sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org +==============================================================================+ | ncbi-blast+ 2.10.0-1 (mipsel) Mon, 27 Apr 2020 18:09:05 +0000 | +==============================================================================+ Package: ncbi-blast+ Version: 2.10.0-1 Source Version: 2.10.0-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: mipsel Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-382b1d57-e383-4c50-ad17-1b625807be26' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zGdzTh/resolver-r6FDyF' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://debian.oregonstate.edu/debian unstable InRelease [146 kB] Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-27-0800.45.pdiff [4504 B] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-27-1415.18.pdiff [16.7 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main Sources 2020-04-27-1415.18.pdiff [16.7 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-27-0800.45.pdiff [3940 B] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-27-1415.18.pdiff [11.3 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2020-04-27-1415.18.pdiff [11.3 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main mipsel Packages [7939 kB] Fetched 8178 kB in 1s (5489 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-blastplus.git Please use: git clone https://salsa.debian.org/med-team/ncbi-blastplus.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 25.6 MB of source archives. Get:1 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.10.0-1 (dsc) [2329 B] Get:2 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.10.0-1 (tar) [25.5 MB] Get:3 http://debian.oregonstate.edu/debian unstable/main ncbi-blast+ 2.10.0-1 (diff) [32.4 kB] Fetched 25.6 MB in 3s (9647 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zGdzTh/ncbi-blast+-2.10.0' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zGdzTh' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel, 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps Filtered Build-Depends: debhelper-compat (= 12), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mipsel:amd64, libc-dev:mipsel, libstdc++-dev:mipsel, 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [957 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [472 B] Get:5 copy:/<>/apt_archive ./ Packages [553 B] Fetched 1982 B in 0s (78.4 kB/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... The following additional packages will be installed: 2to3 autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-8-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libboost-test-dev:mipsel libboost-test1.67-dev:mipsel libboost-test1.67.0:mipsel libboost1.67-dev:mipsel libbsd0 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libevent-2.1-7:mipsel libexpat1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgmp-dev:mipsel libgmp10:mipsel libgmpxx4ldbl:mipsel libgnutls-dane0:mipsel libgnutls-openssl27:mipsel libgnutls28-dev:mipsel libgnutls30:mipsel libgnutlsxx28:mipsel libgomp1:mipsel libgomp1-mipsel-cross libhogweed5:mipsel libicu63 libidn2-0:mipsel libidn2-dev:mipsel libio-string-perl liblmdb-dev:mipsel liblmdb0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto3:mipsel libmbedtls-dev:mipsel libmbedtls12:mipsel libmbedx509-0:mipsel libmpdec2 libncurses6 libnettle7:mipsel libp11-kit-dev:mipsel libp11-kit0:mipsel libpcre16-3:mipsel libpcre3:mipsel libpcre3-dev:mipsel libpcre32-3:mipsel libpcrecpp0v5:mipsel libpipeline1 libprocps8 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-8-dev:mipsel libstdc++-9-dev libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtasn1-6-dev:mipsel libtool libuchardet0 libunbound8:mipsel libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mime-support nettle-dev:mipsel po-debconf procps python3 python3-lib2to3 python3-minimal python3.8 python3.8-minimal readline-common sensible-utils time ucf zlib1g:mipsel zlib1g-dev:mipsel Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch g++-multilib g++-9-multilib gcc-9-doc g++-9-multilib-mipsel-linux-gnu gcc-9-multilib-mipsel-linux-gnu manpages-dev flex bison gdb-mipsel-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.67-doc:mipsel libboost-atomic1.67-dev:mipsel libboost-chrono1.67-dev:mipsel libboost-container1.67-dev:mipsel libboost-context1.67-dev:mipsel libboost-contract1.67-dev:mipsel libboost-coroutine1.67-dev:mipsel libboost-date-time1.67-dev:mipsel libboost-exception1.67-dev:mipsel libboost-fiber1.67-dev:mipsel libboost-filesystem1.67-dev:mipsel libboost-graph1.67-dev:mipsel libboost-graph-parallel1.67-dev:mipsel libboost-iostreams1.67-dev:mipsel libboost-locale1.67-dev:mipsel libboost-log1.67-dev:mipsel libboost-math1.67-dev:mipsel libboost-mpi1.67-dev:mipsel libboost-mpi-python1.67-dev:mipsel libboost-numpy1.67-dev:mipsel libboost-program-options1.67-dev:mipsel libboost-python1.67-dev:mipsel libboost-random1.67-dev:mipsel libboost-regex1.67-dev:mipsel libboost-serialization1.67-dev:mipsel libboost-signals1.67-dev:mipsel libboost-stacktrace1.67-dev:mipsel libboost-system1.67-dev:mipsel libboost-thread1.67-dev:mipsel libboost-timer1.67-dev:mipsel libboost-type-erasure1.67-dev:mipsel libboost-wave1.67-dev:mipsel libboost1.67-tools-dev:mipsel libmpfrc++-dev:mipsel libntl-dev:mipsel glibc-doc:mipsel libc-l10n:mipsel locales:mipsel glibc-doc manpages-dev:mipsel gmp-doc:mipsel libgmp10-doc:mipsel libmpfr-dev:mipsel dns-root-data:mipsel gnutls-bin:mipsel gnutls-doc:mipsel libmbedtls-doc:mipsel libstdc++-8-doc:mipsel libstdc++-9-doc libtool-doc gfortran | fortran95-compiler gcj-jdk libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl python3-doc python3-tk python3-venv python3.8-venv python3.8-doc binfmt-support readline-doc Recommended packages: curl | wget | lynx bzip2-doc:mipsel libarchive-cpio-perl libglib2.0-data shared-mime-info xdg-user-dirs lmdb-doc:mipsel libgpm2 libtasn1-doc:mipsel libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc The following NEW packages will be installed: 2to3 autoconf automake autopoint autotools-dev binutils-mipsel-linux-gnu bsdmainutils build-essential cpp-9-mipsel-linux-gnu cpp-mipsel-linux-gnu cross-config crossbuild-essential-mipsel debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz file g++ g++-9 g++-9-mipsel-linux-gnu g++-mipsel-linux-gnu gcc-10-base:mipsel gcc-10-cross-base-mipsen gcc-8-base:mipsel gcc-9-cross-base-mipsen gcc-9-mipsel-linux-gnu gcc-9-mipsel-linux-gnu-base gcc-mipsel-linux-gnu gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mipsel libatomic1-mipsel-cross libboost-test-dev:mipsel libboost-test1.67-dev:mipsel libboost-test1.67.0:mipsel libboost1.67-dev:mipsel libbsd0 libbz2-1.0:mipsel libbz2-dev:mipsel libc6:mipsel libc6-dev libc6-dev:mipsel libc6-dev-mipsel-cross libc6-mipsel-cross libconfig-auto-perl libconfig-inifiles-perl libcroco3 libcrypt-dev libcrypt-dev:mipsel libcrypt1:mipsel libdebhelper-perl libdebian-dpkgcross-perl libelf1 libevent-2.1-7:mipsel libexpat1 libffi7:mipsel libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-8-dev:mipsel libgcc-9-dev-mipsel-cross libgcc-s1:mipsel libgcc-s1-mipsel-cross libglib2.0-0 libgmp-dev:mipsel libgmp10:mipsel libgmpxx4ldbl:mipsel libgnutls-dane0:mipsel libgnutls-openssl27:mipsel libgnutls28-dev:mipsel libgnutls30:mipsel libgnutlsxx28:mipsel libgomp1:mipsel libgomp1-mipsel-cross libhogweed5:mipsel libicu63 libidn2-0:mipsel libidn2-dev:mipsel libio-string-perl liblmdb-dev:mipsel liblmdb0:mipsel liblocale-gettext-perl libmagic-mgc libmagic1 libmbedcrypto3:mipsel libmbedtls-dev:mipsel libmbedtls12:mipsel libmbedx509-0:mipsel libmpdec2 libncurses6 libnettle7:mipsel libp11-kit-dev:mipsel libp11-kit0:mipsel libpcre16-3:mipsel libpcre3:mipsel libpcre3-dev:mipsel libpcre32-3:mipsel libpcrecpp0v5:mipsel libpipeline1 libprocps8 libpython3-stdlib libpython3.8-minimal libpython3.8-stdlib libreadline8 libsigsegv2 libsqlite3-0 libssl1.1 libstdc++-8-dev:mipsel libstdc++-9-dev libstdc++-9-dev-mipsel-cross libstdc++6:mipsel libstdc++6-mipsel-cross libsub-override-perl libtasn1-6:mipsel libtasn1-6-dev:mipsel libtool libuchardet0 libunbound8:mipsel libunistring2:mipsel libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl linux-libc-dev:mipsel linux-libc-dev-mipsel-cross m4 man-db mime-support nettle-dev:mipsel po-debconf procps python3 python3-lib2to3 python3-minimal python3.8 python3.8-minimal readline-common sbuild-build-depends-main-dummy:mipsel sensible-utils time ucf zlib1g:mipsel zlib1g-dev:mipsel 0 upgraded, 150 newly installed, 0 to remove and 0 not upgraded. Need to get 102 MB of archives. After this operation, 496 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [984 B] Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB] Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB] Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB] Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-4 [919 kB] Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.2-2 [33.9 kB] Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.9.1-1 [1308 kB] Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-4 [18.8 kB] Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1g-1 [1543 kB] Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-minimal amd64 3.8.2-1+b1 [751 kB] Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.9-1 [94.3 kB] Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8-minimal amd64 3.8.2-1+b1 [1941 kB] Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 python3-minimal amd64 3.8.2-3 [37.6 kB] Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 mime-support all 3.64 [37.8 kB] Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libmpdec2 amd64 2.4.2-3 [84.1 kB] Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-4 [72.5 kB] Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-4 [160 kB] Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.31.1-5 [661 kB] Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3.8-stdlib amd64 3.8.2-1+b1 [1666 kB] Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 python3.8 amd64 3.8.2-1+b1 [410 kB] Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libpython3-stdlib amd64 3.8.2-3 [20.8 kB] Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 python3 amd64 3.8.2-3 [63.7 kB] Get:23 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-10-base mipsel 10-20200418-1 [196 kB] Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.2-1 [102 kB] Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libprocps8 amd64 2:3.3.16-4 [62.7 kB] Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 procps amd64 2:3.3.16-4 [262 kB] Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12+nmu1 [16.0 kB] Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.38-4 [262 kB] Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.38-4 [120 kB] Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.38-4 [67.9 kB] Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-10 [123 kB] Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB] Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 python3-lib2to3 all 3.8.2-2 [78.4 kB] Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 2to3 all 3.8.2-3 [21.6 kB] Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB] Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-4 [203 kB] Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11.1 [341 kB] Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB] Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.2-1 [775 kB] Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-10 [435 kB] Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-mipsel-linux-gnu amd64 2.34-5cross6 [2309 kB] Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libcrypt-dev amd64 1:4.4.16-1 [104 kB] Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev amd64 2.30-4 [2629 kB] Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev amd64 9.3.0-11 [1701 kB] Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9 amd64 9.3.0-11 [10.7 MB] Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 g++ amd64 4:9.2.1-3.1 [1644 B] Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 build-essential amd64 12.8 [7640 B] Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu-base amd64 9.3.0-8cross1 [196 kB] Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6465 kB] Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-mipsel-linux-gnu amd64 4:9.2.1-4.1 [16.7 kB] Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB] Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base-mipsen all 9.3.0-8cross1 [192 kB] Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-10-cross-base-mipsen all 10-20200324-1cross1 [192 kB] Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-mipsel-cross all 2.30-2cross1 [1199 kB] Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-s1-mipsel-cross all 10-20200324-1cross1 [46.6 kB] Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-mipsel-cross all 10-20200324-1cross1 [90.3 kB] Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-mipsel-cross all 10-20200324-1cross1 [6652 B] Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-mipsel-cross all 9.3.0-8cross1 [223 kB] Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [6819 kB] Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1460 B] Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-mipsel-cross all 10-20200324-1cross1 [395 kB] Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-mipsel-cross all 5.4.19-1cross1 [1166 kB] Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-mipsel-cross all 2.30-2cross1 [2274 kB] Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-mipsel-cross all 9.3.0-8cross1 [1708 kB] Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-mipsel-linux-gnu amd64 9.3.0-8cross1 [7051 kB] Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 g++-mipsel-linux-gnu amd64 4:9.2.1-4.1 [1176 B] Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000002-1 [52.0 kB] Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB] Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-3 [8296 kB] Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.10+dfsg-5 [709 kB] Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB] Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB] Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB] Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-2 [343 kB] Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB] Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.30-1 [67.7 kB] Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB] Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB] Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB] Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB] Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB] Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-mipsel all 12.8 [6684 B] Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-14 [513 kB] Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB] Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 libdebhelper-perl all 13 [184 kB] Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB] Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.8.0-1 [24.2 kB] Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.8.0-1 [14.8 kB] Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB] Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-5 [151 kB] Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.64.2-1 [1343 kB] Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB] Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-10 [1303 kB] Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB] Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB] Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 13 [1002 kB] Get:98 http://debian.oregonstate.edu/debian unstable/main mipsel gcc-8-base mipsel 8.4.0-3 [194 kB] Get:99 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-s1 mipsel 10-20200418-1 [46.2 kB] Get:100 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt1 mipsel 1:4.4.16-1 [113 kB] Get:101 http://debian.oregonstate.edu/debian unstable/main mipsel libc6 mipsel 2.30-4 [2419 kB] Get:102 http://debian.oregonstate.edu/debian unstable/main mipsel libatomic1 mipsel 10-20200418-1 [6712 B] Get:103 http://debian.oregonstate.edu/debian unstable/main mipsel libgomp1 mipsel 10-20200418-1 [92.2 kB] Get:104 http://debian.oregonstate.edu/debian unstable/main mipsel libgcc-8-dev mipsel 8.4.0-3 [210 kB] Get:105 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++6 mipsel 10-20200418-1 [434 kB] Get:106 http://debian.oregonstate.edu/debian unstable/main mipsel linux-libc-dev mipsel 5.5.17-1 [1086 kB] Get:107 http://debian.oregonstate.edu/debian unstable/main mipsel libcrypt-dev mipsel 1:4.4.16-1 [134 kB] Get:108 http://debian.oregonstate.edu/debian unstable/main mipsel libc6-dev mipsel 2.30-4 [2271 kB] Get:109 http://debian.oregonstate.edu/debian unstable/main mipsel libstdc++-8-dev mipsel 8.4.0-3 [1561 kB] Get:110 http://debian.oregonstate.edu/debian unstable/main mipsel libboost1.67-dev mipsel 1.67.0-17+b1 [8389 kB] Get:111 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-test1.67.0 mipsel 1.67.0-17+b1 [426 kB] Get:112 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-test1.67-dev mipsel 1.67.0-17+b1 [528 kB] Get:113 http://debian.oregonstate.edu/debian unstable/main mipsel libboost-test-dev mipsel 1.67.0.2+b1 [4304 B] Get:114 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-1.0 mipsel 1.0.8-2 [45.9 kB] Get:115 http://debian.oregonstate.edu/debian unstable/main mipsel libbz2-dev mipsel 1.0.8-2 [31.7 kB] Get:116 http://debian.oregonstate.edu/debian unstable/main mipsel libevent-2.1-7 mipsel 2.1.11-stable-1 [167 kB] Get:117 http://debian.oregonstate.edu/debian unstable/main mipsel libffi7 mipsel 3.3-4 [20.1 kB] Get:118 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp10 mipsel 2:6.2.0+dfsg-4 [225 kB] Get:119 http://debian.oregonstate.edu/debian unstable/main mipsel libgmpxx4ldbl mipsel 2:6.2.0+dfsg-4 [22.6 kB] Get:120 http://debian.oregonstate.edu/debian unstable/main mipsel libgmp-dev mipsel 2:6.2.0+dfsg-4 [638 kB] Get:121 http://debian.oregonstate.edu/debian unstable/main mipsel libnettle7 mipsel 3.5.1+really3.5.1-2 [247 kB] Get:122 http://debian.oregonstate.edu/debian unstable/main mipsel libhogweed5 mipsel 3.5.1+really3.5.1-2 [130 kB] Get:123 http://debian.oregonstate.edu/debian unstable/main mipsel libunistring2 mipsel 0.9.10-2 [360 kB] Get:124 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-0 mipsel 2.3.0-1 [84.5 kB] Get:125 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit0 mipsel 0.23.20-1 [276 kB] Get:126 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6 mipsel 4.16.0-2 [53.4 kB] Get:127 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls30 mipsel 3.6.13-2 [1083 kB] Get:128 http://debian.oregonstate.edu/debian unstable/main mipsel libunbound8 mipsel 1.10.0-1 [448 kB] Get:129 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls-dane0 mipsel 3.6.13-2 [360 kB] Get:130 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls-openssl27 mipsel 3.6.13-2 [360 kB] Get:131 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutlsxx28 mipsel 3.6.13-2 [12.9 kB] Get:132 http://debian.oregonstate.edu/debian unstable/main mipsel libidn2-dev mipsel 2.3.0-1 [87.6 kB] Get:133 http://debian.oregonstate.edu/debian unstable/main mipsel libp11-kit-dev mipsel 0.23.20-1 [205 kB] Get:134 http://debian.oregonstate.edu/debian unstable/main mipsel libtasn1-6-dev mipsel 4.16.0-2 [105 kB] Get:135 http://debian.oregonstate.edu/debian unstable/main mipsel nettle-dev mipsel 3.5.1+really3.5.1-2 [1146 kB] Get:136 http://debian.oregonstate.edu/debian unstable/main mipsel libgnutls28-dev mipsel 3.6.13-2 [1219 kB] Get:137 http://debian.oregonstate.edu/debian unstable/main mipsel liblmdb0 mipsel 0.9.24-1 [43.9 kB] Get:138 http://debian.oregonstate.edu/debian unstable/main mipsel liblmdb-dev mipsel 0.9.24-1 [63.6 kB] Get:139 http://debian.oregonstate.edu/debian unstable/main mipsel libmbedcrypto3 mipsel 2.16.5-1 [202 kB] Get:140 http://debian.oregonstate.edu/debian unstable/main mipsel libmbedx509-0 mipsel 2.16.5-1 [101 kB] Get:141 http://debian.oregonstate.edu/debian unstable/main mipsel libmbedtls12 mipsel 2.16.5-1 [124 kB] Get:142 http://debian.oregonstate.edu/debian unstable/main mipsel libmbedtls-dev mipsel 2.16.5-1 [523 kB] Get:143 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre16-3 mipsel 2:8.39-12+b1 [247 kB] Get:144 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre3 mipsel 2:8.39-12+b1 [330 kB] Get:145 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre32-3 mipsel 2:8.39-12+b1 [239 kB] Get:146 http://debian.oregonstate.edu/debian unstable/main mipsel libpcrecpp0v5 mipsel 2:8.39-12+b1 [152 kB] Get:147 http://debian.oregonstate.edu/debian unstable/main mipsel libpcre3-dev mipsel 2:8.39-12+b1 [626 kB] Get:148 http://debian.oregonstate.edu/debian unstable/main amd64 time amd64 1.7-25.1+b1 [31.6 kB] Get:149 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g mipsel 1:1.2.11.dfsg-2 [88.2 kB] Get:150 http://debian.oregonstate.edu/debian unstable/main mipsel zlib1g-dev mipsel 1:1.2.11.dfsg-2 [190 kB] debconf: delaying package configuration, since apt-utils is not installed Fetched 102 MB in 1s (110 MB/s) Selecting previously unselected package libbsd0:amd64. (Reading database ... 