l10n:i386 locales:i386 libnss-nis:i386 libnss-nisplus:i386 manpages-dev:i386 krb5-doc:i386 krb5-user:i386 libstdc++-11-doc:i386 libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx libidn2-0:i386 libarchive-cpio-perl krb5-locales:i386 libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev binutils-i686-linux-gnu bsdextrautils cpp-11-i686-linux-gnu cpp-i686-linux-gnu cross-config crossbuild-essential-i386 debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++-11-i686-linux-gnu g++-i686-linux-gnu gcc-11-base:i386 gcc-11-cross-base gcc-11-i686-linux-gnu gcc-11-i686-linux-gnu-base gcc-i686-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan6:i386 libasan6-i386-cross libatomic1:i386 libatomic1-i386-cross libc6:i386 libc6-dev:i386 libc6-dev-i386-cross libc6-i386-cross libcom-err2:i386 libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:i386 libcrypt1:i386 libdebhelper-perl libdebian-dpkgcross-perl libelf1 libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-11-dev:i386 libgcc-11-dev-i386-cross libgcc-s1:i386 libgcc-s1-i386-cross libgomp1:i386 libgomp1-i386-cross libgssapi-krb5-2:i386 libicu67 libio-string-perl libitm1:i386 libitm1-i386-cross libk5crypto3:i386 libkeyutils1:i386 libkrb5-3:i386 libkrb5support0:i386 liblocale-gettext-perl libmagic-mgc libmagic1 libnsl-dev:i386 libnsl2:i386 libpipeline1 libquadmath0:i386 libquadmath0-i386-cross libsigsegv2 libssl1.1:i386 libstdc++-11-dev:i386 libstdc++-11-dev-i386-cross libstdc++6:i386 libstdc++6-i386-cross libsub-override-perl libtirpc-dev:i386 libtirpc3:i386 libtool libubsan1:i386 libubsan1-i386-cross libuchardet0 libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:i386 linux-libc-dev-i386-cross m4 man-db po-debconf sbuild-build-depends-main-dummy:i386 sensible-utils ucf 0 upgraded, 98 newly installed, 0 to remove and 0 not upgraded. Need to get 84.8 MB of archives. After this operation, 327 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [920 B] Get:2 http://mirror.einval.org/debian sid/main arm64 liblocale-gettext-perl arm64 1.07-4+b1 [18.9 kB] Get:3 http://mirror.einval.org/debian sid/main arm64 sensible-utils all 0.0.17 [21.5 kB] Get:4 http://mirror.einval.org/debian sid/main arm64 libmagic-mgc arm64 1:5.41-2 [295 kB] Get:5 http://mirror.einval.org/debian sid/main arm64 libmagic1 arm64 1:5.41-2 [124 kB] Get:6 http://mirror.einval.org/debian sid/main arm64 file arm64 1:5.41-2 [66.8 kB] Get:7 http://mirror.einval.org/debian sid/main arm64 gettext-base arm64 0.21-4 [173 kB] Get:8 http://mirror.einval.org/debian sid/main arm64 libuchardet0 arm64 0.0.7-1 [67.9 kB] Get:9 http://mirror.einval.org/debian sid/main arm64 groff-base arm64 1.22.4-8 [882 kB] Get:10 http://mirror.einval.org/debian sid/main arm64 bsdextrautils arm64 2.37.2-6 [144 kB] Get:11 http://mirror.einval.org/debian sid/main arm64 libpipeline1 arm64 1.5.5-1 [35.8 kB] Get:12 http://mirror.einval.org/debian sid/main arm64 man-db arm64 2.9.4-4 [1336 kB] Get:13 http://mirror.einval.org/debian sid/main arm64 ucf all 3.0043 [74.0 kB] Get:14 http://mirror.einval.org/debian sid/main arm64 libsigsegv2 arm64 2.13-1 [34.7 kB] Get:15 http://mirror.einval.org/debian sid/main arm64 m4 arm64 1.4.18-5 [199 kB] Get:16 http://mirror.einval.org/debian sid/main arm64 autoconf all 2.71-2 [343 kB] Get:17 http://mirror.einval.org/debian sid/main arm64 autotools-dev all 20180224.1+nmu1 [77.1 kB] Get:18 http://mirror.einval.org/debian sid/main arm64 automake all 1:1.16.5-1.1 [823 kB] Get:19 http://mirror.einval.org/debian sid/main arm64 autopoint all 0.21-4 [510 kB] Get:20 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu-base arm64 11.2.0-9cross1 [205 kB] Get:21 http://mirror.einval.org/debian sid/main arm64 cpp-11-i686-linux-gnu arm64 11.2.0-9cross1 [7856 kB] Get:22 http://mirror.einval.org/debian sid/main arm64 cpp-i686-linux-gnu arm64 4:11.2.0-2 [17.0 kB] Get:23 http://mirror.einval.org/debian sid/main arm64 cross-config all 2.6.18+nmu2 [31.7 kB] Get:24 http://mirror.einval.org/debian sid/main arm64 binutils-i686-linux-gnu arm64 2.37.50.20220106-2 [2320 kB] Get:25 http://mirror.einval.org/debian sid/main arm64 gcc-11-cross-base all 11.2.0-9cross1 [201 kB] Get:26 http://mirror.einval.org/debian sid/main arm64 libc6-i386-cross all 2.33-1cross1 [1526 kB] Get:27 http://mirror.einval.org/debian sid/main arm64 libgcc-s1-i386-cross all 11.2.0-9cross1 [49.9 kB] Get:28 http://mirror.einval.org/debian sid/main arm64 libgomp1-i386-cross all 11.2.0-9cross1 [108 kB] Get:29 http://mirror.einval.org/debian sid/main arm64 libitm1-i386-cross all 11.2.0-9cross1 [27.3 kB] Get:30 http://mirror.einval.org/debian sid/main arm64 libatomic1-i386-cross all 11.2.0-9cross1 [7552 B] Get:31 http://mirror.einval.org/debian sid/main arm64 libasan6-i386-cross all 11.2.0-9cross1 [1927 kB] Get:32 http://mirror.einval.org/debian sid/main arm64 libstdc++6-i386-cross all 11.2.0-9cross1 [576 kB] Get:33 http://mirror.einval.org/debian sid/main arm64 libubsan1-i386-cross all 11.2.0-9cross1 [813 kB] Get:34 http://mirror.einval.org/debian sid/main arm64 libquadmath0-i386-cross all 11.2.0-9cross1 [226 kB] Get:35 http://mirror.einval.org/debian sid/main arm64 libgcc-11-dev-i386-cross all 11.2.0-9cross1 [2331 kB] Get:36 http://mirror.einval.org/debian sid/main arm64 gcc-11-i686-linux-gnu arm64 11.2.0-9cross1 [15.6 MB] Get:37 http://mirror.einval.org/debian sid/main arm64 gcc-i686-linux-gnu arm64 4:11.2.0-2 [1452 B] Get:38 http://mirror.einval.org/debian sid/main arm64 linux-libc-dev-i386-cross all 5.15.5-1cross1 [1576 kB] Get:39 http://mirror.einval.org/debian sid/main arm64 libc6-dev-i386-cross all 2.33-1cross1 [2170 kB] Get:40 http://mirror.einval.org/debian sid/main arm64 libstdc++-11-dev-i386-cross all 11.2.0-9cross1 [2002 kB] Get:41 http://mirror.einval.org/debian sid/main arm64 g++-11-i686-linux-gnu arm64 11.2.0-9cross1 [8672 kB] Get:42 http://mirror.einval.org/debian sid/main arm64 g++-i686-linux-gnu arm64 4:11.2.0-2 [1168 B] Get:43 http://mirror.einval.org/debian sid/main arm64 libconfig-inifiles-perl all 3.000003-1 [52.1 kB] Get:44 http://mirror.einval.org/debian sid/main arm64 libio-string-perl all 1.08-3.1 [11.8 kB] Get:45 http://mirror.einval.org/debian sid/main arm64 libicu67 arm64 67.1-7 [8467 kB] Get:46 http://mirror.einval.org/debian sid/main arm64 libxml2 arm64 2.9.12+dfsg-5+b1 [633 kB] Get:47 http://mirror.einval.org/debian sid/main arm64 libxml-namespacesupport-perl all 1.12-1.1 [14.9 kB] Get:48 http://mirror.einval.org/debian sid/main arm64 libxml-sax-base-perl all 1.09-1.1 [20.7 kB] Get:49 http://mirror.einval.org/debian sid/main arm64 libxml-sax-perl all 1.02+dfsg-3 [59.4 kB] Get:50 http://mirror.einval.org/debian sid/main arm64 libxml-libxml-perl arm64 2.0207+dfsg-2 [328 kB] Get:51 http://mirror.einval.org/debian sid/main arm64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:52 http://mirror.einval.org/debian sid/main arm64 libyaml-perl all 1.30-1 [67.7 kB] Get:53 http://mirror.einval.org/debian sid/main arm64 libconfig-auto-perl all 0.44-1.1 [19.0 kB] Get:54 http://mirror.einval.org/debian sid/main arm64 libfile-which-perl all 1.23-1 [16.6 kB] Get:55 http://mirror.einval.org/debian sid/main arm64 libfile-homedir-perl all 1.006-1 [43.8 kB] Get:56 http://mirror.einval.org/debian sid/main arm64 libdebian-dpkgcross-perl all 2.6.18+nmu2 [30.6 kB] Get:57 http://mirror.einval.org/debian sid/main arm64 dpkg-cross all 2.6.18+nmu2 [40.9 kB] Get:58 http://mirror.einval.org/debian sid/main arm64 crossbuild-essential-i386 all 12.9 [6704 B] Get:59 http://mirror.einval.org/debian sid/main arm64 libdebhelper-perl all 13.6 [193 kB] Get:60 http://mirror.einval.org/debian sid/main arm64 libtool all 2.4.6-15 [513 kB] Get:61 http://mirror.einval.org/debian