sbuild (Debian sbuild) 0.73.0 (23 Dec 2016) on gcc131.bak.milne.osuosl.org +==============================================================================+ | ncbi-blast+ 2.8.1-1 (s390x) Fri, 19 Apr 2019 18:39:27 +0000 | +==============================================================================+ Package: ncbi-blast+ Version: 2.8.1-1 Source Version: 2.8.1-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: s390x Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-830e0e3f-d3d7-44f9-964b-b89aecfa7fca' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [247 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-19-0818.15.pdiff [488 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-19-1411.41.pdiff [7901 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2019-04-19-1411.41.pdiff [7901 B] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-19-0818.15.pdiff [1041 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-19-1411.41.pdiff [6151 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-04-19-1411.41.pdiff [6151 B] Get:8 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7988 kB] Fetched 8306 kB in 2s (4397 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... The following packages will be upgraded: base-files 1 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. Need to get 69.6 kB of archives. After this operation, 0 B of additional disk space will be used. Get:1 http://debian.oregonstate.edu/debian unstable/main amd64 base-files amd64 10.2 [69.6 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 69.6 kB in 0s (0 B/s) (Reading database ... (Reading database ... 5% (Reading database ... 10% (Reading database ... 15% (Reading database ... 20% (Reading database ... 25% (Reading database ... 30% (Reading database ... 35% (Reading database ... 40% (Reading database ... 45% (Reading database ... 50% (Reading database ... 55% (Reading database ... 60% (Reading database ... 65% (Reading database ... 70% (Reading database ... 75% (Reading database ... 80% (Reading database ... 85% (Reading database ... 90% (Reading database ... 95% (Reading database ... 100% (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../base-files_10.2_amd64.deb ... Unpacking base-files (10.2) over (10.1) ... Setting up base-files (10.2) ... Installing new version of config file /etc/debian_version ... Installing new version of config file /etc/issue ... Installing new version of config file /etc/issue.net ... +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-blastplus.git Please use: git clone https://salsa.debian.org/med-team/ncbi-blastplus.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.0 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.8.1-1 (dsc) [2363 B] Get:2 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.8.1-1 (tar) [25.0 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.8.1-1 (diff) [30.4 kB] Fetched 25.0 MB in 0s (58.8 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-NHHrhI' with '<>' +------------------------------------------------------------------------------+ | Install crossbuild-essential | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 Filtered Build-Depends: build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64 dpkg-deb: building package 'sbuild-build-depends-core-dummy' in '/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive/sbuild-build-depends-core-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy dpkg-scanpackages: info: Wrote 1 entries to output Packages file. Ign:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release [957 B] Ign:3 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Sources [361 B] Get:5 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Packages [449 B] Fetched 1767 B in 0s (103 kB/s) Reading package lists... Reading package lists... Install core build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sensible-utils ucf Suggested packages: binutils-doc gcc-8-locales cpp-doc binutils-multiarch g++-8-multilib-s390x-linux-gnu gcc-8-doc libstdc++6-8-dbg-s390x-cross gcc-8-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross libubsan1-dbg-s390x-cross libmpx2-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev autoconf automake libtool flex bison gdb-s390x-linux-gnu gcc-doc libyaml-shell-perl Recommended packages: libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl The following NEW packages will be installed: binutils-s390x-linux-gnu cpp-8-s390x-linux-gnu cpp-s390x-linux-gnu cross-config crossbuild-essential-s390x dpkg-cross file g++-8-s390x-linux-gnu g++-s390x-linux-gnu gcc-8-cross-base gcc-8-s390x-linux-gnu gcc-8-s390x-linux-gnu-base gcc-s390x-linux-gnu libasan5-s390x-cross libatomic1-s390x-cross libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl libconfig-inifiles-perl libdebian-dpkgcross-perl libfile-homedir-perl libfile-which-perl libgcc-8-dev-s390x-cross libgcc1-s390x-cross libgomp1-s390x-cross libicu63 libio-string-perl libitm1-s390x-cross liblocale-gettext-perl libmagic-mgc libmagic1 libstdc++-8-dev-s390x-cross libstdc++6-s390x-cross libubsan1-s390x-cross libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev-s390x-cross sbuild-build-depends-core-dummy:s390x sensible-utils ucf 0 upgraded, 45 newly installed, 0 to remove and 0 not upgraded. Need to get 39.5 MB of archives. After this operation, 145 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ sbuild-build-depends-core-dummy 0.invalid.0 [876 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.35-4 [242 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.35-4 [117 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.35-4 [66.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.31.1-16 [2127 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu-base amd64 8.3.0-4cross1 [191 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-8-s390x-linux-gnu amd64 8.3.0-4cross1 [5937 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:8.3.0-1 [16.5 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-2 [39.7 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-cross-base all 8.3.0-4cross1 [186 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.28-7cross1 [1308 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:8.3.0-4cross1 [24.8 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 8.3.0-4cross1 [67.6 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 8.3.0-4cross1 [26.4 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 8.3.0-4cross1 [8084 B] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 8.3.0-4cross1 [352 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 8.3.0-4cross1 [314 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 8.3.0-4cross1 [113 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-8-dev-s390x-cross all 8.3.0-4cross1 [640 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-8-s390x-linux-gnu amd64 8.3.0-4cross1 [6369 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:8.3.0-1 [1456 B] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 4.19.20-1cross1 [1227 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.28-7cross1 [2255 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-8-dev-s390x-cross all 8.3.0-4cross1 [1483 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 g++-8-s390x-linux-gnu amd64 8.3.0-4cross1 [6514 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:8.3.0-1 [1176 B] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.1-6 [8292 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.00+dfsg-1 [58.6 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.27-1 [66.8 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-2 [38.5 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-2 [49.3 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.6 [6568 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 39.5 MB in 1s (59.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 11936 files and directories currently installed.) Preparing to unpack .../00-liblocale-gettext-perl_1.07-3+b4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-3+b4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../01-sensible-utils_0.0.12_all.deb ... Unpacking sensible-utils (0.0.12) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../02-libmagic-mgc_1%3a5.35-4_amd64.deb ... Unpacking libmagic-mgc (1:5.35-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../03-libmagic1_1%3a5.35-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.35-4) ... Selecting previously unselected package file. Preparing to unpack .../04-file_1%3a5.35-4_amd64.deb ... Unpacking file (1:5.35-4) ... Selecting previously unselected package ucf. Preparing to unpack .../05-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... 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Selecting previously unselected package libconfig-auto-perl. Preparing to unpack .../38-libconfig-auto-perl_0.44-1_all.deb ... Unpacking libconfig-auto-perl (0.44-1) ... Selecting previously unselected package libfile-which-perl. Preparing to unpack .../39-libfile-which-perl_1.23-1_all.deb ... Unpacking libfile-which-perl (1.23-1) ... Selecting previously unselected package libfile-homedir-perl. Preparing to unpack .../40-libfile-homedir-perl_1.004-1_all.deb ... Unpacking libfile-homedir-perl (1.004-1) ... Selecting previously unselected package libdebian-dpkgcross-perl. Preparing to unpack .../41-libdebian-dpkgcross-perl_2.6.15-2_all.deb ... Unpacking libdebian-dpkgcross-perl (2.6.15-2) ... Selecting previously unselected package dpkg-cross. Preparing to unpack .../42-dpkg-cross_2.6.15-2_all.deb ... Unpacking dpkg-cross (2.6.15-2) ... Selecting previously unselected package crossbuild-essential-s390x. Preparing to unpack .../43-crossbuild-essential-s390x_12.6_all.deb ... Unpacking crossbuild-essential-s390x (12.6) ... Selecting previously unselected package sbuild-build-depends-core-dummy:s390x. Preparing to unpack .../44-sbuild-build-depends-core-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Setting up libconfig-inifiles-perl (3.000001-1) ... Setting up libfile-which-perl (1.23-1) ... Setting up binutils-s390x-linux-gnu (2.31.1-16) ... Setting up libmagic-mgc (1:5.35-4) ... Setting up gcc-8-cross-base (8.3.0-4cross1) ... Setting up libc6-s390x-cross (2.28-7cross1) ... Setting up gcc-8-s390x-linux-gnu-base:amd64 (8.3.0-4cross1) ... Setting up libatomic1-s390x-cross (8.3.0-4cross1) ... Setting up libmagic1:amd64 (1:5.35-4) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up file (1:5.35-4) ... Setting up libyaml-perl (1.27-1) ... Setting up libicu63:amd64 (63.1-6) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up linux-libc-dev-s390x-cross (4.19.20-1cross1) ... Setting up cross-config (2.6.15-2) ... Setting up cpp-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libitm1-s390x-cross (8.3.0-4cross1) ... Setting up sensible-utils (0.0.12) ... Setting up libc6-dev-s390x-cross (2.28-7cross1) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libgomp1-s390x-cross (8.3.0-4cross1) ... Setting up libxml2:amd64 (2.9.4+dfsg1-7+b3) ... Setting up liblocale-gettext-perl (1.07-3+b4) ... Setting up libgcc1-s390x-cross (1:8.3.0-4cross1) ... Setting up cpp-s390x-linux-gnu (4:8.3.0-1) ... Setting up libstdc++6-s390x-cross (8.3.0-4cross1) ... Setting up libasan5-s390x-cross (8.3.0-4cross1) ... Setting up ucf (3.0038+nmu1) ... Setting up libubsan1-s390x-cross (8.3.0-4cross1) ... Setting up libxml-sax-perl (1.00+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libxml-libxml-perl (2.0134+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up libgcc-8-dev-s390x-cross (8.3.0-4cross1) ... Setting up gcc-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libstdc++-8-dev-s390x-cross (8.3.0-4cross1) ... Setting up g++-8-s390x-linux-gnu (8.3.0-4cross1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up gcc-s390x-linux-gnu (4:8.3.0-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-2) ... Setting up g++-s390x-linux-gnu (4:8.3.0-1) ... Setting up dpkg-cross (2.6.15-2) ... Setting up crossbuild-essential-s390x (12.6) ... Setting up sbuild-build-depends-core-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (s390x included in any all) Setup apt archive ----------------- dpkg-deb: building package 'sbuild-build-depends-essential-dummy' in '/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive/sbuild-build-depends-essential-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy dpkg-scanpackages: info: Wrote 2 entries to output Packages file. Ign:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release [963 B] Ign:3 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Sources [483 B] Get:5 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Packages [569 B] Fetched 2015 B in 0s (136 kB/s) Reading package lists... Reading package lists... Install essential build dependencies (apt-based resolver) --------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following NEW packages will be installed: sbuild-build-depends-essential-dummy:s390x 0 upgraded, 1 newly installed, 0 to remove and 0 not upgraded. Need to get 840 B of archives. After this operation, 0 B of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ sbuild-build-depends-essential-dummy 0.invalid.0 [840 B] debconf: delaying package configuration, since apt-utils is not installed Fetched 840 B in 0s (0 B/s) Selecting previously unselected package sbuild-build-depends-essential-dummy:s390x. (Reading database ... 15032 files and directories currently installed.) Preparing to unpack .../sbuild-build-depends-essential-dummy_0.invalid.0_s390x.deb ... Unpacking sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... Setting up sbuild-build-depends-essential-dummy:s390x (0.invalid.0) ... +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), autotools-dev, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev Filtered Build-Depends: libc-dev, libstdc++-dev, debhelper (>= 11~), autotools-dev, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev dpkg-deb: building package 'sbuild-build-depends-ncbi-blast+-dummy' in '/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive/sbuild-build-depends-ncbi-blast+-dummy.deb'. dpkg-scanpackages: warning: Packages in archive but missing from override file: dpkg-scanpackages: warning: sbuild-build-depends-core-dummy sbuild-build-depends-essential-dummy sbuild-build-depends-ncbi-blast+-dummy dpkg-scanpackages: info: Wrote 3 entries to output Packages file. Ign:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ InRelease Get:2 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release [963 B] Ign:3 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Release.gpg Get:4 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Sources [710 B] Get:5 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ Packages [780 B] Fetched 2453 B in 0s (143 kB/s) Reading package lists... Reading package lists... Install ncbi-blast+ build dependencies (apt-based resolver) ----------------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libboost-chrono1.67.0:s390x libboost-system1.67.0:s390x libboost-test-dev:s390x libboost-test1.67-dev:s390x libboost-test1.67.0:s390x libboost-timer1.67.0:s390x libboost1.67-dev:s390x libbsd0 libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libcroco3 libelf1 libevent-2.1-6:s390x libffi6:s390x libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x libgnutlsxx28:s390x libgomp1:s390x libhogweed4:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x liblmdb-dev:s390x liblmdb0:s390x libmbedcrypto3:s390x libmbedtls-dev:s390x libmbedtls12:s390x libmbedx509-0:s390x libncurses6 libnettle6:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtasn1-6:s390x libtasn1-6-dev:s390x libtool libubsan1:s390x libuchardet0 libunbound8:s390x libunistring2:s390x linux-libc-dev:s390x m4 man-db nettle-dev:s390x po-debconf time zlib1g:s390x zlib1g-dev:s390x Suggested packages: autoconf-archive gnu-standards autoconf-doc wamerican | wordlist whois vacation dh-make gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc:s390x libboost-atomic1.67-dev:s390x libboost-chrono1.67-dev:s390x libboost-container1.67-dev:s390x libboost-date-time1.67-dev:s390x libboost-exception1.67-dev:s390x libboost-filesystem1.67-dev:s390x libboost-graph1.67-dev:s390x libboost-graph-parallel1.67-dev:s390x libboost-iostreams1.67-dev:s390x libboost-locale1.67-dev:s390x libboost-log1.67-dev:s390x libboost-math1.67-dev:s390x libboost-mpi1.67-dev:s390x libboost-mpi-python1.67-dev:s390x libboost-numpy1.67-dev:s390x libboost-program-options1.67-dev:s390x libboost-python1.67-dev:s390x libboost-random1.67-dev:s390x libboost-regex1.67-dev:s390x libboost-serialization1.67-dev:s390x libboost-signals1.67-dev:s390x libboost-stacktrace1.67-dev:s390x libboost-system1.67-dev:s390x libboost-thread1.67-dev:s390x libboost-timer1.67-dev:s390x libboost-type-erasure1.67-dev:s390x libboost-wave1.67-dev:s390x libboost1.67-tools-dev:s390x libmpfrc++-dev:s390x libntl-dev:s390x glibc-doc:s390x libc-l10n:s390x locales:s390x manpages-dev:s390x gmp-doc:s390x libgmp10-doc:s390x libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x libmbedtls-doc:s390x libstdc++-8-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:s390x libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs lmdb-doc:s390x libgpm2 libtasn1-doc:s390x libltdl-dev libmail-sendmail-perl The following NEW packages will be installed: autoconf automake autopoint autotools-dev bsdmainutils debhelper dh-autoreconf dh-strip-nondeterminism dwz gcc-8-base:s390x gettext gettext-base groff-base intltool-debian libarchive-zip-perl libasan5:s390x libatomic1:s390x libboost-chrono1.67.0:s390x libboost-system1.67.0:s390x libboost-test-dev:s390x libboost-test1.67-dev:s390x libboost-test1.67.0:s390x libboost-timer1.67.0:s390x libboost1.67-dev:s390x libbsd0 libbz2-1.0:s390x libbz2-dev:s390x libc6:s390x libc6-dev:s390x libcroco3 libelf1 libevent-2.1-6:s390x libffi6:s390x libfile-stripnondeterminism-perl libgcc-8-dev:s390x libgcc1:s390x libglib2.0-0 libgmp-dev:s390x libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x libgnutlsxx28:s390x libgomp1:s390x libhogweed4:s390x libidn2-0:s390x libidn2-dev:s390x libitm1:s390x liblmdb-dev:s390x liblmdb0:s390x libmbedcrypto3:s390x libmbedtls-dev:s390x libmbedtls12:s390x libmbedx509-0:s390x libncurses6 libnettle6:s390x libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1 libsigsegv2 libstdc++-8-dev:s390x libstdc++6:s390x libtasn1-6:s390x libtasn1-6-dev:s390x libtool libubsan1:s390x libuchardet0 libunbound8:s390x libunistring2:s390x linux-libc-dev:s390x m4 man-db nettle-dev:s390x po-debconf sbuild-build-depends-ncbi-blast+-dummy:s390x time zlib1g:s390x zlib1g-dev:s390x 0 upgraded, 85 newly installed, 0 to remove and 0 not upgraded. Need to get 38.2 MB of archives. After this operation, 263 MB of additional disk space will be used. Get:1 copy:/build/ncbi-blast+-NHHrhI/resolver-0ulhxQ/apt_archive ./ sbuild-build-depends-ncbi-blast+-dummy 0.invalid.0 [944 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.9.1-2 [99.5 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.5-2 [1274 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-10 [547 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.64-1 [96.8 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.1.2-1 [19.8 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.1.2-1 [13.0 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1 [160 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.12-3 [78.0 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.58.3-1 [1258 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.12-3 [145 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20181013-2 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.1.1 [1016 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main s390x gcc-8-base s390x 8.3.0-6 [191 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:8.3.0-6 [24.8 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.28-8 [2504 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 8.3.0-6 [391 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 8.3.0-6 [321 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 8.3.0-6 [8184 B] Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libboost-system1.67.0 s390x 1.67.0-13 [229 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libboost-chrono1.67.0 s390x 1.67.0-13 [233 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 8.3.0-6 [69.0 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 8.3.0-6 [26.7 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 