12631 files and directories currently installed.) Preparing to unpack .../00-libbsd0_0.10.0-1_amd64.deb ... Unpacking libbsd0:amd64 (0.10.0-1) ... Selecting previously unselected package bsdmainutils. Preparing to unpack .../01-bsdmainutils_11.1.2+b1_amd64.deb ... Unpacking bsdmainutils (11.1.2+b1) ... Selecting previously unselected package libuchardet0:amd64. Preparing to unpack .../02-libuchardet0_0.0.6-3_amd64.deb ... Unpacking libuchardet0:amd64 (0.0.6-3) ... Selecting previously unselected package groff-base. Preparing to unpack .../03-groff-base_1.22.4-4_amd64.deb ... Unpacking groff-base (1.22.4-4) ... Selecting previously unselected package libpipeline1:amd64. Preparing to unpack .../04-libpipeline1_1.5.2-2_amd64.deb ... Unpacking libpipeline1:amd64 (1.5.2-2) ... Selecting previously unselected package man-db. Preparing to unpack .../05-man-db_2.9.1-1_amd64.deb ... Unpacking man-db (2.9.1-1) ... Selecting previously unselected package liblocale-gettext-perl. Preparing to unpack .../06-liblocale-gettext-perl_1.07-4_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-4) ... Selecting previously unselected package libssl1.1:amd64. Preparing to unpack .../07-libssl1.1_1.1.1g-1_amd64.deb ... Unpacking libssl1.1:amd64 (1.1.1g-1) ... Selecting previously unselected package libpython3.8-minimal:amd64. Preparing to unpack .../08-libpython3.8-minimal_3.8.2-1+b1_amd64.deb ... Unpacking libpython3.8-minimal:amd64 (3.8.2-1+b1) ... Selecting previously unselected package libexpat1:amd64. Preparing to unpack .../09-libexpat1_2.2.9-1_amd64.deb ... Unpacking libexpat1:amd64 (2.2.9-1) ... Selecting previously unselected package python3.8-minimal. Preparing to unpack .../10-python3.8-minimal_3.8.2-1+b1_amd64.deb ... Unpacking python3.8-minimal (3.8.2-1+b1) ... Setting up libssl1.1:amd64 (1.1.1g-1) ... Setting up libpython3.8-minimal:amd64 (3.8.2-1+b1) ... Setting up libexpat1:amd64 (2.2.9-1) ... Setting up python3.8-minimal (3.8.2-1+b1) ... Selecting previously unselected package python3-minimal. (Reading database ... 13602 files and directories currently installed.) Preparing to unpack .../0-python3-minimal_3.8.2-3_amd64.deb ... Unpacking python3-minimal (3.8.2-3) ... Selecting previously unselected package mime-support. Preparing to unpack .../1-mime-support_3.64_all.deb ... Unpacking mime-support (3.64) ... Selecting previously unselected package libmpdec2:amd64. Preparing to unpack .../2-libmpdec2_2.4.2-3_amd64.deb ... Unpacking libmpdec2:amd64 (2.4.2-3) ... Selecting previously unselected package readline-common. Preparing to unpack .../3-readline-common_8.0-4_all.deb ... Unpacking readline-common (8.0-4) ... Selecting previously unselected package libreadline8:amd64. Preparing to unpack .../4-libreadline8_8.0-4_amd64.deb ... Unpacking libreadline8:amd64 (8.0-4) ... Selecting previously unselected package libsqlite3-0:amd64. Preparing to unpack .../5-libsqlite3-0_3.31.1-5_amd64.deb ... Unpacking libsqlite3-0:amd64 (3.31.1-5) ... Selecting previously unselected package libpython3.8-stdlib:amd64. Preparing to unpack .../6-libpython3.8-stdlib_3.8.2-1+b1_amd64.deb ... Unpacking libpython3.8-stdlib:amd64 (3.8.2-1+b1) ... Selecting previously unselected package python3.8. Preparing to unpack .../7-python3.8_3.8.2-1+b1_amd64.deb ... Unpacking python3.8 (3.8.2-1+b1) ... Selecting previously unselected package libpython3-stdlib:amd64. Preparing to unpack .../8-libpython3-stdlib_3.8.2-3_amd64.deb ... Unpacking libpython3-stdlib:amd64 (3.8.2-3) ... Setting up python3-minimal (3.8.2-3) ... Selecting previously unselected package python3. (Reading database ... 14037 files and directories currently installed.) Preparing to unpack .../000-python3_3.8.2-3_amd64.deb ... Unpacking python3 (3.8.2-3) ... Selecting previously unselected package gcc-10-base:mipsel. Preparing to unpack .../001-gcc-10-base_10-20200418-1_mipsel.deb ... Unpacking gcc-10-base:mipsel (10-20200418-1) ... Selecting previously unselected package libncurses6:amd64. Preparing to unpack .../002-libncurses6_6.2-1_amd64.deb ... Unpacking libncurses6:amd64 (6.2-1) ... Selecting previously unselected package libprocps8:amd64. Preparing to unpack .../003-libprocps8_2%3a3.3.16-4_amd64.deb ... Unpacking libprocps8:amd64 (2:3.3.16-4) ... Selecting previously unselected package procps. Preparing to unpack .../004-procps_2%3a3.3.16-4_amd64.deb ... Unpacking procps (2:3.3.16-4) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../005-sensible-utils_0.0.12+nmu1_all.deb ... Unpacking sensible-utils (0.0.12+nmu1) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../006-libmagic-mgc_1%3a5.38-4_amd64.deb ... Unpacking libmagic-mgc (1:5.38-4) ... Selecting previously unselected package libmagic1:amd64. Preparing to unpack .../007-libmagic1_1%3a5.38-4_amd64.deb ... Unpacking libmagic1:amd64 (1:5.38-4) ... Selecting previously unselected package file. Preparing to unpack .../008-file_1%3a5.38-4_amd64.deb ... Unpacking file (1:5.38-4) ... Selecting previously unselected package gettext-base. Preparing to unpack .../009-gettext-base_0.19.8.1-10_amd64.deb ... Unpacking gettext-base (0.19.8.1-10) ... Selecting previously unselected package ucf. Preparing to unpack .../010-ucf_3.0038+nmu1_all.deb ... Moving old data out of the way Unpacking ucf (3.0038+nmu1) ... Selecting previously unselected package python3-lib2to3. Preparing to unpack .../011-python3-lib2to3_3.8.2-2_all.deb ... Unpacking python3-lib2to3 (3.8.2-2) ... Selecting previously unselected package 2to3. Preparing to unpack .../012-2to3_3.8.2-3_all.deb ... Unpacking 2to3 (3.8.2-3) ... Selecting previously unselected package libsigsegv2:amd64. Preparing to unpack .../013-libsigsegv2_2.12-2_amd64.deb ... Unpacking libsigsegv2:amd64 (2.12-2) ... Selecting previously unselected package m4. Preparing to unpack .../014-m4_1.4.18-4_amd64.deb ... Unpacking m4 (1.4.18-4) ... Selecting previously unselected package autoconf. Preparing to unpack .../015-autoconf_2.69-11.1_all.deb ... Unpacking autoconf (2.69-11.1) ... Selecting previously unselected package autotools-dev. Preparing to unpack .../016-autotools-dev_20180224.1_all.deb ... Unpacking autotools-dev (20180224.1) ... Selecting previously unselected package automake. Preparing to unpack .../017-automake_1%3a1.16.2-1_all.deb ... Unpacking automake (1:1.16.2-1) ... Selecting previously unselected package autopoint. Preparing to unpack .../018-autopoint_0.19.8.1-10_all.deb ... Unpacking autopoint (0.19.8.1-10) ... Selecting previously unselected package binutils-mipsel-linux-gnu. Preparing to unpack .../019-binutils-mipsel-linux-gnu_2.34-5cross6_amd64.deb ... Unpacking binutils-mipsel-linux-gnu (2.34-5cross6) ... Selecting previously unselected package libcrypt-dev:amd64. Preparing to unpack .../020-libcrypt-dev_1%3a4.4.16-1_amd64.deb ... Unpacking libcrypt-dev:amd64 (1:4.4.16-1) ... Selecting previously unselected package libc6-dev:amd64. Preparing to unpack .../021-libc6-dev_2.30-4_amd64.deb ... Unpacking libc6-dev:amd64 (2.30-4) ... Selecting previously unselected package libstdc++-9-dev:amd64. Preparing to unpack .../022-libstdc++-9-dev_9.3.0-11_amd64.deb ... Unpacking libstdc++-9-dev:amd64 (9.3.0-11) ... Selecting previously unselected package g++-9. Preparing to unpack .../023-g++-9_9.3.0-11_amd64.deb ... Unpacking g++-9 (9.3.0-11) ... Selecting previously unselected package g++. Preparing to unpack .../024-g++_4%3a9.2.1-3.1_amd64.deb ... Unpacking g++ (4:9.2.1-3.1) ... Selecting previously unselected package build-essential. Preparing to unpack .../025-build-essential_12.8_amd64.deb ... Unpacking build-essential (12.8) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu-base:amd64. Preparing to unpack .../026-gcc-9-mipsel-linux-gnu-base_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Selecting previously unselected package cpp-9-mipsel-linux-gnu. Preparing to unpack .../027-cpp-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package cpp-mipsel-linux-gnu. Preparing to unpack .../028-cpp-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package cross-config. Preparing to unpack .../029-cross-config_2.6.15-3_all.deb ... Unpacking cross-config (2.6.15-3) ... Selecting previously unselected package gcc-9-cross-base-mipsen. Preparing to unpack .../030-gcc-9-cross-base-mipsen_9.3.0-8cross1_all.deb ... Unpacking gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Selecting previously unselected package gcc-10-cross-base-mipsen. Preparing to unpack .../031-gcc-10-cross-base-mipsen_10-20200324-1cross1_all.deb ... Unpacking gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Selecting previously unselected package libc6-mipsel-cross. Preparing to unpack .../032-libc6-mipsel-cross_2.30-2cross1_all.deb ... Unpacking libc6-mipsel-cross (2.30-2cross1) ... Selecting previously unselected package libgcc-s1-mipsel-cross. Preparing to unpack .../033-libgcc-s1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libgomp1-mipsel-cross. Preparing to unpack .../034-libgomp1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libgomp1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libatomic1-mipsel-cross. Preparing to unpack .../035-libatomic1-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libatomic1-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package libgcc-9-dev-mipsel-cross. Preparing to unpack .../036-libgcc-9-dev-mipsel-cross_9.3.0-8cross1_all.deb ... Unpacking libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Selecting previously unselected package gcc-9-mipsel-linux-gnu. Preparing to unpack .../037-gcc-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package gcc-mipsel-linux-gnu. Preparing to unpack .../038-gcc-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libstdc++6-mipsel-cross. Preparing to unpack .../039-libstdc++6-mipsel-cross_10-20200324-1cross1_all.deb ... Unpacking libstdc++6-mipsel-cross (10-20200324-1cross1) ... Selecting previously unselected package linux-libc-dev-mipsel-cross. Preparing to unpack .../040-linux-libc-dev-mipsel-cross_5.4.19-1cross1_all.deb ... Unpacking linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Selecting previously unselected package libc6-dev-mipsel-cross. Preparing to unpack .../041-libc6-dev-mipsel-cross_2.30-2cross1_all.deb ... Unpacking libc6-dev-mipsel-cross (2.30-2cross1) ... Selecting previously unselected package libstdc++-9-dev-mipsel-cross. Preparing to unpack .../042-libstdc++-9-dev-mipsel-cross_9.3.0-8cross1_all.deb ... Unpacking libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Selecting previously unselected package g++-9-mipsel-linux-gnu. Preparing to unpack .../043-g++-9-mipsel-linux-gnu_9.3.0-8cross1_amd64.deb ... Unpacking g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Selecting previously unselected package g++-mipsel-linux-gnu. Preparing to unpack .../044-g++-mipsel-linux-gnu_4%3a9.2.1-4.1_amd64.deb ... Unpacking g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Selecting previously unselected package libconfig-inifiles-perl. Preparing to unpack .../045-libconfig-inifiles-perl_3.000002-1_all.deb ... Unpacking libconfig-inifiles-perl (3.000002-1) ... Selecting previously unselected package libio-string-perl. Preparing to unpack .../046-libio-string-perl_1.08-3_all.deb ... Unpacking libio-string-perl (1.08-3) ... Selecting previously unselected package libicu63:amd64. Preparing to unpack .../047-libicu63_63.2-3_amd64.deb ... Unpacking libicu63:amd64 (63.2-3) ... Selecting previously unselected package libxml2:amd64. Preparing to unpack .../048-libxml2_2.9.10+dfsg-5_amd64.deb ... Unpacking libxml2:amd64 (2.9.10+dfsg-5) ... Selecting previously unselected package libxml-namespacesupport-perl. Preparing to unpack .../049-libxml-namespacesupport-perl_1.12-1_all.deb ... Unpacking libxml-namespacesupport-perl (1.12-1) ... Selecting previously unselected package libxml-sax-base-perl. Preparing to unpack .../050-libxml-sax-base-perl_1.09-1_all.deb ... Unpacking libxml-sax-base-perl (1.09-1) ... 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Setting up libfile-which-perl (1.23-1) ... Setting up time (1.7-25.1+b1) ... Setting up mime-support (3.64) ... Setting up libmagic-mgc (1:5.38-4) ... Setting up libarchive-zip-perl (1.68-1) ... Setting up libglib2.0-0:amd64 (2.64.2-1) ... No schema files found: doing nothing. Setting up libdebhelper-perl (13) ... Setting up libsqlite3-0:amd64 (3.31.1-5) ... Setting up libmagic1:amd64 (1:5.38-4) ... Setting up linux-libc-dev:mipsel (5.5.17-1) ... Setting up libc6-mipsel-cross (2.30-2cross1) ... Setting up libxml-namespacesupport-perl (1.12-1) ... Setting up gettext-base (0.19.8.1-10) ... Setting up file (1:5.38-4) ... Setting up gcc-9-cross-base-mipsen (9.3.0-8cross1) ... Setting up gcc-9-mipsel-linux-gnu-base:amd64 (9.3.0-8cross1) ... Setting up libyaml-perl (1.30-1) ... Setting up libicu63:amd64 (63.2-3) ... Setting up libxml-sax-base-perl (1.09-1) ... Setting up libio-string-perl (1.08-3) ... Setting up gcc-10-base:mipsel (10-20200418-1) ... Setting up autotools-dev (20180224.1) ... Setting up cross-config (2.6.15-3) ... Setting up gcc-10-cross-base-mipsen (10-20200324-1cross1) ... Setting up binutils-mipsel-linux-gnu (2.34-5cross6) ... Setting up libncurses6:amd64 (6.2-1) ... Setting up libsigsegv2:amd64 (2.12-2) ... Setting up gcc-8-base:mipsel (8.4.0-3) ... Setting up libgomp1-mipsel-cross (10-20200324-1cross1) ... Setting up autopoint (0.19.8.1-10) ... Setting up cpp-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up linux-libc-dev-mipsel-cross (5.4.19-1cross1) ... Setting up sensible-utils (0.0.12+nmu1) ... Setting up libcrypt-dev:amd64 (1:4.4.16-1) ... Setting up libuchardet0:amd64 (0.0.6-3) ... Setting up libsub-override-perl (0.09-2) ... Setting up libc6-dev:amd64 (2.30-4) ... Setting up libmpdec2:amd64 (2.4.2-3) ... Setting up libfile-homedir-perl (1.004-1) ... Setting up libbsd0:amd64 (0.10.0-1) ... Setting up libelf1:amd64 (0.176-1.1) ... Setting up readline-common (8.0-4) ... Setting up libxml2:amd64 (2.9.10+dfsg-5) ... Setting up liblocale-gettext-perl (1.07-4) ... Setting up libprocps8:amd64 (2:3.3.16-4) ... Setting up libfile-stripnondeterminism-perl (1.8.0-1) ... Setting up libstdc++-9-dev:amd64 (9.3.0-11) ... Setting up libc6-dev-mipsel-cross (2.30-2cross1) ... Setting up libtool (2.4.6-14) ... Setting up libgcc-s1-mipsel-cross (10-20200324-1cross1) ... Setting up libreadline8:amd64 (8.0-4) ... Setting up m4 (1.4.18-4) ... Setting up libatomic1-mipsel-cross (10-20200324-1cross1) ... Setting up libgcc-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up cpp-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up bsdmainutils (11.1.2+b1) ... update-alternatives: using /usr/bin/bsd-write to provide /usr/bin/write (write) in auto mode update-alternatives: using /usr/bin/bsd-from to provide /usr/bin/from (from) in auto mode Setting up libcroco3:amd64 (0.6.13-1) ... Setting up ucf (3.0038+nmu1) ... Setting up g++-9 (9.3.0-11) ... Setting up autoconf (2.69-11.1) ... Setting up dh-strip-nondeterminism (1.8.0-1) ... Setting up g++ (4:9.2.1-3.1) ... update-alternatives: using /usr/bin/g++ to provide /usr/bin/c++ (c++) in auto mode Setting up dwz (0.13-5) ... Setting up groff-base (1.22.4-4) ... Setting up procps (2:3.3.16-4) ... update-alternatives: using /usr/bin/w.procps to provide /usr/bin/w (w) in auto mode Setting up build-essential (12.8) ... Setting up libpython3.8-stdlib:amd64 (3.8.2-1+b1) ... Setting up python3.8 (3.8.2-1+b1) ... Setting up libpython3-stdlib:amd64 (3.8.2-3) ... Setting up automake (1:1.16.2-1) ... update-alternatives: using /usr/bin/automake-1.16 to provide /usr/bin/automake (automake) in auto mode Setting up gcc-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up gettext (0.19.8.1-10) ... Setting up libstdc++6-mipsel-cross (10-20200324-1cross1) ... Setting up python3 (3.8.2-3) ... Setting up man-db (2.9.1-1) ... Not building database; man-db/auto-update is not 'true'. Setting up libxml-sax-perl (1.02+dfsg-1) ... update-perl-sax-parsers: Registering Perl SAX parser XML::SAX::PurePerl with priority 10... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up intltool-debian (0.35.0+20060710.5) ... Setting up gcc-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-libxml-perl (2.0134+dfsg-2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Replacing config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up python3-lib2to3 (3.8.2-2) ... Setting up libstdc++-9-dev-mipsel-cross (9.3.0-8cross1) ... Setting up po-debconf (1.0.21) ... Setting up g++-9-mipsel-linux-gnu (9.3.0-8cross1) ... Setting up 2to3 (3.8.2-3) ... Setting up g++-mipsel-linux-gnu (4:9.2.1-4.1) ... Setting up libxml-simple-perl (2.25-1) ... Setting up libconfig-auto-perl (0.44-1) ... Setting up libdebian-dpkgcross-perl (2.6.15-3) ... Setting up dpkg-cross (2.6.15-3) ... Setting up crossbuild-essential-mipsel (12.8) ... Setting up libcrypt1:mipsel (1:4.4.16-1) ... Setting up libgcc-s1:mipsel (10-20200418-1) ... Setting up dh-autoreconf (19) ... Setting up libc6:mipsel (2.30-4) ... Setting up libnettle7:mipsel (3.5.1+really3.5.1-2) ... Setting up libcrypt-dev:mipsel (1:4.4.16-1) ... Setting up libtasn1-6:mipsel (4.16.0-2) ... Setting up libmbedcrypto3:mipsel (2.16.5-1) ... Setting up libc6-dev:mipsel (2.30-4) ... Setting up libbz2-1.0:mipsel (1.0.8-2) ... Setting up libtasn1-6-dev:mipsel (4.16.0-2) ... Setting up libstdc++6:mipsel (10-20200418-1) ... Setting up libbz2-dev:mipsel (1.0.8-2) ... Setting up liblmdb0:mipsel (0.9.24-1) ... Setting up libpcre16-3:mipsel (2:8.39-12+b1) ... Setting up libmbedx509-0:mipsel (2.16.5-1) ... Setting up libboost-test1.67.0:mipsel (1.67.0-17+b1) ... Setting up libffi7:mipsel (3.3-4) ... Setting up libmbedtls12:mipsel (2.16.5-1) ... Setting up libunistring2:mipsel (0.9.10-2) ... Setting up debhelper (13) ... Setting up zlib1g:mipsel (1:1.2.11.dfsg-2) ... Setting up libidn2-0:mipsel (2.3.0-1) ... Setting up libmbedtls-dev:mipsel (2.16.5-1) ... Setting up libgomp1:mipsel (10-20200418-1) ... Setting up libpcre3:mipsel (2:8.39-12+b1) ... Setting up libgmp10:mipsel (2:6.2.0+dfsg-4) ... Setting up libp11-kit0:mipsel (0.23.20-1) ... Setting up libpcre32-3:mipsel (2:8.39-12+b1) ... Setting up libatomic1:mipsel (10-20200418-1) ... Setting up libevent-2.1-7:mipsel (2.1.11-stable-1) ... Setting up libidn2-dev:mipsel (2.3.0-1) ... Setting up liblmdb-dev:mipsel (0.9.24-1) ... Setting up libgcc-8-dev:mipsel (8.4.0-3) ... Setting up zlib1g-dev:mipsel (1:1.2.11.dfsg-2) ... Setting up libp11-kit-dev:mipsel (0.23.20-1) ... Setting up libstdc++-8-dev:mipsel (8.4.0-3) ... Setting up libboost1.67-dev:mipsel (1.67.0-17+b1) ... Setting up libpcrecpp0v5:mipsel (2:8.39-12+b1) ... Setting up libhogweed5:mipsel (3.5.1+really3.5.1-2) ... Setting up libpcre3-dev:mipsel (2:8.39-12+b1) ... Setting up libboost-test1.67-dev:mipsel (1.67.0-17+b1) ... Setting up libboost-test-dev:mipsel (1.67.0.2+b1) ... Setting up libunbound8:mipsel (1.10.0-1) ... Setting up libgnutls30:mipsel (3.6.13-2) ... Setting up libgmpxx4ldbl:mipsel (2:6.2.0+dfsg-4) ... Setting up libgnutlsxx28:mipsel (3.6.13-2) ... Setting up libgnutls-dane0:mipsel (3.6.13-2) ... Setting up libgnutls-openssl27:mipsel (3.6.13-2) ... Setting up libgmp-dev:mipsel (2:6.2.0+dfsg-4) ... Setting up nettle-dev:mipsel (3.5.1+really3.5.1-2) ... Setting up libgnutls28-dev:mipsel (3.6.13-2) ... Setting up sbuild-build-depends-main-dummy:mipsel (0.invalid.0) ... Processing triggers for libc-bin (2.30-4) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mipsel included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 4.19.0-6-amd64 #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) amd64 (x86_64) Toolchain package versions: binutils_2.34-6 dpkg-dev_1.19.7 g++-9_9.3.0-11 gcc-9_9.3.0-11 libc6-dev_2.30-4 libstdc++-8-dev_8.4.0-3 libstdc++-9-dev_9.3.0-11 libstdc++-9-dev-mipsel-cross_9.3.0-8cross1 libstdc++6_10-20200418-1 libstdc++6-mipsel-cross_10-20200324-1cross1 linux-libc-dev_5.5.17-1 Package versions: 2to3_3.8.2-3 adduser_3.118 apt_2.0.2 autoconf_2.69-11.1 automake_1:1.16.2-1 autopoint_0.19.8.1-10 autotools-dev_20180224.1 base-files_11 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+------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA256 Format: 3.0 (quilt) Source: ncbi-blast+ Binary: ncbi-blast+, ncbi-blast+-legacy Architecture: any all Version: 2.10.0-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Aaron M. Ucko Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Standards-Version: 4.5.0 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 12) Build-Depends-Arch: 2to3, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libpcre3-dev, time, zlib1g-dev, procps Package-List: ncbi-blast+ deb science optional arch=any ncbi-blast+-legacy deb science optional arch=all Checksums-Sha1: 20f283b84973c43b2f2cba2c8bda7cccd4bc3a2b 25547460 ncbi-blast+_2.10.0.orig.tar.gz 7abcc724e551bc985e2def5a24ec2b42c3ce6175 32404 ncbi-blast+_2.10.0-1.debian.tar.xz Checksums-Sha256: 3acdd9cec01c4f43e56aeaf89049cb8f8013d60b9c1705eced10166967f1d926 25547460 ncbi-blast+_2.10.0.orig.tar.gz 34c558c3c10937bd7b337a902b9a09d97bd44dd2d32d710eb24f870ee284cf99 32404 ncbi-blast+_2.10.0-1.debian.tar.xz Files: 0be82e26787579c5d14517af63502197 25547460 ncbi-blast+_2.10.0.orig.tar.gz b3bae31c0a509c4806e1dc0cf525a0bc 32404 ncbi-blast+_2.10.0-1.debian.tar.xz -----BEGIN PGP SIGNATURE----- iQJEBAEBCAAuFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAl6mG8UQHHVja29AZGVi aWFuLm9yZwAKCRAecJGx8Upkoq5mD/47+Q9MvVZ6PAv3ibJ3WZb9zTPv2XJqZGI9 fvWjKq3n/HZYncQZEb6ucA6hbw53PO9/0bHlHbhV5aFKRmrB9ShDCPEwutW7krNz RcfQVp2mV/5vw7RjW07gp/uubX6FbZ+P3D9Hi+mT87PRh5QsxGshf4sdX1V1nJYu lAF6j9brp7guqV8E0zT0dYGwXAnRoCKkBpnIbp8UHXkYxp/TujsaskyCJWowE7NG jbJlSJ1D3obz0cfKzTYMIeuQw56OAQueD8z0HTJNX6oMN4cMkiNkGwJGdcJPrLXw spQtmF0X7qgi285yMpHN82SgreJ0y5nbiuCy+BQFIJ+0N2105Oh7pTkonfGU5sgV o7i5S3BwCuebGZu8nOGF/seCFgM2sxrSvSdRQNL6q0CzjyQmGEBsOSi7qCbVzgM8 7TsxK5QMaZys3Xbv5l517BuX5iZLFy2he5OtERQ+GRnLWsYWsY5mc4LgK6MbiyOb Bswmf34upJ+pd1PCvlNHS+RgyYQi/ub5tp7Ur0zjwDbWY3paeK7OEKMAp+/Q+7xF tv8WwtSPpQifpyOK7QlDGu2ccX0iLbXeH6xitBfaHmrqU7M3KgwFWOIQCp42GkL0 /pBWV5b/goBXtSQS9VCGkPL6WQlX8VOiqDz9Ctz6o/nLG18Id/crQ48Q0SkhEivL pt8IhChaLQ== =FN/q -----END PGP SIGNATURE----- gpgv: unknown type of key resource 'trustedkeys.kbx' gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error gpgv: Signature made Sun Apr 26 23:39:49 2020 UTC gpgv: using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2 gpgv: issuer "ucko@debian.org" gpgv: Can't check signature: No public key dpkg-source: warning: failed to verify signature on ./ncbi-blast+_2.10.0-1.dsc dpkg-source: info: extracting ncbi-blast+ in /<> dpkg-source: info: unpacking ncbi-blast+_2.10.0.orig.tar.gz dpkg-source: info: unpacking ncbi-blast+_2.10.0-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_gnutls_version_check dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying system_mbedtls_only dpkg-source: info: applying reprobuild dpkg-source: info: applying spelling dpkg-source: info: applying support_gcc10 dpkg-source: info: applying run_perl_directly Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mipsel DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=helmut PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=unstable-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1003 SCHROOT_GROUP=helmut SCHROOT_SESSION_ID=unstable-amd64-sbuild-382b1d57-e383-4c50-ad17-1b625807be26 SCHROOT_UID=1003 SCHROOT_USER=helmut SHELL=/bin/sh USER=helmut dpkg-buildpackage ----------------- Command: dpkg-buildpackage -amipsel -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.10.0-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type mipsel-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mipsel dpkg-source: info: using options from ncbi-blast+-2.10.0/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean --sourcedirectory=c++ dh_auto_clean -O--sourcedirectory=c\+\+ dh_autoreconf_clean -O--sourcedirectory=c\+\+ debian/rules override_dh_clean make[1]: Entering directory '/<>' cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ ../../../BUILD.native/build/new_module.sh $mod \ purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found /bin/sh: 6: ../../../BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:148: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module rm -f c++/include/common/ncbi_revision.h find -name check_exec.pid -delete rm -rf c++/BUILD c++/BUILD.native fakehome mv configure.orig.save c++/configure.orig mv c++/src/util/lmdb/Makefile.orig.save c++/src/util/lmdb/Makefile.orig mv c++/src/util/lmdbxx/Makefile.orig.save c++/src/util/lmdbxx/Makefile.orig mv c++/src/util/lmdbxx/lmdb++.h.orig.save c++/src/util/lmdbxx/lmdb++.h.orig make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=c++ dh_update_autotools_config -a -O--sourcedirectory=c\+\+ dh_autoreconf -a -O--sourcedirectory=c\+\+ debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' cd c++ && PREBUILT_PTB_EXE=bootstrap \ ./configure --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-downloaded-vdb --without-sse42 CFLAGS_FOR_BUILD="-g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed" --without-objects \ --without-algo --without-app --with-build-root=BUILD.native || \ (tail -v -n +0 config.log BUILD.native/status/config.log; exit 1) configure: loading site script /etc/dpkg-cross/cross-config.mipsel configure: creating cache config.cache configure: WARNING: --with(out)-objects is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-algo is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking Subversion revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking for C compiler default output file name... a.out checking whether the C compiler works... yes checking whether we are cross compiling... no checking for suffix of executables... checking for suffix of object files... o checking whether we are using the GNU C compiler... yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for gcc... gcc checking whether we are using the GNU C compiler... (cached) yes checking whether gcc accepts -g... yes checking for gcc option to accept ISO C89... none needed checking how to run the C preprocessor... gcc -E checking for g++... g++ checking whether we are using the GNU C++ compiler... yes checking whether g++ accepts -g... yes adjusted C compiler: /usr/bin/gcc adjusted C++ compiler: /usr/bin/g++ checking whether /usr/bin/gcc has an option to export all symbols... -Wl,-export-dynamic checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags... yes checking whether /usr/bin/gcc has an option to discard unneeded shared libraries... -Wl,--as-needed checking whether /usr/bin/gcc has an option to link in whole static archives... -Wl,--whole-archive checking whether _LIBCPP_VERSION is declared... no checking how to enable C++ '14 features in /usr/bin/g++ ... -std=gnu++14 checking how to enable C '11 or at least '99 features in /usr/bin/gcc ... -std=gnu11 -fgnu89-inline checking for dpkg-architecture... /usr/bin/dpkg-architecture checking for gawk... no checking for mawk... mawk checking for GNU make... /usr/bin/make checking for /usr/bin/make... /usr/bin/make checking whether ln -s works... yes checking for ranlib... ranlib checking for ar... ar cr checking ranlib's effectiveness... neutral checking for strip... strip checking whether strip loses runtime type information... no checking for ccache... no checking for tail... /usr/bin/tail checking whether /usr/bin/tail accepts modern syntax (-n N)... yes checking for basename... /usr/bin/basename checking for sed... /bin/sed checking for touch... /bin/touch checking for grep that handles long lines and -e... /bin/grep checking for egrep... /bin/grep -E checking how to run /bin/grep -E quietly... /bin/grep -E -q checking for valgrind... no checking for ldd... /usr/bin/ldd checking whether /usr/bin/ldd accepts -r... yes checking for uuidgen... no checking for cd_reporter... no checking how to run the C++ preprocessor... /usr/bin/g++ -std=gnu++14 -E checking for ANSI C header files... yes checking for sys/types.h... yes checking for sys/stat.h... yes checking for stdlib.h... yes checking for string.h... yes checking for memory.h... yes checking for strings.h... yes checking for inttypes.h... yes checking for stdint.h... yes checking for unistd.h... yes checking for size_t... yes checking for size_t... (cached) yes checking size of size_t... 8 checking for amq... no checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined... yes checking how to run the C preprocessor... gcc -E checking whether cross-directory hard links work... yes checking iostream usability... yes checking iostream presence... yes checking for iostream... yes checking iostream.h usability... no checking iostream.h presence... no checking for iostream.h... no checking fstream usability... yes checking fstream presence... yes checking for fstream... yes checking fstream.h usability... no checking fstream.h presence... no checking for fstream.h... no checking strstream usability... yes checking strstream presence... yes checking for strstream... yes checking strstream.h usability... no checking strstream.h presence... no checking for strstream.h... no checking strstrea.h usability... no checking strstrea.h presence... no checking for strstrea.h... no checking for inttypes.h... (cached) yes checking limits usability... yes checking limits presence... yes checking for limits... yes checking limits.h usability... yes checking limits.h presence... yes checking for limits.h... yes checking for unistd.h... (cached) yes checking windows.h usability... no checking windows.h presence... no checking for windows.h... no checking for wstring... yes checking for socklen_t... yes checking atomic.h usability... no checking atomic.h presence... no checking for atomic.h... no checking cpuid.h usability... yes checking cpuid.h presence... yes checking for cpuid.h... yes checking dlfcn.h usability... yes checking dlfcn.h presence... yes checking for dlfcn.h... yes checking ieeefp.h usability... no checking ieeefp.h presence... no checking for ieeefp.h... no checking poll.h usability... yes checking poll.h presence... yes checking for poll.h... yes checking sys/epoll.h usability... yes checking sys/epoll.h presence... yes checking for sys/epoll.h... yes checking sys/mount.h usability... yes checking sys/mount.h presence... yes checking for sys/mount.h... yes checking sys/sockio.h usability... no checking sys/sockio.h presence... no checking for sys/sockio.h... no checking sys/statvfs.h usability... yes checking sys/statvfs.h presence... yes checking for sys/statvfs.h... yes checking sys/sysinfo.h usability... yes checking sys/sysinfo.h presence... yes checking for sys/sysinfo.h... yes checking sys/vfs.h usability... yes checking sys/vfs.h presence... yes checking for sys/vfs.h... yes checking x86intrin.h usability... yes checking x86intrin.h presence... yes checking for x86intrin.h... yes checking alloca.h usability... yes checking alloca.h presence... yes checking for alloca.h... yes checking arpa/inet.h usability... yes checking arpa/inet.h presence... yes checking for arpa/inet.h... yes checking dirent.h usability... yes checking dirent.h presence... yes checking for dirent.h... yes checking errno.h usability... yes checking errno.h presence... yes checking for errno.h... yes checking fcntl.h usability... yes checking fcntl.h presence... yes checking for fcntl.h... yes checking getopt.h usability... yes checking getopt.h presence... yes checking for getopt.h... yes checking langinfo.h usability... yes checking langinfo.h presence... yes checking for langinfo.h... yes checking libgen.h usability... yes checking libgen.h presence... yes checking for libgen.h... yes checking locale.h usability... yes checking locale.h presence... yes checking for locale.h... yes checking malloc.h usability... yes checking malloc.h presence... yes checking for malloc.h... yes checking net/inet/in.h usability... no checking net/inet/in.h presence... no checking for net/inet/in.h... no checking netdb.h usability... yes checking netdb.h presence... yes checking for netdb.h... yes checking netinet/in.h usability... yes checking netinet/in.h presence... yes checking for netinet/in.h... yes checking netinet/tcp.h usability... yes checking netinet/tcp.h presence... yes checking for netinet/tcp.h... yes checking paths.h usability... yes checking paths.h presence... yes checking for paths.h... yes checking select.h usability... no checking select.h presence... no checking for select.h... no checking signal.h usability... yes checking signal.h presence... yes checking for signal.h... yes checking stdbool.h usability... yes checking stdbool.h presence... yes checking for stdbool.h... yes checking stddef.h usability... yes checking stddef.h presence... yes checking for stddef.h... yes checking sys/eventfd.h usability... yes checking sys/eventfd.h presence... yes checking for sys/eventfd.h... yes checking sys/file.h usability... yes checking sys/file.h presence... yes checking for sys/file.h... yes checking sys/ioctl.h usability... yes checking sys/ioctl.h presence... yes checking for sys/ioctl.h... yes checking sys/param.h usability... yes checking sys/param.h presence... yes checking for sys/param.h... yes checking sys/resource.h usability... yes checking sys/resource.h presence... yes checking for sys/resource.h... yes checking sys/select.h usability... yes checking sys/select.h presence... yes checking for sys/select.h... yes checking sys/socket.h usability... yes checking sys/socket.h presence... yes checking for sys/socket.h... yes checking sys/time.h usability... yes checking sys/time.h presence... yes checking for sys/time.h... yes checking sys/wait.h usability... yes checking sys/wait.h presence... yes checking for sys/wait.h... yes checking valgrind/memcheck.h usability... no checking valgrind/memcheck.h presence... no checking for valgrind/memcheck.h... no checking wchar.h usability... yes checking wchar.h presence... yes checking for wchar.h... yes checking whether time.h and sys/time.h may both be included... yes checking cxxabi.h usability... yes checking cxxabi.h presence... yes checking for cxxabi.h... yes checking whether abi::__cxa_demangle is declared... yes checking for gethostbyname_r... 6 checking for gethostbyaddr_r... 8 checking for getservbyname_r... 6 checking for getpwuid_r... 5 checking for getlogin_r... yes checking for localtime_r... yes checking for pthread_setconcurrency... yes checking for pthread_atfork... yes checking return type of localtime_r... struct checking whether pthread mutexes are available... yes checking for vprintf... yes checking for _doprnt... no checking for alarm... yes checking for asprintf... yes checking for atoll... yes checking for basename... yes checking for dbopen... no checking for daemon... yes checking for euidaccess... yes checking for eventfd... yes checking for fseeko... yes checking for fstat... yes checking for getgrouplist... yes checking for gethrtime... no checking for getopt... yes checking for getpagesize... yes checking for getpass... yes checking for getpassphrase... no checking for getpwuid... yes checking for getrusage... yes checking for gettimeofday... yes checking for getuid... yes checking for lchown... yes checking for lutimes... yes checking for malloc_options... no checking for memrchr... yes checking for nl_langinfo... yes checking for poll... yes checking for putenv... yes checking for readpassphrase... no checking for readv... yes checking for select... yes checking for setenv... yes checking for setitimer... yes checking for setrlimit... yes checking for snprintf... yes checking for statfs... yes checking for statvfs... yes checking for strcasecmp... yes checking for strdup... yes checking for strlcat... no checking for strlcpy... no checking for strndup... yes checking for strnlen... yes checking for strsep... yes checking for strtok_r... yes checking for sysmp... no checking for timegm... yes checking for usleep... yes checking for utimes... yes checking for vasprintf... yes checking for vsnprintf... yes checking for writev... yes checking return type of signal handlers... void checking whether select updates the timeout when interrupted... yes checking whether strcasecmp treats letters as lowercase... yes checking for Linux-like sysinfo with 1 arg... yes checking for getloadavg... yes checking for readdir_r... 3 checking whether stdio supports locking... yes checking for an ANSI C-conforming const... yes checking whether byte ordering is bigendian... (cached) no checking whether char is unsigned... (cached) no checking for char... yes checking size of char... 1 checking for double... yes checking size of double... 8 checking for float... yes checking size of float... 4 checking for int... yes checking size of int... (cached) 4 checking for long... yes checking size of long... (cached) 4 checking for long double... yes checking size of long double... 16 checking for long long... yes checking size of long long... (cached) 8 checking for short... yes checking size of short... 2 checking for void*... yes checking size of void*... 8 checking for wchar_t... yes checking size of wchar_t... 4 checking for __int64... no checking size of __int64... 0 checking for intptr_t... yes checking for uintptr_t... yes checking for struct sockaddr_in.sin_len... no checking for struct tm.tm_zone... yes checking for struct tm.__tm_zone... no checking whether function prototypes can use throw(...)... yes checking for ios(_base)::register_callback... yes checking for SysV semaphores... yes checking for union semun... no checking which way the stack grows... up checking whether the preprocessor supports C99-style variadic macros... yes checking whether the preprocessor supports GNU-style variadic macros... yes checking syntax for marking deprecated functions... __attribute__((__deprecated__)) checking how to force inlining... inline __attribute__((always_inline)) checking whether the C compiler supports __attribute__((destructor))... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default")))... (cached) unnecessary checking whether the C compiler supports C99 restrict... __restrict__ checking whether the C++ compiler supports C99 restrict... __restrict__ checking syntax for marking functions that never return... __attribute__((__noreturn__)) checking syntax for marking functions whose result should be checked... __attribute__((warn_unused_result)) checking syntax for declaring thread-local variables... __thread checking syntax for marking types as packed to save memory... __attribute__((__packed__)) checking whether FIONBIO requires BSD_COMP to be defined... no checking whether INADDR_NONE is defined... yes checking whether unaligned reads are permissible... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes... yes checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always... yes checking whether /usr/bin/g++ -std=gnu++14 supports __builtin_bswap32... yes checking whether /usr/bin/g++ -std=gnu++14 supports __builtin_expect... yes checking whether in-house NCBI resources are available... no checking for gethostbyname in -lnsl... yes checking for connect in -lsocket... no checking for res_search in -lresolv... yes checking for inet_ntoa_r... no checking for getaddrinfo... yes checking for getnameinfo... yes checking for freehostent... no checking for gethostent_r... yes checking for getipnodebyaddr... no checking for getipnodebyname... no checking for inet_ntop... yes checking for socketpair... yes checking for erf... yes checking for library containing kstat_open... no checking for library containing rstat... no checking for library containing setkey... no checking for library containing dlopen... -ldl checking for library containing uuid_generate... no checking for library containing fuse_loop... no checking for library containing clock_gettime... none required checking for library containing cplus_demangle... no checking for clock_gettime... yes checking for nanosleep... yes checking for pthread_cond_timedwait_relative_np... no checking for pthread_condattr_setclock... yes checking for sched_yield... yes checking whether CLOCK_MONOTONIC is declared... yes checking whether CLOCK_SGI_CYCLE is declared... no checking whether CLOCK_REALTIME is declared... yes checking for library containing iconv... none required checking for iconv declaration... extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); checking for libdw... no checking for libbackward... no checking for libz... no configure: using local zlib copy in util/compress/zlib checking for libbz2... no configure: using local bzlib copy in util/compress/bzip2 checking for libpcre... no configure: using local PCRE copy in util/regexp configure: using local mbedTLS copy in connect/mbedtls checking for libgmp... no checking for libgcrypt-config... (cached) no checking for libhogweed... no checking for libgnutls-config... (cached) no checking for libssl... no checking for krb5-config... no checking for libgssapi_krb5... no checking for libcurl... no checking for reentrant Sybase libraries... no checking for Sybase... no checking for FreeTDS... no checking for mysql_config... no checking for Berkeley DB libraries... no checking for python... no checking for python2.5... no checking for python2.6... no checking for python2.7... no checking for python3... /usr/bin/python3 checking for perl... /usr/bin/perl checking for usable Perl libraries... no checking Boost version... 1_67 checking for Boost library name tag... -gcc90-mt-1_67-64 (autodetected) checking for Boost.Regex... no checking for Boost.Spirit... yes checking for Boost.System... no checking for Boost.Chrono... no checking for Boost.Filesystem... no checking for Boost.Iostreams... no checking for Boost.Program-Options... no checking for Boost.Serialization... no checking for Boost.Test... included-only checking for Boost.Thread... no checking for the NCBI C toolkit... no checking for X... no checking for XextCreateExtension in -lXext... no checking for XtMainLoop in -lXt... no checking for XmuMakeAtom in -lXmu... no checking for OpenGL... no checking for wx-config... no checking for wxWidgets... no checking for FastCGI libraries... no checking for FCGX_Accept_r... no checking for NCBI SSS directories in /sss/BUILD... no checking for SP directories... no checking for ORBacus... no checking for ICU... no checking for libexpat... no checking for libsablot... no checking for libxml2... no checking for libxslt... no checking for xsltproc... : checking for libexslt... no checking for Xerces-C++... no checking for Xalan-C++... no checking for Zorba... no checking for libsqlite3... no checking for liboechem... no checking for libdrmaa... no checking for libmuparser... no checking for libhdf5_cpp... no checking for libjpeg... no checking for libpng... no checking for libtiff... no checking for libgif... no checking for libungif... no checking for libXpm... no checking for freetype-config... no /<>/c++/src/build-system/configure: line 47313: cd: /<>/fakehome: No such file or directory checking for libftgl... no checking for libmagic... no checking for libmimetic... no checking for soapcpp2... no checking for wsdl2h... no checking for libgsoapssl++... no checking for libavrocpp... no checking for USC Cereal... no checking for libsasl2... no checking for libmongoclient... no checking for libmongocxx... no checking for libleveldb... no checking for libgmock... no checking lapacke.h usability... no checking lapacke.h presence... no checking for lapacke.h... no checking lapacke/lapacke.h usability... no checking lapacke/lapacke.h presence... no checking for lapacke/lapacke.h... no checking clapack.h usability... no checking clapack.h presence... no checking for clapack.h... no checking Accelerate/Accelerate.h usability... no checking Accelerate/Accelerate.h presence... no checking for Accelerate/Accelerate.h... no checking for liblapack... no checking for liblmdb... no configure: using local LMDB copy in util/lmdb checking for libuv... no checking for libssh2... no checking for libcassandra... no checking for libnghttp2... no checking for libh2o... no checking for influxdb-cpp... no checking for libxlsxwriter... no checking for libprotobuf... no checking gsl/gsl usability... no checking gsl/gsl presence... no checking for gsl/gsl... no checking for libaws-cpp-sdk-s3... no configure: looking for configurables below /<>/c++... configure: ...done configure: updating cache config.cache configure: creating /<>/c++/BUILD.native/status/config.status config.status: creating /<>/c++/BUILD.native/build/util/xregexp/Makefile config.status: creating /<>/c++/BUILD.native/build/util/tables/Makefile config.status: creating /<>/c++/BUILD.native/build/util/sequtil/Makefile config.status: creating /<>/c++/BUILD.native/build/util/regexp/Makefile config.status: creating /<>/c++/BUILD.native/build/util/lmdbxx/Makefile config.status: creating /<>/c++/BUILD.native/build/util/lmdb/Makefile config.status: creating /<>/c++/BUILD.native/build/util/creaders/Makefile config.status: creating /<>/c++/BUILD.native/build/util/compress/zlib/Makefile config.status: creating /<>/c++/BUILD.native/build/util/compress/bzip2/Makefile config.status: creating /<>/c++/BUILD.native/build/util/compress/api/Makefile config.status: creating /<>/c++/BUILD.native/build/util/compress/Makefile config.status: creating /<>/c++/BUILD.native/build/util/bitset/Makefile config.status: creating /<>/c++/BUILD.native/build/util/Makefile config.status: creating /<>/c++/BUILD.native/build/serial/datatool/Makefile config.status: creating /<>/c++/BUILD.native/build/serial/Makefile config.status: creating /<>/c++/BUILD.native/build/objtools/simple/Makefile config.status: creating /<>/c++/BUILD.native/build/objtools/seqmasks_io/Makefile config.status: creating 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config.status: creating /<>/c++/BUILD.native/build/objmgr/Makefile config.status: creating /<>/c++/BUILD.native/build/misc/third_party_static/Makefile config.status: creating /<>/c++/BUILD.native/build/misc/third_party/Makefile config.status: creating /<>/c++/BUILD.native/build/misc/jsonwrapp/test/Makefile config.status: creating /<>/c++/BUILD.native/build/misc/jsonwrapp/Makefile config.status: creating /<>/c++/BUILD.native/build/misc/Makefile config.status: creating /<>/c++/BUILD.native/build/html/Makefile config.status: creating /<>/c++/BUILD.native/build/db/sqlite/Makefile config.status: creating /<>/c++/BUILD.native/build/db/Makefile config.status: creating /<>/c++/BUILD.native/build/corelib/ncbicfg.c config.status: creating /<>/c++/BUILD.native/build/corelib/Makefile.precompile config.status: creating /<>/c++/BUILD.native/build/corelib/Makefile config.status: creating /<>/c++/BUILD.native/build/connect/services/Makefile config.status: creating 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/<>/c++/BUILD.native/build/cmake/ncbiconf_msvc_site.h config.status: creating /<>/c++/BUILD.native/build/cmake/config.cmake.h config.status: creating /<>/c++/BUILD.native/build/cmake/NCBI-ToolkitConfig.cmake config.status: creating /<>/c++/BUILD.native/build/check.cfg config.status: creating /<>/c++/BUILD.native/build/Makefile.top_builddir config.status: creating /<>/c++/BUILD.native/build/Makefile.rules_with_autodep config.status: creating /<>/c++/BUILD.native/build/Makefile.rules config.status: creating /<>/c++/BUILD.native/build/Makefile.protobuf config.status: creating /<>/c++/BUILD.native/build/Makefile.null config.status: creating /<>/c++/BUILD.native/build/Makefile.mk config.status: creating /<>/c++/BUILD.native/build/Makefile.metal.tmpl config.status: creating /<>/c++/BUILD.native/build/Makefile.metal config.status: creating /<>/c++/BUILD.native/build/Makefile.meta config.status: creating /<>/c++/BUILD.native/build/Makefile.lib.tmpl config.status: creating /<>/c++/BUILD.native/build/Makefile.lib config.status: creating /<>/c++/BUILD.native/build/Makefile.is_dll_support config.status: creating /<>/c++/BUILD.native/build/build-system/Makefile config.status: creating /<>/c++/BUILD.native/build/Makefile.dll config.status: creating /<>/c++/BUILD.native/build/Makefile.both config.status: creating /<>/c++/BUILD.native/build/Makefile.app.tmpl config.status: creating /<>/c++/BUILD.native/build/Makefile config.status: creating /<>/c++/./Makefile config.status: creating /<>/c++/BUILD.native/inc/common/ncbi_build_ver.h config.status: creating /<>/c++/include/common/ncbi_revision.h config.status: creating /<>/c++/BUILD.native/inc/ncbiconf_unix.h config.status: executing default commands /<>/c++/BUILD.native/build/corelib/ncbicfg.c is updated /<>/c++/BUILD.native/inc/common/ncbi_build_ver.h is updated make[2]: Entering directory '/<>/c++/BUILD.native/build/build-system/helpers' /usr/bin/make -f /<>/c++/BUILD.native/build/Makefile.app.tmpl srcdir=/<>/c++/src/build-system/helpers TMPL=run_with_lock -kw all make[3]: Entering directory '/<>/c++/BUILD.native/build/build-system/helpers' gcc -c -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE -DNCBI_APP_BUILT_AS=run_with_lock /<>/c++/src/build-system/helpers/run_with_lock.c -o run_with_lock.o gcc -Wl,-rpath,/<>/c++/BUILD.native/lib -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -fPIE -pie run_with_lock.o -L/<>/c++/BUILD.native/lib -lm -lpthread -o run_with_lock strip run_with_lock /bin/bash /<>/c++/scripts/common/impl/if_diff.sh /bin/ln -f run_with_lock /<>/c++/BUILD.native/bin /bin/ln -f run_with_lock /<>/c++/BUILD.native/bin/run_with_lock make[3]: Leaving directory '/<>/c++/BUILD.native/build/build-system/helpers' make[2]: Leaving directory '/<>/c++/BUILD.native/build/build-system/helpers' project_tree_builder is not found at /<>/c++/BUILD.native/build/build-system/project_tree_builder/project_tree_builder Will build project_tree_builder locally ********************************************************************** Building project_tree_builder ********************************************************************** make[2]: Entering directory '/<>/c++/BUILD.native/build/corelib' make[3]: Entering directory '/<>/c++/BUILD.native/build/corelib' make[4]: Entering directory '/<>/c++/BUILD.native/build/corelib' /usr/bin/make[4] (Makefile.precompile): Nothing to be done for `all'. make[4]: Leaving directory '/<>/c++/BUILD.native/build/corelib' /usr/bin/make[3] (Makefile.corelib.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_mt.lib): Nothing to be done for `export-headers'. /usr/bin/make[3] (Makefile.test_boost.lib): Nothing to be done for `export-headers'. /usr/bin/make -f /<>/c++/BUILD.native/build/Makefile.lib.tmpl srcdir=/<>/c++/src/corelib TMPL=corelib -w all In file included from /<>/c++/include/corelib/error_codes.hpp:38, from /<>/c++/src/corelib/ncbi_os_unix.cpp:33: /<>/c++/include/corelib/ncbidiag.hpp:1922:25: error: 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, Int8)' cannot be overloaded with 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, long int)' 1922 | CDiagContext_Extra& Print(const string& name, Int8 value); | ^~~~~ /<>/c++/include/corelib/ncbidiag.hpp:1919:25: note: previous declaration 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, long int)' 1919 | CDiagContext_Extra& Print(const string& name, long value); | ^~~~~ /<>/c++/include/corelib/ncbidiag.hpp:1923:25: error: 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, Uint8)' cannot be overloaded with 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, long unsigned int)' 1923 | CDiagContext_Extra& Print(const string& name, Uint8 value); | ^~~~~ /<>/c++/include/corelib/ncbidiag.hpp:1920:25: note: previous declaration 'ncbi::CDiagContext_Extra& ncbi::CDiagContext_Extra::Print(const string&, long unsigned int)' 1920 | CDiagContext_Extra& Print(const string& name, unsigned long value); | ^~~~~ In file included from /<>/c++/include/corelib/ncbiobj.hpp:41, from /<>/c++/include/corelib/ncbiargs.hpp:84, from /<>/c++/include/corelib/ncbiapp_api.hpp:43, from /<>/c++/include/corelib/ncbi_param.hpp:41, from /<>/c++/include/corelib/ncbifile.hpp:55, from /<>/c++/src/corelib/ncbi_os_unix.cpp:35: /<>/c++/include/corelib/ddumpable.hpp:110:10: error: 'void ncbi::CDebugDumpContext::Log(const string&, Int8, const string&)' cannot be overloaded with 'void ncbi::CDebugDumpContext::Log(const string&, long int, const string&)' 110 | void Log(const string& name, Int8 value, | ^~~ /<>/c++/include/corelib/ddumpable.hpp:105:10: note: previous declaration 'void ncbi::CDebugDumpContext::Log(const string&, long int, const string&)' 105 | void Log(const string& name, long value, | ^~~ /<>/c++/include/corelib/ddumpable.hpp:112:10: error: 'void ncbi::CDebugDumpContext::Log(const string&, Uint8, const string&)' cannot be overloaded with 'void ncbi::CDebugDumpContext::Log(const string&, long unsigned int, const string&)' 112 | void Log(const string& name, Uint8 value, | ^~~ /<>/c++/include/corelib/ddumpable.hpp:107:10: note: previous declaration 'void ncbi::CDebugDumpContext::Log(const string&, long unsigned int, const string&)' 107 | void Log(const string& name, unsigned long value, | ^~~ make[4]: *** [/<>/c++/BUILD.native/build/Makefile.rules:88: ncbi_os_unix.o] Error 1 make[4]: Entering directory '/<>/c++/BUILD.native/build/corelib' /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -I/<>/c++/BUILD.native/inc -I/<>/c++/include /<>/c++/src/corelib/ncbi_os_unix.cpp -o ncbi_os_unix.o make[4]: Leaving directory '/<>/c++/BUILD.native/build/corelib' FAILED: src/corelib/Makefile.corelib.lib make[4]: Entering directory '/<>/c++/BUILD.native/build/corelib' /bin/rm -f libxncbi.a .xncbi.dep .libxncbi.a.stamp /bin/rm -f /<>/c++/BUILD.native/lib/libxncbi.a /<>/c++/BUILD.native/status/.xncbi.dep \ /<>/c++/BUILD.native/lib/libxncbi-static.a /<>/c++/BUILD.native/status/.xncbi-static.dep make[4]: Leaving directory '/<>/c++/BUILD.native/build/corelib' make[3]: *** [/<>/c++/src/build-system/Makefile.meta_l:318: all.nonusr] Error 2 make[3]: Leaving directory '/<>/c++/BUILD.native/build/corelib' make[2]: *** [/<>/c++/src/build-system/Makefile.meta_l:276: all_l.real] Error 2 make[2]: Leaving directory '/<>/c++/BUILD.native/build/corelib' ------------------------------------------------------ Current dir: /<>/c++/BUILD.native/build/corelib [create_flat_makefile.sh] FAILED (status 2): make /bin/grep: /<>/c++/BUILD.native/build/Flat.configuration_log: No such file or directory config.status: error: flat makefile generation failed. ==> config.log <== ## ---------------- ## ## Cache variables. ## ## ---------------- ## _cv_gnu_make_command=/usr/bin/make ac_cv_build=x86_64-pc-linux-gnu ac_cv_build_prog_CPP='gcc -E' ac_cv_build_prog_cc_c89= ac_cv_build_prog_cc_g=yes ac_cv_c_bigendian=no ac_cv_c_char_unsigned=no ac_cv_c_compiler_gnu=yes ac_cv_c_const=yes ac_cv_cxx_compiler_gnu=yes ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value='-Wdate-time -D_FORTIFY_SOURCE=2' ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed' ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_FCGX_Accept_r=no ac_cv_func__doprnt=no ac_cv_func_alarm=yes ac_cv_func_asprintf=yes ac_cv_func_atoll=yes ac_cv_func_basename=yes ac_cv_func_clock_gettime=yes ac_cv_func_daemon=yes ac_cv_func_dbopen=no ac_cv_func_erf=yes ac_cv_func_euidaccess=yes ac_cv_func_eventfd=yes ac_cv_func_freehostent=no ac_cv_func_fseeko=yes ac_cv_func_fstat=yes ac_cv_func_getaddrinfo=yes ac_cv_func_getgrouplist=yes ac_cv_func_gethostent_r=yes ac_cv_func_gethrtime=no ac_cv_func_getipnodebyaddr=no ac_cv_func_getipnodebyname=no ac_cv_func_getloadavg=yes ac_cv_func_getnameinfo=yes ac_cv_func_getopt=yes ac_cv_func_getpagesize=yes ac_cv_func_getpass=yes ac_cv_func_getpassphrase=no ac_cv_func_getpwuid=yes ac_cv_func_getrusage=yes ac_cv_func_gettimeofday=yes ac_cv_func_getuid=yes ac_cv_func_inet_ntoa_r=no ac_cv_func_inet_ntop=yes ac_cv_func_lchown=yes ac_cv_func_localtime_r=yes ac_cv_func_lutimes=yes ac_cv_func_malloc_0_nonnull=yes ac_cv_func_malloc_options=no ac_cv_func_memrchr=yes ac_cv_func_nanosleep=yes ac_cv_func_nl_langinfo=yes ac_cv_func_poll=yes ac_cv_func_pthread_atfork=yes ac_cv_func_pthread_cond_timedwait_relative_np=no ac_cv_func_pthread_condattr_setclock=yes ac_cv_func_pthread_setconcurrency=yes ac_cv_func_putenv=yes ac_cv_func_readpassphrase=no ac_cv_func_readv=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_sched_yield=yes ac_cv_func_select=yes ac_cv_func_setenv=yes ac_cv_func_setitimer=yes ac_cv_func_setpgrp_void=yes ac_cv_func_setrlimit=yes ac_cv_func_snprintf=yes ac_cv_func_socketpair=yes ac_cv_func_statfs=yes ac_cv_func_statvfs=yes ac_cv_func_strcasecmp=yes ac_cv_func_strdup=yes ac_cv_func_strlcat=no ac_cv_func_strlcpy=no ac_cv_func_strndup=yes ac_cv_func_strnlen=yes ac_cv_func_strsep=yes ac_cv_func_strtok_r=yes ac_cv_func_sysmp=no ac_cv_func_timegm=yes ac_cv_func_usleep=yes ac_cv_func_utimes=yes ac_cv_func_vasprintf=yes ac_cv_func_vprintf=yes ac_cv_func_vsnprintf=yes ac_cv_func_which_localtime_r=struct ac_cv_func_writev=yes ac_cv_have_decl_CLOCK_MONOTONIC=yes ac_cv_have_decl_CLOCK_REALTIME=yes ac_cv_have_decl_CLOCK_SGI_CYCLE=no ac_cv_have_decl__LIBCPP_VERSION=no ac_cv_have_decl_abi____cxa_demangle=yes ac_cv_have_x=have_x=no ac_cv_header_Accelerate_Accelerate_h=no ac_cv_header_alloca_h=yes ac_cv_header_arpa_inet_h=yes ac_cv_header_atomic_h=no ac_cv_header_clapack_h=no ac_cv_header_cpuid_h=yes ac_cv_header_cxxabi_h=yes ac_cv_header_dirent_h=yes ac_cv_header_dlfcn_h=yes ac_cv_header_errno_h=yes ac_cv_header_fcntl_h=yes ac_cv_header_fstream=yes ac_cv_header_fstream_h=no ac_cv_header_getopt_h=yes ac_cv_header_gsl_gsl=no ac_cv_header_ieeefp_h=no ac_cv_header_inttypes_h=yes ac_cv_header_iostream=yes ac_cv_header_iostream_h=no ac_cv_header_langinfo_h=yes ac_cv_header_lapacke_h=no ac_cv_header_lapacke_lapacke_h=no ac_cv_header_libgen_h=yes ac_cv_header_limits=yes ac_cv_header_limits_h=yes ac_cv_header_locale_h=yes ac_cv_header_malloc_h=yes ac_cv_header_memory_h=yes ac_cv_header_net_inet_in_h=no ac_cv_header_netdb_h=yes ac_cv_header_netinet_in_h=yes ac_cv_header_netinet_tcp_h=yes ac_cv_header_paths_h=yes ac_cv_header_poll_h=yes ac_cv_header_select_h=no ac_cv_header_signal_h=yes ac_cv_header_stdbool_h=yes ac_cv_header_stdc=yes ac_cv_header_stddef_h=yes ac_cv_header_stdint_h=yes ac_cv_header_stdlib_h=yes ac_cv_header_string_h=yes ac_cv_header_strings_h=yes ac_cv_header_strstrea_h=no ac_cv_header_strstream=yes ac_cv_header_strstream_h=no ac_cv_header_sys_epoll_h=yes ac_cv_header_sys_eventfd_h=yes ac_cv_header_sys_file_h=yes ac_cv_header_sys_ioctl_h=yes ac_cv_header_sys_mount_h=yes ac_cv_header_sys_param_h=yes ac_cv_header_sys_resource_h=yes ac_cv_header_sys_select_h=yes ac_cv_header_sys_socket_h=yes