sid/main arm64 dh-autoreconf all 20 [17.1 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libarchive-zip-perl all 1.68-1 [104 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 libsub-override-perl all 0.09-2 [10.2 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 libfile-stripnondeterminism-perl all 1.13.0-1 [26.6 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 dh-strip-nondeterminism all 1.13.0-1 [15.8 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 libelf1 arm64 0.186-1 [177 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 dwz arm64 0.14-1 [90.0 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 gettext arm64 0.21-4 [1261 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 po-debconf all 1.0.21+nmu1 [248 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 debhelper all 13.6 [1054 kB] Get:72 http://mirror.einval.org/debian sid/main i386 gcc-11-base i386 11.2.0-14 [207 kB] Get:73 http://mirror.einval.org/debian sid/main i386 libgcc-s1 i386 11.2.0-14 [49.8 kB] Get:74 http://mirror.einval.org/debian sid/main i386 libc6 i386 2.33-3 [2786 kB] Get:75 http://mirror.einval.org/debian sid/main i386 libasan6 i386 11.2.0-14 [1934 kB] Get:76 http://mirror.einval.org/debian sid/main i386 libatomic1 i386 11.2.0-14 [7720 B] Get:77 http://mirror.einval.org/debian sid/main i386 linux-libc-dev i386 5.15.5-2 [1457 kB] Get:78 http://mirror.einval.org/debian sid/main i386 libcrypt1 i386 1:4.4.27-1 [99.4 kB] Get:79 http://mirror.einval.org/debian sid/main i386 libcrypt-dev i386 1:4.4.27-1 [116 kB] Get:80 http://mirror.einval.org/debian sid/main i386 libcom-err2 i386 1.46.5-2 [76.1 kB] Get:81 http://mirror.einval.org/debian sid/main i386 libkrb5support0 i386 1.18.3-7 [68.6 kB] Get:82 http://mirror.einval.org/debian sid/main i386 libk5crypto3 i386 1.18.3-7 [117 kB] Get:83 http://mirror.einval.org/debian sid/main i386 libkeyutils1 i386 1.6.1-2 [15.9 kB] Get:84 http://mirror.einval.org/debian sid/main i386 libssl1.1 i386 1.1.1m-1 [1550 kB] Get:85 http://mirror.einval.org/debian sid/main i386 libkrb5-3 i386 1.18.3-7 [390 kB] Get:86 http://mirror.einval.org/debian sid/main i386 libgssapi-krb5-2 i386 1.18.3-7 [176 kB] Get:87 http://mirror.einval.org/debian sid/main i386 libtirpc3 i386 1.3.2-2 [91.3 kB] Get:88 http://mirror.einval.org/debian sid/main i386 libnsl2 i386 1.3.0-2 [42.2 kB] Get:89 http://mirror.einval.org/debian sid/main i386 libtirpc-dev i386 1.3.2-2 [201 kB] Get:90 http://mirror.einval.org/debian sid/main i386 libnsl-dev i386 1.3.0-2 [70.6 kB] Get:91 http://mirror.einval.org/debian sid/main i386 libc6-dev i386 2.33-3 [2172 kB] Get:92 http://mirror.einval.org/debian sid/main i386 libgomp1 i386 11.2.0-14 [111 kB] Get:93 http://mirror.einval.org/debian sid/main i386 libitm1 i386 11.2.0-14 [27.7 kB] Get:94 http://mirror.einval.org/debian sid/main i386 libstdc++6 i386 11.2.0-14 [617 kB] Get:95 http://mirror.einval.org/debian sid/main i386 libubsan1 i386 11.2.0-14 [813 kB] Get:96 http://mirror.einval.org/debian sid/main i386 libquadmath0 i386 11.2.0-14 [226 kB] Get:97 http://mirror.einval.org/debian sid/main i386 libgcc-11-dev i386 11.2.0-14 [2331 kB] Get:98 http://mirror.einval.org/debian sid/main i386 libstdc++-11-dev i386 11.2.0-14 [2028 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 84.8 MB in 1s (81.3 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12348 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-4+b1_arm64.deb ... Unpacking liblocale-gettext-perl (1.07-4+b1) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.17_all.deb ... Unpacking sensible-utils (0.0.17) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.41-2_arm64.deb ... Unpacking libmagic-mgc (1:5.41-2) ... Selecting previously unselected package libmagic1:arm64. Preparing to unpack .../03-libmagic1_1%3a5.41-2_arm64.deb ... Unpacking libmagic1:arm64 (1:5.41-2) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.41-2_arm64.deb ... Unpacking file (1:5.41-2) ... Selecting previously unselected package gettext-base. Preparing to unpack .../05-gettext-base_0.21-4_arm64.deb ... Unpacking gettext-base (0.21-4) ... 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Setting up gcc-11-i686-linux-gnu-base:arm64 (11.2.0-9cross1) ... Setting up libpipeline1:arm64 (1.5.5-1) ... Setting up gcc-11-base:i386 (11.2.0-14) ... Setting up libfile-which-perl (1.23-1) ... Setting up bsdextrautils (2.37.2-6) ... Setting up libicu67:arm64 (67.1-7) ... Setting up libmagic-mgc (1:5.41-2) ... Setting up cpp-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up binutils-i686-linux-gnu (2.37.50.20220106-2) ... Setting up libdebhelper-perl (13.6) ... Setting up libmagic1:arm64 (1:5.41-2) ... Setting up linux-libc-dev:i386 (5.15.5-2) ... Setting up libxml-namespacesupport-perl (1.12-1.1) ... Setting up gettext-base (0.21-4) ... Setting up file (1:5.41-2) ... Setting up libyaml-perl (1.30-1) ... Setting up libxml-sax-base-perl (1.09-1.1) ... Setting up libio-string-perl (1.08-3.1) ... Setting up linux-libc-dev-i386-cross (5.15.5-1cross1) ... Setting up autotools-dev (20180224.1+nmu1) ... Setting up cross-config (2.6.18+nmu2) ... Setting up libsigsegv2:arm64 (2.13-1) ... Setting up autopoint (0.21-4) ... Setting up gcc-11-cross-base (11.2.0-9cross1) ... Setting up sensible-utils (0.0.17) ... Setting up libuchardet0:arm64 (0.0.7-1) ... Setting up libc6-i386-cross (2.33-1cross1) ... Setting up libsub-override-perl (0.09-2) ... Setting up cpp-i686-linux-gnu (4:11.2.0-2) ... Setting up libfile-homedir-perl (1.006-1) ... Setting up libquadmath0-i386-cross (11.2.0-9cross1) ... Setting up libelf1:arm64 (0.186-1) ... Setting up libxml2:arm64 (2.9.12+dfsg-5+b1) ... Setting up liblocale-gettext-perl (1.07-4+b1) ... Setting up libfile-stripnondeterminism-perl (1.13.0-1) ... Setting up gettext (0.21-4) ... Setting up libtool (2.4.6-15) ... Setting up libatomic1-i386-cross (11.2.0-9cross1) ... Setting up m4 (1.4.18-5) ... Setting up libgomp1-i386-cross (11.2.0-9cross1) ... Setting up libc6-dev-i386-cross (2.33-1cross1) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up libgcc-s1-i386-cross (11.2.0-9cross1) ... Setting up libasan6-i386-cross (11.2.0-9cross1) ... Setting up libitm1-i386-cross (11.2.0-9cross1) ... Setting up ucf (3.0043) ... Setting up autoconf (2.71-2) ... Setting up dh-strip-nondeterminism (1.13.0-1) ... Setting up dwz (0.14-1) ... Setting up groff-base (1.22.4-8) ... Setting up automake (1:1.16.5-1.1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21+nmu1) ... Setting up man-db (2.9.4-4) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-3) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libstdc++6-i386-cross (11.2.0-9cross1) ... Setting up dh-autoreconf (20) ... Setting up libxml-libxml-perl (2.0207+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up debhelper (13.6) ... Setting up libubsan1-i386-cross (11.2.0-9cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libgcc-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libconfig-auto-perl (0.44-1.1) ... Setting up gcc-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up gcc-i686-linux-gnu (4:11.2.0-2) ... Setting up libstdc++-11-dev-i386-cross (11.2.0-9cross1) ... Setting up libdebian-dpkgcross-perl (2.6.18+nmu2) ... Setting up g++-11-i686-linux-gnu (11.2.0-9cross1) ... Setting up dpkg-cross (2.6.18+nmu2) ... Setting up g++-i686-linux-gnu (4:11.2.0-2) ... Setting up crossbuild-essential-i386 (12.9) ... Setting up libgcc-s1:i386 (11.2.0-14) ... Setting up libc6:i386 (2.33-3) ... Setting up libstdc++6:i386 (11.2.0-14) ... Setting up libitm1:i386 (11.2.0-14) ... Setting up libkeyutils1:i386 (1.6.1-2) ... Setting up libssl1.1:i386 (1.1.1m-1) ... Setting up libcrypt1:i386 (1:4.4.27-1) ... Setting up libcom-err2:i386 (1.46.5-2) ... Setting up libgomp1:i386 (11.2.0-14) ... Setting up libasan6:i386 (11.2.0-14) ... Setting up libkrb5support0:i386 (1.18.3-7) ... Setting up libquadmath0:i386 (11.2.0-14) ... Setting up libatomic1:i386 (11.2.0-14) ... Setting up libk5crypto3:i386 (1.18.3-7) ... Setting up libubsan1:i386 (11.2.0-14) ... Setting up libgcc-11-dev:i386 (11.2.0-14) ... Setting up libcrypt-dev:i386 (1:4.4.27-1) ... Setting up libkrb5-3:i386 (1.18.3-7) ... Setting up libgssapi-krb5-2:i386 (1.18.3-7) ... Setting up libtirpc3:i386 (1.3.2-2) ... Setting up libtirpc-dev:i386 (1.3.2-2) ... Setting up libnsl2:i386 (1.3.0-2) ... Setting up libnsl-dev:i386 (1.3.0-2) ... Setting up libc6-dev:i386 (2.33-3) ... Setting up libstdc++-11-dev:i386 (11.2.0-14) ... Setting up sbuild-build-depends-main-dummy:i386 (0.invalid.0) ... Processing triggers for libc-bin (2.33-3) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (i386 included in any) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 5.9.0-0.bpo.2-arm64 #1 SMP Debian 5.9.6-1~bpo10+1 (2020-11-19) arm64 (aarch64) Toolchain package versions: binutils_2.37.50.20220106-2 dpkg-dev_1.21.1 g++-11_11.2.0-14 gcc-11_11.2.0-14 libc6-dev_2.33-3 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-i386-cross_11.2.0-9cross1 linux-libc-dev_5.15.5-2 Package versions: adduser_3.118 apt_2.3.14 autoconf_2.71-2 automake_1:1.16.5-1.1 autopoint_0.21-4 autotools-dev_20180224.1+nmu1 base-files_12 base-passwd_3.5.52 bash_5.1-6 binutils_2.37.50.20220106-2 binutils-aarch64-linux-gnu_2.37.50.20220106-2 binutils-common_2.37.50.20220106-2 binutils-i686-linux-gnu_2.37.50.20220106-2 bsdextrautils_2.37.2-6 bsdutils_1:2.37.2-6 build-essential_12.9 bzip2_1.0.8-5 coreutils_8.32-4.1 cpp_4:11.2.0-2 cpp-11_11.2.0-14 cpp-11-i686-linux-gnu_11.2.0-9cross1 cpp-i686-linux-gnu_4:11.2.0-2 cross-config_2.6.18+nmu2 crossbuild-essential-i386_12.9 dash_0.5.11+git20210903+057cd650a4ed-3 debconf_1.5.79 debhelper_13.6 debian-archive-keyring_2021.1.1 debianutils_5.5-1 dh-autoreconf_20 dh-strip-nondeterminism_1.13.0-1 diffutils_1:3.7-5 dpkg_1.21.1 dpkg-cross_2.6.18+nmu2 dpkg-dev_1.21.1 dwz_0.14-1 fakeroot_1.27-1 file_1:5.41-2 findutils_4.8.0-1 g++_4:11.2.0-2 g++-11_11.2.0-14 g++-11-i686-linux-gnu_11.2.0-9cross1 g++-i686-linux-gnu_4:11.2.0-2 gcc_4:11.2.0-2 gcc-10-base_10.3.0-14 gcc-11_11.2.0-14 gcc-11-base_11.2.0-14 gcc-11-cross-base_11.2.0-9cross1 gcc-11-i686-linux-gnu_11.2.0-9cross1 gcc-11-i686-linux-gnu-base_11.2.0-9cross1 gcc-i686-linux-gnu_4:11.2.0-2 gettext_0.21-4 gettext-base_0.21-4 gpgv_2.2.27-3 grep_3.7-1 groff-base_1.22.4-8 gzip_1.10-4 hostname_3.23 init-system-helpers_1.61 intltool-debian_0.35.0+20060710.5 libacl1_2.3.1-1 libapt-pkg6.0_2.3.14 libarchive-zip-perl_1.68-1 libasan6_11.2.0-14 libasan6-i386-cross_11.2.0-9cross1 libatomic1_11.2.0-14 libatomic1-i386-cross_11.2.0-9cross1 libattr1_1:2.5.1-1 libaudit-common_1:3.0.6-1 libaudit1_1:3.0.6-1+b1 libbinutils_2.37.50.20220106-2 libblkid1_2.37.2-6 libbz2-1.0_1.0.8-5 libc-bin_2.33-3 libc-dev-bin_2.33-3 libc6_2.33-3 libc6-dev_2.33-3 libc6-dev-i386-cross_2.33-1cross1 libc6-i386-cross_2.33-1cross1 libcap-ng0_0.7.9-2.2+b1 libcap2_1:2.44-1 libcc1-0_11.2.0-14 libcom-err2_1.46.5-2 libconfig-auto-perl_0.44-1.1 libconfig-inifiles-perl_3.000003-1 libcrypt-dev_1:4.4.27-1 libcrypt1_1:4.4.27-1 libctf-nobfd0_2.37.50.20220106-2 libctf0_2.37.50.20220106-2 libdb5.3_5.3.28+dfsg1-0.8 libdebconfclient0_0.261 libdebhelper-perl_13.6 libdebian-dpkgcross-perl_2.6.18+nmu2 libdpkg-perl_1.21.1 libelf1_0.186-1 libfakeroot_1.27-1 libffi8_3.4.2-4 libfile-homedir-perl_1.006-1 libfile-stripnondeterminism-perl_1.13.0-1 libfile-which-perl_1.23-1 libgcc-11-dev_11.2.0-14 libgcc-11-dev-i386-cross_11.2.0-9cross1 libgcc-s1_11.2.0-14 libgcc-s1-i386-cross_11.2.0-9cross1 libgcrypt20_1.9.4-5 libgdbm-compat4_1.22-1 libgdbm6_1.22-1 libgmp10_2:6.2.1+dfsg-3 libgnutls30_3.7.2-5 libgomp1_11.2.0-14 libgomp1-i386-cross_11.2.0-9cross1 libgpg-error0_1.43-3 libgssapi-krb5-2_1.18.3-7 libhogweed6_3.7.3-1 libhwasan0_11.2.0-14 libicu67_67.1-7 libidn2-0_2.3.2-2 libio-string-perl_1.08-3.1 libisl23_0.24-2 libitm1_11.2.0-14 libitm1-i386-cross_11.2.0-9cross1 libk5crypto3_1.18.3-7 libkeyutils1_1.6.1-2 libkrb5-3_1.18.3-7 libkrb5support0_1.18.3-7 liblocale-gettext-perl_1.07-4+b1 liblsan0_11.2.0-14 liblz4-1_1.9.3-2 liblzma5_5.2.5-2 libmagic-mgc_1:5.41-2 libmagic1_1:5.41-2 libmount1_2.37.2-6 libmpc3_1.2.1-1 libmpfr6_4.1.0-3 libnettle8_3.7.3-1 libnsl-dev_1.3.0-2 libnsl2_1.3.0-2 libp11-kit0_0.24.0-6 libpam-modules_1.4.0-11 libpam-modules-bin_1.4.0-11 libpam-runtime_1.4.0-11 libpam0g_1.4.0-11 libpcre2-8-0_10.39-3 libpcre3_2:8.39-13 libperl5.32_5.32.1-6 libpipeline1_1.5.5-1 libquadmath0_11.2.0-14 libquadmath0-i386-cross_11.2.0-9cross1 libseccomp2_2.5.3-2 libselinux1_3.3-1+b1 libsemanage-common_3.3-1 libsemanage2_3.3-1+b1 libsepol2_3.3-1 libsigsegv2_2.13-1 libsmartcols1_2.37.2-6 libssl1.1_1.1.1m-1 libstdc++-11-dev_11.2.0-14 libstdc++-11-dev-i386-cross_11.2.0-9cross1 libstdc++6_11.2.0-14 libstdc++6-i386-cross_11.2.0-9cross1 libsub-override-perl_0.09-2 libsystemd0_250.3-1 libtasn1-6_4.18.0-4 libtinfo6_6.3-2 libtirpc-common_1.3.2-2 libtirpc-dev_1.3.2-2 libtirpc3_1.3.2-2 libtool_2.4.6-15 libtsan0_11.2.0-14 libubsan1_11.2.0-14 libubsan1-i386-cross_11.2.0-9cross1 libuchardet0_0.0.7-1 libudev1_250.3-1 libunistring2_0.9.10-6 libuuid1_2.37.2-6 libxml-libxml-perl_2.0207+dfsg-2 libxml-namespacesupport-perl_1.12-1.1 libxml-sax-base-perl_1.09-1.1 libxml-sax-perl_1.02+dfsg-3 libxml-simple-perl_2.25-1 libxml2_2.9.12+dfsg-5+b1 libxxhash0_0.8.1-1 libyaml-perl_1.30-1 libzstd1_1.4.8+dfsg-3 linux-libc-dev_5.15.5-2 linux-libc-dev-i386-cross_5.15.5-1cross1 login_1:4.8.1-2 lsb-base_11.1.0 m4_1.4.18-5 make_4.3-4.1 man-db_2.9.4-4 mawk_1.3.4.20200120-2 mount_2.37.2-6 ncurses-base_6.3-2 ncurses-bin_6.3-2 passwd_1:4.8.1-2 patch_2.7.6-7 perl_5.32.1-6 perl-base_5.32.1-6 perl-modules-5.32_5.32.1-6 po-debconf_1.0.21+nmu1 rpcsvc-proto_1.4.2-4 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.8-1 sensible-utils_0.0.17 sysvinit-utils_3.01-1 tar_1.34+dfsg-1 tzdata_2021e-1 ucf_3.0043 util-linux_2.37.2-6 xz-utils_5.2.5-2 zlib1g_1:1.2.11.dfsg-2 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: muscle Binary: muscle Architecture: any Version: 1:5.1-1 Maintainer: Debian Med Packaging Team Uploaders: Steffen Moeller , Charles Plessy , Andreas Tille Homepage: https://www.drive5.com/muscle/ Standards-Version: 4.6.0 Vcs-Browser: https://salsa.debian.org/med-team/muscle Vcs-Git: https://salsa.debian.org/med-team/muscle.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), debhelper Package-List: muscle deb science optional arch=any Checksums-Sha1: ed05f00fd212743dec7772588013c51a37b407ae 183891 muscle_5.1.orig.tar.gz 6753d6d72dcc2fad30c594610d05510d7b8eea3d 8712 muscle_5.1-1.debian.tar.xz Checksums-Sha256: 091d9f8733b92ff106c2a8eb274d1e5a57960d397a2068d8638d6002e8880dab 183891 muscle_5.1.orig.tar.gz 54254e9cc4cd446788c10bdf45bc1e5abf34ac0da283a832bea3074db005ae44 8712 muscle_5.1-1.debian.tar.xz Files: 99b5ef38a119994e7a8f0ea7a12b5987 183891 muscle_5.1.orig.tar.gz 09c5026e0dcb85b75d4b0d4c1fe8d5a9 8712 muscle_5.1-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJFBAEBCgAvFiEE8fAHMgoDVUHwpmPKV4oElNHGRtEFAmHlehYRHHRpbGxlQGRl 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F1F007320A035541F0A663CA578A0494D1C646D1 gpgv: issuer "tille@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: cannot verify signature ./muscle_5.1-1.dsc dpkg-source: info: extracting muscle in /<> dpkg-source: info: unpacking muscle_5.1.orig.tar.gz dpkg-source: info: unpacking muscle_5.