8.3.0-6 [113 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-8-dev s390x 8.3.0-6 [641 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 4.19.28-2 [1155 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.28-8 [2269 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-8-dev s390x 8.3.0-6 [1502 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main s390x libboost1.67-dev s390x 1.67.0-13 [8386 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main s390x libboost-timer1.67.0 s390x 1.67.0-13 [230 kB] Get:46 http://debian.oregonstate.edu/debian unstable/main s390x libboost-test1.67.0 s390x 1.67.0-13 [432 kB] Get:47 http://debian.oregonstate.edu/debian unstable/main s390x libboost-test1.67-dev s390x 1.67.0-13 [482 kB] Get:48 http://debian.oregonstate.edu/debian unstable/main s390x libboost-test-dev s390x 1.67.0.1 [3684 B] Get:49 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-1.0 s390x 1.0.6-9 [45.2 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main s390x libbz2-dev s390x 1.0.6-9 [30.4 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main s390x libevent-2.1-6 s390x 2.1.8-stable-4 [170 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main s390x libffi6 s390x 3.2.1-9 [18.9 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.1.2+dfsg-4 [238 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-4 [22.6 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main s390x libgmp-dev s390x 2:6.1.2+dfsg-4 [617 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main s390x libnettle6 s390x 3.4.1-1 [225 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed4 s390x 3.4.1-1 [139 kB] Get:58 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-1 [370 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.0.5-1 [75.1 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.15-2 [313 kB] Get:61 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.13-3 [49.5 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.7-2 [1021 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main s390x libunbound8 s390x 1.9.0-2 [425 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-dane0 s390x 3.6.7-2 [316 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-openssl27 s390x 3.6.7-2 [316 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main s390x libgnutlsxx28 s390x 3.6.7-2 [13.9 kB] Get:67 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-dev s390x 2.0.5-1 [77.9 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit-dev s390x 0.23.15-2 [195 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6-dev s390x 4.13-3 [102 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main s390x nettle-dev s390x 3.4.1-1 [1085 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls28-dev s390x 3.6.7-2 [985 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main s390x liblmdb0 s390x 0.9.22-1 [44.3 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main s390x liblmdb-dev s390x 0.9.22-1 [60.4 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main s390x libmbedcrypto3 s390x 2.16.0-1 [201 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main s390x libmbedx509-0 s390x 2.16.0-1 [89.2 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main s390x libmbedtls12 s390x 2.16.0-1 [121 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main s390x libmbedtls-dev s390x 2.16.0-1 [471 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main s390x libpcre16-3 s390x 2:8.39-12 [188 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3 s390x 2:8.39-12 [262 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main s390x libpcre32-3 s390x 2:8.39-12 [183 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main s390x libpcrecpp0v5 s390x 2:8.39-12 [151 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3-dev s390x 2:8.39-12 [481 kB] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1 [90.6 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1 [211 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 38.2 MB in 1s (59.0 MB/s) Selecting previously unselected package libbsd0:amd64. 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Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libbsd0:amd64 (0.9.1-2) ... Setting up libelf1:amd64 (0.176-1) ... Setting up libfile-stripnondeterminism-perl (1.1.2-1) ... Setting up gettext (0.19.8.1-9) ... Setting up libtool (2.4.6-10) ... Setting up m4 (1.4.18-2) ... Setting up intltool-debian (0.35.0+20060710.5) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up autoconf (2.69-11) ... Setting up dwz (0.12-3) ... Setting up groff-base (1.22.4-3) ... Setting up automake (1:1.16.1-4) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up po-debconf (1.0.21) ... Setting up man-db (2.8.5-2) ... Not building database; man-db/auto-update is not 'true'. Setting up libgcc1:s390x (1:8.3.0-6) ... Setting up debhelper (12.1.1) ... Setting up dh-autoreconf (19) ... Setting up libc6:s390x (2.28-8) ... Setting up dh-strip-nondeterminism (1.1.2-1) ... Setting up libtasn1-6:s390x (4.13-3) ... Setting up libmbedcrypto3:s390x (2.16.0-1) ... Setting up libc6-dev:s390x (2.28-8) ... Setting up libbz2-1.0:s390x (1.0.6-9) ... Setting up libtasn1-6-dev:s390x (4.13-3) ... Setting up libstdc++6:s390x (8.3.0-6) ... Setting up libitm1:s390x (8.3.0-6) ... Setting up libbz2-dev:s390x (1.0.6-9) ... Setting up liblmdb0:s390x (0.9.22-1) ... Setting up libpcre16-3:s390x (2:8.39-12) ... Setting up libmbedx509-0:s390x (2.16.0-1) ... Setting up libmbedtls12:s390x (2.16.0-1) ... Setting up libunistring2:s390x (0.9.10-1) ... Setting up zlib1g:s390x (1:1.2.11.dfsg-1) ... Setting up libffi6:s390x (3.2.1-9) ... Setting up libidn2-0:s390x (2.0.5-1) ... Setting up libmbedtls-dev:s390x (2.16.0-1) ... Setting up libgomp1:s390x (8.3.0-6) ... Setting up libasan5:s390x (8.3.0-6) ... Setting up libpcre3:s390x (2:8.39-12) ... Setting up libgmp10:s390x (2:6.1.2+dfsg-4) ... Setting up libp11-kit0:s390x (0.23.15-2) ... Setting up libpcre32-3:s390x (2:8.39-12) ... Setting up libatomic1:s390x (8.3.0-6) ... Setting up libnettle6:s390x (3.4.1-1) ... Setting up libidn2-dev:s390x (2.0.5-1) ... Setting up liblmdb-dev:s390x (0.9.22-1) ... Setting up libevent-2.1-6:s390x (2.1.8-stable-4) ... Setting up libubsan1:s390x (8.3.0-6) ... Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1) ... Setting up libboost-system1.67.0:s390x (1.67.0-13) ... Setting up libp11-kit-dev:s390x (0.23.15-2) ... Setting up libpcrecpp0v5:s390x (2:8.39-12) ... Setting up libboost-chrono1.67.0:s390x (1.67.0-13) ... Setting up libpcre3-dev:s390x (2:8.39-12) ... Setting up libhogweed4:s390x (3.4.1-1) ... Setting up libunbound8:s390x (1.9.0-2) ... Setting up libgnutls30:s390x (3.6.7-2) ... Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-4) ... Setting up libgnutlsxx28:s390x (3.6.7-2) ... Setting up libgcc-8-dev:s390x (8.3.0-6) ... Setting up libboost-timer1.67.0:s390x (1.67.0-13) ... Setting up libstdc++-8-dev:s390x (8.3.0-6) ... Setting up libboost1.67-dev:s390x (1.67.0-13) ... Setting up libgnutls-dane0:s390x (3.6.7-2) ... Setting up libgnutls-openssl27:s390x (3.6.7-2) ... Setting up libgmp-dev:s390x (2:6.1.2+dfsg-4) ... Setting up nettle-dev:s390x (3.4.1-1) ... Setting up libboost-test1.67.0:s390x (1.67.0-13) ... Setting up libboost-test1.67-dev:s390x (1.67.0-13) ... Setting up libboost-test-dev:s390x (1.67.0.1) ... Setting up libgnutls28-dev:s390x (3.6.7-2) ... Setting up sbuild-build-depends-ncbi-blast+-dummy:s390x (0.invalid.0) ... Processing triggers for libc-bin (2.28-8) ... +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.9.0-8-amd64 amd64 (x86_64) Toolchain package versions: binutils_2.31.1-16 dpkg-dev_1.19.6 g++-8_8.3.0-6 gcc-8_8.3.0-6 libc6-dev_2.28-8 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-s390x-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-s390x-cross_8.3.0-4cross1 linux-libc-dev_4.19.28-2 Package versions: adduser_3.118 apt_1.8.0 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_10.2 base-passwd_3.5.46 bash_5.0-4 binutils_2.31.1-16 binutils-common_2.31.1-16 binutils-s390x-linux-gnu_2.31.1-16 binutils-x86-64-linux-gnu_2.31.1-16 bsdmainutils_11.1.2+b1 bsdutils_1:2.33.1-0.1 build-essential_12.6 bzip2_1.0.6-9 coreutils_8.30-3 cpp_4:8.3.0-1 cpp-8_8.3.0-6 cpp-8-s390x-linux-gnu_8.3.0-4cross1 cpp-s390x-linux-gnu_4:8.3.0-1 cross-config_2.6.15-2 crossbuild-essential-s390x_12.6 dash_0.5.10.2-5 debconf_1.5.71 debhelper_12.1.1 debian-archive-keyring_2018.1 debianutils_4.8.6.1 dh-autoreconf_19 dh-strip-nondeterminism_1.1.2-1 diffutils_1:3.7-3 dpkg_1.19.6 dpkg-cross_2.6.15-2 dpkg-dev_1.19.6 dwz_0.12-3 e2fsprogs_1.45.0-1 fakeroot_1.23-1 fdisk_2.33.1-0.1 file_1:5.35-4 findutils_4.6.0+git+20190209-2 g++_4:8.3.0-1 g++-8_8.3.0-6 g++-8-s390x-linux-gnu_8.3.0-4cross1 g++-s390x-linux-gnu_4:8.3.0-1 gcc_4:8.3.0-1 gcc-8_8.3.0-6 gcc-8-base_8.3.0-6 gcc-8-cross-base_8.3.0-4cross1 gcc-8-s390x-linux-gnu_8.3.0-4cross1 gcc-8-s390x-linux-gnu-base_8.3.0-4cross1 gcc-s390x-linux-gnu_4:8.3.0-1 gettext_0.19.8.1-9 gettext-base_0.19.8.1-9 gpgv_2.2.13-1 grep_3.3-1 groff-base_1.22.4-3 gzip_1.9-3 hostname_3.21 init-system-helpers_1.56+nmu1 intltool-debian_0.35.0+20060710.5 libacl1_2.2.53-4 libapt-pkg5.0_1.8.0 libarchive-zip-perl_1.64-1 libasan5_8.3.0-6 libasan5-s390x-cross_8.3.0-4cross1 libatomic1_8.3.0-6 libatomic1-s390x-cross_8.3.0-4cross1 libattr1_1:2.4.48-4 libaudit-common_1:2.8.4-2 libaudit1_1:2.8.4-2 libbinutils_2.31.1-16 libblkid1_2.33.1-0.1 libboost-chrono1.67.0_1.67.0-13 libboost-system1.67.0_1.67.0-13 libboost-test-dev_1.67.0.1 libboost-test1.67-dev_1.67.0-13 libboost-test1.67.0_1.67.0-13 libboost-timer1.67.0_1.67.0-13 libboost1.67-dev_1.67.0-13 libbsd0_0.9.1-2 libbz2-1.0_1.0.6-9 libbz2-dev_1.0.6-9 libc-bin_2.28-8 libc-dev-bin_2.28-8 libc6_2.28-8 libc6-dev_2.28-8 libc6-dev-s390x-cross_2.28-7cross1 libc6-s390x-cross_2.28-7cross1 libcap-ng0_0.7.9-2 libcc1-0_8.3.0-6 libcom-err2_1.45.0-1 libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.12-3 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-2 libdpkg-perl_1.19.6 libelf1_0.176-1 libevent-2.1-6_2.1.8-stable-4 libext2fs2_1.45.0-1 libfakeroot_1.23-1 libfdisk1_2.33.1-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.1.2-1 libfile-which-perl_1.23-1 libgcc-8-dev_8.3.0-6 libgcc-8-dev-s390x-cross_8.3.0-4cross1 libgcc1_1:8.3.0-6 libgcc1-s390x-cross_1:8.3.0-4cross1 libgcrypt20_1.8.4-5 libgdbm-compat4_1.18.1-4 libgdbm6_1.18.1-4 libglib2.0-0_2.58.3-1 libgmp-dev_2:6.1.2+dfsg-4 libgmp10_2:6.1.2+dfsg-4 libgmpxx4ldbl_2:6.1.2+dfsg-4 libgnutls-dane0_3.6.7-2 libgnutls-openssl27_3.6.7-2 libgnutls28-dev_3.6.7-2 libgnutls30_3.6.7-2 libgnutlsxx28_3.6.7-2 libgomp1_8.3.0-6 libgomp1-s390x-cross_8.3.0-4cross1 libgpg-error0_1.35-1 libhogweed4_3.4.1-1 libicu63_63.1-6 libidn2-0_2.0.5-1 libidn2-dev_2.0.5-1 libio-string-perl_1.08-3 libisl19_0.20-2 libitm1_8.3.0-6 libitm1-s390x-cross_8.3.0-4cross1 liblmdb-dev_0.9.22-1 liblmdb0_0.9.22-1 liblocale-gettext-perl_1.07-3+b4 liblsan0_8.3.0-6 liblz4-1_1.8.3-1 liblzma5_5.2.4-1 libmagic-mgc_1:5.35-4 libmagic1_1:5.35-4 libmbedcrypto3_2.16.0-1 libmbedtls-dev_2.16.0-1 libmbedtls12_2.16.0-1 libmbedx509-0_2.16.0-1 libmount1_2.33.1-0.1 libmpc3_1.1.0-1 libmpfr6_4.0.2-1 libmpx2_8.3.0-6 libncurses6_6.1+20181013-2 libncursesw6_6.1+20181013-2 libnettle6_3.4.1-1 libp11-kit-dev_0.23.15-2 libp11-kit0_0.23.15-2 libpam-modules_1.3.1-5 libpam-modules-bin_1.3.1-5 libpam-runtime_1.3.1-5 libpam0g_1.3.1-5 libpcre16-3_2:8.39-12 libpcre3_2:8.39-12 libpcre3-dev_2:8.39-12 libpcre32-3_2:8.39-12 libpcrecpp0v5_2:8.39-12 libperl5.28_5.28.1-6 libpipeline1_1.5.1-2 libquadmath0_8.3.0-6 libseccomp2_2.3.3-4 libselinux1_2.8-1+b1 libsemanage-common_2.8-2 libsemanage1_2.8-2 libsepol1_2.8-1 libsigsegv2_2.12-2 libsmartcols1_2.33.1-0.1 libss2_1.45.0-1 libstdc++-8-dev_8.3.0-6 libstdc++-8-dev-s390x-cross_8.3.0-4cross1 libstdc++6_8.3.0-6 libstdc++6-s390x-cross_8.3.0-4cross1 libsystemd0_241-3 libtasn1-6_4.13-3 libtasn1-6-dev_4.13-3 libtinfo6_6.1+20181013-2 libtool_2.4.6-10 libtsan0_8.3.0-6 libubsan1_8.3.0-6 libubsan1-s390x-cross_8.3.0-4cross1 libuchardet0_0.0.6-3 libudev1_241-3 libunbound8_1.9.0-2 libunistring2_0.9.10-1 libuuid1_2.33.1-0.1 libxml-libxml-perl_2.0134+dfsg-1 libxml-namespacesupport-perl_1.12-1 libxml-sax-base-perl_1.09-1 libxml-sax-perl_1.00+dfsg-1 libxml-simple-perl_2.25-1 libxml2_2.9.4+dfsg1-7+b3 libyaml-perl_1.27-1 libzstd1_1.3.8+dfsg-3 linux-libc-dev_4.19.28-2 linux-libc-dev-s390x-cross_4.19.20-1cross1 login_1:4.5-1.1 m4_1.4.18-2 make_4.2.1-1.2 man-db_2.8.5-2 mawk_1.3.3-17+b3 mount_2.33.1-0.1 ncurses-base_6.1+20181013-2 ncurses-bin_6.1+20181013-2 nettle-dev_3.4.1-1 passwd_1:4.5-1.1 patch_2.7.6-3 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 po-debconf_1.0.21 sbuild-build-depends-core-dummy_0.invalid.0 sbuild-build-depends-essential-dummy_0.invalid.0 sbuild-build-depends-ncbi-blast+-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.93-8 tar_1.30+dfsg-5 time_1.7-25.1+b1 tzdata_2019a-1 ucf_3.0038+nmu1 util-linux_2.33.1-0.1 xz-utils_5.2.4-1 zlib1g_1:1.2.11.dfsg-1 zlib1g-dev_1:1.2.11.dfsg-1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Mon Feb 4 03:52:31 2019 UTC gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: issuer "ucko@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.8.1-1.dsc dpkg-source: info: extracting ncbi-blast+ in /build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1 dpkg-source: info: unpacking ncbi-blast+_2.8.1.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.8.1-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying system_mbedtls_only Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=POSIX LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-830e0e3f-d3d7-44f9-964b-b89aecfa7fca SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.8.1-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture s390x debian/rules clean #dh clean -Dc++ --with autotools_dev dh clean -Dc++ dh_testdir -O-Dc\+\+ dh_auto_clean -O-Dc\+\+ dh_autoreconf_clean -O-Dc\+\+ debian/rules override_dh_clean make[1]: Entering directory '/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1' cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD/build/new_module.sh: not found make[1]: [debian/rules:109: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module find -name check_exec.pid -delete rm -rf c++/BUILD mv configure.orig.save c++/configure.orig make[1]: Leaving directory '/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1' debian/rules binary-arch #dh binary-arch -Dc++ --with autotools_dev dh binary-arch -Dc++ dh_testdir -a -O-Dc\+\+ dh_update_autotools_config -a -O-Dc\+\+ dh_autoreconf -a -O-Dc\+\+ debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1' cd c++ && LD_LIBRARY_PATH=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++/BUILD/lib${LD_LIBRARY_PATH+:$LD_LIBRARY_PATH} \ CONFIG_SHELL=/bin/bash ./configure --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed" \ || (tail -v -n +0 config.log BUILD/status/config.log; exit 1) configure: creating cache config.cache configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... 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select.h... no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/eventfd.h usability... yes checking sys/eventfd.h presence... yes checking for sys/eventfd.h... yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking whether time.h and sys/time.h may both be included... yes checking cxxabi.h usability... yes checking cxxabi.h presence... yes checking for cxxabi.h... yes checking whether abi::__cxa_demangle is declared... yes checking for gethostbyname_r... 6 checking for gethostbyaddr_r... 8 checking for getservbyname_r... 6 checking for getpwuid_r... 5 checking for getlogin_r... yes checking for localtime_r... yes checking for pthread_setconcurrency... yes checking for 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readv... yes checking for select... yes checking for setenv... yes checking for setitimer... yes checking for setrlimit... yes checking for snprintf... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strnlen... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking whether stdio supports locking... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... no checking whether char is unsigned... no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... 4 checking for long... yes checking size of long... 8 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for ios(_base)::register_callback... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... up checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -maes... yes checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether /usr/bin/g++ -std=gnu++11 -msse4.2 supports __builtin_bswap32... yes checking whether /usr/bin/g++ -std=gnu++11 -msse4.2 supports __builtin_expect... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... no checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for clock_gettime... yes checking for nanosleep... yes checking for pthread_cond_timedwait_relative_np... no checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking whether CLOCK_MONOTONIC is declared... yes checking whether CLOCK_SGI_CYCLE is declared... no checking whether CLOCK_REALTIME is declared... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libdw... no checking for libbackward... no checking for libz... no configure: using local zlib copy in util/compress/zlib checking for libbz2... no configure: using local bzlib copy in util/compress/bzip2 checking for libpcre... no configure: using local PCRE copy in util/regexp checking for libmbedtls... no configure: error: --with-mbedtls explicitly specified, but no usable version found. ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ncbi-tools++ configure 0.0, which was generated by GNU Autoconf 2.60. Invocation command line was $ /build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++/src/build-system/configure --srcdir=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++ --without-debug --with-strip --with-openmp --with-mt --without-vdb --without-gnutls --without-gcrypt --with-build-root=./ReleaseMT --with-dll --with-mt --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --with-runpath=/usr/lib/ncbi-blast+ --with-build-root=BUILD --without-debug --without-downloaded-vdb --with-mbedtls --with-symbols CFLAGS_FOR_BUILD=-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE LDFLAGS_FOR_BUILD=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.9.0-8-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.9.144-3.1 (2019-02-19) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:3002: creating cache config.cache configure:4718: WARNING: --with(out)-dbapi is deprecated configure:4720: WARNING: please simply pass an appropriate project list configure:4829: checking TeamCity build number configure:4838: result: none configure:4843: checking Subversion revision configure:4854: result: unknown configure:4859: checking NCBI stable components' version configure:4871: result: unknown configure:4920: checking build system type configure:4938: result: x86_64-pc-linux-gnu configure:4960: checking host system type configure:4975: result: x86_64-pc-linux-gnu configure:5033: checking for a BSD-compatible install configure:5089: result: /usr/bin/install -c configure:5185: checking for gcc configure:5201: found /usr/bin/gcc configure:5212: result: gcc configure:5450: checking for C compiler version configure:5457: gcc --version >&5 gcc (Debian 8.3.0-6) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5460: $? = 0 configure:5467: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 8.3.0-6' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.3.0 (Debian 8.3.0-6) configure:5470: $? = 0 configure:5477: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:5480: $? = 1 configure:5503: checking for C compiler default output file name configure:5530: gcc -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.c >&5 configure:5533: $? = 0 configure:5579: result: a.out configure:5584: checking whether the C compiler works configure:5594: ./a.out configure:5597: $? = 0 configure:5614: result: yes configure:5621: checking whether we are cross compiling configure:5623: result: no configure:5626: checking for suffix of executables configure:5633: gcc -o conftest -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.c >&5 configure:5636: $? = 0 configure:5660: result: configure:5666: checking for suffix of object files configure:5692: gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5695: $? = 0 configure:5718: result: o configure:5722: checking whether we are using the GNU C compiler configure:5751: gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5757: $? = 0 configure:5764: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:5767: $? = 0 configure:5774: test -s conftest.o configure:5777: $? = 0 configure:5791: result: yes configure:5796: checking whether gcc accepts -g configure:5826: gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5832: $? = 0 configure:5839: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:5842: $? = 0 configure:5849: test -s conftest.o configure:5852: $? = 0 configure:5982: result: yes configure:5999: checking for gcc option to accept ISO C89 configure:6073: gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6079: $? = 0 configure:6086: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:6089: $? = 0 configure:6096: test -s conftest.o configure:6099: $? = 0 configure:6119: result: none needed configure:6142: checking how to run the C preprocessor configure:6182: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:6188: $? = 0 configure:6226: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:9:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6232: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:6272: result: gcc -E configure:6301: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:6307: $? = 0 configure:6345: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:9:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6351: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:6452: checking for gcc configure:6468: found /usr/bin/gcc configure:6479: result: gcc configure:6717: checking for C compiler version configure:6724: gcc --version >&5 gcc (Debian 8.3.0-6) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6727: $? = 0 configure:6734: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 8.3.0-6' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.3.0 (Debian 8.3.0-6) configure:6737: $? = 0 configure:6744: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:6747: $? = 1 configure:6750: checking whether we are using the GNU C compiler configure:6819: result: yes configure:6824: checking whether gcc accepts -g configure:6854: gcc -c -g conftest.c >&5 configure:6860: $? = 0 configure:6867: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:6870: $? = 0 configure:6877: test -s conftest.o configure:6880: $? = 0 configure:7010: result: yes configure:7027: checking for gcc option to accept ISO C89 configure:7101: gcc -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE conftest.c >&5 configure:7107: $? = 0 configure:7114: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:7117: $? = 0 configure:7124: test -s conftest.o configure:7127: $? = 0 configure:7147: result: none needed configure:7170: checking how to run the C preprocessor configure:7210: gcc -E conftest.c configure:7216: $? = 0 configure:7254: gcc -E conftest.c conftest.c:9:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7260: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:7300: result: gcc -E configure:7329: gcc -E conftest.c configure:7335: $? = 0 configure:7373: gcc -E conftest.c conftest.c:9:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7379: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:7491: checking for g++ configure:7507: found /usr/bin/g++ configure:7518: result: g++ configure:7549: checking for C++ compiler version configure:7556: g++ --version >&5 g++ (Debian 8.3.0-6) 8.3.0 Copyright (C) 2018 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7559: $? = 0 configure:7566: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/8/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 8.3.0-6' --with-bugurl=file:///usr/share/doc/gcc-8/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++ --prefix=/usr --with-gcc-major-version-only --program-suffix=-8 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-libmpx --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu Thread model: posix gcc version 8.3.0 (Debian 8.3.0-6) configure:7569: $? = 0 configure:7576: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:7579: $? = 1 configure:7582: checking whether we are using the GNU C++ compiler configure:7611: g++ -c -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:7617: $? = 0 configure:7624: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:7627: $? = 0 configure:7634: test -s conftest.o configure:7637: $? = 0 configure:7651: result: yes configure:7656: checking whether g++ accepts -g configure:7686: g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:7692: $? = 0 configure:7699: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:7702: $? = 0 configure:7709: test -s conftest.o configure:7712: $? = 0 configure:7842: result: yes configure:8920: checking whether /usr/bin/gcc has an option to export all symbols configure:8951: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--export-all-symbols -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 /usr/bin/ld: unrecognized option '--export-all-symbols' /usr/bin/ld: use the --help option for usage information collect2: error: ld returned 1 exit status configure:8957: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:8951: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:8957: $? = 0 configure:8964: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:8967: $? = 0 configure:8974: test -s conftest configure:8977: $? = 0 configure:8993: result: -Wl,-export-dynamic configure:8997: checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags configure:9025: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9031: $? = 0 configure:9038: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9041: $? = 0 configure:9048: test -s conftest configure:9051: $? = 0 configure:9065: result: yes configure:9077: checking whether /usr/bin/gcc has an option to discard unneeded shared libraries configure:9107: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9113: $? = 0 configure:9120: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9123: $? = 0 configure:9130: test -s conftest configure:9133: $? = 0 configure:9149: result: -Wl,--as-needed configure:9162: checking whether /usr/bin/gcc has an option to link in whole static archives configure:9192: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -Wl,--whole-archive -Wl,--no-whole-archive conftest.cpp -lm -lpthread >&5 configure:9198: $? = 0 configure:9205: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9208: $? = 0 configure:9215: test -s conftest configure:9218: $? = 0 configure:9234: result: -Wl,--whole-archive configure:9332: checking whether _LIBCPP_VERSION is declared configure:9363: /usr/bin/g++ -c -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:19:22: error: '_LIBCPP_VERSION' was not declared in this scope char *p = (char *) _LIBCPP_VERSION; ^~~~~~~~~~~~~~~ conftest.cpp:19:22: note: suggested alternative: 'NCBI_COMPILER_VERSION' char *p = (char *) _LIBCPP_VERSION; ^~~~~~~~~~~~~~~ NCBI_COMPILER_VERSION configure:9369: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include | | int | main () | { | #ifndef _LIBCPP_VERSION | char *p = (char *) _LIBCPP_VERSION; | return !p; | #endif | | ; | return 0; | } configure:9401: result: no configure:9405: checking how to enable C++ '11 features in /usr/bin/g++ configure:9435: /usr/bin/g++ -std=gnu++11 -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9441: $? = 0 configure:9448: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9451: $? = 0 configure:9458: test -s conftest configure:9461: $? = 0 configure:9477: result: -std=gnu++11 configure:9494: checking how to enable C '11 or at least '99 features in /usr/bin/gcc configure:9527: /usr/bin/gcc -xc99=all -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.c -lm -lpthread >&5 gcc: error: language c99=all not recognized gcc: error: language c99=all not recognized configure:9533: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:9527: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.c -lm -lpthread >&5 configure:9533: $? = 0 configure:9540: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:9543: $? = 0 configure:9550: test -s conftest configure:9553: $? = 0 configure:9569: result: -std=gnu11 -fgnu89-inline configure:9578: checking whether /usr/bin/gcc supports -msse4.2 configure:9606: /usr/bin/gcc -msse4.2 -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.c -lm -lpthread >&5 conftest.c: In function 'main': conftest.c:17:13: warning: 'v' is used uninitialized in this function [-Wuninitialized] __m128i v; _mm_cmpgt_epi64(v, v); ^~~~~~~~~~~~~~~~~~~~~ configure:9612: $? = 0 configure:9619: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:9622: $? = 0 configure:9629: test -s conftest configure:9632: $? = 0 configure:9645: result: yes configure:9668: checking whether /usr/bin/g++ -std=gnu++11 supports -msse4.2 configure:9695: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9701: $? = 0 configure:9708: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9711: $? = 0 configure:9718: test -s conftest configure:9721: $? = 0 configure:9734: result: yes configure:9922: checking for dpkg-architecture configure:9940: found /usr/bin/dpkg-architecture configure:9952: result: /usr/bin/dpkg-architecture configure:10227: checking for gawk configure:10257: result: no configure:10227: checking for mawk configure:10243: found /usr/bin/mawk configure:10254: result: mawk configure:10265: checking for GNU make configure:10281: result: /usr/bin/make configure:10299: checking for /usr/bin/make configure:10329: result: /usr/bin/make configure:10386: checking whether ln -s works configure:10390: result: yes configure:10445: checking for ranlib configure:10461: found /usr/bin/ranlib configure:10472: result: ranlib configure:10500: checking for ar configure:10516: found /usr/bin/ar configure:10528: result: ar cr configure:10537: checking ranlib's effectiveness /usr/bin/g++ -std=gnu++11 -msse4.2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c conftest.cpp ar cr conftest.a conftest.o configure:10577: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp conftest.a -lm -lpthread >&5 configure:10583: $? = 0 configure:10590: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:10593: $? = 0 configure:10600: test -s conftest configure:10603: $? = 0 ranlib conftest.a configure:10638: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp conftest.a -lm -lpthread >&5 configure:10644: $? = 0 configure:10651: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:10654: $? = 0 configure:10661: test -s conftest configure:10664: $? = 0 configure:10685: result: neutral configure:10698: checking for strip configure:10714: found /usr/bin/strip configure:10726: result: strip configure:10734: checking whether strip loses runtime type information /usr/bin/g++ -std=gnu++11 -msse4.2 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -o conftest conftest.cpp configure:10776: result: no configure:10953: checking for ccache configure:10986: result: no configure:11011: checking for tail configure:11029: found /usr/bin/tail configure:11041: result: /usr/bin/tail configure:11049: checking whether /usr/bin/tail accepts modern syntax (-n N) configure:11053: result: yes configure:11063: checking for basename configure:11081: found /usr/bin/basename configure:11093: result: /usr/bin/basename configure:11103: checking for sed configure:11121: found /bin/sed configure:11133: result: /bin/sed configure:11143: checking for touch configure:11162: found /bin/touch configure:11174: result: /bin/touch configure:11182: checking for grep that handles long lines and -e configure:11256: result: /bin/grep configure:11261: checking for egrep configure:11339: result: /bin/grep -E configure:11344: checking how to run /bin/grep -E quietly configure:11353: result: /bin/grep -E -q configure:11358: checking for valgrind configure:11388: result: no configure:11396: checking for ldd configure:11415: found /usr/bin/ldd configure:11427: result: /usr/bin/ldd configure:11436: checking whether /usr/bin/ldd accepts -r configure:11439: result: yes configure:11450: checking for uuidgen configure:11483: result: no configure:11490: checking for cd_reporter configure:11524: result: no configure:11637: checking how to run the C++ preprocessor configure:11673: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:11679: $? = 0 configure:11717: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:13:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11723: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include configure:11763: result: /usr/bin/g++ -std=gnu++11 -msse4.2 -E configure:11792: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:11798: $? = 0 configure:11836: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:13:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11842: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include configure:11887: checking for ANSI C header files configure:11917: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:11923: $? = 0 configure:11930: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:11933: $? = 0 configure:11940: test -s conftest.o configure:11943: $? = 0 configure:12039: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:12042: $? = 0 configure:12048: ./conftest configure:12051: $? = 0 configure:12068: result: yes configure:12092: checking for sys/types.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for sys/stat.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for stdlib.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for string.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for memory.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for strings.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for inttypes.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for stdint.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12092: checking for unistd.h configure:12113: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12119: $? = 0 configure:12126: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12129: $? = 0 configure:12136: test -s conftest.o configure:12139: $? = 0 configure:12152: result: yes configure:12164: checking for size_t configure:12194: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12200: $? = 0 configure:12207: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12210: $? = 0 configure:12217: test -s conftest.o configure:12220: $? = 0 configure:12232: result: yes configure:12244: checking for size_t configure:12312: result: yes configure:12315: checking size of size_t configure:12703: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:12706: $? = 0 configure:12712: ./conftest configure:12715: $? = 0 configure:12737: result: 8 configure:12869: checking for amq configure:12903: result: no configure:13110: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined configure:13138: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -fPIC -shared -Wl,--no-allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:13144: $? = 0 configure:13151: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:13154: $? = 0 configure:13161: test -s conftest configure:13164: $? = 0 configure:13178: result: yes configure:13266: checking how to run the C preprocessor configure:13396: result: gcc -E configure:13425: gcc -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c configure:13431: $? = 0 configure:13469: gcc -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:29:10: fatal error: ac_nonexistent.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:13475: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | /* end confdefs.h. */ | #include configure:13748: checking whether cross-directory hard links work configure:13762: result: yes configure:13892: checking iostream usability configure:13909: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:13915: $? = 0 configure:13922: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:13925: $? = 0 configure:13932: test -s conftest.o configure:13935: $? = 0 configure:13946: result: yes configure:13950: checking iostream presence configure:13965: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:13971: $? = 0 configure:13992: result: yes configure:14025: checking for iostream configure:14033: result: yes configure:13892: checking iostream.h usability configure:13909: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:63:10: fatal error: iostream.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. configure:13915: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:13946: result: no configure:13950: checking iostream.h presence configure:13965: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:30:10: fatal error: iostream.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. configure:13971: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | /* end confdefs.h. */ | #include configure:13992: result: no configure:14025: checking for iostream.h configure:14033: result: no configure:14062: checking fstream usability configure:14079: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14085: $? = 0 configure:14092: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14095: $? = 0 configure:14102: test -s conftest.o configure:14105: $? = 0 configure:14116: result: yes configure:14120: checking fstream presence configure:14135: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14141: $? = 0 configure:14162: result: yes configure:14195: checking for fstream configure:14203: result: yes configure:14062: checking fstream.h usability configure:14079: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:64:10: fatal error: fstream.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:14085: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14116: result: no configure:14120: checking fstream.h presence configure:14135: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:31:10: fatal error: fstream.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:14141: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | /* end confdefs.h. */ | #include configure:14162: result: no configure:14195: checking for fstream.h configure:14203: result: no configure:14233: checking strstream usability configure:14250: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 In file included from /usr/include/c++/8/backward/strstream:50, from conftest.cpp:64: /usr/include/c++/8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^~~~~~~ configure:14256: $? = 0 configure:14263: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14266: $? = 0 configure:14273: test -s conftest.o configure:14276: $? = 0 configure:14287: result: yes configure:14291: checking strstream presence configure:14306: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp In file included from /usr/include/c++/8/backward/strstream:50, from conftest.cpp:31: /usr/include/c++/8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^~~~~~~ configure:14312: $? = 0 configure:14333: result: yes configure:14366: checking for strstream configure:14374: result: yes configure:14233: checking strstream.h usability configure:14250: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:65:10: fatal error: strstream.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:14256: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14287: result: no configure:14291: checking strstream.h presence configure:14306: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:32:10: fatal error: strstream.h: No such file or directory #include ^~~~~~~~~~~~~ compilation terminated. configure:14312: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include configure:14333: result: no configure:14366: checking for strstream.h configure:14374: result: no configure:14233: checking strstrea.h usability configure:14250: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:65:10: fatal error: strstrea.