ac_cv_header_sys_sockio_h=no ac_cv_header_sys_stat_h=yes ac_cv_header_sys_statvfs_h=yes ac_cv_header_sys_sysinfo_h=yes ac_cv_header_sys_time_h=yes ac_cv_header_sys_types_h=yes ac_cv_header_sys_vfs_h=yes ac_cv_header_sys_wait_h=yes ac_cv_header_time=yes ac_cv_header_unistd_h=yes ac_cv_header_valgrind_memcheck_h=no ac_cv_header_wchar_h=yes ac_cv_header_windows_h=no ac_cv_header_x86intrin_h=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_lib_Xext_XextCreateExtension=no ac_cv_lib_Xmu_XmuMakeAtom=no ac_cv_lib_Xt_XtMainLoop=no ac_cv_lib_nsl_gethostbyname=yes ac_cv_lib_resolv_res_search=yes ac_cv_lib_socket_connect=no ac_cv_member_struct_sockaddr_in_sin_len=no ac_cv_member_struct_tm___tm_zone=no ac_cv_member_struct_tm_tm_zone=yes ac_cv_objext=o ac_cv_path_BASENAME=/usr/bin/basename ac_cv_path_DPKG_ARCHITECTURE=/usr/bin/dpkg-architecture ac_cv_path_EGREP='/bin/grep -E' ac_cv_path_GREP=/bin/grep ac_cv_path_LDD=/usr/bin/ldd ac_cv_path_LIBGCRYPT_CONFIG=no ac_cv_path_LIBGNUTLS_CONFIG=no ac_cv_path_MAKE=/usr/bin/make ac_cv_path_PERL=/usr/bin/perl ac_cv_path_PYTHON3=/usr/bin/python3 ac_cv_path_SED=/bin/sed ac_cv_path_TAIL=/usr/bin/tail ac_cv_path_TOUCH=/bin/touch ac_cv_path_XSLTPROC=: ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_AR='ar cr' ac_cv_prog_AWK=mawk ac_cv_prog_CPP='gcc -E' ac_cv_prog_CXXCPP='/usr/bin/g++ -std=gnu++14 -E' ac_cv_prog_STRIP=strip ac_cv_prog_ac_ct_CC=gcc ac_cv_prog_ac_ct_CC_FOR_BUILD=gcc ac_cv_prog_ac_ct_CXX=g++ ac_cv_prog_ac_ct_RANLIB=ranlib ac_cv_prog_cc_c89= ac_cv_prog_cc_g=yes ac_cv_prog_cxx_g=yes ac_cv_search_clock_gettime='none required' ac_cv_search_cplus_demangle=no ac_cv_search_dlopen=-ldl ac_cv_search_fuse_loop=no ac_cv_search_iconv='none required' ac_cv_search_kstat_open=no ac_cv_search_rstat=no ac_cv_search_setkey=no ac_cv_search_uuid_generate=no ac_cv_sizeof___int64=0 ac_cv_sizeof_char=1 ac_cv_sizeof_char_p=4 ac_cv_sizeof_double=8 ac_cv_sizeof_float=4 ac_cv_sizeof_int=4 ac_cv_sizeof_long=4 ac_cv_sizeof_long_double=16 ac_cv_sizeof_long_long=8 ac_cv_sizeof_short=2 ac_cv_sizeof_size_t=8 ac_cv_sizeof_unsigned_int=4 ac_cv_sizeof_unsigned_long=4 ac_cv_sizeof_voidp=8 ac_cv_sizeof_wchar_t=4 ac_cv_type___int64=no ac_cv_type_char=yes ac_cv_type_double=yes ac_cv_type_float=yes ac_cv_type_int=yes ac_cv_type_intptr_t=yes ac_cv_type_long=yes ac_cv_type_long_double=yes ac_cv_type_long_long=yes ac_cv_type_short=yes ac_cv_type_signal=void ac_cv_type_size_t=yes ac_cv_type_socklen_t=yes ac_cv_type_uintptr_t=yes ac_cv_type_union_semun=no ac_cv_type_voidp=yes ac_cv_type_wchar_t=yes ac_cv_type_wstring_linkable=yes am_cv_proto_iconv='extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft);' am_cv_proto_iconv_arg1= ax_cv_gnu_make_command=/usr/bin/make lt_cv_sys_lib_dlsearch_path_spec=' /lib/mipsel-linux-gnu /usr/lib/mipsel-linux-gnu /lib /usr/lib /usr/local/lib' ncbi_cv_c_attribute_destructor=yes ncbi_cv_c_attribute_visibility_default=unnecessary ncbi_cv_c_deprecation_syntax='__attribute__((__deprecated__))' ncbi_cv_c_forceinline='inline __attribute__((always_inline))' ncbi_cv_c_noreturn='__attribute__((__noreturn__))' ncbi_cv_c_packed='__attribute__((__packed__))' ncbi_cv_c_restrict=__restrict__ ncbi_cv_c_stdio_locked=yes ncbi_cv_c_tls_var=__thread ncbi_cv_c_warn_unused_result='__attribute__((warn_unused_result))' ncbi_cv_cc_aes=yes ncbi_cv_cc_fdiagnostics_color_always=yes ncbi_cv_cc_sse4_1=yes ncbi_cv_cc_unsafe_math=yes ncbi_cv_cc_vector_math=yes ncbi_cv_cpp_gnu_varargs=yes ncbi_cv_cpp_std_varargs=yes ncbi_cv_cxx_builtin_bswap32=yes ncbi_cv_cxx_builtin_expect=yes ncbi_cv_cxx_restrict=__restrict__ ncbi_cv_cxx_throw_spec=yes ncbi_cv_decl_fionbio_needs_bsd_comp=no ncbi_cv_decl_inaddr_none=yes ncbi_cv_func_gethostbyaddr_r=8 ncbi_cv_func_gethostbyname_r=6 ncbi_cv_func_getlogin_r=yes ncbi_cv_func_getpwuid_r=5 ncbi_cv_func_getservbyname_r=6 ncbi_cv_func_ios_register_callback=yes ncbi_cv_func_pthread_mutex=yes ncbi_cv_func_readdir_r=3 ncbi_cv_func_select_updates_timeout=yes ncbi_cv_func_strcasecmp_lc=yes ncbi_cv_func_sysinfo_1=yes ncbi_cv_lib_avro=no ncbi_cv_lib_aws_sdk=no ncbi_cv_lib_backward_cpp=no ncbi_cv_lib_berkeley_db=no ncbi_cv_lib_boost_chrono=no ncbi_cv_lib_boost_filesystem=no ncbi_cv_lib_boost_iostreams=no ncbi_cv_lib_boost_program_options=no ncbi_cv_lib_boost_regex=no ncbi_cv_lib_boost_serialization=no ncbi_cv_lib_boost_spirit=yes ncbi_cv_lib_boost_system=no ncbi_cv_lib_boost_test=included-only ncbi_cv_lib_boost_thread=no ncbi_cv_lib_boost_version=1_67 ncbi_cv_lib_boost_version_num=106700 ncbi_cv_lib_bz2=no ncbi_cv_lib_cassandra=no ncbi_cv_lib_cereal=no ncbi_cv_lib_ctools=no ncbi_cv_lib_curl=no ncbi_cv_lib_expat=no ncbi_cv_lib_fcgi=no ncbi_cv_lib_freetds=no ncbi_cv_lib_ftgl=no ncbi_cv_lib_gif=no ncbi_cv_lib_gmock=no ncbi_cv_lib_gmp=no ncbi_cv_lib_gsoap=no ncbi_cv_lib_h2o=no ncbi_cv_lib_hdf5=no ncbi_cv_lib_icu=no ncbi_cv_lib_influxdb=no ncbi_cv_lib_jpeg=no ncbi_cv_lib_krb5=no ncbi_cv_lib_lapack=no ncbi_cv_lib_leveldb=no ncbi_cv_lib_libdw=no ncbi_cv_lib_libexslt=no ncbi_cv_lib_libssh2=no ncbi_cv_lib_libuv=no ncbi_cv_lib_libxlsxwriter=no ncbi_cv_lib_libxml=no ncbi_cv_lib_libxslt=no ncbi_cv_lib_lmdb=no ncbi_cv_lib_magic=no ncbi_cv_lib_mimetic=no ncbi_cv_lib_mongodb3=no ncbi_cv_lib_mongodb=no ncbi_cv_lib_muparser=no ncbi_cv_lib_nettle=no ncbi_cv_lib_nghttp2=no ncbi_cv_lib_oechem=no ncbi_cv_lib_opengl=no ncbi_cv_lib_openssl=no ncbi_cv_lib_orbacus=no ncbi_cv_lib_pcre=no ncbi_cv_lib_perl=no ncbi_cv_lib_png=no ncbi_cv_lib_protobuf=no ncbi_cv_lib_python25=no ncbi_cv_lib_python26=no ncbi_cv_lib_python27=no ncbi_cv_lib_python3=no ncbi_cv_lib_python=no ncbi_cv_lib_sablot=no ncbi_cv_lib_sasl2=no ncbi_cv_lib_sge=no ncbi_cv_lib_sqlite3=no ncbi_cv_lib_sybase=no ncbi_cv_lib_sybase_r=no ncbi_cv_lib_tiff=no ncbi_cv_lib_ungif=no ncbi_cv_lib_wxwidgets=no ncbi_cv_lib_xalan_c=no ncbi_cv_lib_xerces_c=no ncbi_cv_lib_xpm=no ncbi_cv_lib_z=no ncbi_cv_lib_zorba=no ncbi_cv_prog_c_99='-std=gnu11 -fgnu89-inline' ncbi_cv_prog_cc_as_needed=-Wl,--as-needed ncbi_cv_prog_cc_export_all=-Wl,-export-dynamic ncbi_cv_prog_cc_new_dtags=yes ncbi_cv_prog_cc_whole_archive=-Wl,--whole-archive ncbi_cv_prog_cc_wl_no_asu=yes ncbi_cv_prog_cxx_14=-std=gnu++14 ncbi_cv_prog_cxx_stdlib_libcxx=no ncbi_cv_prog_ranlib_effect=neutral ncbi_cv_strip_loses_rtti=no ncbi_cv_sys_semaphores=yes ncbi_cv_sys_stack_dir=up ncbi_cv_sys_unaligned_reads=yes ncbi_cv_sys_xdir_ln=yes ## ----------------- ## ## Output variables. ## ## ----------------- ## AES_FLAG='-maes' ALLOW_UNDEF='' AMQ='' APP_LDFLAGS='' APP_LIBS_SETTING='$(LIBS)' APP_LIB_SETTING='$(LIB)' APP_NOCOPY='' APP_OR_NULL='app' AR='ar cr' AR_FILTER='' AR_WRAPPER='' AS_NEEDED='-Wl,--as-needed' AVROGENCPP='' AVRO_INCLUDE='' AVRO_LIBS='' AVRO_STATIC_LIBS='' AWK='mawk' AWS_SDK_INCLUDE='' AWS_SDK_LIBS='' AWS_SDK_STATIC_LIBS='' BACKWARD_CPP_INCLUDE='' BACKWARD_CPP_LIBS='' BASENAME='/usr/bin/basename' BDB_CACHE_LIB='' BDB_LIB='' BERKELEYDB_CXX_LIBS='' BERKELEYDB_CXX_STATIC_LIBS='' BERKELEYDB_INCLUDE='' BERKELEYDB_LIBS='' BERKELEYDB_STATIC_LIBS='' BINCOPY='/bin/bash $(top_srcdir)/scripts/common/impl/if_diff.sh "/bin/ln -f"' BOOST_CHRONO_LIBS='' BOOST_CHRONO_STATIC_LIBS='' BOOST_FILESYSTEM_LIBS='' BOOST_FILESYSTEM_STATIC_LIBS='' BOOST_INCLUDE=' -Wno-unused-local-typedefs' BOOST_IOSTREAMS_LIBS='' BOOST_IOSTREAMS_STATIC_LIBS='' BOOST_LIBPATH='' BOOST_PROGRAM_OPTIONS_LIBS='' BOOST_PROGRAM_OPTIONS_STATIC_LIBS='' BOOST_REGEX_LIBS='' BOOST_REGEX_STATIC_LIBS='' BOOST_SERIALIZATION_LIBS='' BOOST_SERIALIZATION_STATIC_LIBS='' BOOST_SYSTEM_LIBS='' BOOST_SYSTEM_STATIC_LIBS='' BOOST_TAG='-gcc90-mt-1_67-64' BOOST_TEST_PEM_LIBS='-lboost_prg_exec_monitor-gcc90-mt-1_67-64' BOOST_TEST_PEM_STATIC_LIBS='-lboost_prg_exec_monitor-gcc90-mt-1_67-64' BOOST_TEST_TEM_LIBS='-lboost_test_exec_monitor-gcc90-mt-1_67-64' BOOST_TEST_TEM_STATIC_LIBS='-lboost_test_exec_monitor-gcc90-mt-1_67-64' BOOST_TEST_UTF_LIBS='-lboost_unit_test_framework-gcc90-mt-1_67-64' BOOST_TEST_UTF_STATIC_LIBS='-lboost_unit_test_framework-gcc90-mt-1_67-64' BOOST_THREAD_LIBS='' BOOST_THREAD_STATIC_LIBS='' BUILD_EXEEXT='' BUILD_OBJEXT='' BZ2_INCLUDE='-I$(includedir)/util/compress/bzip2 -I$(includedir0)/util/compress/bzip2' BZ2_LIB='bz2' BZ2_LIBS='' CASSANDRA_INCLUDE='' CASSANDRA_LIBS='' CASSANDRA_STATIC_LIBS='' CC='/usr/bin/gcc -std=gnu11 -fgnu89-inline' CC='/usr/bin/gcc -std=gnu11 -fgnu89-inline' CCACHE='' CC_FILTER='' CC_FOR_BUILD='gcc' CC_WRAPPER='' CD_REPORTER='' CEREAL_INCLUDE='' CFLAGS=' -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC ' CFLAGS=' -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC ' CFLAGS_DLL='' CFLAGS_FOR_BUILD='-g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE' CHECK_ARG='' CHECK_OS_NAME='' CHECK_TIMEOUT_MULT='1' CHECK_TOOLS='' COLOR_DIAGNOSTICS='-fdiagnostics-color=always' COMPILER='gcc' CONNEXT='' CPP='gcc -E' CPP='gcc -E' CPPFLAGS='-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS='-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS='-DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE' CPPFLAGS_FOR_BUILD='' CPP_FOR_BUILD='gcc -E' CRYPT_LIBS='' CURL_INCLUDE='' CURL_LIBS='' CXX='/usr/bin/g++ -std=gnu++14' CXXCPP='/usr/bin/g++ -std=gnu++14 -E' CXXFLAGS=' -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC ' CXXFLAGS_DLL='' CXX_FILTER='' CXX_WRAPPER='' C_LIBS='-lm -lpthread' C_LINK='$(CC)' DBAPI_CTLIB='' DBAPI_DRIVER='' DBAPI_FTDS100='' DBAPI_FTDS95='' DBAPI_FTDS='' DBAPI_MYSQL='' DBAPI_ODBC='' DEBUG_SFX='Release' DEFS='-DHAVE_CONFIG_H' DEMANGLE_LIBS='' DEPFLAGS='-M' DEPFLAGS_POST='' DISTCC='' DLL='-dll' DLL_LDFLAGS=' -fPIC' DLL_LIB_SETTING='$(DLL_LIB)' DL_LIBS='-ldl' DPKG_ARCHITECTURE='/usr/bin/dpkg-architecture' D_SFX='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='/bin/grep -E' EGREP_Q='/bin/grep -E -q' EXEEXT='' EXPAT_INCLUDE='' EXPAT_LIBS='' EXPAT_STATIC_LIBS='' FASTCGI_INCLUDE='' FASTCGI_LIBS='' FASTCGI_OBJS='' FAST_CFLAGS=' -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC ' FAST_CXXFLAGS=' -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC ' FAST_LDFLAGS=' -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O' FEATURES='PSGLoader GCC MT LFS DLL unix WinMain Linux Iconv Z LocalZ BZ2 LocalBZ2 PCRE LocalPCRE MBEDTLS Boost.Spirit Boost.Test.Included LMDB LocalLMDB cgi serial -ChaosMonkey -Int8GI -StrictGI -KCC -ICC -VisualAge -CompaqCompiler -Cray -WorkShop -MIPSpro -MSVC -DLL_BUILD -MaxDebug -MSWin -AIX -BSD -Cygwin -CygwinMT -Darwin -XCODE -IRIX -OSF -Solaris -MacOS -in-house-resources -JDK -Ncbi-JNI -PubSeqOS -check -Valgrind -LimitedLinker -UUID -FUSE -LIBUNWIND -LIBDW -BACKWARD_CPP -LZO -GMP -GCRYPT -NETTLE -GNUTLS -OPENSSL -KRB5 -CURL -Sybase -DBLib -FreeTDS -MySQL -BerkeleyDB -BerkeleyDB++ -ODBC -PYTHON -PYTHON25 -PYTHON26 -PYTHON27 -PYTHON3 -PERL -Boost.Chrono -Boost.Filesystem -Boost.Iostreams -Boost.Program-Options -Boost.Regex -Boost.Serialization -Boost.System -Boost.Test -Boost.Thread -C-Toolkit -OpenGL -MESA -GLUT -GLEW -wxWidgets -wx2.8 -Fast-CGI -LocalSSS -LocalMSGMAIL2 -SSSUTILS -LocalNCBILS -NCBILS2 -SSSDB -SP -ORBacus -ICU -EXPAT -SABLOT -LIBXML -LIBXSLT -LIBEXSLT -Xerces -Xalan -Zorba -SQLITE3 -SQLITE3ASYNC -VDB -OECHEM -SGE -MUPARSER -HDF5 -JPEG -PNG -TIFF -GIF -UNGIF -XPM -GL2PS -FreeType -FTGL -MAGIC -MIMETIC -GSOAP -AVRO -Cereal -SASL2 -MONGODB -MONGODB3 -LEVELDB -GMOCK -LAPACK -LIBUV -LIBSSH2 -CASSANDRA -NGHTTP2 -H2O -INFLUXDB -LIBXLSXWRITER -PROTOBUF -GRPC -MSGSL -AWS_SDK -local_lbsm -connext -ncbi_crypt -objects -bdb -dbapi -app -ctools -gui -algo 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HDF5_LIBS='' ICONV_LIBS='' ICU_CONFIG='/icu-config' ICU_INCLUDE='' ICU_LIBS='' ICU_STATIC_LIBS='' IF_DEACTIVATING='' IF_REBUILDING_CONDITIONALLY='#' IF_REBUILDING_LIBS='#' IF_WITH_DLL='# ' INFLUXDB_INCLUDE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' JDK_INCLUDE='' JDK_PATH='' JPEG_INCLUDE='' JPEG_LIBS='' KRB5_CONFIG='' KRB5_INCLUDE='' KRB5_LIBS='' KSTAT_LIBS='' KeepStateTarget='' LAPACK_INCLUDE='' LAPACK_LIBS='' LDD='/usr/bin/ldd' LDD_R='/usr/bin/ldd -r' LDFLAGS=' -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O' LDFLAGS=' -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O' LDFLAGS_FOR_BUILD='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed' LEVELDB_INCLUDE='' LEVELDB_LIBS='' LIBDW_INCLUDE='' LIBDW_LIBS='' LIBEXSLT_INCLUDE='' LIBEXSLT_LIBS='' LIBEXSLT_STATIC_LIBS='' LIBGCRYPT_CONFIG='no' LIBGNUTLS_CONFIG='no' LIBIMR='' LIBOB='' LIBOBJS='' LIBS=' -ldl -lm -lpthread' LIBSSH2_INCLUDE='' LIBSSH2_LIBS='' LIBSSH2_STATIC_LIBS='' LIBSSSDB='' LIBSSSUTILS='' LIBUNWIND_INCLUDE='' LIBUNWIND_LIBS='' LIBUV_INCLUDE='' LIBUV_LIBS='' LIBUV_STATIC_LIBS='' LIBXLSXWRITER_INCLUDE='' LIBXLSXWRITER_LIBS='' LIBXLSXWRITER_STATIC_LIBS='' LIBXML_INCLUDE='' LIBXML_LIBS='' LIBXML_STATIC_LIBS='' LIBXSLT_INCLUDE='' LIBXSLT_LIBS='' LIBXSLT_STATIC_LIBS='' LIB_OR_DLL='lib' LINK='$(CXX)' LINK_DLL='$(CXX) -shared -o' LINK_FILTER='' LINK_LOADABLE='' LINK_WRAPPER='' LMDB_INCLUDE='-I$(includedir)/util/lmdb -I$(includedir0)/util/lmdb' LMDB_LIB='lmdb' LMDB_LIBS='-lpthread' LMDB_STATIC_LIBS='-lpthread' LN_S='/bin/ln -s' LTLIBOBJS='' LZO_INCLUDE='' LZO_LIBS='' MAGIC_INCLUDE='' MAGIC_LIBS='' MAKE='/usr/bin/make' MATH_LIBS='-lm' MBEDTLS_INCLUDE='' MBEDTLS_LIBS='' MIMETIC_INCLUDE='' MIMETIC_LIBS='' MONGODB3_INCLUDE='' MONGODB3_LIBS='' MONGODB3_STATIC_LIBS='' MONGODB_INCLUDE='' MONGODB_LIBS='' MONGODB_STATIC_LIBS='' MSGSL_INCLUDE='' MT_SFX='MT' MUPARSER_INCLUDE='' MUPARSER_LIBS='' MYSQL_INCLUDE='' MYSQL_LIBS='' NCBIATOMIC_LIB='' NCBI_C_INCLUDE='' NCBI_C_LIBPATH='' NCBI_C_ncbi='' NCBI_PLATFORM_BITS='64' NCBI_SC_VERSION='0' NCBI_SSS_INCLUDE='' NCBI_SSS_LIBPATH='' NCBI_SUBVERSION_REVISION='0' NCBI_TEAMCITY_BUILDCONF_NAME='' NCBI_TEAMCITY_BUILD_ID='' NCBI_TEAMCITY_BUILD_NUMBER='0' NCBI_TEAMCITY_PROJECT_NAME='' NETTLE_INCLUDE='' NETTLE_LIBS='' NETWORK_LIBS=' -lnsl' NETWORK_PURE_LIBS=' -lnsl' NGHTTP2_INCLUDE='' NGHTTP2_LIBS='' NGHTTP2_STATIC_LIBS='' NO_AS_NEEDED='-Wl,--no-as-needed' NO_STRICT_ALIASING='-fno-strict-aliasing' NO_WHOLE_ARCHIVE='-Wl,--no-whole-archive' OBJCXX_CXXFLAGS='' OBJCXX_LIBS='' OBJEXT='o' ODBC_INCLUDE='-I$(includedir)/dbapi/driver/odbc/unix_odbc -I$(includedir0)/dbapi/driver/odbc/unix_odbc' ODBC_LIBS='' OECHEM_INCLUDE='' OECHEM_LIBS='' OPENGL_INCLUDE='' OPENGL_LIBS='' OPENGL_STATIC_LIBS='' OPENMP_FLAGS='' OPENSSL_INCLUDE='' OPENSSL_LIBS='' OPENSSL_STATIC_LIBS='' OPT_GROUPS='' ORBACUS_INCLUDE='' ORBACUS_LIBPATH='' OSMESA_INCLUDE='' OSMESA_LIBS='' OSMESA_STATIC_LIBS='' OSTYPE='linux' PACKAGE_BUGREPORT='cpp-core@ncbi.nlm.nih.gov' PACKAGE_NAME='ncbi-tools++' PACKAGE_STRING='ncbi-tools++ 0.0' PACKAGE_TARNAME='ncbi-tools--' PACKAGE_VERSION='0.0' PATH_SEPARATOR=':' PCREPOSIX_LIBS='' PCRE_INCLUDE='-I$(includedir)/util/regexp -I$(includedir0)/util/regexp' PCRE_LIB='regexp' PCRE_LIBS='' PERL='/usr/bin/perl' PERL_INCLUDE='' PERL_LIBS='' PNG_INCLUDE='' PNG_LIBS='' PROJECTS='' PROTOBUF_BIN='' PROTOBUF_INCLUDE='' PROTOBUF_LIBS='' PROTOC='' PYTHON25='' PYTHON25_INCLUDE='' PYTHON25_LIBS='' PYTHON26='' PYTHON26_INCLUDE='' PYTHON26_LIBS='' PYTHON27='' PYTHON27_INCLUDE='' PYTHON27_LIBS='' PYTHON3='' PYTHON3_INCLUDE='' PYTHON3_LIBS='' PYTHON='' PYTHON_INCLUDE='' PYTHON_LIBS='' RANLIB='ranlib' RESOLVER_LIBS='-lresolv' RPCSVC_LIBS='' RT_LIBS='' RUNPATH_ORIGIN='-Wl,-rpath,'\''$$ORIGIN'\''' Rules='rules' SABLOT_INCLUDE='' SABLOT_LIBS='' SABLOT_STATIC_LIBS='' SASL2_INCLUDE='' SASL2_LIBS='' SED='/bin/sed' SGE_INCLUDE='' SGE_LIBS='' SHELL='/bin/bash' SP_INCLUDE='' SP_LIBS='' SQLITE3_INCLUDE='' SQLITE3_LIBS='' SQLITE3_STATIC_LIBS='' SQLITE3_WRAPPER='' SSE4_1_FLAG='-msse4.1' STATIC='-static' STRIP='strip' SYBASE_DBLIBS='' SYBASE_DLLS='' SYBASE_INCLUDE='' SYBASE_LCL_PATH='' SYBASE_LIBS='' SYBASE_PATH='No_Sybase' TAIL='/usr/bin/tail' TAIL_N='/usr/bin/tail -n ' TCHECK_CL='' THREAD_LIBS='-lpthread' TIFF_INCLUDE='' TIFF_LIBS='' TOUCH='/bin/touch' UNGIF_INCLUDE='' UNGIF_LIBS='' UNIX_SRC='$(UNIX_SRC)' UNIX_USR_PROJ='$(UNIX_USR_PROJ)' UNLESS_PUBSEQOS='' UNLESS_WITH_DLL='' UNSAFE_MATH_FLAG='-funsafe-math-optimizations' USUAL_AND_DLL='both' USUAL_AND_LIB='lib' UUIDGEN='' UUID_LIBS='' VALGRIND_PATH='' VDB_INCLUDE='' VDB_LIBS='' VDB_POST_LINK=':' VDB_REQ='VDB' VDB_STATIC_LIBS='' WHOLE_ARCHIVE='-Wl,--whole-archive' WXWIDGETS_GL_LIBS='' WXWIDGETS_GL_STATIC_LIBS='' WXWIDGETS_INCLUDE='' WXWIDGETS_LIBS='' WXWIDGETS_POST_LINK=':' WXWIDGETS_STATIC_LIBS='' XALAN_INCLUDE='' XALAN_LIBS='' XALAN_STATIC_LIBS='' XCONNEXT='' XERCES_INCLUDE='' XERCES_LIBS='' XERCES_STATIC_LIBS='' XMKMF='' XPM_INCLUDE='' XPM_LIBS='' XSLTPROC=':' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS=' ' X_PRE_LIBS='' ZORBA_INCLUDE='' ZORBA_LIBS='' ZORBA_STATIC_LIBS='' Z_INCLUDE='-I$(includedir)/util/compress/zlib -I$(includedir0)/util/compress/zlib' Z_LIB='z' Z_LIBS='' _ACJNI_JAVAC='' ac_ct_CC='gcc' ac_ct_CC_FOR_BUILD='gcc' ac_ct_CXX='g++' algo='' app='' bamread='' bdb='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_root='/<>/c++/BUILD.native' build_vendor='pc' builddir='/<>/c++/BUILD.native/build' c_ncbi_runpath='/<>/c++/BUILD.native/lib' check='' compiler='GCC' compiler_root='/usr' compiler_version='900' configurables_mfname='configurables.null' datadir='${datarootdir}' datarootdir='${prefix}/share' dbapi='' dll_ext='.so' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exe_ext='' exec_prefix='${prefix}' f_compile='-c ' f_libpath='-L' f_outexe='-o ' f_outlib='' f_outobj='-o ' f_runpath='-Wl,-rpath,' freetds='' freetype_config='' gui='' has_dll_loadable='@# ' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' ifGNUmake='' includedir='${prefix}/include' infodir='${datarootdir}/info' internal='' lib_ext='.a' lib_l_ext='' lib_l_pre='-l' lib_pre='lib' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' loadable_ext='.so' local_lbsm='ncbi_lbsmd_stub' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' make_shell='SHELL=/bin/bash' mandir='${datarootdir}/man' mysql_config='' ncbi_crypt='ncbi_crypt_stub' ncbi_id2proc_snp='' ncbi_id2proc_wgs='' ncbi_java='' ncbi_runpath='/<>/c++/BUILD.native/lib' ncbi_xloader_bam='' ncbi_xloader_csra='' ncbi_xloader_snp='' ncbi_xloader_sra='' ncbi_xloader_vdbgraph='' ncbi_xloader_wgs='' ncbi_xreader_pubseqos2='' ncbi_xreader_pubseqos='' ncbicntr='' obj_ext='.o' objects='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='/usr/local' program_transform_name='s,x,x,' psdir='${docdir}' runpath='-Wl,-rpath,$(libdir)' sbindir='${exec_prefix}/sbin' script_shell='#! /bin/bash' serial='serial' serial_ws50_rtti_kludge='' sharedstatedir='${prefix}/com' signature='GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131' sraread='' srcdir='/<>/c++' sssutils='' status_dir='/<>/c++/BUILD.native/status' sysconfdir='${prefix}/etc' target_alias='' top_srcdir='' wxconf='' ## ----------- ## ## confdefs.h. ## ## ----------- ## #define HAVE_PSG_LOADER 1 #define NCBI_CXX_TOOLKIT 1 #define HAVE_COMMON_NCBI_BUILD_VER_H 1 #define HOST "x86_64-pc-linux-gnu" #define HOST_CPU "x86_64" #define HOST_VENDOR "pc" #define HOST_OS "linux-gnu" #define NCBI_COMPILER "GCC" #define NCBI_COMPILER_GCC 1 #define NCBI_COMPILER_VERSION 900 #define _GNU_SOURCE 1 #define STDC_HEADERS 1 #define HAVE_SYS_TYPES_H 1 #define HAVE_SYS_STAT_H 1 #define HAVE_STDLIB_H 1 #define HAVE_STRING_H 1 #define HAVE_MEMORY_H 1 #define HAVE_STRINGS_H 1 #define HAVE_INTTYPES_H 1 #define HAVE_STDINT_H 1 #define HAVE_UNISTD_H 1 #define SIZEOF_SIZE_T 8 #define NCBI_PLATFORM_BITS 64 #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" #define NCBI_DLL_SUPPORT 1 #define HAVE_IOSTREAM 1 #define HAVE_FSTREAM 1 #define HAVE_STRSTREAM 1 #define HAVE_INTTYPES_H 1 #define HAVE_LIMITS 1 #define HAVE_LIMITS_H 1 #define HAVE_UNISTD_H 1 #define NCBI_OS_UNIX 1 #define NCBI_OS "UNIX" #define NCBI_OS_LINUX 1 #define HAVE_WSTRING 1 #define HAVE_SOCKLEN_T 1 #define HAVE_CPUID_H 1 #define HAVE_DLFCN_H 1 #define HAVE_POLL_H 1 #define HAVE_SYS_EPOLL_H 1 #define HAVE_SYS_MOUNT_H 1 #define HAVE_SYS_STATVFS_H 1 #define HAVE_SYS_SYSINFO_H 1 #define HAVE_SYS_VFS_H 1 #define HAVE_X86INTRIN_H 1 #define HAVE_ALLOCA_H 1 #define HAVE_ARPA_INET_H 1 #define HAVE_DIRENT_H 1 #define