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying makefile.patch Check disk space ---------------- Sufficient free space for build +------------------------------------------------------------------------------+ | Starting Timed Build Commands | +------------------------------------------------------------------------------+ ulimit -c --------- 0 I: Finished running 'ulimit -c'. Finished processing commands. -------------------------------------------------------------------------------- User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.i386 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_GB.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmutg PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=crossqa-sid SCHROOT_CHROOT_NAME=crossqa-sid SCHROOT_COMMAND=env SCHROOT_GID=1002 SCHROOT_GROUP=helmutg SCHROOT_SESSION_ID=crossqa-sid-3b140c13-d931-4e1e-81e8-029fe08c56c5 SCHROOT_UID=1002 SCHROOT_USER=helmutg SHELL=/bin/sh USER=helmutg dpkg-buildpackage ----------------- Command: dpkg-buildpackage -ai386 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package muscle dpkg-buildpackage: info: source version 1:5.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Andreas Tille dpkg-architecture: warning: specified GNU system type i686-linux-gnu does not match CC system type aarch64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture i386 debian/rules clean dh clean --sourcedirectory=src dh_auto_clean -O--sourcedirectory=src cd src && make -j1 clean make[1]: Entering directory '/<>/src' rm -rf gitver.txt Linux/ make[1]: Leaving directory '/<>/src' dh_autoreconf_clean -O--sourcedirectory=src dh_clean -O--sourcedirectory=src debian/rules binary-arch dh binary-arch --sourcedirectory=src dh_update_autotools_config -a -O--sourcedirectory=src dh_autoreconf -a -O--sourcedirectory=src dh_auto_configure -a -O--sourcedirectory=src debian/rules override_dh_auto_build make[1]: Entering directory '/<>' dh_auto_build -- 'GPP=$(CXX)' cd src && make -j1 "INSTALL=install --strip-program=true" PKG_CONFIG=i686-linux-gnu-pkg-config CXX=i686-linux-gnu-g\+\+ CC=i686-linux-gnu-gcc GPP=\$\(CXX\) make[2]: Entering directory '/<>/src' bash ./gitver.bash ./gitver.bash: line 5: git: command not found "" mkdir -p Linux/ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/addconfseq.o addconfseq.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/align.o align.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alignpairflat.o alignpairflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/allocflat.o allocflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnalnsflat.o alnalnsflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat.o alnmsasflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alnmsasflat3.o alnmsasflat3.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha.o alpha.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/alpha3.o alpha3.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/assertsameseqs.o assertsameseqs.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildposterior3flat.o buildposterior3flat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/buildpostflat.o buildpostflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/bwdflat3.o bwdflat3.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnflat.o calcalnflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoreflat.o calcalnscoreflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcalnscoresparse.o calcalnscoresparse.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/calcposteriorflat.o calcposteriorflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/colscoreefa.o colscoreefa.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/consflat.o consflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/conspairflat.o conspairflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/defaulthmmparams.o defaulthmmparams.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/derep.o derep.cpp derep.cpp: In member function ‘uint Derep::CalcHash(const Sequence*) const’: derep.cpp:15:19: warning: conversion from ‘long long unsigned int’ to ‘uint64’ {aka ‘long unsigned int’} changes value from ‘14695981039346656037’ to ‘2216829733’ [-Woverflow] 15 | uint64 hash = 0xcbf29ce484222325uL; | ^~~~~~~~~~~~~~~~~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/diagbox.o diagbox.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/disperse.o disperse.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/dividetree.o dividetree.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eacluster.o eacluster.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmx.o eadistmx.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eadistmxmsas.o eadistmxmsas.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/eesort.o eesort.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestcols.o efabestcols.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efabestconf.o efabestconf.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efaexplode.o efaexplode.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/efastats.o efastats.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/ensemble.o ensemble.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fa2efa.o fa2efa.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta.o fasta.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fasta2.o fasta2.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/fwdflat3.o fwdflat3.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getconsseq.o getconsseq.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpairs.o getpairs.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/getpostpairsalignedflat.o getpostpairsalignedflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/globalinputms.o globalinputms.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/guidetreejoinorder.o guidetreejoinorder.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/heatmapcolors.o heatmapcolors.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/help.o help.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmdump.o hmmdump.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/hmmparams.o hmmparams.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jalview.o jalview.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/jointrees.o jointrees.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconf.o letterconf.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/letterconfhtml.o letterconfhtml.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logaln.o logaln.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logdistmx.o logdistmx.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/logmx.o logmx.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/main.o main.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/make_a2m.o make_a2m.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/maxcc.o maxcc.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mpcflat.o mpcflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa.o msa.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msa2.o msa2.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/msastats.o msastats.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/multisequence.o multisequence.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/mysparsemx.o mysparsemx.