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. configure:14256: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14287: result: no configure:14291: checking strstrea.h presence configure:14306: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:32:10: fatal error: strstrea.h: No such file or directory #include ^~~~~~~~~~~~ compilation terminated. configure:14312: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include configure:14333: result: no configure:14366: checking for strstrea.h configure:14374: result: no configure:14395: checking for inttypes.h configure:14401: result: yes configure:14405: checking limits usability configure:14422: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14428: $? = 0 configure:14435: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14438: $? = 0 configure:14445: test -s conftest.o configure:14448: $? = 0 configure:14459: result: yes configure:14463: checking limits presence configure:14478: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14484: $? = 0 configure:14505: result: yes configure:14538: checking for limits configure:14546: result: yes configure:14405: checking limits.h usability configure:14422: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14428: $? = 0 configure:14435: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14438: $? = 0 configure:14445: test -s conftest.o configure:14448: $? = 0 configure:14459: result: yes configure:14463: checking limits.h presence configure:14478: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14484: $? = 0 configure:14505: result: yes configure:14538: checking for limits.h configure:14546: result: yes configure:14566: checking for unistd.h configure:14572: result: yes configure:14745: checking windows.h usability configure:14762: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:69:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:14768: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14799: result: no configure:14803: checking windows.h presence configure:14818: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:36:10: fatal error: windows.h: No such file or directory #include ^~~~~~~~~~~ compilation terminated. configure:14824: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:14845: result: no configure:14878: checking for windows.h configure:14886: result: no configure:15018: checking for wstring configure:15045: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:15051: $? = 0 configure:15058: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15061: $? = 0 configure:15068: test -s conftest configure:15071: $? = 0 configure:15084: result: yes configure:15094: checking for socklen_t configure:15126: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15132: $? = 0 configure:15139: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15142: $? = 0 configure:15149: test -s conftest.o configure:15152: $? = 0 configure:15164: result: yes configure:15203: checking atomic.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:74:10: fatal error: atomic.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15226: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15257: result: no configure:15261: checking atomic.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:41:10: fatal error: atomic.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15282: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | /* end confdefs.h. */ | #include configure:15303: result: no configure:15336: checking for atomic.h configure:15344: result: no configure:15203: checking cpuid.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking cpuid.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for cpuid.h configure:15344: result: yes configure:15203: checking dlfcn.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking dlfcn.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for dlfcn.h configure:15344: result: yes configure:15203: checking ieeefp.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:76:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15226: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15257: result: no configure:15261: checking ieeefp.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:43:10: fatal error: ieeefp.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15282: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:15303: result: no configure:15336: checking for ieeefp.h configure:15344: result: no configure:15203: checking poll.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking poll.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for poll.h configure:15344: result: yes configure:15203: checking sys/epoll.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking sys/epoll.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for sys/epoll.h configure:15344: result: yes configure:15203: checking sys/mount.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking sys/mount.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for sys/mount.h configure:15344: result: yes configure:15203: checking sys/sockio.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:79:10: fatal error: sys/sockio.h: No such file or directory #include ^~~~~~~~~~~~~~ compilation terminated. configure:15226: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15257: result: no configure:15261: checking sys/sockio.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:46:10: fatal error: sys/sockio.h: No such file or directory #include ^~~~~~~~~~~~~~ compilation terminated. configure:15282: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | /* end confdefs.h. */ | #include configure:15303: result: no configure:15336: checking for sys/sockio.h configure:15344: result: no configure:15203: checking sys/statvfs.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking sys/statvfs.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for sys/statvfs.h configure:15344: result: yes configure:15203: checking sys/sysinfo.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking sys/sysinfo.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for sys/sysinfo.h configure:15344: result: yes configure:15203: checking sys/vfs.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking sys/vfs.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for sys/vfs.h configure:15344: result: yes configure:15203: checking x86intrin.h usability configure:15220: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15226: $? = 0 configure:15233: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15236: $? = 0 configure:15243: test -s conftest.o configure:15246: $? = 0 configure:15257: result: yes configure:15261: checking x86intrin.h presence configure:15276: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15282: $? = 0 configure:15303: result: yes configure:15336: checking for x86intrin.h configure:15344: result: yes configure:15578: checking alloca.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking alloca.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for alloca.h configure:15719: result: yes configure:15578: checking arpa/inet.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking arpa/inet.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for arpa/inet.h configure:15719: result: yes configure:15578: checking dirent.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking dirent.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for dirent.h configure:15719: result: yes configure:15578: checking errno.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking errno.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for errno.h configure:15719: result: yes configure:15578: checking fcntl.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking fcntl.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for fcntl.h configure:15719: result: yes configure:15578: checking getopt.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking getopt.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for getopt.h configure:15719: result: yes configure:15578: checking langinfo.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking langinfo.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for langinfo.h configure:15719: result: yes configure:15578: checking libgen.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking libgen.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for libgen.h configure:15719: result: yes configure:15578: checking locale.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking locale.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for locale.h configure:15719: result: yes configure:15578: checking malloc.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking malloc.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for malloc.h configure:15719: result: yes configure:15578: checking net/inet/in.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:93:10: fatal error: net/inet/in.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. configure:15601: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15632: result: no configure:15636: checking net/inet/in.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:60:10: fatal error: net/inet/in.h: No such file or directory #include ^~~~~~~~~~~~~~~ compilation terminated. configure:15657: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include configure:15678: result: no configure:15711: checking for net/inet/in.h configure:15719: result: no configure:15578: checking netdb.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking netdb.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for netdb.h configure:15719: result: yes configure:15578: checking netinet/in.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking netinet/in.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for netinet/in.h configure:15719: result: yes configure:15578: checking netinet/tcp.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking netinet/tcp.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for netinet/tcp.h configure:15719: result: yes configure:15578: checking paths.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking paths.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for paths.h configure:15719: result: yes configure:15578: checking select.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:97:10: fatal error: select.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15601: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15632: result: no configure:15636: checking select.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:64:10: fatal error: select.h: No such file or directory #include ^~~~~~~~~~ compilation terminated. configure:15657: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | /* end confdefs.h. */ | #include configure:15678: result: no configure:15711: checking for select.h configure:15719: result: no configure:15578: checking signal.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking signal.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for signal.h configure:15719: result: yes configure:15578: checking stdbool.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking stdbool.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for stdbool.h configure:15719: result: yes configure:15578: checking stddef.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking stddef.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for stddef.h configure:15719: result: yes configure:15578: checking sys/eventfd.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/eventfd.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/eventfd.h configure:15719: result: yes configure:15578: checking sys/file.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/file.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/file.h configure:15719: result: yes configure:15578: checking sys/ioctl.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/ioctl.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/ioctl.h configure:15719: result: yes configure:15578: checking sys/param.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/param.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/param.h configure:15719: result: yes configure:15578: checking sys/resource.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/resource.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/resource.h configure:15719: result: yes configure:15578: checking sys/select.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/select.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/select.h configure:15719: result: yes configure:15578: checking sys/socket.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/socket.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/socket.h configure:15719: result: yes configure:15578: checking sys/time.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/time.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/time.h configure:15719: result: yes configure:15578: checking sys/wait.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking sys/wait.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for sys/wait.h configure:15719: result: yes configure:15578: checking valgrind/memcheck.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:109:10: fatal error: valgrind/memcheck.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15601: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15632: result: no configure:15636: checking valgrind/memcheck.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:76:10: fatal error: valgrind/memcheck.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15657: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | /* end confdefs.h. */ | #include configure:15678: result: no configure:15711: checking for valgrind/memcheck.h configure:15719: result: no configure:15578: checking wchar.h usability configure:15595: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15601: $? = 0 configure:15608: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15611: $? = 0 configure:15618: test -s conftest.o configure:15621: $? = 0 configure:15632: result: yes configure:15636: checking wchar.h presence configure:15651: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15657: $? = 0 configure:15678: result: yes configure:15711: checking for wchar.h configure:15719: result: yes configure:15732: checking whether time.h and sys/time.h may both be included configure:15762: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15768: $? = 0 configure:15775: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15778: $? = 0 configure:15785: test -s conftest.o configure:15788: $? = 0 configure:15800: result: yes configure:15826: checking cxxabi.h usability configure:15843: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15849: $? = 0 configure:15856: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15859: $? = 0 configure:15866: test -s conftest.o configure:15869: $? = 0 configure:15880: result: yes configure:15884: checking cxxabi.h presence configure:15899: /usr/bin/g++ -std=gnu++11 -msse4.2 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15905: $? = 0 configure:15926: result: yes configure:15959: checking for cxxabi.h configure:15967: result: yes configure:15981: checking whether abi::__cxa_demangle is declared configure:16012: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:84:12: warning: extra tokens at end of #ifndef directive #ifndef abi::__cxa_demangle ^~ configure:16018: $? = 0 configure:16025: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16028: $? = 0 configure:16035: test -s conftest.o configure:16038: $? = 0 configure:16050: result: yes configure:16064: checking for gethostbyname_r configure:16097: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:89:57: error: cannot convert 'int*' to 'hostent**' hp = gethostbyname_r("", hp, buf, sizeof(buf), &err); ^~~~ In file included from conftest.cpp:80: /usr/include/netdb.h:180:36: note: initializing argument 5 of 'int gethostbyname_r(const char*, hostent*, char*, size_t, hostent**, int*)' struct hostent **__restrict __result, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ conftest.cpp:85:26: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &gethostbyname_r; ^~~~~ configure:16103: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | /* end confdefs.h. */ | #include | int | main () | { | | void* dummy = (void*) &gethostbyname_r; | char buf[1024]; | int err; | struct hostent* hp = 0; | hp = gethostbyname_r("", hp, buf, sizeof(buf), &err); | | ; | return 0; | } configure:16165: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:85:26: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &gethostbyname_r; ^~~~~ configure:16171: $? = 0 configure:16178: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16181: $? = 0 configure:16188: test -s conftest.o configure:16191: $? = 0 configure:16207: result: 6 configure:16221: checking for gethostbyaddr_r configure:16260: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:96:53: error: cannot convert 'int*' to 'hostent**' hp, buf, sizeof(buf), &err); ^~~~ In file included from conftest.cpp:82: /usr/include/netdb.h:174:36: note: initializing argument 7 of 'int gethostbyaddr_r(const void*, __socklen_t, int, hostent*, char*, size_t, hostent**, int*)' struct hostent **__restrict __result, ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ conftest.cpp:90:16: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &gethostbyaddr_r; ^~~~~ configure:16266: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | /* end confdefs.h. */ | | #include | #include | #include | | int | main () | { | | void* dummy = (void*) &gethostbyaddr_r; | char buf[1024]; | int err; | unsigned int host; | struct hostent* hp = 0; | hp = gethostbyaddr_r((char *) &host, sizeof(host), AF_INET, | hp, buf, sizeof(buf), &err); | | ; | return 0; | } configure:16334: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:90:16: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &gethostbyaddr_r; ^~~~~ conftest.cpp:95:14: warning: unused variable 'res' [-Wunused-variable] int res = gethostbyaddr_r((char *) &host, sizeof(host), AF_INET, ^~~ configure:16340: $? = 0 configure:16347: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16350: $? = 0 configure:16357: test -s conftest.o configure:16360: $? = 0 configure:16376: result: 8 configure:16390: checking for getservbyname_r configure:16423: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:91:59: error: too few arguments to function 'int getservbyname_r(const char*, const char*, servent*, char*, size_t, servent**)' sp = getservbyname_r("", "", sp, buf, sizeof(buf)); ^ In file included from conftest.cpp:82: /usr/include/netdb.h:310:12: note: declared here extern int getservbyname_r (const char *__restrict __name, ^~~~~~~~~~~~~~~ conftest.cpp:87:26: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &getservbyname_r; ^~~~~ conftest.cpp:89:26: warning: unused variable 'err' [-Wunused-variable] int err; ^~~ configure:16429: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | /* end confdefs.h. */ | #include | int | main () | { | | void* dummy = (void*) &getservbyname_r; | char buf[1024]; | int err; | struct servent* sp = 0; | sp = getservbyname_r("", "", sp, buf, sizeof(buf)); | | ; | return 0; | } configure:16491: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:87:26: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &getservbyname_r; ^~~~~ conftest.cpp:89:26: warning: variable 'err' set but not used [-Wunused-but-set-variable] int err; ^~~ configure:16497: $? = 0 configure:16504: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16507: $? = 0 configure:16514: test -s conftest.o configure:16517: $? = 0 configure:16533: result: 6 configure:16547: checking for getpwuid_r configure:16578: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:90:65: error: too few arguments to function 'int getpwuid_r(__uid_t, passwd*, char*, size_t, passwd**)' char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; ^ In file included from conftest.cpp:84: /usr/include/pwd.h:145:12: note: declared here extern int getpwuid_r (__uid_t __uid, ^~~~~~~~~~ conftest.cpp:90:16: warning: unused variable 'dir' [-Wunused-variable] char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; ^~~ configure:16584: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | /* end confdefs.h. */ | #include | #include | int | main () | { | struct passwd bpw; | char buf[1024]; | char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; | | ; | return 0; | } configure:16641: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:16647: $? = 0 configure:16654: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16657: $? = 0 configure:16664: test -s conftest.o configure:16667: $? = 0 configure:16680: result: 5 configure:16693: checking for getlogin_r configure:16720: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:16726: $? = 0 configure:16733: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16736: $? = 0 configure:16743: test -s conftest.o configure:16746: $? = 0 configure:16758: result: yes configure:16781: checking for localtime_r configure:16837: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:16843: $? = 0 