HAVE_ERRNO_H 1 #define HAVE_FCNTL_H 1 #define HAVE_GETOPT_H 1 #define HAVE_LANGINFO_H 1 #define HAVE_LIBGEN_H 1 #define HAVE_LOCALE_H 1 #define HAVE_MALLOC_H 1 #define HAVE_NETDB_H 1 #define HAVE_NETINET_IN_H 1 #define HAVE_NETINET_TCP_H 1 #define HAVE_PATHS_H 1 #define HAVE_SIGNAL_H 1 #define HAVE_STDBOOL_H 1 #define HAVE_STDDEF_H 1 #define HAVE_SYS_EVENTFD_H 1 #define HAVE_SYS_FILE_H 1 #define HAVE_SYS_IOCTL_H 1 #define HAVE_SYS_PARAM_H 1 #define HAVE_SYS_RESOURCE_H 1 #define HAVE_SYS_SELECT_H 1 #define HAVE_SYS_SOCKET_H 1 #define HAVE_SYS_TIME_H 1 #define HAVE_SYS_WAIT_H 1 #define HAVE_WCHAR_H 1 #define TIME_WITH_SYS_TIME 1 #define HAVE_CXXABI_H 1 #define HAVE_CXA_DEMANGLE 1 #define HAVE_GETHOSTBYNAME_R 6 #define HAVE_GETHOSTBYADDR_R 8 #define HAVE_GETSERVBYNAME_R 6 #define NCBI_HAVE_GETPWUID_R 5 #define HAVE_GETLOGIN_R 1 #define HAVE_LOCALTIME_R 1 #define HAVE_PTHREAD_SETCONCURRENCY 1 #define HAVE_PTHREAD_ATFORK 1 #define HAVE_FUNC_LOCALTIME_R_TM 1 #define HAVE_PTHREAD_MUTEX 1 #define HAVE_VPRINTF 1 #define HAVE_ALARM 1 #define HAVE_ASPRINTF 1 #define HAVE_ATOLL 1 #define HAVE_BASENAME 1 #define HAVE_DAEMON 1 #define HAVE_EUIDACCESS 1 #define HAVE_EVENTFD 1 #define HAVE_FSEEKO 1 #define HAVE_FSTAT 1 #define HAVE_GETGROUPLIST 1 #define HAVE_GETOPT 1 #define HAVE_GETPAGESIZE 1 #define HAVE_GETPASS 1 #define HAVE_GETPWUID 1 #define HAVE_GETRUSAGE 1 #define HAVE_GETTIMEOFDAY 1 #define HAVE_GETUID 1 #define HAVE_LCHOWN 1 #define HAVE_LUTIMES 1 #define HAVE_MEMRCHR 1 #define HAVE_NL_LANGINFO 1 #define HAVE_POLL 1 #define HAVE_PUTENV 1 #define HAVE_READV 1 #define HAVE_SELECT 1 #define HAVE_SETENV 1 #define HAVE_SETITIMER 1 #define HAVE_SETRLIMIT 1 #define HAVE_SNPRINTF 1 #define HAVE_STATFS 1 #define HAVE_STATVFS 1 #define HAVE_STRCASECMP 1 #define HAVE_STRDUP 1 #define HAVE_STRNDUP 1 #define HAVE_STRNLEN 1 #define HAVE_STRSEP 1 #define HAVE_STRTOK_R 1 #define HAVE_TIMEGM 1 #define HAVE_USLEEP 1 #define HAVE_UTIMES 1 #define HAVE_VASPRINTF 1 #define HAVE_VSNPRINTF 1 #define HAVE_WRITEV 1 #define RETSIGTYPE void #define SELECT_UPDATES_TIMEOUT 1 #define HAVE_STRCASECMP_LC 1 #define HAVE_SYSINFO_1 1 #define HAVE_GETLOADAVG 1 #define NCBI_HAVE_READDIR_R 3 #define NCBI_HAVE_STDIO_LOCKED 1 #define SIZEOF_CHAR 1 #define SIZEOF_DOUBLE 8 #define SIZEOF_FLOAT 4 #define SIZEOF_INT 4 #define SIZEOF_LONG 4 #define SIZEOF_LONG_DOUBLE 16 #define SIZEOF_LONG_LONG 8 #define SIZEOF_SHORT 2 #define SIZEOF_VOIDP 8 #define SIZEOF_WCHAR_T 4 #define SIZEOF___INT64 0 #define HAVE_INTPTR_T 1 #define HAVE_UINTPTR_T 1 #define HAVE_STRUCT_TM_TM_ZONE 1 #define NCBI_USE_THROW_SPEC 1 #define HAVE_IOS_REGISTER_CALLBACK 1 #define HAVE_SYSV_SEMAPHORES 1 #define STACK_GROWS_UP 1 #define HAVE_CPP_STD_VARARGS 1 #define HAVE_CPP_GNU_VARARGS 1 #define NCBI_DEPRECATED __attribute__((__deprecated__)) #define NCBI_FORCEINLINE inline __attribute__((always_inline)) #define HAVE_ATTRIBUTE_DESTRUCTOR 1 #define NCBI_RESTRICT_C __restrict__ #define HAVE_RESTRICT_C 1 #define NCBI_RESTRICT_CXX __restrict__ #define HAVE_RESTRICT_CXX 1 #define NCBI_NORETURN __attribute__((__noreturn__)) #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) #define NCBI_TLS_VAR __thread #define NCBI_PACKED __attribute__((__packed__)) #define HAVE_UNALIGNED_READS 1 #define HAVE_VECTOR_MATH 1 #define HAVE_BUILTIN_BSWAP 1 #define HAVE_BUILTIN_EXPECT 1 #define HAVE_GETADDRINFO 1 #define HAVE_GETNAMEINFO 1 #define HAVE_GETHOSTENT_R 1 #define HAVE_INET_NTOP 1 #define HAVE_SOCKETPAIR 1 #define HAVE_ERF 1 #define HAVE_LIBDL 1 #define HAVE_LIBRT 1 #define HAVE_CLOCK_GETTIME 1 #define HAVE_NANOSLEEP 1 #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 #define HAVE_SCHED_YIELD 1 #define HAVE_DECL_CLOCK_MONOTONIC 1 #define HAVE_DECL_CLOCK_SGI_CYCLE 0 #define HAVE_DECL_CLOCK_REALTIME 1 #define HAVE_LIBICONV 1 #define ICONV_CONST #define USE_LOCAL_BZLIB 1 #define USE_LOCAL_PCRE 1 #define HAVE_SQLLEN 1 #define HAVE_SQLSETPOSIROW 1 #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 #define NCBI_EXPECTED_BOOST_VERSION 106700 #define HAVE_BOOST_SPIRIT 1 #define HAVE_BOOST_TEST 1 #define X_DISPLAY_MISSING 1 #define USE_LOCAL_LMDB 1 configure: exit 1 ==> BUILD.native/status/config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ncbi-tools++ configure 0.0, which was generated by GNU Autoconf 2.60. Invocation command line was $ /<>/c++/src/build-system/configure --srcdir=/<>/c++ --without-debug --with-strip --with-openmp --with-mt --without-vdb --without-gnutls --without-gcrypt --with-build-root=./ReleaseMT --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-downloaded-vdb --without-sse42 CFLAGS_FOR_BUILD=-g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE LDFLAGS_FOR_BUILD=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed --without-objects --without-algo --without-app --with-build-root=BUILD.native ## --------- ## ## Platform. ## ## --------- ## hostname = gcc131.bak.milne.osuosl.org uname -m = x86_64 uname -r = 4.19.0-6-amd64 uname -s = Linux uname -v = #1 SMP Debian 4.19.67-2+deb10u2 (2019-11-11) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = unknown /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:3010: loading site script /etc/dpkg-cross/cross-config.mipsel | # read in package-specific and global values. | . `dirname $ac_site_file`/cross-config.cache | # | # (32 bit) MIPS little endian specific configure variables | # | ac_cv_c_bigendian=no | ac_cv_c_char_unsigned=no | ac_cv_sizeof_long=4 | ac_cv_sizeof_int=4 | ac_cv_sizeof_char_p=4 | ac_cv_sizeof_long_long=8 | ac_cv_sizeof_unsigned_long=4 | ac_cv_sizeof_unsigned_int=4 | | path=`dirname $ac_site_file` | # now allow package-specific architecture-independent values to be set | if [ -d $path/cross-config.d/mipsel/ ]; then | for file in `ls $path/cross-config.d/mipsel/`; do | if [ "$file" = "$PACKAGE" -o "$file" = "$PACKAGE_NAME" ]; then | [ -d $path/cross-config.d/mipsel/$file ] || . $path/cross-config.d/mipsel/$file | HAVE_PKG_CACHE=1 | fi | done | fi | | if [ -z "$HAVE_PKG_CACHE" ]; then | # orbit2 - only needed until liborbit-dev provides these directly | # using the mechanism above. | if [ "$PACKAGE" = "orbit2" -o "$PACKAGE_NAME" = "ORBit2" ]; then | ac_cv_alignof_CORBA_octet=1 | ac_cv_alignof_CORBA_boolean=1 | ac_cv_alignof_CORBA_char=1 | ac_cv_alignof_CORBA_wchar=2 | ac_cv_alignof_CORBA_short=2 | ac_cv_alignof_CORBA_long=4 | ac_cv_alignof_CORBA_long_long=8 | ac_cv_alignof_CORBA_float=4 | ac_cv_alignof_CORBA_double=8 | ac_cv_alignof_CORBA_long_double=8 | ac_cv_alignof_CORBA_struct=1 | ac_cv_alignof_CORBA_pointer=4 | fi | fi configure:3029: creating cache config.cache configure:4780: WARNING: --with(out)-objects is deprecated configure:4782: WARNING: please simply pass an appropriate project list configure:4786: WARNING: --with(out)-dbapi is deprecated configure:4788: WARNING: please simply pass an appropriate project list configure:4792: WARNING: --with(out)-algo is deprecated configure:4794: WARNING: please simply pass an appropriate project list configure:4919: checking TeamCity build number configure:4930: result: none configure:4935: checking Subversion revision configure:4946: result: unknown configure:4951: checking NCBI stable components' version configure:4963: result: unknown configure:5012: checking build system type configure:5030: result: x86_64-pc-linux-gnu configure:5052: checking host system type configure:5067: result: x86_64-pc-linux-gnu configure:5125: checking for a BSD-compatible install configure:5181: result: /usr/bin/install -c configure:5360: checking for gcc configure:5376: found /usr/bin/gcc configure:5387: result: gcc configure:5625: checking for C compiler version configure:5632: gcc --version >&5 gcc (Debian 9.3.0-11) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:5635: $? = 0 configure:5642: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 9.3.0-11' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-mutex Thread model: posix gcc version 9.3.0 (Debian 9.3.0-11) configure:5645: $? = 0 configure:5652: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:5655: $? = 1 configure:5678: checking for C compiler default output file name configure:5705: gcc -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.c >&5 configure:5708: $? = 0 configure:5754: result: a.out configure:5759: checking whether the C compiler works configure:5769: ./a.out configure:5772: $? = 0 configure:5789: result: yes configure:5796: checking whether we are cross compiling configure:5798: result: no configure:5801: checking for suffix of executables configure:5808: gcc -o conftest -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.c >&5 configure:5811: $? = 0 configure:5835: result: configure:5841: checking for suffix of object files configure:5867: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5870: $? = 0 configure:5893: result: o configure:5897: checking whether we are using the GNU C compiler configure:5926: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:5932: $? = 0 configure:5939: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:5942: $? = 0 configure:5949: test -s conftest.o configure:5952: $? = 0 configure:5966: result: yes configure:5971: checking whether gcc accepts -g configure:6001: gcc -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6007: $? = 0 configure:6014: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:6017: $? = 0 configure:6024: test -s conftest.o configure:6027: $? = 0 configure:6157: result: yes configure:6174: checking for gcc option to accept ISO C89 configure:6248: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c >&5 configure:6254: $? = 0 configure:6261: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:6264: $? = 0 configure:6271: test -s conftest.o configure:6274: $? = 0 configure:6294: result: none needed configure:6317: checking how to run the C preprocessor configure:6357: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:6363: $? = 0 configure:6401: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6407: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:6447: result: gcc -E configure:6476: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c configure:6482: $? = 0 configure:6520: gcc -E -Wdate-time -D_FORTIFY_SOURCE=2 conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:6526: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:6627: checking for gcc configure:6643: found /usr/bin/gcc configure:6654: result: gcc configure:6892: checking for C compiler version configure:6899: gcc --version >&5 gcc (Debian 9.3.0-11) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:6902: $? = 0 configure:6909: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 9.3.0-11' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-mutex Thread model: posix gcc version 9.3.0 (Debian 9.3.0-11) configure:6912: $? = 0 configure:6919: gcc -V >&5 gcc: error: unrecognized command line option '-V' gcc: fatal error: no input files compilation terminated. configure:6922: $? = 1 configure:6925: checking whether we are using the GNU C compiler configure:6994: result: yes configure:6999: checking whether gcc accepts -g configure:7029: gcc -c -g conftest.c >&5 configure:7035: $? = 0 configure:7042: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:7045: $? = 0 configure:7052: test -s conftest.o configure:7055: $? = 0 configure:7185: result: yes configure:7202: checking for gcc option to accept ISO C89 configure:7276: gcc -c -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIE conftest.c >&5 configure:7282: $? = 0 configure:7289: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:7292: $? = 0 configure:7299: test -s conftest.o configure:7302: $? = 0 configure:7322: result: none needed configure:7345: checking how to run the C preprocessor configure:7385: gcc -E conftest.c configure:7391: $? = 0 configure:7429: gcc -E conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7435: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:7475: result: gcc -E configure:7504: gcc -E conftest.c configure:7510: $? = 0 configure:7548: gcc -E conftest.c conftest.c:10:10: fatal error: ac_nonexistent.h: No such file or directory 10 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:7554: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | #include configure:7666: checking for g++ configure:7682: found /usr/bin/g++ configure:7693: result: g++ configure:7724: checking for C++ compiler version configure:7731: g++ --version >&5 g++ (Debian 9.3.0-11) 9.3.0 Copyright (C) 2019 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7734: $? = 0 configure:7741: g++ -v >&5 Using built-in specs. COLLECT_GCC=g++ COLLECT_LTO_WRAPPER=/usr/lib/gcc/x86_64-linux-gnu/9/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:hsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 9.3.0-11' --with-bugurl=file:///usr/share/doc/gcc-9/README.Bugs --enable-languages=c,ada,c++,go,brig,d,fortran,objc,obj-c++,gm2 --prefix=/usr --with-gcc-major-version-only --program-suffix=-9 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/lib --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none,hsa --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-mutex Thread model: posix gcc version 9.3.0 (Debian 9.3.0-11) configure:7744: $? = 0 configure:7751: g++ -V >&5 g++: error: unrecognized command line option '-V' g++: fatal error: no input files compilation terminated. configure:7754: $? = 1 configure:7757: checking whether we are using the GNU C++ compiler configure:7786: g++ -c -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:7792: $? = 0 configure:7799: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:7802: $? = 0 configure:7809: test -s conftest.o configure:7812: $? = 0 configure:7826: result: yes configure:7831: checking whether g++ accepts -g configure:7861: g++ -c -g -Wdate-time -D_FORTIFY_SOURCE=2 conftest.cpp >&5 configure:7867: $? = 0 configure:7874: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:7877: $? = 0 configure:7884: test -s conftest.o configure:7887: $? = 0 configure:8017: result: yes configure:9037: checking whether /usr/bin/gcc has an option to export all symbols configure:9068: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--export-all-symbols -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 /usr/bin/ld: unrecognized option '--export-all-symbols' /usr/bin/ld: use the --help option for usage information collect2: error: ld returned 1 exit status configure:9074: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:9068: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9074: $? = 0 configure:9081: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9084: $? = 0 configure:9091: test -s conftest configure:9094: $? = 0 configure:9110: result: -Wl,-export-dynamic configure:9114: checking whether /usr/bin/gcc supports -Wl,--{en,dis}able-new-dtags configure:9142: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9148: $? = 0 configure:9155: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9158: $? = 0 configure:9165: test -s conftest configure:9168: $? = 0 configure:9182: result: yes configure:9194: checking whether /usr/bin/gcc has an option to discard unneeded shared libraries configure:9224: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9230: $? = 0 configure:9237: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9240: $? = 0 configure:9247: test -s conftest configure:9250: $? = 0 configure:9266: result: -Wl,--as-needed configure:9279: checking whether /usr/bin/gcc has an option to link in whole static archives configure:9309: /usr/bin/g++ -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,--whole-archive -Wl,--no-whole-archive conftest.cpp -lm -lpthread >&5 configure:9315: $? = 0 configure:9322: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9325: $? = 0 configure:9332: test -s conftest configure:9335: $? = 0 configure:9351: result: -Wl,--whole-archive configure:9449: checking whether _LIBCPP_VERSION is declared configure:9480: /usr/bin/g++ -c -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:20:22: error: '_LIBCPP_VERSION' was not declared in this scope 20 | char *p = (char *) _LIBCPP_VERSION; | ^~~~~~~~~~~~~~~ configure:9486: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include | | int | main () | { | #ifndef _LIBCPP_VERSION | char *p = (char *) _LIBCPP_VERSION; | return !p; | #endif | | ; | return 0; | } configure:9518: result: no configure:9522: checking how to enable C++ '14 features in /usr/bin/g++ configure:9552: /usr/bin/g++ -std=gnu++14 -o conftest -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:9558: $? = 0 configure:9565: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:9568: $? = 0 configure:9575: test -s conftest configure:9578: $? = 0 configure:9594: result: -std=gnu++14 configure:9611: checking how to enable C '11 or at least '99 features in /usr/bin/gcc configure:9644: /usr/bin/gcc -xc99=all -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.c -lm -lpthread >&5 gcc: error: language c99=all not recognized gcc: error: language c99=all not recognized configure:9650: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:9644: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -pthread -fopenmp -g -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.c -lm -lpthread >&5 configure:9650: $? = 0 configure:9657: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:9660: $? = 0 configure:9667: test -s conftest configure:9670: $? = 0 configure:9686: result: -std=gnu11 -fgnu89-inline configure:10022: checking for dpkg-architecture configure:10040: found /usr/bin/dpkg-architecture configure:10052: result: /usr/bin/dpkg-architecture configure:10320: checking for gawk configure:10350: result: no configure:10320: checking for mawk configure:10336: found /usr/bin/mawk configure:10347: result: mawk configure:10358: checking for GNU make configure:10374: result: /usr/bin/make configure:10392: checking for /usr/bin/make configure:10422: result: /usr/bin/make configure:10479: checking whether ln -s works configure:10483: result: yes configure:10538: checking for ranlib configure:10554: found /usr/bin/ranlib configure:10565: result: ranlib configure:10593: checking for ar configure:10609: found /usr/bin/ar configure:10621: result: ar cr configure:10630: checking ranlib's effectiveness /usr/bin/g++ -std=gnu++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -c conftest.cpp ar cr conftest.a conftest.o configure:10670: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp conftest.a -lm -lpthread >&5 configure:10676: $? = 0 configure:10683: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:10686: $? = 0 configure:10693: test -s conftest configure:10696: $? = 0 ranlib conftest.a configure:10731: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp conftest.a -lm -lpthread >&5 configure:10737: $? = 0 configure:10744: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:10747: $? = 0 configure:10754: test -s conftest configure:10757: $? = 0 configure:10778: result: neutral configure:10791: checking for strip configure:10807: found /usr/bin/strip configure:10819: result: strip configure:10827: checking whether strip loses runtime type information /usr/bin/g++ -std=gnu++14 -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -o conftest conftest.cpp configure:10869: result: no configure:11046: checking for ccache configure:11079: result: no configure:11104: checking for tail configure:11122: found /usr/bin/tail configure:11134: result: /usr/bin/tail configure:11142: checking whether /usr/bin/tail accepts modern syntax (-n N) configure:11146: result: yes configure:11156: checking for basename configure:11174: found /usr/bin/basename configure:11186: result: /usr/bin/basename configure:11196: checking for sed configure:11214: found /bin/sed configure:11226: result: /bin/sed configure:11236: checking for touch configure:11255: found /bin/touch configure:11267: result: /bin/touch configure:11275: checking for grep that handles long lines and -e configure:11349: result: /bin/grep configure:11354: checking for egrep configure:11432: result: /bin/grep -E configure:11437: checking how to run /bin/grep -E quietly configure:11446: result: /bin/grep -E -q configure:11451: checking for valgrind configure:11481: result: no configure:11489: checking for ldd configure:11508: found /usr/bin/ldd configure:11520: result: /usr/bin/ldd configure:11529: checking whether /usr/bin/ldd accepts -r configure:11532: result: yes configure:11543: checking for uuidgen configure:11576: result: no configure:11583: checking for cd_reporter configure:11617: result: no configure:11730: checking how to run the C++ preprocessor configure:11766: /usr/bin/g++ -std=gnu++14 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:11772: $? = 0 configure:11810: /usr/bin/g++ -std=gnu++14 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:14:10: fatal error: ac_nonexistent.h: No such file or directory 14 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11816: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include configure:11856: result: /usr/bin/g++ -std=gnu++14 -E configure:11885: /usr/bin/g++ -std=gnu++14 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:11891: $? = 0 configure:11929: /usr/bin/g++ -std=gnu++14 -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:14:10: fatal error: ac_nonexistent.h: No such file or directory 14 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:11935: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | /* end confdefs.h. */ | #include configure:11980: checking for ANSI C header files configure:12010: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12016: $? = 0 configure:12023: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12026: $? = 0 configure:12033: test -s conftest.o configure:12036: $? = 0 configure:12132: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:12135: $? = 0 configure:12141: ./conftest configure:12144: $? = 0 configure:12161: result: yes configure:12185: checking for sys/types.