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/myutils.o myutils.cpp myutils.cpp:1626:31: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:1626:41: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 1626 | Log(" built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2091:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2091 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2091:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2091 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2114:37: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time] 2114 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp:2114:47: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time] 2114 | fprintf(f, "Built %s %s\n", __DATE__, __TIME__); | ^~~~~~~~ myutils.cpp: In function ‘void IncrementRand()’: myutils.cpp:2267:32: warning: right shift count >= width of type [-Wshift-count-overflow] 2267 | g_X[4] = (uint32) (Sum >> 32); | ~~~~^~~~~ i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pairhmm.o pairhmm.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/permutetree.o permutetree.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/perturbhmm.o perturbhmm.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog.o pprog.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprog2.o pprog2.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/pprogt.o pprogt.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/probcons.o probcons.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/progalnflat.o progalnflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/project.o project.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore.o qscore.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscore2.o qscore2.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscoreefa.o qscoreefa.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/qscorer.o qscorer.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/quarts.o quarts.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/randomchaintree.o randomchaintree.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/refineflat.o refineflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relabel.o relabel.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/relaxflat.o relaxflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/resample.o resample.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seb8.o seb8.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/seq.o seq.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/sequence.o sequence.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/setprobconsparams.o setprobconsparams.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappycols.o stripgappycols.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/stripgappyrows.o stripgappyrows.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super4.o super4.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/super5.o super5.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testfb.o testfb.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testlog.o testlog.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/testscoretype.o testscoretype.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/textfile.o textfile.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/totalprobflat.o totalprobflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tracebackflat.o tracebackflat.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transaln.o transaln.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/transq.o transq.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree.o tree.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree2.o tree2.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/tree4.o tree4.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treefromfile.o treefromfile.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treeperm.o treeperm.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesplitter.o treesplitter.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treesubsetnodes.o treesubsetnodes.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/treetofile.o treetofile.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtoref.o trimtoref.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/trimtorefefa.o trimtorefefa.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/uclust.o uclust.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/upgma5.o upgma5.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usage.o usage.cpp i686-linux-gnu-g++ -Wdate-time -D_FORTIFY_SOURCE=2 -DNDEBUG -pthread -g -O2 -ffile-prefix-map=/<>=. -fstack-protector-strong -Wformat -Werror=format-security -O3 -fopenmp -ffast-math -c -o Linux/usorter.o usorter.cpp i686-linux-gnu-g++ -Wl,-z,relro -Wl,-z,now -O3 -fopenmp -pthread -lpthread Linux/addconfseq.o Linux/align.o Linux/alignpairflat.o Linux/allocflat.o Linux/alnalnsflat.o Linux/alnmsasflat.o Linux/alnmsasflat3.o Linux/alpha.o Linux/alpha3.o Linux/assertsameseqs.o Linux/buildposterior3flat.o Linux/buildpostflat.o Linux/bwdflat3.o Linux/calcalnflat.o Linux/calcalnscoreflat.o Linux/calcalnscoresparse.o Linux/calcposteriorflat.o Linux/colscoreefa.o Linux/consflat.o Linux/conspairflat.o Linux/defaulthmmparams.o Linux/derep.o Linux/diagbox.o Linux/disperse.o Linux/dividetree.o Linux/eacluster.o Linux/eadistmx.o Linux/eadistmxmsas.o Linux/eesort.o Linux/efabestcols.o Linux/efabestconf.o Linux/efaexplode.o Linux/efastats.o Linux/ensemble.o Linux/fa2efa.o Linux/fasta.o Linux/fasta2.o Linux/fwdflat3.o Linux/getconsseq.o Linux/getpairs.o Linux/getpostpairsalignedflat.o Linux/globalinputms.o Linux/guidetreejoinorder.o Linux/heatmapcolors.o Linux/help.o Linux/hmmdump.o Linux/hmmparams.o Linux/jalview.o Linux/jointrees.o Linux/letterconf.o Linux/letterconfhtml.o Linux/logaln.o Linux/logdistmx.o Linux/logmx.o Linux/main.o Linux/make_a2m.o Linux/maxcc.o Linux/mpcflat.o Linux/msa.o Linux/msa2.o Linux/msastats.o Linux/multisequence.o Linux/mysparsemx.o Linux/myutils.o Linux/pairhmm.o Linux/permutetree.o Linux/perturbhmm.o Linux/pprog.o Linux/pprog2.o Linux/pprogt.o Linux/probcons.o Linux/progalnflat.o Linux/project.o Linux/qscore.o Linux/qscore2.o Linux/qscoreefa.o Linux/qscorer.o Linux/quarts.o Linux/randomchaintree.o Linux/refineflat.o Linux/relabel.o Linux/relaxflat.o Linux/resample.o Linux/seb8.o Linux/seq.o Linux/sequence.o Linux/setprobconsparams.o Linux/stripgappycols.o Linux/stripgappyrows.o Linux/super4.o Linux/super5.o Linux/testfb.o Linux/testlog.o Linux/testscoretype.o Linux/textfile.o Linux/totalprobflat.o Linux/tracebackflat.o Linux/transaln.o Linux/transq.o Linux/tree.o Linux/tree2.o Linux/tree4.o Linux/treefromfile.o Linux/treeperm.o Linux/treesplitter.o Linux/treesubsetnodes.o Linux/treetofile.o Linux/trimtoref.o Linux/trimtorefefa.o Linux/uclust.o Linux/upgma5.o Linux/usage.o Linux/usorter.o -o Linux/muscle # Warning: do not add -d option to strip, this is not portable #strip Linux/muscle make[2]: Leaving directory '/<>/src' make[1]: Leaving directory '/<>' dh: command-omitted: The call to "dh_auto_test -a -O--sourcedirectory=src" was omitted due to "DEB_BUILD_OPTIONS=nocheck" create-stamp debian/debhelper-build-stamp dh_testroot -a -O--sourcedirectory=src dh_prep -a -O--sourcedirectory=src dh_auto_install --destdir=debian/muscle/ -a -O--sourcedirectory=src dh_install -a -O--sourcedirectory=src dh_installdocs -a -O--sourcedirectory=src dh_installchangelogs -a -O--sourcedirectory=src dh_installexamples -a -O--sourcedirectory=src dh_installman -a -O--sourcedirectory=src dh_installsystemduser -a -O--sourcedirectory=src dh_perl -a -O--sourcedirectory=src dh_link -a -O--sourcedirectory=src dh_strip_nondeterminism -a -O--sourcedirectory=src dh_compress -a -O--sourcedirectory=src dh_fixperms -a -O--sourcedirectory=src dh_missing -a -O--sourcedirectory=src dh_dwz -a -O--sourcedirectory=src dh_strip -a -O--sourcedirectory=src dh_makeshlibs -a -O--sourcedirectory=src dh_shlibdeps -a -O--sourcedirectory=src dh_installdeb -a -O--sourcedirectory=src dh_gencontrol -a -O--sourcedirectory=src dh_md5sums -a -O--sourcedirectory=src dh_builddeb -a -O--sourcedirectory=src