configure:16850: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16853: $? = 0 configure:16860: test -s conftest configure:16863: $? = 0 configure:16877: result: yes configure:16781: checking for pthread_setconcurrency configure:16837: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:16843: $? = 0 configure:16850: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16853: $? = 0 configure:16860: test -s conftest configure:16863: $? = 0 configure:16877: result: yes configure:16781: checking for pthread_atfork configure:16837: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:16843: $? = 0 configure:16850: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16853: $? = 0 configure:16860: test -s conftest configure:16863: $? = 0 configure:16877: result: yes configure:16888: checking return type of localtime_r configure:16917: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c: In function 'main': conftest.c:95:20: warning: unused variable 'y' [-Wunused-variable] int y = localtime_r(&t, &mytm)->tm_year; ^ configure:16923: $? = 0 configure:16930: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16933: $? = 0 configure:16940: test -s conftest.o configure:16943: $? = 0 configure:16955: result: struct configure:16972: checking whether pthread mutexes are available configure:16999: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17005: $? = 0 configure:17012: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17015: $? = 0 configure:17022: test -s conftest configure:17025: $? = 0 configure:17038: result: yes configure:17055: checking for vprintf configure:17111: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:113:6: warning: conflicting types for built-in function 'vprintf' [-Wbuiltin-declaration-mismatch] char vprintf (); ^~~~~~~ configure:17117: $? = 0 configure:17124: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17127: $? = 0 configure:17134: test -s conftest configure:17137: $? = 0 configure:17151: result: yes configure:17158: checking for _doprnt configure:17214: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccN05Q6Z.o: in function `main': ./c++/conftest.c:125: undefined reference to `_doprnt' collect2: error: ld returned 1 exit status configure:17220: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | /* Define _doprnt to an innocuous variant, in case declares _doprnt. | For example, HP-UX 11i declares gettimeofday. */ | #define _doprnt innocuous__doprnt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _doprnt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _doprnt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _doprnt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__doprnt || defined __stub____doprnt | choke me | #endif | | int | main () | { | return _doprnt (); | ; | return 0; | } configure:17253: result: no configure:17328: checking for alarm configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for asprintf configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for atoll configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for basename configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for dbopen configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/cc5k6J2p.o: in function `main': ./c++/conftest.c:129: undefined reference to `dbopen' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | /* end confdefs.h. */ | /* Define dbopen to an innocuous variant, in case declares dbopen. | For example, HP-UX 11i declares gettimeofday. */ | #define dbopen innocuous_dbopen | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char dbopen (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef dbopen | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dbopen (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_dbopen || defined __stub___dbopen | choke me | #endif | | int | main () | { | return dbopen (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for daemon configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for euidaccess configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for eventfd configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for fseeko configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for fstat configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getgrouplist configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for gethrtime configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/cc4yyPYN.o: in function `main': ./c++/conftest.c:135: undefined reference to `gethrtime' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | /* end confdefs.h. */ | /* Define gethrtime to an innocuous variant, in case declares gethrtime. | For example, HP-UX 11i declares gettimeofday. */ | #define gethrtime innocuous_gethrtime | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gethrtime (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gethrtime | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gethrtime (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_gethrtime || defined __stub___gethrtime | choke me | #endif | | int | main () | { | return gethrtime (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for getopt configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getpagesize configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getpass configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getpassphrase configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccwhDKSa.o: in function `main': ./c++/conftest.c:138: undefined reference to `getpassphrase' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | /* end confdefs.h. */ | /* Define getpassphrase to an innocuous variant, in case declares getpassphrase. | For example, HP-UX 11i declares gettimeofday. */ | #define getpassphrase innocuous_getpassphrase | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getpassphrase (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getpassphrase | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getpassphrase (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getpassphrase || defined __stub___getpassphrase | choke me | #endif | | int | main () | { | return getpassphrase (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for getpwuid configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getrusage configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for gettimeofday configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for getuid configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for lchown configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for lutimes configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for malloc_options configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccdEdU9G.o: in function `main': ./c++/conftest.c:144: undefined reference to `malloc_options' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | /* end confdefs.h. */ | /* Define malloc_options to an innocuous variant, in case declares malloc_options. | For example, HP-UX 11i declares gettimeofday. */ | #define malloc_options innocuous_malloc_options | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char malloc_options (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef malloc_options | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc_options (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_malloc_options || defined __stub___malloc_options | choke me | #endif | | int | main () | { | return malloc_options (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for memrchr configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for nl_langinfo configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for poll configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for putenv configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for readpassphrase configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccNGJlp0.o: in function `main': ./c++/conftest.c:148: undefined reference to `readpassphrase' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | /* end confdefs.h. */ | /* Define readpassphrase to an innocuous variant, in case declares readpassphrase. | For example, HP-UX 11i declares gettimeofday. */ | #define readpassphrase innocuous_readpassphrase | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char readpassphrase (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef readpassphrase | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readpassphrase (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_readpassphrase || defined __stub___readpassphrase | choke me | #endif | | int | main () | { | return readpassphrase (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for readv configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for select configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for setenv configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for setitimer configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for setrlimit configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for snprintf configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:142:6: warning: conflicting types for built-in function 'snprintf' [-Wbuiltin-declaration-mismatch] char snprintf (); ^~~~~~~~ configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for statfs configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for statvfs configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strcasecmp configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:145:6: warning: conflicting types for built-in function 'strcasecmp' [-Wbuiltin-declaration-mismatch] char strcasecmp (); ^~~~~~~~~~ configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strdup configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:146:6: warning: conflicting types for built-in function 'strdup' [-Wbuiltin-declaration-mismatch] char strdup (); ^~~~~~ configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strlcat configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/cciMMg7K.o: in function `main': ./c++/conftest.c:158: undefined reference to `strlcat' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | /* end confdefs.h. */ | /* Define strlcat to an innocuous variant, in case declares strlcat. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcat innocuous_strlcat | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcat (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcat | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcat (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcat || defined __stub___strlcat | choke me | #endif | | int | main () | { | return strlcat (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for strlcpy configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccyOFKtP.o: in function `main': ./c++/conftest.c:158: undefined reference to `strlcpy' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | /* end confdefs.h. */ | /* Define strlcpy to an innocuous variant, in case declares strlcpy. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcpy innocuous_strlcpy | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcpy (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcpy | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcpy (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcpy || defined __stub___strlcpy | choke me | #endif | | int | main () | { | return strlcpy (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for strndup configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:147:6: warning: conflicting types for built-in function 'strndup' [-Wbuiltin-declaration-mismatch] char strndup (); ^~~~~~~ configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strnlen configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strsep configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for strtok_r configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for sysmp configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccjiugJi.o: in function `main': ./c++/conftest.c:162: undefined reference to `sysmp' collect2: error: ld returned 1 exit status configure:17390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | /* end confdefs.h. */ | /* Define sysmp to an innocuous variant, in case declares sysmp. | For example, HP-UX 11i declares gettimeofday. */ | #define sysmp innocuous_sysmp | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sysmp (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sysmp | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sysmp (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sysmp || defined __stub___sysmp | choke me | #endif | | int | main () | { | return sysmp (); | ; | return 0; | } configure:17424: result: no configure:17328: checking for timegm configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for usleep configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for utimes configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for vasprintf configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for vsnprintf configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c:155:6: warning: conflicting types for built-in function 'vsnprintf' [-Wbuiltin-declaration-mismatch] char vsnprintf (); ^~~~~~~~~ configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17328: checking for writev configure:17384: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 configure:17390: $? = 0 configure:17397: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17400: $? = 0 configure:17407: test -s conftest configure:17410: $? = 0 configure:17424: result: yes configure:17441: checking return type of signal handlers configure:17469: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:140:25: error: void value not ignored as it ought to be return *(signal (0, 0)) (0) == 1; ~~~~~~~~~~~~~~~~^~~ configure:17475: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | return *(signal (0, 0)) (0) == 1; | ; | return 0; | } configure:17507: result: void configure:17516: checking whether select updates the timeout when interrupted configure:17563: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:17566: $? = 0 configure:17572: ./conftest configure:17575: $? = 0 configure:17591: result: yes configure:17606: checking whether strcasecmp treats letters as lowercase configure:17635: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:17638: $? = 0 configure:17644: ./conftest configure:17647: $? = 0 configure:17663: result: yes configure:17674: checking for Linux-like sysinfo with 1 arg configure:17704: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:142:16: warning: unused variable 'dummy' [-Wunused-variable] void* dummy = (void*) &sysinfo; ^~~~~ conftest.cpp:144:14: warning: unused variable 'retval' [-Wunused-variable] int retval = sysinfo(info); ^~~~~~ configure:17710: $? = 0 configure:17717: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:17720: $? = 0 configure:17727: test -s conftest.o configure:17730: $? = 0 configure:17742: result: yes configure:17757: checking for getloadavg configure:17813: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:17819: $? = 0 configure:17826: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:17829: $? = 0 configure:17836: test -s conftest configure:17839: $? = 0 configure:17853: result: yes configure:17866: checking for readdir_r configure:17893: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:143:61: warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated [-Wdeprecated-declarations] DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); ^ In file included from /usr/include/features.h:424, from /usr/include/dirent.h:25, from conftest.cpp:139: /usr/include/dirent.h:189:12: note: declared here extern int __REDIRECT (readdir_r, ^~~~~~~~~~ conftest.cpp:143:61: warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated [-Wdeprecated-declarations] DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); ^ In file included from /usr/include/features.h:424, from /usr/include/dirent.h:25, from conftest.cpp:139: /usr/include/dirent.h:189:12: note: declared here extern int __REDIRECT (readdir_r, ^~~~~~~~~~ conftest.cpp:143:42: warning: 'entry' is used uninitialized in this function [-Wuninitialized] DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ conftest.cpp:143:42: warning: 'dir' is used uninitialized in this function [-Wuninitialized] configure:17899: $? = 0 configure:17906: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:17909: $? = 0 configure:17916: test -s conftest.o configure:17919: $? = 0 configure:17991: result: 3 configure:18002: checking whether stdio supports locking configure:18031: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:144:5: warning: variable 'c' set but not used [-Wunused-but-set-variable] int c; ^ configure:18037: $? = 0 configure:18044: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18047: $? = 0 configure:18054: test -s conftest configure:18057: $? = 0 configure:18070: result: yes configure:18081: checking for an ANSI C-conforming const configure:18156: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:18162: $? = 0 configure:18169: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18172: $? = 0 configure:18179: test -s conftest.o configure:18182: $? = 0 configure:18194: result: yes configure:18206: checking whether byte ordering is bigendian configure:18238: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:18244: $? = 0 configure:18251: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18254: $? = 0 configure:18261: test -s conftest.o configure:18264: $? = 0 configure:18293: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:148:6: error: 'big' was not declared in this scope not big endian ^~~ configure:18299: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | #if BYTE_ORDER != BIG_ENDIAN | not big endian | #endif | | ; | return 0; | } configure:18473: result: no configure:18493: checking whether char is unsigned configure:18521: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:177:12: warning: variable 'test_array' set but not used [-Wunused-but-set-variable] static int test_array [1 - 2 * !