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for sys/stat.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for stdlib.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for string.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for memory.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for strings.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for inttypes.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for stdint.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12185: checking for unistd.h configure:12206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12212: $? = 0 configure:12219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12222: $? = 0 configure:12229: test -s conftest.o configure:12232: $? = 0 configure:12245: result: yes configure:12257: checking for size_t configure:12287: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:12293: $? = 0 configure:12300: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:12303: $? = 0 configure:12310: test -s conftest.o configure:12313: $? = 0 configure:12325: result: yes configure:12337: checking for size_t configure:12405: result: yes configure:12408: checking size of size_t configure:12796: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:12799: $? = 0 configure:12805: ./conftest configure:12808: $? = 0 configure:12830: result: 8 configure:12962: checking for amq configure:12996: result: no configure:13201: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -Wl,--no-allow-shlib-undefined configure:13229: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -g -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -fPIC -shared -Wl,--no-allow-shlib-undefined -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed conftest.cpp -lm -lpthread >&5 configure:13235: $? = 0 configure:13242: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:13245: $? = 0 configure:13252: test -s conftest configure:13255: $? = 0 configure:13269: result: yes configure:13363: checking how to run the C preprocessor configure:13493: result: gcc -E configure:13522: gcc -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c configure:13528: $? = 0 configure:13566: gcc -E -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:28:10: fatal error: ac_nonexistent.h: No such file or directory 28 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:13572: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | /* end confdefs.h. */ | #include configure:13845: checking whether cross-directory hard links work configure:13859: result: yes configure:14000: checking iostream usability configure:14017: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14023: $? = 0 configure:14030: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14033: $? = 0 configure:14040: test -s conftest.o configure:14043: $? = 0 configure:14054: result: yes configure:14058: checking iostream presence configure:14073: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14079: $? = 0 configure:14100: result: yes configure:14133: checking for iostream configure:14141: result: yes configure:14000: checking iostream.h usability configure:14017: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:62:10: fatal error: iostream.h: No such file or directory 62 | #include | ^~~~~~~~~~~~ compilation terminated. configure:14023: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14054: result: no configure:14058: checking iostream.h presence configure:14073: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:29:10: fatal error: iostream.h: No such file or directory 29 | #include | ^~~~~~~~~~~~ compilation terminated. configure:14079: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | /* end confdefs.h. */ | #include configure:14100: result: no configure:14133: checking for iostream.h configure:14141: result: no configure:14170: checking fstream usability configure:14187: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14193: $? = 0 configure:14200: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14203: $? = 0 configure:14210: test -s conftest.o configure:14213: $? = 0 configure:14224: result: yes configure:14228: checking fstream presence configure:14243: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14249: $? = 0 configure:14270: result: yes configure:14303: checking for fstream configure:14311: result: yes configure:14170: checking fstream.h usability configure:14187: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:63:10: fatal error: fstream.h: No such file or directory 63 | #include | ^~~~~~~~~~~ compilation terminated. configure:14193: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14224: result: no configure:14228: checking fstream.h presence configure:14243: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:30:10: fatal error: fstream.h: No such file or directory 30 | #include | ^~~~~~~~~~~ compilation terminated. configure:14249: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | /* end confdefs.h. */ | #include configure:14270: result: no configure:14303: checking for fstream.h configure:14311: result: no configure:14341: checking strstream usability configure:14358: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 In file included from /usr/include/c++/9/backward/strstream:50, from conftest.cpp:63: /usr/include/c++/9/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ configure:14364: $? = 0 configure:14371: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14374: $? = 0 configure:14381: test -s conftest.o configure:14384: $? = 0 configure:14395: result: yes configure:14399: checking strstream presence configure:14414: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp In file included from /usr/include/c++/9/backward/strstream:50, from conftest.cpp:30: /usr/include/c++/9/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] 32 | #warning \ | ^~~~~~~ configure:14420: $? = 0 configure:14441: result: yes configure:14474: checking for strstream configure:14482: result: yes configure:14341: checking strstream.h usability configure:14358: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:64:10: fatal error: strstream.h: No such file or directory 64 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:14364: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14395: result: no configure:14399: checking strstream.h presence configure:14414: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:31:10: fatal error: strstream.h: No such file or directory 31 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:14420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include configure:14441: result: no configure:14474: checking for strstream.h configure:14482: result: no configure:14341: checking strstrea.h usability configure:14358: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:64:10: fatal error: strstrea.h: No such file or directory 64 | #include | ^~~~~~~~~~~~ compilation terminated. configure:14364: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14395: result: no configure:14399: checking strstrea.h presence configure:14414: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:31:10: fatal error: strstrea.h: No such file or directory 31 | #include | ^~~~~~~~~~~~ compilation terminated. configure:14420: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | /* end confdefs.h. */ | #include configure:14441: result: no configure:14474: checking for strstrea.h configure:14482: result: no configure:14503: checking for inttypes.h configure:14509: result: yes configure:14513: checking limits usability configure:14530: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14536: $? = 0 configure:14543: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14546: $? = 0 configure:14553: test -s conftest.o configure:14556: $? = 0 configure:14567: result: yes configure:14571: checking limits presence configure:14586: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14592: $? = 0 configure:14613: result: yes configure:14646: checking for limits configure:14654: result: yes configure:14513: checking limits.h usability configure:14530: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:14536: $? = 0 configure:14543: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:14546: $? = 0 configure:14553: test -s conftest.o configure:14556: $? = 0 configure:14567: result: yes configure:14571: checking limits.h presence configure:14586: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:14592: $? = 0 configure:14613: result: yes configure:14646: checking for limits.h configure:14654: result: yes configure:14674: checking for unistd.h configure:14680: result: yes configure:14853: checking windows.h usability configure:14870: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:68:10: fatal error: windows.h: No such file or directory 68 | #include | ^~~~~~~~~~~ compilation terminated. configure:14876: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:14907: result: no configure:14911: checking windows.h presence configure:14926: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:35:10: fatal error: windows.h: No such file or directory 35 | #include | ^~~~~~~~~~~ compilation terminated. configure:14932: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | /* end confdefs.h. */ | #include configure:14953: result: no configure:14986: checking for windows.h configure:14994: result: no configure:15126: checking for wstring configure:15153: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:15159: $? = 0 configure:15166: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15169: $? = 0 configure:15176: test -s conftest configure:15179: $? = 0 configure:15192: result: yes configure:15202: checking for socklen_t configure:15234: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15240: $? = 0 configure:15247: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15250: $? = 0 configure:15257: test -s conftest.o configure:15260: $? = 0 configure:15272: result: yes configure:15311: checking atomic.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:73:10: fatal error: atomic.h: No such file or directory 73 | #include | ^~~~~~~~~~ compilation terminated. configure:15334: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15365: result: no configure:15369: checking atomic.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:40:10: fatal error: atomic.h: No such file or directory 40 | #include | ^~~~~~~~~~ compilation terminated. configure:15390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | /* end confdefs.h. */ | #include configure:15411: result: no configure:15444: checking for atomic.h configure:15452: result: no configure:15311: checking cpuid.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking cpuid.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for cpuid.h configure:15452: result: yes configure:15311: checking dlfcn.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking dlfcn.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for dlfcn.h configure:15452: result: yes configure:15311: checking ieeefp.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:75:10: fatal error: ieeefp.h: No such file or directory 75 | #include | ^~~~~~~~~~ compilation terminated. configure:15334: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15365: result: no configure:15369: checking ieeefp.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:42:10: fatal error: ieeefp.h: No such file or directory 42 | #include | ^~~~~~~~~~ compilation terminated. configure:15390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | /* end confdefs.h. */ | #include configure:15411: result: no configure:15444: checking for ieeefp.h configure:15452: result: no configure:15311: checking poll.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking poll.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for poll.h configure:15452: result: yes configure:15311: checking sys/epoll.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking sys/epoll.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for sys/epoll.h configure:15452: result: yes configure:15311: checking sys/mount.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking sys/mount.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for sys/mount.h configure:15452: result: yes configure:15311: checking sys/sockio.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:78:10: fatal error: sys/sockio.h: No such file or directory 78 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:15334: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15365: result: no configure:15369: checking sys/sockio.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:45:10: fatal error: sys/sockio.h: No such file or directory 45 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:15390: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | /* end confdefs.h. */ | #include configure:15411: result: no configure:15444: checking for sys/sockio.h configure:15452: result: no configure:15311: checking sys/statvfs.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking sys/statvfs.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for sys/statvfs.h configure:15452: result: yes configure:15311: checking sys/sysinfo.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking sys/sysinfo.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for sys/sysinfo.h configure:15452: result: yes configure:15311: checking sys/vfs.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking sys/vfs.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for sys/vfs.h configure:15452: result: yes configure:15311: checking x86intrin.h usability configure:15328: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15334: $? = 0 configure:15341: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15344: $? = 0 configure:15351: test -s conftest.o configure:15354: $? = 0 configure:15365: result: yes configure:15369: checking x86intrin.h presence configure:15384: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15390: $? = 0 configure:15411: result: yes configure:15444: checking for x86intrin.h configure:15452: result: yes configure:15686: checking alloca.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking alloca.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for alloca.h configure:15827: result: yes configure:15686: checking arpa/inet.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking arpa/inet.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for arpa/inet.h configure:15827: result: yes configure:15686: checking dirent.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking dirent.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for dirent.h configure:15827: result: yes configure:15686: checking errno.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking errno.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for errno.h configure:15827: result: yes configure:15686: checking fcntl.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking fcntl.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for fcntl.h configure:15827: result: yes configure:15686: checking getopt.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking getopt.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for getopt.h configure:15827: result: yes configure:15686: checking langinfo.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking langinfo.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for langinfo.h configure:15827: result: yes configure:15686: checking libgen.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking libgen.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for libgen.h configure:15827: result: yes configure:15686: checking locale.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking locale.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for locale.h configure:15827: result: yes configure:15686: checking malloc.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking malloc.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for malloc.h configure:15827: result: yes configure:15686: checking net/inet/in.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:92:10: fatal error: net/inet/in.h: No such file or directory 92 | #include | ^~~~~~~~~~~~~~~ compilation terminated. configure:15709: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15740: result: no configure:15744: checking net/inet/in.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:59:10: fatal error: net/inet/in.h: No such file or directory 59 | #include | ^~~~~~~~~~~~~~~ compilation terminated. configure:15765: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | /* end confdefs.h. */ | #include configure:15786: result: no configure:15819: checking for net/inet/in.h configure:15827: result: no configure:15686: checking netdb.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking netdb.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for netdb.h configure:15827: result: yes configure:15686: checking netinet/in.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking netinet/in.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for netinet/in.h configure:15827: result: yes configure:15686: checking netinet/tcp.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking netinet/tcp.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for netinet/tcp.h configure:15827: result: yes configure:15686: checking paths.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking paths.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for paths.h configure:15827: result: yes configure:15686: checking select.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:96:10: fatal error: select.h: No such file or directory 96 | #include | ^~~~~~~~~~ compilation terminated. configure:15709: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15740: result: no configure:15744: checking select.