dpkg-deb: building package 'muscle' in '../muscle_5.1-1_i386.deb'. dpkg-deb: building package 'muscle-dbgsym' in '../muscle-dbgsym_5.1-1_i386.deb'. dpkg-genbuildinfo --build=any -O../muscle_5.1-1_i386.buildinfo dpkg-genchanges --build=any -O../muscle_5.1-1_i386.changes dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included) dpkg-source --after-build . dpkg-buildpackage: info: binary-only upload (no source included) -------------------------------------------------------------------------------- Build finished at 2022-01-19T03:32:13Z Finished -------- I: Built successfully +------------------------------------------------------------------------------+ | Changes | +------------------------------------------------------------------------------+ muscle_5.1-1_i386.changes: -------------------------- Format: 1.8 Date: Mon, 17 Jan 2022 15:13:06 +0100 Source: muscle Binary: muscle muscle-dbgsym Built-For-Profiles: cross nocheck Architecture: i386 Version: 1:5.1-1 Distribution: unstable Urgency: medium Maintainer: Debian Med Packaging Team Changed-By: Andreas Tille Description: muscle - Multiple alignment program of protein sequences Changes: muscle (1:5.1-1) unstable; urgency=medium . * Muscle moved to Github and issued a rewritten release * New upstream version * Standards-Version: 4.6.0 (routine-update) * debhelper-compat 13 (routine-update) * Add salsa-ci file (routine-update) * Rules-Requires-Root: no (routine-update) * Use secure URI in Homepage field. * Add missing build dependency on dh addon. * Set upstream metadata fields: Bug-Database, Bug-Submit, Repository, Repository-Browse. * Fix day-of-week for changelog entry 3.52-1. * d/copyright: Fix source location * d/rules: New source directory * Do not provide outdated documentation * No static linking * New help2man based manpage * Add NEWS to inform users about changed command line options * Make long description more verbose about new version Checksums-Sha1: 5bbdc20f8bcd74a2be9dcca9b67822709a08e02f 5473080 muscle-dbgsym_5.1-1_i386.deb 91fcaba854b57cec3c76788e49517c17776f178f 4858 muscle_5.1-1_i386.buildinfo 25135c5759971303f1e0252240b702d38233aaf1 310824 muscle_5.1-1_i386.deb Checksums-Sha256: 55cf7105919e979c682e383caf48aeab860475d67f6966b9366a9379475f61d8 5473080 muscle-dbgsym_5.1-1_i386.deb f9ccc9026def9edfa269dfe7f9f25958cd502a28fdf3e3445a3b550c31fea5f7 4858 muscle_5.1-1_i386.buildinfo 62e30dd45e7391b9f06370766e38e26984590f17279e639866e31b6a904326ea 310824 muscle_5.1-1_i386.deb Files: f7fb9885d5bf36b2ffdae329407e7cb8 5473080 debug optional muscle-dbgsym_5.1-1_i386.deb 654802b50e68278bc09dc5d21559bf94 4858 science optional muscle_5.1-1_i386.buildinfo 5a9311e700bb740294c7122f256a5d44 310824 science optional muscle_5.1-1_i386.deb +------------------------------------------------------------------------------+ | Buildinfo | +------------------------------------------------------------------------------+ Format: 1.0 Source: muscle Binary: muscle muscle-dbgsym Architecture: i386 Version: 1:5.1-1 Checksums-Md5: f7fb9885d5bf36b2ffdae329407e7cb8 5473080 muscle-dbgsym_5.1-1_i386.deb 5a9311e700bb740294c7122f256a5d44 310824 muscle_5.1-1_i386.deb Checksums-Sha1: 5bbdc20f8bcd74a2be9dcca9b67822709a08e02f 5473080 muscle-dbgsym_5.1-1_i386.deb 25135c5759971303f1e0252240b702d38233aaf1 310824 muscle_5.1-1_i386.deb Checksums-Sha256: 55cf7105919e979c682e383caf48aeab860475d67f6966b9366a9379475f61d8 5473080 muscle-dbgsym_5.1-1_i386.deb 62e30dd45e7391b9f06370766e38e26984590f17279e639866e31b6a904326ea 310824 muscle_5.1-1_i386.deb Build-Origin: Debian Build-Architecture: arm64 Build-Date: Wed, 19 Jan 2022 03:32:12 +0000 Build-Path: /<> Installed-Build-Depends: autoconf (= 2.71-2), automake (= 1:1.16.5-1.1), autopoint (= 0.21-4), autotools-dev (= 20180224.1+nmu1), base-files (= 12), base-passwd (= 3.5.52), bash (= 5.1-6), binutils (= 2.37.50.20220106-2), binutils-aarch64-linux-gnu (= 2.37.50.20220106-2), binutils-common (= 2.37.50.20220106-2), bsdextrautils (= 2.37.2-6), bsdutils (= 1:2.37.2-6), build-essential (= 12.9), bzip2 (= 1.0.8-5), coreutils (= 8.32-4.1), cpp (= 4:11.2.0-2), cpp-11 (= 11.2.0-14), dash (= 0.5.11+git20210903+057cd650a4ed-3), debconf (= 1.5.79), debhelper (= 13.6), debianutils (= 5.5-1), dh-autoreconf (= 20), dh-strip-nondeterminism (= 1.13.0-1), diffutils (= 1:3.7-5), dpkg (= 1.21.1), dpkg-dev (= 1.21.1), dwz (= 0.14-1), file (= 1:5.41-2), findutils (= 4.8.0-1), g++ (= 4:11.2.0-2), g++-11 (= 11.2.0-14), gcc (= 4:11.2.0-2), gcc-11 (= 11.2.0-14), gcc-11-base (= 11.2.0-14), gettext (= 0.21-4), gettext-base (= 0.21-4), grep (= 3.7-1), groff-base (= 1.22.4-8), gzip (= 1.10-4), hostname (= 3.23), init-system-helpers (= 1.61), intltool-debian (= 0.35.0+20060710.5), libacl1 (= 2.3.1-1), libarchive-zip-perl (= 1.68-1), libasan6 (= 11.2.0-14), libatomic1 (= 11.2.0-14), libattr1 (= 1:2.5.1-1), libaudit-common (= 1:3.0.6-1), libaudit1 (= 1:3.0.6-1+b1), libbinutils (= 2.37.50.20220106-2), libblkid1 (= 2.37.2-6), libbz2-1.0 (= 1.0.8-5), libc-bin (= 2.33-3), libc-dev-bin (= 2.33-3), libc6 (= 2.33-3), libc6-dev (= 2.33-3), libcap-ng0 (= 0.7.9-2.2+b1), libcap2 (= 1:2.44-1), libcc1-0 (= 11.2.0-14), libcom-err2 (= 1.46.5-2), libcrypt-dev (= 1:4.4.27-1), libcrypt1 (= 1:4.4.27-1), libctf-nobfd0 (= 2.37.50.20220106-2), libctf0 (= 2.37.50.20220106-2), libdb5.3 (= 5.3.28+dfsg1-0.8), libdebconfclient0 (= 0.261), libdebhelper-perl (= 13.6), libdpkg-perl (= 1.21.1), libelf1 (= 0.186-1), libfile-stripnondeterminism-perl (= 1.13.0-1), libgcc-11-dev (= 11.2.0-14), libgcc-s1 (= 11.2.0-14), libgcrypt20 (= 1.9.4-5), libgdbm-compat4 (= 1.22-1), libgdbm6 (= 1.22-1), libgmp10 (= 2:6.2.1+dfsg-3), libgomp1 (= 11.2.0-14), libgpg-error0 (= 1.43-3), libgssapi-krb5-2 (= 1.18.3-7), libhwasan0 (= 11.2.0-14), libicu67 (= 67.1-7), libisl23 (= 0.24-2), libitm1 (= 11.2.0-14), libk5crypto3 (= 1.18.3-7), libkeyutils1 (= 1.6.1-2), libkrb5-3 (= 1.18.3-7), libkrb5support0 (= 1.18.3-7), liblsan0 (= 11.2.0-14), liblz4-1 (= 1.9.3-2), liblzma5 (= 5.2.5-2), libmagic-mgc (= 1:5.41-2), libmagic1 (= 1:5.41-2), libmount1 (= 2.37.2-6), libmpc3 (= 1.2.1-1), libmpfr6 (= 4.1.0-3), libnsl-dev (= 1.3.0-2), libnsl2 (= 1.3.0-2), libpam-modules (= 1.4.0-11), libpam-modules-bin (= 1.4.0-11), libpam-runtime (= 1.4.0-11), libpam0g (= 1.4.0-11), libpcre2-8-0 (= 10.39-3), libpcre3 (= 2:8.39-13), libperl5.32 (= 5.32.1-6), libpipeline1 (= 1.5.5-1), libseccomp2 (= 2.5.3-2), libselinux1 (= 3.3-1+b1), libsigsegv2 (= 2.13-1), libsmartcols1 (= 2.37.2-6), libssl1.1 (= 1.1.1m-1), libstdc++-11-dev (= 11.2.0-14), libstdc++6 (= 11.2.0-14), libsub-override-perl (= 0.09-2), libsystemd0 (= 250.3-1), libtinfo6 (= 6.3-2), libtirpc-common (= 1.3.2-2), libtirpc-dev (= 1.3.2-2), libtirpc3 (= 1.3.2-2), libtool (= 2.4.6-15), libtsan0 (= 11.2.0-14), libubsan1 (= 11.2.0-14), libuchardet0 (= 0.0.7-1), libudev1 (= 250.3-1), libunistring2 (= 0.9.10-6), libuuid1 (= 2.37.2-6), libxml2 (= 2.9.12+dfsg-5+b1), libzstd1 (= 1.4.8+dfsg-3), linux-libc-dev (= 5.15.5-2), login (= 1:4.8.1-2), lsb-base (= 11.1.0), m4 (= 1.4.18-5), make (= 4.3-4.1), man-db (= 2.9.4-4), mawk (= 1.3.4.20200120-2), ncurses-base (= 6.3-2), ncurses-bin (= 6.3-2), patch (= 2.7.6-7), perl (= 5.32.1-6), perl-base (= 5.32.1-6), perl-modules-5.32 (= 5.32.1-6), po-debconf (= 1.0.21+nmu1), rpcsvc-proto (= 1.4.2-4), sed (= 4.8-1), sensible-utils (= 0.0.17), sysvinit-utils (= 3.01-1), tar (= 1.34+dfsg-1), util-linux (= 2.37.2-6), xz-utils (= 5.2.5-2), zlib1g (= 1:1.2.11.dfsg-2) Environment: DEB_BUILD_OPTIONS="nocheck parallel=1" DEB_BUILD_PROFILES="cross nocheck" LANG="en_GB.UTF-8" LC_ALL="C.UTF-8" SOURCE_DATE_EPOCH="1642428786" +------------------------------------------------------------------------------+ | Package contents | +------------------------------------------------------------------------------+ muscle-dbgsym_5.1-1_i386.deb ---------------------------- new Debian package, version 2.0. size 5473080 bytes: control archive=532 bytes. 