(((char) -1) < 0)]; ^~~~~~~~~~ configure:18527: $? = 0 configure:18534: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18537: $? = 0 configure:18544: test -s conftest.o configure:18547: $? = 0 configure:18559: result: no configure:18568: checking for char configure:18598: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:18604: $? = 0 configure:18611: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18614: $? = 0 configure:18621: test -s conftest.o configure:18624: $? = 0 configure:18636: result: yes configure:18639: checking size of char configure:19027: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:19030: $? = 0 configure:19036: ./conftest configure:19039: $? = 0 configure:19061: result: 1 configure:19068: checking for double configure:19098: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:19104: $? = 0 configure:19111: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:19114: $? = 0 configure:19121: test -s conftest.o configure:19124: $? = 0 configure:19136: result: yes configure:19139: checking size of double configure:19527: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:19530: $? = 0 configure:19536: ./conftest configure:19539: $? = 0 configure:19561: result: 8 configure:19568: checking for float configure:19598: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:19604: $? = 0 configure:19611: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:19614: $? = 0 configure:19621: test -s conftest.o configure:19624: $? = 0 configure:19636: result: yes configure:19639: checking size of float configure:20027: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:20030: $? = 0 configure:20036: ./conftest configure:20039: $? = 0 configure:20061: result: 4 configure:20068: checking for int configure:20098: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:20104: $? = 0 configure:20111: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:20114: $? = 0 configure:20121: test -s conftest.o configure:20124: $? = 0 configure:20136: result: yes configure:20139: checking size of int configure:20527: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:20530: $? = 0 configure:20536: ./conftest configure:20539: $? = 0 configure:20561: result: 4 configure:20568: checking for long configure:20598: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:20604: $? = 0 configure:20611: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:20614: $? = 0 configure:20621: test -s conftest.o configure:20624: $? = 0 configure:20636: result: yes configure:20639: checking size of long configure:21027: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:21030: $? = 0 configure:21036: ./conftest configure:21039: $? = 0 configure:21061: result: 8 configure:21068: checking for long double configure:21098: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:21104: $? = 0 configure:21111: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:21114: $? = 0 configure:21121: test -s conftest.o configure:21124: $? = 0 configure:21136: result: yes configure:21139: checking size of long double configure:21527: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:21530: $? = 0 configure:21536: ./conftest configure:21539: $? = 0 configure:21561: result: 16 configure:21568: checking for long long configure:21598: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:21604: $? = 0 configure:21611: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:21614: $? = 0 configure:21621: test -s conftest.o configure:21624: $? = 0 configure:21636: result: yes configure:21639: checking size of long long configure:22027: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:22030: $? = 0 configure:22036: ./conftest configure:22039: $? = 0 configure:22061: result: 8 configure:22068: checking for short configure:22098: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:22104: $? = 0 configure:22111: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:22114: $? = 0 configure:22121: test -s conftest.o configure:22124: $? = 0 configure:22136: result: yes configure:22139: checking size of short configure:22527: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:22530: $? = 0 configure:22536: ./conftest configure:22539: $? = 0 configure:22561: result: 2 configure:22568: checking for void* configure:22598: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:22604: $? = 0 configure:22611: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:22614: $? = 0 configure:22621: test -s conftest.o configure:22624: $? = 0 configure:22636: result: yes configure:22639: checking size of void* configure:23027: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:23030: $? = 0 configure:23036: ./conftest configure:23039: $? = 0 configure:23061: result: 8 configure:23068: checking for wchar_t configure:23099: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:23105: $? = 0 configure:23112: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:23115: $? = 0 configure:23122: test -s conftest.o configure:23125: $? = 0 configure:23137: result: yes configure:23140: checking size of wchar_t configure:23534: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:23537: $? = 0 configure:23543: ./conftest configure:23546: $? = 0 configure:23568: result: 4 configure:23575: checking for __int64 configure:23605: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:184:9: error: '__int64' does not name a type; did you mean '__int64_t'? typedef __int64 ac__type_new_; ^~~~~~~ __int64_t conftest.cpp: In function 'int main()': conftest.cpp:188:6: error: 'ac__type_new_' was not declared in this scope if ((ac__type_new_ *) 0) ^~~~~~~~~~~~~ conftest.cpp:188:21: error: expected primary-expression before ')' token if ((ac__type_new_ *) 0) ^ conftest.cpp:188:22: error: expected ')' before numeric constant if ((ac__type_new_ *) 0) ~ ^~ ) conftest.cpp:190:13: error: 'ac__type_new_' was not declared in this scope if (sizeof (ac__type_new_)) ^~~~~~~~~~~~~ configure:23611: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | typedef __int64 ac__type_new_; | int | main () | { | if ((ac__type_new_ *) 0) | return 0; | if (sizeof (ac__type_new_)) | return 0; | ; | return 0; | } configure:23643: result: no configure:23646: checking size of __int64 configure:24068: result: 0 configure:24075: checking for intptr_t configure:24105: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24111: $? = 0 configure:24118: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24121: $? = 0 configure:24128: test -s conftest.o configure:24131: $? = 0 configure:24143: result: yes configure:24153: checking for uintptr_t configure:24183: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24189: $? = 0 configure:24196: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24199: $? = 0 configure:24206: test -s conftest.o configure:24209: $? = 0 configure:24221: result: yes configure:24233: checking for struct sockaddr_in.sin_len configure:24263: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:161:13: error: 'struct sockaddr_in' has no member named 'sin_len'; did you mean 'sin_zero'? if (ac_aggr.sin_len) ^~~~~~~ sin_zero configure:24269: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | static struct sockaddr_in ac_aggr; | if (ac_aggr.sin_len) | return 0; | ; | return 0; | } configure:24321: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:161:20: error: 'struct sockaddr_in' has no member named 'sin_len'; did you mean 'sin_zero'? if (sizeof ac_aggr.sin_len) ^~~~~~~ sin_zero configure:24327: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | static struct sockaddr_in ac_aggr; | if (sizeof ac_aggr.sin_len) | return 0; | ; | return 0; | } configure:24362: result: no configure:24373: checking for struct tm.tm_zone configure:24402: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24408: $? = 0 configure:24415: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24418: $? = 0 configure:24425: test -s conftest.o configure:24428: $? = 0 configure:24500: result: yes configure:24510: checking for struct tm.__tm_zone configure:24539: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:161:13: error: 'struct tm' has no member named '__tm_zone'; did you mean 'tm_zone'? if (ac_aggr.__tm_zone) ^~~~~~~~~ tm_zone configure:24545: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | /* end confdefs.h. */ | #include | | int | main () | { | static struct tm ac_aggr; | if (ac_aggr.__tm_zone) | return 0; | ; | return 0; | } configure:24596: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:161:20: error: 'struct tm' has no member named '__tm_zone'; did you mean 'tm_zone'? if (sizeof ac_aggr.__tm_zone) ^~~~~~~~~ tm_zone configure:24602: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | /* end confdefs.h. */ | #include | | int | main () | { | static struct tm ac_aggr; | if (sizeof ac_aggr.__tm_zone) | return 0; | ; | return 0; | } configure:24637: result: no configure:24650: checking whether function prototypes can use throw(...) configure:24678: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24684: $? = 0 configure:24691: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24694: $? = 0 configure:24701: test -s conftest.o configure:24704: $? = 0 configure:24716: result: yes configure:24727: checking for ios(_base)::register_callback configure:24753: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24759: $? = 0 configure:24766: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24769: $? = 0 configure:24776: test -s conftest.o configure:24779: $? = 0 configure:24791: result: yes configure:24802: checking for SysV semaphores configure:24830: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:162:15: warning: variable 'buf' set but not used [-Wunused-but-set-variable] struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT); ^~~ conftest.cpp:162:24: warning: unused variable 'id' [-Wunused-variable] struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT); ^~ configure:24836: $? = 0 configure:24843: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24846: $? = 0 configure:24853: test -s conftest configure:24856: $? = 0 configure:24869: result: yes configure:24879: checking for union semun configure:24911: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:167:26: error: invalid application of 'sizeof' to incomplete type 'ac__type_new_' {aka 'semun'} if (sizeof (ac__type_new_)) ^ configure:24917: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | /* end confdefs.h. */ | #include | #include | | typedef union semun ac__type_new_; | int | main () | { | if ((ac__type_new_ *) 0) | return 0; | if (sizeof (ac__type_new_)) | return 0; | ; | return 0; | } configure:24949: result: no configure:24961: checking which way the stack grows configure:24990: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:24993: $? = 0 configure:24999: ./conftest configure:25002: $? = 0 configure:25018: result: up configure:25040: checking whether the preprocessor supports C99-style variadic macros configure:25069: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25075: $? = 0 configure:25082: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25085: $? = 0 configure:25092: test -s conftest.o configure:25095: $? = 0 configure:25107: result: yes configure:25117: checking whether the preprocessor supports GNU-style variadic macros configure:25146: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:160:17: warning: ISO C does not permit named variadic macros [-Wvariadic-macros] #define foo(args...) 1 ^~~ configure:25152: $? = 0 configure:25159: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25162: $? = 0 configure:25169: test -s conftest.o configure:25172: $? = 0 configure:25184: result: yes configure:25217: checking syntax for marking deprecated functions configure:25243: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:165:3: warning: 'void f()' is deprecated [-Wdeprecated-declarations] f(); ^ conftest.cpp:161:52: note: declared here void f(void) __attribute__((__deprecated__)); void f(void) { } ^ conftest.cpp:165:3: warning: 'void f()' is deprecated [-Wdeprecated-declarations] f(); ^ conftest.cpp:161:52: note: declared here void f(void) __attribute__((__deprecated__)); void f(void) { } ^ configure:25249: $? = 0 configure:25256: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25259: $? = 0 configure:25266: test -s conftest.o configure:25269: $? = 0 configure:25281: result: __attribute__((__deprecated__)) configure:25297: checking how to force inlining configure:25320: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:162:16: error: expected ';' before 'int' __always_inline int f(void) { return 0; } ^~~~ ; configure:25326: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | /* end confdefs.h. */ | __always_inline int f(void) { return 0; } configure:25320: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25326: $? = 0 configure:25333: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25336: $? = 0 configure:25343: test -s conftest.o configure:25346: $? = 0 configure:25359: result: inline __attribute__((always_inline)) configure:25369: checking whether the C compiler supports __attribute__((destructor)) configure:25395: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25401: $? = 0 configure:25408: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25411: $? = 0 configure:25418: test -s conftest.o configure:25421: $? = 0 configure:25433: result: yes configure:25448: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default"))) configure:25512: result: unnecessary configure:25522: checking whether the C compiler supports C99 restrict configure:25544: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25550: $? = 0 configure:25557: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25560: $? = 0 configure:25567: test -s conftest.o configure:25570: $? = 0 configure:25583: result: __restrict__ configure:25606: checking whether the C++ compiler supports C99 restrict configure:25628: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:25634: $? = 0 configure:25641: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25644: $? = 0 configure:25651: test -s conftest.o configure:25654: $? = 0 configure:25667: result: __restrict__ configure:25684: checking syntax for marking functions that never return configure:25710: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'void f()': conftest.cpp:168:60: warning: 'noreturn' function does return void f(void) __attribute__((__noreturn__)); void f(void) { } ^ configure:25716: $? = 0 configure:25723: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25726: $? = 0 configure:25733: test -s conftest.o configure:25736: $? = 0 configure:25748: result: __attribute__((__noreturn__)) configure:25758: checking syntax for marking functions whose result should be checked configure:25784: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:173:5: warning: unused variable 'status' [-Wunused-variable] int status = f(); ^~~~~~ configure:25790: $? = 0 configure:25797: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25800: $? = 0 configure:25807: test -s conftest.o configure:25810: $? = 0 configure:25822: result: __attribute__((warn_unused_result)) configure:25832: checking syntax for declaring thread-local variables configure:25861: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:174:21: warning: unused variable 'j' [-Wunused-variable] static __thread int j; ^ conftest.cpp: At global scope: conftest.cpp:174:21: warning: 'j' defined but not used [-Wunused-variable] configure:25867: $? = 0 configure:25874: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25877: $? = 0 configure:25884: test -s conftest.o configure:25887: $? = 0 configure:25900: result: __thread configure:25911: checking syntax for marking types as packed to save memory configure:25937: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:25943: $? = 0 configure:25950: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25953: $? = 0 configure:25960: test -s conftest.o configure:25963: $? = 0 configure:25975: result: __attribute__((__packed__)) configure:25986: checking whether FIONBIO requires BSD_COMP to be defined configure:26013: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:177:6: warning: unused variable 'request' [-Wunused-variable] int request = FIONBIO; ^~~~~~~ configure:26019: $? = 0 configure:26026: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26029: $? = 0 configure:26036: test -s conftest.o configure:26039: $? = 0 configure:26110: result: no configure:26120: checking whether INADDR_NONE is defined configure:26159: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:189:16: warning: unused variable 'addr' [-Wunused-variable] unsigned long addr = INADDR_NONE; ^~~~ configure:26165: $? = 0 configure:26172: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26175: $? = 0 configure:26182: test -s conftest.o configure:26185: $? = 0 configure:26197: result: yes configure:26207: checking whether unaligned reads are permissible configure:26240: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:26243: $? = 0 configure:26249: ./conftest ef012345 configure:26252: $? = 0 configure:26268: result: yes configure:26286: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic configure:26313: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c: In function 'main': conftest.c:178:17: warning: variable 'v3' set but not used [-Wunused-but-set-variable] TVector v1, v2, v3; v3 = f(v1, v2); ^~ conftest.c:178:27: warning: 'v1' is used uninitialized in this function [-Wuninitialized] TVector v1, v2, v3; v3 = f(v1, v2); ^~~~~~~~~ conftest.c:178:27: warning: 'v2' is used uninitialized in this function [-Wuninitialized] configure:26319: $? = 0 configure:26326: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26329: $? = 0 configure:26336: test -s conftest.o configure:26339: $? = 0 configure:26351: result: yes configure:26361: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations configure:26388: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -funsafe-math-optimizations -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26394: $? = 0 configure:26401: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26404: $? = 0 configure:26411: test -s conftest.o configure:26414: $? = 0 configure:26426: result: yes configure:26429: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -msse4.1 configure:26457: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -msse4.1 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 conftest.c: In function 'main': conftest.c:179:12: warning: statement with no effect [-Wunused-value] __builtin_ia32_shufpd(v, v, 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ conftest.c:179:12: warning: 'v' is used uninitialized in this function [-Wuninitialized] __builtin_ia32_shufpd(v, v, 1); ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ configure:26463: $? = 0 configure:26470: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26473: $? = 0 configure:26480: test -s conftest configure:26483: $? = 0 configure:26496: result: yes configure:26499: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -maes configure:26530: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -maes -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26536: $? = 0 configure:26543: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26546: $? = 0 configure:26553: test -s conftest.o configure:26556: $? = 0 configure:26568: result: yes configure:26575: checking whether /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always configure:26602: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -fdiagnostics-color=always -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26608: $? = 0 configure:26615: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26618: $? = 0 configure:26625: test -s conftest.o configure:26628: $? = 0 configure:26640: result: yes configure:26674: checking whether /usr/bin/g++ -std=gnu++11 -msse4.2 supports __builtin_bswap32 configure:26700: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:26706: $? = 0 configure:26713: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26716: $? = 0 configure:26723: test -s conftest configure:26726: $? = 0 configure:26739: result: yes configure:26749: checking whether /usr/bin/g++ -std=gnu++11 -msse4.2 supports __builtin_expect configure:26775: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 configure:26781: $? = 0 configure:26788: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26791: $? = 0 configure:26798: test -s conftest configure:26801: $? = 0 configure:26814: result: yes configure:26828: checking whether in-house NCBI resources are available configure:26837: result: no configure:26843: checking for gethostbyname in -lnsl configure:26878: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 configure:26884: $? = 0 configure:26891: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26894: $? = 0 configure:26901: test -s conftest configure:26904: $? = 0 configure:26918: result: yes configure:26926: checking for connect in -lsocket configure:26961: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lsocket -lm -lpthread >&5 /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status configure:26967: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char connect (); | int | main () | { | return connect (); | ; | return 0; | } configure:27001: result: no configure:27010: checking for res_search in -lresolv configure:27039: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lresolv -lnsl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:181:14: warning: unused variable 'st' [-Wunused-variable] int st = res_search("foo.bar", 1, 1, ans, sizeof(ans)); ^~ configure:27045: $? = 0 configure:27052: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27055: $? = 0 configure:27062: test -s conftest configure:27065: $? = 0 configure:27079: result: yes configure:27093: checking for inet_ntoa_r configure:27149: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc3IRTBq.o: in function `main': ./c++/conftest.cpp:210: undefined reference to `inet_ntoa_r' collect2: error: ld returned 1 exit status configure:27155: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | /* Define inet_ntoa_r to an innocuous variant, in case declares inet_ntoa_r. | For example, HP-UX 11i declares gettimeofday. */ | #define inet_ntoa_r innocuous_inet_ntoa_r | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char inet_ntoa_r (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef inet_ntoa_r | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char inet_ntoa_r (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_inet_ntoa_r || defined __stub___inet_ntoa_r | choke me | #endif | | int | main () | { | return inet_ntoa_r (); | ; | return 0; | } configure:27189: result: no configure:27199: checking for getaddrinfo configure:27225: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:180:32: warning: 'p' is used uninitialized in this function [-Wuninitialized] struct addrinfo *p; getaddrinfo("foo", "bar", p, &p); ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ configure:27231: $? = 0 configure:27238: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27241: $? = 0 configure:27248: test -s conftest configure:27251: $? = 0 configure:27264: result: yes configure:27272: checking for getnameinfo configure:27301: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27307: $? = 0 configure:27314: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27317: $? = 0 configure:27324: test -s conftest configure:27327: $? = 0 configure:27340: result: yes configure:27358: checking for freehostent configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc6YelnM.o: in function `main': ./c++/conftest.cpp:212: undefined reference to `freehostent' collect2: error: ld returned 1 exit status configure:27420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | /* end confdefs.h. */ | /* Define freehostent to an innocuous variant, in case declares freehostent. | For example, HP-UX 11i declares gettimeofday. */ | #define freehostent innocuous_freehostent | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char freehostent (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef freehostent | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char freehostent (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_freehostent || defined __stub___freehostent | choke me | #endif | | int | main () | { | return freehostent (); | ; | return 0; | } configure:27454: result: no configure:27358: checking for gethostent_r configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27420: $? = 0 configure:27427: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27430: $? = 0 configure:27437: test -s conftest configure:27440: $? = 0 configure:27454: result: yes configure:27358: checking for getipnodebyaddr configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc5At9i3.o: in function `main': ./c++/conftest.cpp:213: undefined reference to `getipnodebyaddr' collect2: error: ld returned 1 exit status configure:27420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | /* end confdefs.h. */ | /* Define getipnodebyaddr to an innocuous variant, in case declares getipnodebyaddr. | For example, HP-UX 11i declares gettimeofday. */ | #define getipnodebyaddr innocuous_getipnodebyaddr | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getipnodebyaddr (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getipnodebyaddr | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getipnodebyaddr (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getipnodebyaddr || defined __stub___getipnodebyaddr | choke me | #endif | | int | main () | { | return getipnodebyaddr (); | ; | return 0; | } configure:27454: result: no configure:27358: checking for getipnodebyname configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccAp2Ksc.o: in function `main': ./c++/conftest.cpp:213: undefined reference to `getipnodebyname' collect2: error: ld returned 1 exit status configure:27420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | /* end confdefs.h. */ | /* Define getipnodebyname to an innocuous variant, in case declares getipnodebyname. | For example, HP-UX 11i declares gettimeofday. */ | #define getipnodebyname innocuous_getipnodebyname | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getipnodebyname (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getipnodebyname | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getipnodebyname (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getipnodebyname || defined __stub___getipnodebyname | choke me | #endif | | int | main () | { | return getipnodebyname (); | ; | return 0; | } configure:27454: result: no configure:27358: checking for inet_ntop configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27420: $? = 0 configure:27427: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27430: $? = 0 configure:27437: test -s conftest configure:27440: $? = 0 configure:27454: result: yes configure:27358: checking for socketpair configure:27414: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27420: $? = 0 configure:27427: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27430: $? = 0 configure:27437: test -s conftest configure:27440: $? = 0 configure:27454: result: yes configure:27478: checking for erf configure:27534: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 conftest.cpp:204:6: warning: declaration of 'char erf()' conflicts with built-in declaration 'double erf(double)' [-Wbuiltin-declaration-mismatch] char erf (); ^~~ configure:27540: $? = 0 configure:27547: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27550: $? = 0 configure:27557: test -s conftest configure:27560: $? = 0 configure:27574: result: yes configure:27586: checking for library containing kstat_open configure:27627: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccBNKjQF.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `kstat_open' collect2: error: ld returned 1 exit status configure:27633: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27627: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/cci4BB9Q.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `kstat_open' collect2: error: ld returned 1 exit status configure:27633: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27627: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lkstat -lm -lpthread >&5 /usr/bin/ld: cannot find -lkstat collect2: error: ld returned 1 exit status configure:27633: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27677: result: no configure:27693: checking for library containing rstat configure:27734: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccdVzzO6.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27740: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27734: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/cc3KB9sc.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27740: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27734: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lrpcsvc -lm -lpthread >&5 /usr/bin/ld: /tmp/cc0BamIk.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27740: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27784: result: no configure:27808: checking for library containing setkey configure:27849: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccgzbNPv.o: in function `main': ./c++/conftest.c:193: undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27855: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27849: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccnhY8wC.o: in function `main': ./c++/conftest.c:193: undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27855: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27849: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lcrypt -lm -lpthread >&5 /usr/bin/ld: /tmp/ccDJDLlK.o: in function `main': ./c++/conftest.c:193: undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27855: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27849: /usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.c -lcrypt_i -lm -lpthread >&5 /usr/bin/ld: cannot find -lcrypt_i collect2: error: ld returned 1 exit status configure:27855: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27899: result: no configure:27933: checking for library containing dlopen configure:27974: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccHFhpJK.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `dlopen' collect2: error: ld returned 1 exit status configure:27980: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dlopen (); | int | main () | { | return dlopen (); | ; | return 0; | } configure:27974: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccYviuQS.o: in function `main': ./c++/conftest.cpp:193: undefined reference to `dlopen' collect2: error: ld returned 1 exit status configure:27980: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dlopen (); | int | main () | { | return dlopen (); | ; | return 0; | } configure:27974: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:27980: $? = 0 configure:27987: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27990: $? = 0 configure:27997: test -s conftest configure:28000: $? = 0 configure:28024: result: -ldl configure:28044: checking for library containing uuid_generate configure:28085: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/cc2k1REb.o: in function `main': ./c++/conftest.cpp:194: undefined reference to `uuid_generate' collect2: error: ld returned 1 exit status configure:28091: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:28085: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -luuid -lm -lpthread >&5 /usr/bin/ld: cannot find -luuid collect2: error: ld returned 1 exit status configure:28091: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:28135: result: no configure:28146: checking for library containing fuse_loop configure:28187: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccwJbJOo.o: in function `main': ./c++/conftest.cpp:194: undefined reference to `fuse_loop' collect2: error: ld returned 1 exit status configure:28193: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fuse_loop (); | int | main () | { | return fuse_loop (); | ; | return 0; | } configure:28187: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lfuse -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lfuse collect2: error: ld returned 1 exit status configure:28193: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fuse_loop (); | int | main () | { | return fuse_loop (); | ; | return 0; | } configure:28237: result: no configure:28254: checking for library containing clock_gettime configure:28295: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28301: $? = 0 configure:28308: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28311: $? = 0 configure:28318: test -s conftest configure:28321: $? = 0 configure:28345: result: none required configure:28363: checking for library containing cplus_demangle configure:28404: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccBqZCCO.o: in function `main': ./c++/conftest.cpp:195: undefined reference to `cplus_demangle' collect2: error: ld returned 1 exit status configure:28410: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28404: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccbVLk8M.o: in function `main': ./c++/conftest.cpp:195: undefined reference to `cplus_demangle' collect2: error: ld returned 1 exit status configure:28410: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28404: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldemangle -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -ldemangle collect2: error: ld returned 1 exit status configure:28410: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28454: result: no configure:28484: checking for clock_gettime configure:28540: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28546: $? = 0 configure:28553: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28556: $? = 0 configure:28563: test -s conftest configure:28566: $? = 0 configure:28580: result: yes configure:28484: checking for nanosleep configure:28540: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28546: $? = 0 configure:28553: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28556: $? = 0 configure:28563: test -s conftest configure:28566: $? = 0 configure:28580: result: yes configure:28484: checking for pthread_cond_timedwait_relative_np configure:28540: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccluvQCm.o: in function `main': ./c++/conftest.cpp:220: undefined reference to `pthread_cond_timedwait_relative_np' collect2: error: ld returned 1 exit status configure:28546: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | /* end confdefs.h. */ | /* Define pthread_cond_timedwait_relative_np to an innocuous variant, in case declares pthread_cond_timedwait_relative_np. | For example, HP-UX 11i declares gettimeofday. */ | #define pthread_cond_timedwait_relative_np innocuous_pthread_cond_timedwait_relative_np | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pthread_cond_timedwait_relative_np (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pthread_cond_timedwait_relative_np | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_cond_timedwait_relative_np (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pthread_cond_timedwait_relative_np || defined __stub___pthread_cond_timedwait_relative_np | choke me | #endif | | int | main () | { | return pthread_cond_timedwait_relative_np (); | ; | return 0; | } configure:28580: result: no configure:28484: checking for pthread_condattr_setclock configure:28540: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28546: $? = 0 configure:28553: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28556: $? = 0 configure:28563: test -s conftest configure:28566: $? = 0 configure:28580: result: yes configure:28484: checking for sched_yield configure:28540: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28546: $? = 0 configure:28553: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28556: $? = 0 configure:28563: test -s conftest configure:28566: $? = 0 configure:28580: result: yes configure:28590: checking whether CLOCK_MONOTONIC is declared configure:28624: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:28630: $? = 0 configure:28637: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28640: $? = 0 configure:28647: test -s conftest.o configure:28650: $? = 0 configure:28662: result: yes configure:28678: checking whether CLOCK_SGI_CYCLE is declared configure:28712: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:198:22: error: 'CLOCK_SGI_CYCLE' was not declared in this scope char *p = (char *) CLOCK_SGI_CYCLE; ^~~~~~~~~~~~~~~ configure:28718: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TIME_H | # include | #endif | | int | main () | { | #ifndef CLOCK_SGI_CYCLE | char *p = (char *) CLOCK_SGI_CYCLE; | return !p; | #endif | | ; | return 0; | } configure:28750: result: no configure:28766: checking whether CLOCK_REALTIME is declared configure:28800: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:28806: $? = 0 configure:28813: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28816: $? = 0 configure:28823: test -s conftest.o configure:28826: $? = 0 configure:28838: result: yes configure:28859: checking for library containing iconv configure:28890: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldl -lm -lpthread >&5 configure:28896: $? = 0 configure:28903: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28906: $? = 0 configure:28913: test -s conftest configure:28916: $? = 0 configure:28997: result: none required configure:29006: checking for iconv declaration configure:29033: /usr/bin/g++ -std=gnu++11 -msse4.2 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:29039: $? = 0 configure:29046: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:29049: $? = 0 configure:29056: test -s conftest.o configure:29059: $? = 0 configure:29074: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:29366: checking for libdw configure:29394: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -ldw -ldl -lm -lpthread >&5 conftest.cpp:193:10: fatal error: elfutils/libdw.h: No such file or directory #include ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:29400: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | Dwarf* d = dwarf_begin(17, DWARF_C_READ); | ; | return 0; | } configure:29433: result: no configure:29543: checking for libbackward configure:29579: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lbackward -ldl -lm -lpthread >&5 conftest.cpp:201:30: fatal error: backward.hpp: No such file or directory #include ^~~~~~~~~~~~~~ compilation terminated. configure:29585: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #ifdef HAVE_LIBUNWIND | # define BACKWARD_HAS_UNWIND 1 | #else | # define BACKWARD_HAS_BACKTRACE 1 | #endif | #ifdef HAVE_LIBDW | # define BACKWARD_HAS_DW 1 | #endif | #include | int | main () | { | backward::StackTrace st; st.load_here(32); | ; | return 0; | } configure:29618: result: no configure:29735: checking for libz configure:29763: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lz -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:197:32: warning: unused variable 'n' [-Wunused-variable] gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) ^ conftest.cpp:197:42: warning: 'fp' is used uninitialized in this function [-Wuninitialized] gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status configure:29769: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) | ; | return 0; | } configure:29802: result: no configure:29830: using local zlib copy in util/compress/zlib configure:29922: checking for libbz2 configure:29951: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lbz2 -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:198:13: warning: unused variable 'n' [-Wunused-variable] int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) ^ conftest.cpp:198:27: warning: 'fp' is used uninitialized in this function [-Wuninitialized] int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: cannot find -lbz2 collect2: error: ld returned 1 exit status configure:29957: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | BZFILE* fp; char buf[1024]; int err; | int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) | ; | return 0; | } configure:29990: result: no configure:30018: using local bzlib copy in util/compress/bzip2 configure:30309: checking for libpcre configure:30337: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lpcre -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:198:44: warning: unused variable 'x' [-Wunused-variable] const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); ^ conftest.cpp:198:58: warning: 'p' is used uninitialized in this function [-Wuninitialized] const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); ~~~~~~~~~~^~~~~~~~~ /usr/bin/ld: cannot find -lpcre collect2: error: ld returned 1 exit status configure:30343: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | /* end confdefs.h. */ | #include | int | main () | { | const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); | ; | return 0; | } configure:30376: result: no configure:30404: using local PCRE copy in util/regexp configure:30529: checking for libmbedtls configure:30557: /usr/bin/g++ -std=gnu++11 -msse4.2 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O conftest.cpp -lmbedtls -lmbedx509 -lmbedcrypto -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lmbedtls /usr/bin/ld: cannot find -lmbedx509 /usr/bin/ld: cannot find -lmbedcrypto collect2: error: ld returned 1 exit status configure:30563: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 800 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define NCBI_DLL_BUILD 1 | #define NCBI_PLUGIN_AUTO_LOAD 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 8 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | mbedtls_ssl_context ssl; mbedtls_ssl_init(&ssl); | ; | return 0; | } configure:30596: result: no configure:30600: error: --with-mbedtls explicitly specified, but no usable version found. ## ---------------- ## ## Cache variables. ## ## ---------------- ## _cv_gnu_make_command='/usr/bin/make' ac_cv_build='x86_64-pc-linux-gnu' ac_cv_build_prog_CPP='gcc -E' ac_cv_build_prog_cc_c89='' ac_cv_build_prog_cc_g='yes' ac_cv_c_bigendian='no' ac_cv_c_char_unsigned='no' ac_cv_c_compiler_gnu='yes' ac_cv_c_const='yes' ac_cv_cxx_compiler_gnu='yes' ac_cv_env_CCC_set='' ac_cv_env_CCC_value='' ac_cv_env_CC_set='' ac_cv_env_CC_value='' ac_cv_env_CFLAGS_set='set' ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic' ac_cv_env_CPPFLAGS_set='set' ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set='' ac_cv_env_CPP_value='' ac_cv_env_CXXCPP_set='' ac_cv_env_CXXCPP_value='' ac_cv_env_CXXFLAGS_set='set' ac_cv_env_CXXFLAGS_value='-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CXX_set='' ac_cv_env_CXX_value='' ac_cv_env_LDFLAGS_set='set' ac_cv_env_LDFLAGS_value='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed' ac_cv_env_XMKMF_set='' ac_cv_env_XMKMF_value='' ac_cv_env_build_alias_set='' ac_cv_env_build_alias_value='' ac_cv_env_host_alias_set='' ac_cv_env_host_alias_value='' ac_cv_env_target_alias_set='' ac_cv_env_target_alias_value='' ac_cv_func__doprnt='no' ac_cv_func_alarm='yes' ac_cv_func_asprintf='yes' ac_cv_func_atoll='yes' ac_cv_func_basename='yes' ac_cv_func_clock_gettime='yes' ac_cv_func_daemon='yes' ac_cv_func_dbopen='no' ac_cv_func_erf='yes' ac_cv_func_euidaccess='yes' ac_cv_func_eventfd='yes' ac_cv_func_freehostent='no' ac_cv_func_fseeko='yes' ac_cv_func_fstat='yes' ac_cv_func_getaddrinfo='yes' ac_cv_func_getgrouplist='yes' ac_cv_func_gethostent_r='yes' ac_cv_func_gethrtime='no' ac_cv_func_getipnodebyaddr='no' ac_cv_func_getipnodebyname='no' ac_cv_func_getloadavg='yes' ac_cv_func_getnameinfo='yes' ac_cv_func_getopt='yes' ac_cv_func_getpagesize='yes' ac_cv_func_getpass='yes' ac_cv_func_getpassphrase='no' ac_cv_func_getpwuid='yes' ac_cv_func_getrusage='yes' ac_cv_func_gettimeofday='yes' ac_cv_func_getuid='yes' ac_cv_func_inet_ntoa_r='no' ac_cv_func_inet_ntop='yes' ac_cv_func_lchown='yes' ac_cv_func_localtime_r='yes' ac_cv_func_lutimes='yes' ac_cv_func_malloc_options='no' ac_cv_func_memrchr='yes' ac_cv_func_nanosleep='yes' ac_cv_func_nl_langinfo='yes' ac_cv_func_poll='yes' ac_cv_func_pthread_atfork='yes' ac_cv_func_pthread_cond_timedwait_relative_np='no' ac_cv_func_pthread_condattr_setclock='yes' ac_cv_func_pthread_setconcurrency='yes' ac_cv_func_putenv='yes' ac_cv_func_readpassphrase='no' ac_cv_func_readv='yes' ac_cv_func_sched_yield='yes' ac_cv_func_select='yes' ac_cv_func_setenv='yes' ac_cv_func_setitimer='yes' ac_cv_func_setrlimit='yes' ac_cv_func_snprintf='yes' ac_cv_func_socketpair='yes' ac_cv_func_statfs='yes' ac_cv_func_statvfs='yes' ac_cv_func_strcasecmp='yes' ac_cv_func_strdup='yes' ac_cv_func_strlcat='no' ac_cv_func_strlcpy='no' ac_cv_func_strndup='yes' ac_cv_func_strnlen='yes' ac_cv_func_strsep='yes' ac_cv_func_strtok_r='yes' ac_cv_func_sysmp='no' ac_cv_func_timegm='yes' ac_cv_func_usleep='yes' ac_cv_func_utimes='yes' ac_cv_func_vasprintf='yes' ac_cv_func_vprintf='yes' ac_cv_func_vsnprintf='yes' ac_cv_func_which_localtime_r='struct' ac_cv_func_writev='yes' ac_cv_have_decl_CLOCK_MONOTONIC='yes' ac_cv_have_decl_CLOCK_REALTIME='yes' ac_cv_have_decl_CLOCK_SGI_CYCLE='no' ac_cv_have_decl__LIBCPP_VERSION='no' ac_cv_have_decl_abi____cxa_demangle='yes' ac_cv_header_alloca_h='yes' ac_cv_header_arpa_inet_h='yes' ac_cv_header_atomic_h='no' ac_cv_header_cpuid_h='yes' ac_cv_header_cxxabi_h='yes' ac_cv_header_dirent_h='yes' ac_cv_header_dlfcn_h='yes' ac_cv_header_errno_h='yes' ac_cv_header_fcntl_h='yes' ac_cv_header_fstream='yes' ac_cv_header_fstream_h='no' ac_cv_header_getopt_h='yes' ac_cv_header_ieeefp_h='no' ac_cv_header_inttypes_h='yes' ac_cv_header_iostream='yes' ac_cv_header_iostream_h='no' ac_cv_header_langinfo_h='yes' ac_cv_header_libgen_h='yes' ac_cv_header_limits='yes' ac_cv_header_limits_h='yes' ac_cv_header_locale_h='yes' ac_cv_header_malloc_h='yes' ac_cv_header_memory_h='yes' ac_cv_header_net_inet_in_h='no' ac_cv_header_netdb_h='yes' ac_cv_header_netinet_in_h='yes' ac_cv_header_netinet_tcp_h='yes' ac_cv_header_paths_h='yes' ac_cv_header_poll_h='yes' ac_cv_header_select_h='no' ac_cv_header_signal_h='yes' ac_cv_header_stdbool_h='yes' ac_cv_header_stdc='yes' ac_cv_header_stddef_h='yes' ac_cv_header_stdint_h='yes' ac_cv_header_stdlib_h='yes' ac_cv_header_string_h='yes' ac_cv_header_strings_h='yes' ac_cv_header_strstrea_h='no' ac_cv_header_strstream='yes' ac_cv_header_strstream_h='no' ac_cv_header_sys_epoll_h='yes' ac_cv_header_sys_eventfd_h='yes' ac_cv_header_sys_file_h='yes' ac_cv_header_sys_ioctl_h='yes' ac_cv_header_sys_mount_h='yes' ac_cv_header_sys_param_h='yes' ac_cv_header_sys_resource_h='yes' ac_cv_header_sys_select_h='yes' ac_cv_header_sys_socket_h='yes' ac_cv_header_sys_sockio_h='no' ac_cv_header_sys_stat_h='yes' ac_cv_header_sys_statvfs_h='yes' ac_cv_header_sys_sysinfo_h='yes' ac_cv_header_sys_time_h='yes' ac_cv_header_sys_types_h='yes' ac_cv_header_sys_vfs_h='yes' ac_cv_header_sys_wait_h='yes' ac_cv_header_time='yes' ac_cv_header_unistd_h='yes' ac_cv_header_valgrind_memcheck_h='no' ac_cv_header_wchar_h='yes' ac_cv_header_windows_h='no' ac_cv_header_x86intrin_h='yes' ac_cv_host='x86_64-pc-linux-gnu' ac_cv_lib_nsl_gethostbyname='yes' ac_cv_lib_resolv_res_search='yes' ac_cv_lib_socket_connect='no' ac_cv_member_struct_sockaddr_in_sin_len='no' ac_cv_member_struct_tm___tm_zone='no' ac_cv_member_struct_tm_tm_zone='yes' ac_cv_objext='o' ac_cv_path_BASENAME='/usr/bin/basename' ac_cv_path_DPKG_ARCHITECTURE='/usr/bin/dpkg-architecture' ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP='/bin/grep' ac_cv_path_LDD='/usr/bin/ldd' ac_cv_path_MAKE='/usr/bin/make' ac_cv_path_SED='/bin/sed' ac_cv_path_TAIL='/usr/bin/tail' ac_cv_path_TOUCH='/bin/touch' ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AR='ar cr' ac_cv_prog_AWK='mawk' ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='/usr/bin/g++ -std=gnu++11 -msse4.2 -E' ac_cv_prog_STRIP='strip' ac_cv_prog_ac_ct_CC='gcc' ac_cv_prog_ac_ct_CC_FOR_BUILD='gcc' ac_cv_prog_ac_ct_CXX='g++' ac_cv_prog_ac_ct_RANLIB='ranlib' ac_cv_prog_cc_c89='' ac_cv_prog_cc_g='yes' ac_cv_prog_cxx_g='yes' ac_cv_search_clock_gettime='none required' ac_cv_search_cplus_demangle='no' ac_cv_search_dlopen='-ldl' ac_cv_search_fuse_loop='no' ac_cv_search_iconv='none required' ac_cv_search_kstat_open='no' ac_cv_search_rstat='no' ac_cv_search_setkey='no' ac_cv_search_uuid_generate='no' ac_cv_sizeof___int64='0' ac_cv_sizeof_char='1' ac_cv_sizeof_double='8' ac_cv_sizeof_float='4' ac_cv_sizeof_int='4' ac_cv_sizeof_long='8' ac_cv_sizeof_long_double='16' ac_cv_sizeof_long_long='8' ac_cv_sizeof_short='2' ac_cv_sizeof_size_t='8' ac_cv_sizeof_voidp='8' ac_cv_sizeof_wchar_t='4' ac_cv_type___int64='no' ac_cv_type_char='yes' ac_cv_type_double='yes' ac_cv_type_float='yes' ac_cv_type_int='yes' ac_cv_type_intptr_t='yes' ac_cv_type_long='yes' ac_cv_type_long_double='yes' ac_cv_type_long_long='yes' ac_cv_type_short='yes' ac_cv_type_signal='void' ac_cv_type_size_t='yes' ac_cv_type_socklen_t='yes' ac_cv_type_uintptr_t='yes' ac_cv_type_union_semun='no' ac_cv_type_voidp='yes' ac_cv_type_wchar_t='yes' ac_cv_type_wstring_linkable='yes' am_cv_proto_iconv='extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);' am_cv_proto_iconv_arg1='' ax_cv_gnu_make_command='/usr/bin/make' ncbi_cv_c_attribute_destructor='yes' ncbi_cv_c_attribute_visibility_default='unnecessary' ncbi_cv_c_deprecation_syntax='__attribute__((__deprecated__))' ncbi_cv_c_forceinline='inline __attribute__((always_inline))' ncbi_cv_c_noreturn='__attribute__((__noreturn__))' ncbi_cv_c_packed='__attribute__((__packed__))' ncbi_cv_c_restrict='__restrict__' ncbi_cv_c_stdio_locked='yes' ncbi_cv_c_tls_var='__thread' ncbi_cv_c_warn_unused_result='__attribute__((warn_unused_result))' ncbi_cv_cc_aes='yes' ncbi_cv_cc_fdiagnostics_color_always='yes' ncbi_cv_cc_sse4_1='yes' ncbi_cv_cc_unsafe_math='yes' ncbi_cv_cc_vector_math='yes' ncbi_cv_cpp_gnu_varargs='yes' ncbi_cv_cpp_std_varargs='yes' ncbi_cv_cxx_builtin_bswap32='yes' ncbi_cv_cxx_builtin_expect='yes' ncbi_cv_cxx_restrict='__restrict__' ncbi_cv_cxx_throw_spec='yes' ncbi_cv_decl_fionbio_needs_bsd_comp='no' ncbi_cv_decl_inaddr_none='yes' ncbi_cv_func_gethostbyaddr_r='8' ncbi_cv_func_gethostbyname_r='6' ncbi_cv_func_getlogin_r='yes' ncbi_cv_func_getpwuid_r='5' ncbi_cv_func_getservbyname_r='6' ncbi_cv_func_ios_register_callback='yes' ncbi_cv_func_pthread_mutex='yes' ncbi_cv_func_readdir_r='3' ncbi_cv_func_select_updates_timeout='yes' ncbi_cv_func_strcasecmp_lc='yes' ncbi_cv_func_sysinfo_1='yes' ncbi_cv_lib_backward_cpp='no' ncbi_cv_lib_bz2='no' ncbi_cv_lib_libdw='no' ncbi_cv_lib_mbedtls='no' ncbi_cv_lib_pcre='no' ncbi_cv_lib_z='no' ncbi_cv_prog_c_99='-std=gnu11 -fgnu89-inline' ncbi_cv_prog_c_sse42='yes' ncbi_cv_prog_cc_as_needed='-Wl,--as-needed' ncbi_cv_prog_cc_export_all='-Wl,-export-dynamic' ncbi_cv_prog_cc_new_dtags='yes' ncbi_cv_prog_cc_whole_archive='-Wl,--whole-archive' ncbi_cv_prog_cc_wl_no_asu='yes' ncbi_cv_prog_cxx_11='-std=gnu++11' ncbi_cv_prog_cxx_sse42='yes' ncbi_cv_prog_cxx_stdlib_libcxx='no' ncbi_cv_prog_ranlib_effect='neutral' ncbi_cv_strip_loses_rtti='no' ncbi_cv_sys_semaphores='yes' ncbi_cv_sys_stack_dir='up' ncbi_cv_sys_unaligned_reads='yes' ncbi_cv_sys_xdir_ln='yes' ## ----------------- ## ## Output variables. ## ## ----------------- ## AES_FLAG='-maes' ALLOW_UNDEF='' AMQ='' APP_LDFLAGS='' APP_LIBS_SETTING='$(LIBS)' APP_LIB_SETTING='$(LIB)' APP_NOCOPY='' APP_OR_NULL='' AR='ar cr' AR_FILTER='' AR_WRAPPER='' AS_NEEDED='-Wl,--as-needed' AVROGENCPP='' AVRO_INCLUDE='' AVRO_LIBS='' AVRO_STATIC_LIBS='' AWK='mawk' AWS_SDK_INCLUDE='' AWS_SDK_LIBS='' AWS_SDK_STATIC_LIBS='' BACKWARD_CPP_INCLUDE='' BACKWARD_CPP_LIBS='' BASENAME='/usr/bin/basename' BDB_CACHE_LIB='' BDB_LIB='' BERKELEYDB_CXX_LIBS='' BERKELEYDB_CXX_STATIC_LIBS='' BERKELEYDB_INCLUDE='' BERKELEYDB_LIBS='' BERKELEYDB_STATIC_LIBS='' BINCOPY='/bin/bash $(top_srcdir)/scripts/common/impl/if_diff.sh "/bin/ln -f"' BOOST_CHRONO_LIBS='' BOOST_CHRONO_STATIC_LIBS='' BOOST_FILESYSTEM_LIBS='' BOOST_FILESYSTEM_STATIC_LIBS='' BOOST_INCLUDE='' BOOST_IOSTREAMS_LIBS='' BOOST_IOSTREAMS_STATIC_LIBS='' BOOST_LIBPATH='' BOOST_PROGRAM_OPTIONS_LIBS='' BOOST_PROGRAM_OPTIONS_STATIC_LIBS='' BOOST_REGEX_LIBS='' BOOST_REGEX_STATIC_LIBS='' BOOST_SYSTEM_LIBS='' BOOST_SYSTEM_STATIC_LIBS='' BOOST_TAG='' BOOST_TEST_PEM_LIBS='' BOOST_TEST_PEM_STATIC_LIBS='' BOOST_TEST_TEM_LIBS='' BOOST_TEST_TEM_STATIC_LIBS='' BOOST_TEST_UTF_LIBS='' BOOST_TEST_UTF_STATIC_LIBS='' BOOST_THREAD_LIBS='' BOOST_THREAD_STATIC_LIBS='' BUILD_EXEEXT='' BUILD_OBJEXT='' BZ2_INCLUDE='-I$(includedir)/util/compress/bzip2 -I$(includedir0)/util/compress/bzip2' BZ2_LIB='bz2' BZ2_LIBS='' CASSANDRA_INCLUDE='' CASSANDRA_LIBS='' CASSANDRA_STATIC_LIBS='' CC='/usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline' CC='/usr/bin/gcc -msse4.2 -std=gnu11 -fgnu89-inline' CCACHE='' CC_FILTER='' CC_FOR_BUILD='gcc' CC_WRAPPER='' CD_REPORTER='' CEREAL_INCLUDE='' CFLAGS='-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC' CFLAGS='-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC' CFLAGS_DLL='' CFLAGS_FOR_BUILD='-g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE' CHECK_ARG='' CHECK_OS_NAME='' CHECK_TIMEOUT_MULT='' CHECK_TOOLS='' COLOR_DIAGNOSTICS='-fdiagnostics-color=always' COMPILER='gcc' CONNEXT='' CPP='gcc -E' CPP='gcc -E' CPPFLAGS=' -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS=' -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS=' -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS_FOR_BUILD='' CPP_FOR_BUILD='gcc -E' CRYPT_LIBS='' CURL_INCLUDE='' CURL_LIBS='' CXX='/usr/bin/g++ -std=gnu++11 -msse4.2' CXXCPP='/usr/bin/g++ -std=gnu++11 -msse4.2 -E' CXXFLAGS='-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC' CXXFLAGS_DLL='' CXX_FILTER='' CXX_WRAPPER='' C_LIBS='-lm -lpthread' C_LINK='$(CC)' DBAPI_CTLIB='' DBAPI_DRIVER='' DBAPI_FTDS100='' DBAPI_FTDS64='' DBAPI_FTDS95='' DBAPI_FTDS='' DBAPI_MYSQL='' DBAPI_ODBC='' DEBUG_SFX='Release' DEFS='' DEMANGLE_LIBS='' DEPFLAGS='-M' DEPFLAGS_POST='' DISTCC='' DLL='' DLL_LDFLAGS=' -fPIC' DLL_LIB_SETTING='$(DLL_DLIB)' DL_LIBS='-ldl' DPKG_ARCHITECTURE='/usr/bin/dpkg-architecture' D_SFX='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EGREP_Q='/bin/grep -E -q' EXEEXT='' EXPAT_INCLUDE='' EXPAT_LIBS='' EXPAT_STATIC_LIBS='' FASTCGI_INCLUDE='' FASTCGI_LIBS='' FASTCGI_OBJS='' FAST_CFLAGS='-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC' FAST_CXXFLAGS='-Wall -Wno-format-y2k -pthread -fopenmp -g -O2 -fdebug-prefix-map=/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC' FAST_LDFLAGS='-Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed -g -O' FEATURES='' FORBID_UNDEF='-Wl,--no-undefined -Wl,--no-allow-shlib-undefined' FORCE_STATIC_LIB='' FREETYPE_INCLUDE='' FREETYPE_LIBS='' FTDS100_CTLIB_INCLUDE='' FTDS100_CTLIB_LIB='' FTDS100_CTLIB_LIBS='' FTDS100_INCLUDE='' FTDS100_LIB='' FTDS100_LIBS='' FTDS64_CTLIB_INCLUDE='' FTDS64_CTLIB_LIB='' FTDS64_CTLIB_LIBS='' FTDS64_INCLUDE='' FTDS64_LIB='' FTDS64_LIBS='' FTDS95_CTLIB_INCLUDE='' FTDS95_CTLIB_LIB='' FTDS95_CTLIB_LIBS='' FTDS95_INCLUDE='' FTDS95_LIB='' FTDS95_LIBS='' FTDS_INCLUDE='' FTDS_LIB='' FTDS_LIBS='' FTGL_INCLUDE='' FTGL_LIBS='' GCCPCH='#' GCRYPT_INCLUDE='' GCRYPT_LIBS='' GIF_INCLUDE='' GIF_LIBS='' GLEW_INCLUDE='' GLEW_LIBS='' GLEW_STATIC_LIBS='' GLUT_INCLUDE='' GLUT_LIBS='' GMOCK_INCLUDE='' GMOCK_LIBS='' GMP_INCLUDE='' GMP_LIBS='' GNUTLS_INCLUDE='' GNUTLS_LIBS='' GREP='/bin/grep' GRPC_BIN='' GRPC_INCLUDE='' GRPC_LIBS='' GRPC_REFLECTION_LIBS='' GRPC_UNSECURE_LIBS='' GSOAP_INCLUDE='' GSOAP_LIBS='' GSOAP_PATH='' GSOAP_SOAPCPP2='' GSOAP_WSDL2H='' H2O_INCLUDE='' H2O_LIBS='' H2O_STATIC_LIBS='' HDF5_INCLUDE='' HDF5_LIBS='' ICONV_LIBS='' ICU_CONFIG='' ICU_INCLUDE='' ICU_LIBS='' ICU_STATIC_LIBS='' IF_DEACTIVATING='' IF_REBUILDING_CONDITIONALLY='' IF_REBUILDING_LIBS='' IF_WITH_DLL='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' JDK_INCLUDE='' JDK_PATH='' JPEG_INCLUDE='' JPEG_LIBS='' KRB5_CONFIG='' KRB5_INCLUDE='' KRB5_LIBS='' KSTAT_LIBS='' KeepStateTarget='' LAPACK_INCLUDE='' LAPACK_LIBS='' 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build_cpu='x86_64' build_os='linux-gnu' build_root='/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++/BUILD' build_vendor='pc' builddir='/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++/BUILD/build' c_ncbi_runpath='' check='' compiler='GCC' compiler_root='/usr' compiler_version='800' configurables_mfname='' datadir='${datarootdir}' datarootdir='${prefix}/share' dbapi='' dll_ext='.so' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exe_ext='' exec_prefix='NONE' f_compile='-c ' f_libpath='-L' f_outexe='-o ' f_outlib='' f_outobj='-o ' f_runpath='-Wl,-rpath,' freetds='' freetype_config='' gui='' has_dll_loadable='@# ' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' ifGNUmake='' includedir='${prefix}/include' infodir='${datarootdir}/info' internal='' lib_ext='.a' lib_l_ext='' lib_l_pre='-l' lib_pre='lib' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' loadable_ext='.so' local_lbsm='' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' make_shell='SHELL=/bin/bash' mandir='${datarootdir}/man' mysql_config='' ncbi_crypt='' ncbi_id2proc_snp='' ncbi_id2proc_wgs='' ncbi_java='' ncbi_runpath='' ncbi_xloader_bam='' ncbi_xloader_csra='' ncbi_xloader_snp='' ncbi_xloader_sra='' ncbi_xloader_vdbgraph='' ncbi_xloader_wgs='' ncbi_xreader_pubseqos2='' ncbi_xreader_pubseqos='' ncbicntr='' obj_ext='.o' objects='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' runpath='-Wl,-rpath,/usr/lib/ncbi-blast+ -Wl,-rpath-link,$(libdir)' sbindir='${exec_prefix}/sbin' script_shell='#! /bin/bash' serial='' serial_ws50_rtti_kludge='' sharedstatedir='${prefix}/com' signature='GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131' sraread='' srcdir='/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++' sssutils='' status_dir='/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1/c++/BUILD/status' sysconfdir='${prefix}/etc' target_alias='' top_srcdir='' wxconf='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define NCBI_CXX_TOOLKIT 1 #define HAVE_COMMON_NCBI_BUILD_VER_H 1 #define HOST "x86_64-pc-linux-gnu" #define HOST_CPU "x86_64" #define HOST_VENDOR "pc" #define HOST_OS "linux-gnu" #define NCBI_COMPILER "GCC" #define NCBI_COMPILER_GCC 1 #define NCBI_COMPILER_VERSION 800 #define _GNU_SOURCE 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define SIZEOF_SIZE_T 8 #define NCBI_PLATFORM_BITS 64 #define NCBI_SIGNATURE "GCC_800-ReleaseMTDLL64--x86_64-pc-linux4.9.0-gnu2.28-gcc131" #define NCBI_DLL_SUPPORT 1 #define NCBI_DLL_BUILD 1 #define NCBI_PLUGIN_AUTO_LOAD 1 #define HAVE_IOSTREAM 1 #define HAVE_FSTREAM 1 #define HAVE_STRSTREAM 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define NCBI_OS_UNIX 1 #define NCBI_OS "UNIX" #define NCBI_OS_LINUX 1 #define HAVE_WSTRING 1 #define HAVE_SOCKLEN_T 1 #define HAVE_CPUID_H 1 #define HAVE_DLFCN_H 1 #define HAVE_POLL_H 1 #define HAVE_SYS_EPOLL_H 1 #define HAVE_SYS_MOUNT_H 1 #define HAVE_SYS_STATVFS_H 1 #define HAVE_SYS_SYSINFO_H 1 #define HAVE_SYS_VFS_H 1 #define HAVE_X86INTRIN_H 1 #define HAVE_ALLOCA_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_DIRENT_H 1 #define HAVE_ERRNO_H 1 #define HAVE_FCNTL_H 1 #define HAVE_GETOPT_H 1 #define HAVE_LANGINFO_H 1 #define HAVE_LIBGEN_H 1 #define HAVE_LOCALE_H 1 #define HAVE_MALLOC_H 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_NETINET_TCP_H 1 #define HAVE_PATHS_H 1 #define HAVE_SIGNAL_H 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDDEF_H 1 #define HAVE_SYS_EVENTFD_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_WCHAR_H 1 #define TIME_WITH_SYS_TIME 1 #define HAVE_CXXABI_H 1 #define HAVE_CXA_DEMANGLE 1 #define HAVE_GETHOSTBYNAME_R 6 #define HAVE_GETHOSTBYADDR_R 8 #define HAVE_GETSERVBYNAME_R 6 #define NCBI_HAVE_GETPWUID_R 5 #define HAVE_GETLOGIN_R 1 #define HAVE_LOCALTIME_R 1 #define HAVE_PTHREAD_SETCONCURRENCY 1 #define HAVE_PTHREAD_ATFORK 1 #define HAVE_FUNC_LOCALTIME_R_TM 1 #define HAVE_PTHREAD_MUTEX 1 #define HAVE_VPRINTF 1 #define HAVE_ALARM 1 #define HAVE_ASPRINTF 1 #define HAVE_ATOLL 1 #define HAVE_BASENAME 1 #define HAVE_DAEMON 1 #define HAVE_EUIDACCESS 1 #define HAVE_EVENTFD 1 #define HAVE_FSEEKO 1 #define HAVE_FSTAT 1 #define HAVE_GETGROUPLIST 1 #define HAVE_GETOPT 1 #define HAVE_GETPAGESIZE 1 #define HAVE_GETPASS 1 #define HAVE_GETPWUID 1 #define HAVE_GETRUSAGE 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_GETUID 1 #define HAVE_LCHOWN 1 #define HAVE_LUTIMES 1 #define HAVE_MEMRCHR 1 #define HAVE_NL_LANGINFO 1 #define HAVE_POLL 1 #define HAVE_PUTENV 1 #define HAVE_READV 1 #define HAVE_SELECT 1 #define HAVE_SETENV 1 #define HAVE_SETITIMER 1 #define HAVE_SETRLIMIT 1 #define HAVE_SNPRINTF 1 #define HAVE_STATFS 1 #define HAVE_STATVFS 1 #define HAVE_STRCASECMP 1 #define HAVE_STRDUP 1 #define HAVE_STRNDUP 1 #define HAVE_STRNLEN 1 #define HAVE_STRSEP 1 #define HAVE_STRTOK_R 1 #define HAVE_TIMEGM 1 #define HAVE_USLEEP 1 #define HAVE_UTIMES 1 #define HAVE_VASPRINTF 1 #define HAVE_VSNPRINTF 1 #define HAVE_WRITEV 1 #define RETSIGTYPE void #define SELECT_UPDATES_TIMEOUT 1 #define HAVE_STRCASECMP_LC 1 #define HAVE_SYSINFO_1 1 #define HAVE_GETLOADAVG 1 #define NCBI_HAVE_READDIR_R 3 #define NCBI_HAVE_STDIO_LOCKED 1 #define SIZEOF_CHAR 1 #define SIZEOF_DOUBLE 8 #define SIZEOF_FLOAT 4 #define SIZEOF_INT 4 #define SIZEOF_LONG 8 #define SIZEOF_LONG_DOUBLE 16 #define SIZEOF_LONG_LONG 8 #define SIZEOF_SHORT 2 #define SIZEOF_VOIDP 8 #define SIZEOF_WCHAR_T 4 #define SIZEOF___INT64 0 #define HAVE_INTPTR_T 1 #define HAVE_UINTPTR_T 1 #define HAVE_STRUCT_TM_TM_ZONE 1 #define NCBI_USE_THROW_SPEC 1 #define HAVE_IOS_REGISTER_CALLBACK 1 #define HAVE_SYSV_SEMAPHORES 1 #define STACK_GROWS_UP 1 #define HAVE_CPP_STD_VARARGS 1 #define HAVE_CPP_GNU_VARARGS 1 #define NCBI_DEPRECATED __attribute__((__deprecated__)) #define NCBI_FORCEINLINE inline __attribute__((always_inline)) #define HAVE_ATTRIBUTE_DESTRUCTOR 1 #define NCBI_RESTRICT_C __restrict__ #define HAVE_RESTRICT_C 1 #define NCBI_RESTRICT_CXX __restrict__ #define HAVE_RESTRICT_CXX 1 #define NCBI_NORETURN __attribute__((__noreturn__)) #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) #define NCBI_TLS_VAR __thread #define NCBI_PACKED __attribute__((__packed__)) #define HAVE_UNALIGNED_READS 1 #define HAVE_VECTOR_MATH 1 #define HAVE_BUILTIN_BSWAP 1 #define HAVE_BUILTIN_EXPECT 1 #define HAVE_GETADDRINFO 1 #define HAVE_GETNAMEINFO 1 #define HAVE_GETHOSTENT_R 1 #define HAVE_INET_NTOP 1 #define HAVE_SOCKETPAIR 1 #define HAVE_ERF 1 #define HAVE_LIBDL 1 #define HAVE_LIBRT 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_NANOSLEEP 1 #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 #define HAVE_SCHED_YIELD 1 #define HAVE_DECL_CLOCK_MONOTONIC 1 #define HAVE_DECL_CLOCK_SGI_CYCLE 0 #define HAVE_DECL_CLOCK_REALTIME 1 #define HAVE_LIBICONV 1 #define ICONV_CONST #define USE_LOCAL_BZLIB 1 #define USE_LOCAL_PCRE 1 configure: exit 1 tail: cannot open 'BUILD/status/config.log' for reading: No such file or directory make[1]: *** [debian/rules:52: override_dh_auto_configure-arch] Error 1 make[1]: Leaving directory '/build/ncbi-blast+-NHHrhI/ncbi-blast+-2.8.1' make: *** [debian/rules:130: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2019-04-19T18:40:49Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /build/ncbi-blast+-NHHrhI Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 294956 Build-Time: 40 Distribution: unstable Fail-Stage: build Foreign Architectures: s390x Host Architecture: s390x Install-Time: 28 Job: ncbi-blast+_2.8.1-1 Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 82 Source-Version: 2.8.1-1 Space: 294956 Status: attempted Version: 2.8.1-1 -------------------------------------------------------------------------------- Finished at 2019-04-19T18:40:49Z Build needed 00:01:22, 294956k disk space