366 bytes, 12 lines control 106 bytes, 1 lines md5sums Package: muscle-dbgsym Source: muscle Version: 1:5.1-1 Auto-Built-Package: debug-symbols Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 5485 Depends: muscle (= 1:5.1-1) Section: debug Priority: optional Description: debug symbols for muscle Build-Ids: 8740fc7ad70246bb8d250a1822b912e04d2780bd drwxr-xr-x root/root 0 2022-01-17 14:13 ./ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/lib/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/lib/debug/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/lib/debug/.build-id/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/lib/debug/.build-id/87/ -rw-r--r-- root/root 5605704 2022-01-17 14:13 ./usr/lib/debug/.build-id/87/40fc7ad70246bb8d250a1822b912e04d2780bd.debug drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/doc/ lrwxrwxrwx root/root 0 2022-01-17 14:13 ./usr/share/doc/muscle-dbgsym -> muscle muscle_5.1-1_i386.deb --------------------- new Debian package, version 2.0. size 310824 bytes: control archive=1452 bytes. 1889 bytes, 42 lines control 399 bytes, 6 lines md5sums Package: muscle Version: 1:5.1-1 Architecture: i386 Maintainer: Debian Med Packaging Team Installed-Size: 911 Depends: libc6 (>= 2.33), libgcc-s1 (>= 3.0), libgomp1 (>= 4.9), libstdc++6 (>= 11) Enhances: seaview, t-coffee Conflicts: muscle-doc Replaces: muscle-doc Provides: muscle-doc Section: science Priority: optional Homepage: https://www.drive5.com/muscle/ Description: Multiple alignment program of protein sequences MUSCLE is a multiple alignment program for protein sequences. MUSCLE stands for multiple sequence comparison by log-expectation. In the authors tests, MUSCLE achieved the highest scores of all tested programs on several alignment accuracy benchmarks, and is also one of the fastest programs out there. . Muscle v5 is a major re-write of MUSCLE based on new algorithms. . Users should be aware that command line arguments compared to version 3.x of MUSCLE have changed! . Highest accuracy, scalable to thousands of sequences . Compared to previous versions, Muscle v5 is much more accurate, is often faster, and scales to much larger datasets. At the time of writing (late 2021), Muscle v5 has the highest scores on multiple alignment benchmarks including Balibase, Bralibase, Prefab and Balifam. It can align tens of thousands of sequences with high accuracy on a low-cost commodity computer (say, an 8-core Intel CPU with 32 Gb RAM). On large datasets, Muscle v5 is 20-30% more accurate than MAFFT and Clustal-Omega. . Alignment ensembles . Muscle v5 can generate ensembles of high-accuracy alternative alignments. All replicates have equal average accuracy on benchmark test, including the MSA made with default parameters. By comparing results of downstream analysis (trees, structure prediction...) on different replicates, you can assess the effects of alignment errors on your study. drwxr-xr-x root/root 0 2022-01-17 14:13 ./ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/bin/ -rwxr-xr-x root/root 912056 2022-01-17 14:13 ./usr/bin/muscle drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/doc/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/doc/muscle/ -rw-r--r-- root/root 717 2022-01-17 14:13 ./usr/share/doc/muscle/NEWS.Debian.gz -rw-r--r-- root/root 2522 2022-01-17 14:13 ./usr/share/doc/muscle/changelog.Debian.gz -rw-r--r-- root/root 959 2022-01-17 14:13 ./usr/share/doc/muscle/copyright drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/doc/muscle/examples/ -rw-r--r-- root/root 2269 2022-01-17 14:13 ./usr/share/doc/muscle/examples/example.fa drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/man/ drwxr-xr-x root/root 0 2022-01-17 14:13 ./usr/share/man/man1/ -rw-r--r-- root/root 1480 2022-01-17 14:13 ./usr/share/man/man1/muscle.1.gz lintian ------- Setup apt archive ----------------- Merged Build-Depends: lintian:arm64 Filtered Build-Depends: lintian:arm64 dpkg-deb: building package 'sbuild-build-depends-lintian-dummy' in '/<>/apt_archive/sbuild-build-depends-lintian-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [963 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [536 B] Get:5 copy:/<>/apt_archive ./ Packages [621 B] Fetched 2120 B in 0s (48.3 kB/s) Reading package lists... Reading package lists... Install lintian build dependencies (apt-based resolver) ------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common t1utils unzip Suggested packages: libxml-parser-perl libscalar-number-perl libbareword-filehandles-perl libindirect-perl libmultidimensional-perl libbusiness-isbn-perl libwww-perl binutils-multiarch libtext-template-perl readline-doc zip Recommended packages: gnupg liblist-someutils-xs-perl libmath-base85-perl libsocket6-perl libpackage-stash-xs-perl The following NEW packages will be installed: diffstat gpg gpgconf libaliased-perl libapt-pkg-perl libassuan0 libb-hooks-endofscope-perl libb-hooks-op-check-perl libcapture-tiny-perl libclass-data-inheritable-perl libclass-method-modifiers-perl libclass-xsaccessor-perl libclone-perl libconfig-tiny-perl libconst-fast-perl libcpanel-json-xs-perl libdata-dpath-perl libdata-messagepack-perl libdata-optlist-perl libdata-validate-domain-perl libdata-validate-ip-perl libdata-validate-uri-perl libdevel-callchecker-perl libdevel-size-perl libdevel-stacktrace-perl libdynaloader-functions-perl libemail-address-xs-perl libexception-class-perl libexporter-tiny-perl libfile-basedir-perl libfile-find-rule-perl libfont-ttf-perl libhtml-html5-entities-perl libimport-into-perl libio-interactive-perl libio-prompt-tiny-perl libipc-run3-perl libipc-system-simple-perl libiterator-perl libiterator-util-perl libjson-maybexs-perl liblist-compare-perl liblist-moreutils-perl liblist-moreutils-xs-perl liblist-someutils-perl liblist-utilsby-perl liblzo2-2 libmarkdown2 libmodule-implementation-perl libmodule-runtime-perl libmoo-perl libmoox-aliases-perl libmouse-perl libnamespace-clean-perl libnet-domain-tld-perl libnet-ipv6addr-perl libnet-netmask-perl libnetaddr-ip-perl libnumber-compare-perl libpackage-stash-perl libparams-classify-perl libparams-util-perl libpath-tiny-perl libperlio-gzip-perl libperlio-utf8-strict-perl libproc-processtable-perl libreadline8 librole-tiny-perl libsereal-decoder-perl libsereal-encoder-perl libsort-versions-perl libsqlite3-0 libstrictures-perl libsub-exporter-perl libsub-exporter-progressive-perl libsub-identify-perl libsub-install-perl libsub-name-perl libsub-quote-perl libsyntax-keyword-try-perl libterm-readkey-perl libtext-glob-perl libtext-levenshteinxs-perl libtext-markdown-discount-perl libtext-xslate-perl libtime-duration-perl libtime-moment-perl libtimedate-perl libtry-tiny-perl libunicode-utf8-perl liburi-perl libvariable-magic-perl libxs-parse-keyword-perl libyaml-0-2 libyaml-libyaml-perl lintian lzip lzop patchutils readline-common sbuild-build-depends-lintian-dummy:i386 t1utils unzip 0 upgraded, 103 newly installed, 0 to remove and 0 not upgraded. Need to get 7633 kB of archives. After this operation, 22.9 MB of additional disk space will be used. 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0.048-2 [34.2 kB] Get:62 http://mirror.einval.org/debian sid/main arm64 libjson-maybexs-perl all 1.004003-1 [13.1 kB] Get:63 http://mirror.einval.org/debian sid/main arm64 liblist-compare-perl all 0.55-1 [66.9 kB] Get:64 http://mirror.einval.org/debian sid/main arm64 liblist-someutils-perl all 0.58-1 [36.5 kB] Get:65 http://mirror.einval.org/debian sid/main arm64 liblist-utilsby-perl all 0.11-1 [15.4 kB] Get:66 http://mirror.einval.org/debian sid/main arm64 liblzo2-2 arm64 2.10-2 [51.8 kB] Get:67 http://mirror.einval.org/debian sid/main arm64 libmarkdown2 arm64 2.2.7-2 [34.1 kB] Get:68 http://mirror.einval.org/debian sid/main arm64 librole-tiny-perl all 2.002004-1 [21.4 kB] Get:69 http://mirror.einval.org/debian sid/main arm64 libsub-quote-perl all 2.006006-1 [21.0 kB] Get:70 http://mirror.einval.org/debian sid/main arm64 libmoo-perl all 2.005004-3 [60.5 kB] Get:71 http://mirror.einval.org/debian sid/main arm64 libstrictures-perl all 2.000006-1 [18.6 kB] Get:72 http://mirror.einval.org/debian sid/main arm64 libmoox-aliases-perl all 0.001006-1.1 [10.8 kB] Get:73 http://mirror.einval.org/debian sid/main arm64 libmouse-perl arm64 2.5.10-1+b1 [170 kB] Get:74 http://mirror.einval.org/debian sid/main arm64 libpackage-stash-perl all 0.39-1 [21.9 kB] Get:75 http://mirror.einval.org/debian sid/main arm64 libsub-identify-perl arm64 0.14-1+b3 [11.9 kB] Get:76 http://mirror.einval.org/debian sid/main arm64 libsub-name-perl arm64 0.26-1+b1 [13.5 kB] Get:77 http://mirror.einval.org/debian sid/main arm64 libnamespace-clean-perl all 0.27-1 [17.3 kB] Get:78 http://mirror.einval.org/debian sid/main arm64 libpath-tiny-perl all 0.120-1 [54.7 kB] Get:79 http://mirror.einval.org/debian sid/main arm64 libperlio-gzip-perl arm64 0.19-1+b7 [17.0 kB] Get:80 http://mirror.einval.org/debian sid/main arm64 libperlio-utf8-strict-perl arm64 0.009-1 [11.7 kB] Get:81 http://mirror.einval.org/debian sid/main arm64 libproc-processtable-perl arm64 0.634-1 [46.1 kB] Get:82 http://mirror.einval.org/debian sid/main arm64 libsereal-decoder-perl arm64 4.018+ds-1+b1 [95.3 kB] Get:83 http://mirror.einval.org/debian sid/main arm64 libsereal-encoder-perl arm64 4.018+ds-1+b1 [98.3 kB] Get:84 http://mirror.einval.org/debian sid/main arm64 libsort-versions-perl all 1.62-1 [11.0 kB] Get:85 http://mirror.einval.org/debian sid/main arm64 libxs-parse-keyword-perl arm64 0.21-1 [49.8 kB] Get:86 http://mirror.einval.org/debian sid/main arm64 libsyntax-keyword-try-perl arm64 0.26-1 [28.4 kB] Get:87 http://mirror.einval.org/debian sid/main arm64 libterm-readkey-perl arm64 2.38-1+b2 [27.3 kB] Get:88 http://mirror.einval.org/debian sid/main arm64 libtext-levenshteinxs-perl arm64 0.03-4+b8 [8680 B] Get:89 http://mirror.einval.org/debian sid/main arm64 libtext-markdown-discount-perl arm64 0.13-1 [13.1 kB] Get:90 http://mirror.einval.org/debian sid/main arm64 libtext-xslate-perl arm64 3.5.9-1 [195 kB] Get:91 http://mirror.einval.org/debian sid/main arm64 libtime-duration-perl all 1.21-1 [13.7 kB] Get:92 http://mirror.einval.org/debian sid/main arm64 libtime-moment-perl arm64 0.44-1+b3 [75.1 kB] Get:93 http://mirror.einval.org/debian sid/main arm64 libtimedate-perl all 2.3300-2 [39.3 kB] Get:94 http://mirror.einval.org/debian sid/main arm64 libunicode-utf8-perl arm64 0.62-1+b2 [19.8 kB] Get:95 http://mirror.einval.org/debian sid/main arm64 liburi-perl all 5.10-1 [91.0 kB] Get:96 http://mirror.einval.org/debian sid/main arm64 libyaml-0-2 arm64 0.2.2-1 [45.1 kB] Get:97 http://mirror.einval.org/debian sid/main arm64 libyaml-libyaml-perl arm64 0.83+ds-1 [34.2 kB] Get:98 http://mirror.einval.org/debian sid/main arm64 lzip arm64 1.22-5 [84.8 kB] Get:99 http://mirror.einval.org/debian sid/main arm64 lzop arm64 1.04-2 [82.8 kB] Get:100 http://mirror.einval.org/debian sid/main arm64 patchutils arm64 0.4.2-1 [73.5 kB] Get:101 http://mirror.einval.org/debian sid/main arm64 t1utils arm64 1.41-4 [59.8 kB] Get:102 http://mirror.einval.org/debian sid/main arm64 unzip arm64 6.0-26 [165 kB] Get:103 http://mirror.einval.org/debian sid/main arm64 lintian all 2.114.0 [1382 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 7633 kB in 0s (40.2 MB/s) Selecting previously unselected package readline-common. (Reading database ... 18551 files and directories currently installed.) Preparing to unpack .../000-readline-common_8.1.2-1_all.deb ... Unpacking readline-common (8.1.2-1) ... Selecting previously unselected package libreadline8:arm64. Preparing to unpack .../001-libreadline8_8.1.2-1_arm64.deb ... Unpacking libreadline8:arm64 (8.1.2-1) ... Selecting previously unselected package diffstat. Preparing to unpack .../002-diffstat_1.64-1_arm64.deb ... Unpacking diffstat (1.64-1) ... Selecting previously unselected package libassuan0:arm64. Preparing to unpack .../003-libassuan0_2.5.5-1_arm64.deb ... Unpacking libassuan0:arm64 (2.5.5-1) ... Selecting previously unselected package gpgconf. Preparing to unpack .../004-gpgconf_2.2.27-3_arm64.deb ... Unpacking gpgconf (2.2.27-3) ... Selecting previously unselected package libsqlite3-0:arm64. Preparing to unpack .../005-libsqlite3-0_3.37.2-2_arm64.deb ... Unpacking libsqlite3-0:arm64 (3.37.2-2) ... Selecting previously unselected package gpg. 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Setting up libmouse-perl (2.5.10-1+b1) ... Setting up libdata-messagepack-perl (1.01-2) ... Setting up libdynaloader-functions-perl (0.003-1.1) ... Setting up libtext-glob-perl (0.11-2) ... Setting up libclass-method-modifiers-perl (2.13-1) ... Setting up liblist-compare-perl (0.55-1) ... Setting up libclone-perl (0.45-1+b1) ... Setting up libyaml-0-2:arm64 (0.2.2-1) ... Setting up libsub-identify-perl (0.14-1+b3) ... Setting up libcpanel-json-xs-perl:arm64 (4.27-1) ... Setting up libdevel-size-perl (0.83-1+b2) ... Setting up unzip (6.0-26) ... Setting up libsqlite3-0:arm64 (3.37.2-2) ... Setting up libyaml-libyaml-perl (0.83+ds-1) ... Setting up libio-interactive-perl (1.023-1) ... Setting up libtry-tiny-perl (0.31-1) ... Setting up liblzo2-2:arm64 (2.10-2) ... Setting up libtime-moment-perl (0.44-1+b3) ... Setting up libassuan0:arm64 (2.5.5-1) ... Setting up libconfig-tiny-perl (2.28-1) ... Setting up libsereal-encoder-perl (4.018+ds-1+b1) ... 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Setting up lzip (1.22-5) ... update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip (lzip) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-compressor (lzip-compressor) in auto mode update-alternatives: using /usr/bin/lzip.lzip to provide /usr/bin/lzip-decompressor (lzip-decompressor) in auto mode Setting up t1utils (1.41-4) ... Setting up diffstat (1.64-1) ... Setting up libvariable-magic-perl (0.62-1+b3) ... Setting up libb-hooks-op-check-perl (0.22-1+b3) ... Setting up liblist-moreutils-xs-perl (0.430-2) ... Setting up libparams-util-perl (1.102-1+b1) ... Setting up libtime-duration-perl (1.21-1) ... Setting up libtext-xslate-perl:arm64 (3.5.9-1) ... Setting up libsub-exporter-progressive-perl (0.001013-1) ... Setting up libcapture-tiny-perl (0.48-1) ... Setting up libtimedate-perl (2.3300-2) ... Setting up libsub-name-perl (0.26-1+b1) ... Setting up libsyntax-keyword-try-perl (0.26-1) ... 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I: Lintian run was successful. +------------------------------------------------------------------------------+ | Post Build | +------------------------------------------------------------------------------+ +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: arm64 Build Profiles: cross nocheck Build Type: any Build-Space: 74608 Build-Time: 648 Distribution: unstable Foreign Architectures: i386 Host Architecture: i386 Install-Time: 34 Job: muscle_1:5.1-1 Lintian: pass Machine Architecture: arm64 Package: muscle Package-Time: 715 Source-Version: 1:5.1-1 Space: 74608 Status: successful Version: 1:5.1-1 -------------------------------------------------------------------------------- Finished at 2022-01-19T03:32:13Z Build needed 00:11:55, 74608k disk space