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:63:10: fatal error: select.h: No such file or directory 63 | #include | ^~~~~~~~~~ compilation terminated. configure:15765: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | /* end confdefs.h. */ | #include configure:15786: result: no configure:15819: checking for select.h configure:15827: result: no configure:15686: checking signal.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking signal.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for signal.h configure:15827: result: yes configure:15686: checking stdbool.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking stdbool.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for stdbool.h configure:15827: result: yes configure:15686: checking stddef.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking stddef.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for stddef.h configure:15827: result: yes configure:15686: checking sys/eventfd.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/eventfd.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/eventfd.h configure:15827: result: yes configure:15686: checking sys/file.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/file.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/file.h configure:15827: result: yes configure:15686: checking sys/ioctl.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/ioctl.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/ioctl.h configure:15827: result: yes configure:15686: checking sys/param.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/param.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/param.h configure:15827: result: yes configure:15686: checking sys/resource.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/resource.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/resource.h configure:15827: result: yes configure:15686: checking sys/select.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/select.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/select.h configure:15827: result: yes configure:15686: checking sys/socket.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/socket.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/socket.h configure:15827: result: yes configure:15686: checking sys/time.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/time.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/time.h configure:15827: result: yes configure:15686: checking sys/wait.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking sys/wait.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for sys/wait.h configure:15827: result: yes configure:15686: checking valgrind/memcheck.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:108:10: fatal error: valgrind/memcheck.h: No such file or directory 108 | #include | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15709: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:15740: result: no configure:15744: checking valgrind/memcheck.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:75:10: fatal error: valgrind/memcheck.h: No such file or directory 75 | #include | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:15765: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | /* end confdefs.h. */ | #include configure:15786: result: no configure:15819: checking for valgrind/memcheck.h configure:15827: result: no configure:15686: checking wchar.h usability configure:15703: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15709: $? = 0 configure:15716: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15719: $? = 0 configure:15726: test -s conftest.o configure:15729: $? = 0 configure:15740: result: yes configure:15744: checking wchar.h presence configure:15759: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:15765: $? = 0 configure:15786: result: yes configure:15819: checking for wchar.h configure:15827: result: yes configure:15840: checking whether time.h and sys/time.h may both be included configure:15870: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15876: $? = 0 configure:15883: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15886: $? = 0 configure:15893: test -s conftest.o configure:15896: $? = 0 configure:15908: result: yes configure:15934: checking cxxabi.h usability configure:15951: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:15957: $? = 0 configure:15964: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:15967: $? = 0 configure:15974: test -s conftest.o configure:15977: $? = 0 configure:15988: result: yes configure:15992: checking cxxabi.h presence configure:16007: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp configure:16013: $? = 0 configure:16034: result: yes configure:16067: checking for cxxabi.h configure:16075: result: yes configure:16089: checking whether abi::__cxa_demangle is declared configure:16120: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:83:12: warning: extra tokens at end of #ifndef directive 83 | #ifndef abi::__cxa_demangle | ^~ configure:16126: $? = 0 configure:16133: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16136: $? = 0 configure:16143: test -s conftest.o configure:16146: $? = 0 configure:16158: result: yes configure:16172: checking for gethostbyname_r configure:16205: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:88:57: error: cannot convert 'int*' to 'hostent**' 88 | hp = gethostbyname_r("", hp, buf, sizeof(buf), &err); | ^~~~ | | | int* In file included from conftest.cpp:79: /usr/include/netdb.h:180:36: note: initializing argument 5 of 'int gethostbyname_r(const char*, hostent*, char*, size_t, hostent**, int*)' 180 | struct hostent **__restrict __result, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ conftest.cpp:84:26: warning: unused variable 'dummy' [-Wunused-variable] 84 | void* dummy = (void*) &gethostbyname_r; | ^~~~~ configure:16211: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | /* end confdefs.h. */ | #include | int | main () | { | | void* dummy = (void*) &gethostbyname_r; | char buf[1024]; | int err; | struct hostent* hp = 0; | hp = gethostbyname_r("", hp, buf, sizeof(buf), &err); | | ; | return 0; | } configure:16273: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:84:26: warning: unused variable 'dummy' [-Wunused-variable] 84 | void* dummy = (void*) &gethostbyname_r; | ^~~~~ configure:16279: $? = 0 configure:16286: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16289: $? = 0 configure:16296: test -s conftest.o configure:16299: $? = 0 configure:16315: result: 6 configure:16329: checking for gethostbyaddr_r configure:16368: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:95:53: error: cannot convert 'int*' to 'hostent**' 95 | hp, buf, sizeof(buf), &err); | ^~~~ | | | int* In file included from conftest.cpp:81: /usr/include/netdb.h:174:36: note: initializing argument 7 of 'int gethostbyaddr_r(const void*, __socklen_t, int, hostent*, char*, size_t, hostent**, int*)' 174 | struct hostent **__restrict __result, | ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~ conftest.cpp:89:16: warning: unused variable 'dummy' [-Wunused-variable] 89 | void* dummy = (void*) &gethostbyaddr_r; | ^~~~~ configure:16374: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | /* end confdefs.h. */ | | #include | #include | #include | | int | main () | { | | void* dummy = (void*) &gethostbyaddr_r; | char buf[1024]; | int err; | unsigned int host; | struct hostent* hp = 0; | hp = gethostbyaddr_r((char *) &host, sizeof(host), AF_INET, | hp, buf, sizeof(buf), &err); | | ; | return 0; | } configure:16442: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:89:16: warning: unused variable 'dummy' [-Wunused-variable] 89 | void* dummy = (void*) &gethostbyaddr_r; | ^~~~~ conftest.cpp:94:14: warning: unused variable 'res' [-Wunused-variable] 94 | int res = gethostbyaddr_r((char *) &host, sizeof(host), AF_INET, | ^~~ configure:16448: $? = 0 configure:16455: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16458: $? = 0 configure:16465: test -s conftest.o configure:16468: $? = 0 configure:16484: result: 8 configure:16498: checking for getservbyname_r configure:16531: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:90:59: error: too few arguments to function 'int getservbyname_r(const char*, const char*, servent*, char*, size_t, servent**)' 90 | sp = getservbyname_r("", "", sp, buf, sizeof(buf)); | ^ In file included from conftest.cpp:81: /usr/include/netdb.h:310:12: note: declared here 310 | extern int getservbyname_r (const char *__restrict __name, | ^~~~~~~~~~~~~~~ conftest.cpp:86:26: warning: unused variable 'dummy' [-Wunused-variable] 86 | void* dummy = (void*) &getservbyname_r; | ^~~~~ conftest.cpp:88:26: warning: unused variable 'err' [-Wunused-variable] 88 | int err; | ^~~ configure:16537: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | /* end confdefs.h. */ | #include | int | main () | { | | void* dummy = (void*) &getservbyname_r; | char buf[1024]; | int err; | struct servent* sp = 0; | sp = getservbyname_r("", "", sp, buf, sizeof(buf)); | | ; | return 0; | } configure:16599: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:86:26: warning: unused variable 'dummy' [-Wunused-variable] 86 | void* dummy = (void*) &getservbyname_r; | ^~~~~ conftest.cpp:88:26: warning: variable 'err' set but not used [-Wunused-but-set-variable] 88 | int err; | ^~~ configure:16605: $? = 0 configure:16612: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16615: $? = 0 configure:16622: test -s conftest.o configure:16625: $? = 0 configure:16641: result: 6 configure:16655: checking for getpwuid_r configure:16686: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:89:65: error: too few arguments to function 'int getpwuid_r(__uid_t, passwd*, char*, size_t, passwd**)' 89 | char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; | ^ In file included from conftest.cpp:83: /usr/include/pwd.h:145:12: note: declared here 145 | extern int getpwuid_r (__uid_t __uid, | ^~~~~~~~~~ conftest.cpp:89:16: warning: unused variable 'dir' [-Wunused-variable] 89 | char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; | ^~~ configure:16692: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | /* end confdefs.h. */ | #include | #include | int | main () | { | struct passwd bpw; | char buf[1024]; | char *dir = getpwuid_r(getuid(), &bpw, buf, sizeof(buf))->pw_dir; | | ; | return 0; | } configure:16749: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:16755: $? = 0 configure:16762: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16765: $? = 0 configure:16772: test -s conftest.o configure:16775: $? = 0 configure:16788: result: 5 configure:16801: checking for getlogin_r configure:16828: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:16834: $? = 0 configure:16841: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:16844: $? = 0 configure:16851: test -s conftest.o configure:16854: $? = 0 configure:16866: result: yes configure:16889: checking for localtime_r configure:16945: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:16951: $? = 0 configure:16958: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16961: $? = 0 configure:16968: test -s conftest configure:16971: $? = 0 configure:16985: result: yes configure:16889: checking for pthread_setconcurrency configure:16945: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:16951: $? = 0 configure:16958: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16961: $? = 0 configure:16968: test -s conftest configure:16971: $? = 0 configure:16985: result: yes configure:16889: checking for pthread_atfork configure:16945: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:16951: $? = 0 configure:16958: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:16961: $? = 0 configure:16968: test -s conftest configure:16971: $? = 0 configure:16985: result: yes configure:16996: checking return type of localtime_r configure:17025: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c: In function 'main': conftest.c:94:20: warning: unused variable 'y' [-Wunused-variable] 94 | int y = localtime_r(&t, &mytm)->tm_year; | ^ configure:17031: $? = 0 configure:17038: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17041: $? = 0 configure:17048: test -s conftest.o configure:17051: $? = 0 configure:17063: result: struct configure:17080: checking whether pthread mutexes are available configure:17107: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17113: $? = 0 configure:17120: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17123: $? = 0 configure:17130: test -s conftest configure:17133: $? = 0 configure:17146: result: yes configure:17163: checking for vprintf configure:17219: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:112:6: warning: conflicting types for built-in function 'vprintf'; expected 'int(const char *, __va_list_tag *)' [-Wbuiltin-declaration-mismatch] 112 | char vprintf (); | ^~~~~~~ conftest.c:100:1: note: 'vprintf' is declared in header '' 99 | # include 100 | #else configure:17225: $? = 0 configure:17232: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17235: $? = 0 configure:17242: test -s conftest configure:17245: $? = 0 configure:17259: result: yes configure:17266: checking for _doprnt configure:17322: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccoFvdtH.o: in function `main': conftest.c:(.text+0xa): undefined reference to `_doprnt' collect2: error: ld returned 1 exit status configure:17328: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | /* end confdefs.h. */ | /* Define _doprnt to an innocuous variant, in case declares _doprnt. | For example, HP-UX 11i declares gettimeofday. */ | #define _doprnt innocuous__doprnt | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char _doprnt (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef _doprnt | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char _doprnt (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub__doprnt || defined __stub____doprnt | choke me | #endif | | int | main () | { | return _doprnt (); | ; | return 0; | } configure:17361: result: no configure:17436: checking for alarm configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for asprintf configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for atoll configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for basename configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for dbopen configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccPxZffg.o: in function `main': conftest.c:(.text+0xa): undefined reference to `dbopen' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | /* end confdefs.h. */ | /* Define dbopen to an innocuous variant, in case declares dbopen. | For example, HP-UX 11i declares gettimeofday. */ | #define dbopen innocuous_dbopen | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char dbopen (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef dbopen | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dbopen (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_dbopen || defined __stub___dbopen | choke me | #endif | | int | main () | { | return dbopen (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for daemon configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for euidaccess configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for eventfd configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for fseeko configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for fstat configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getgrouplist configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for gethrtime configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccPVCIVW.o: in function `main': conftest.c:(.text+0xa): undefined reference to `gethrtime' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | /* end confdefs.h. */ | /* Define gethrtime to an innocuous variant, in case declares gethrtime. | For example, HP-UX 11i declares gettimeofday. */ | #define gethrtime innocuous_gethrtime | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char gethrtime (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef gethrtime | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char gethrtime (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_gethrtime || defined __stub___gethrtime | choke me | #endif | | int | main () | { | return gethrtime (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for getopt configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getpagesize configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getpass configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getpassphrase configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccDzaYyS.o: in function `main': conftest.c:(.text+0xa): undefined reference to `getpassphrase' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | /* end confdefs.h. */ | /* Define getpassphrase to an innocuous variant, in case declares getpassphrase. | For example, HP-UX 11i declares gettimeofday. */ | #define getpassphrase innocuous_getpassphrase | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getpassphrase (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getpassphrase | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getpassphrase (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getpassphrase || defined __stub___getpassphrase | choke me | #endif | | int | main () | { | return getpassphrase (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for getpwuid configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getrusage configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for gettimeofday configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for getuid configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for lchown configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for lutimes configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for malloc_options configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccSXV4BA.o: in function `main': conftest.c:(.text+0xa): undefined reference to `malloc_options' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | /* end confdefs.h. */ | /* Define malloc_options to an innocuous variant, in case declares malloc_options. | For example, HP-UX 11i declares gettimeofday. */ | #define malloc_options innocuous_malloc_options | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char malloc_options (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef malloc_options | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char malloc_options (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_malloc_options || defined __stub___malloc_options | choke me | #endif | | int | main () | { | return malloc_options (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for memrchr configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for nl_langinfo configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for poll configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for putenv configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for readpassphrase configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccjWvX1k.o: in function `main': conftest.c:(.text+0xa): undefined reference to `readpassphrase' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | /* end confdefs.h. */ | /* Define readpassphrase to an innocuous variant, in case declares readpassphrase. | For example, HP-UX 11i declares gettimeofday. */ | #define readpassphrase innocuous_readpassphrase | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char readpassphrase (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef readpassphrase | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char readpassphrase (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_readpassphrase || defined __stub___readpassphrase | choke me | #endif | | int | main () | { | return readpassphrase (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for readv configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for select configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for setenv configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for setitimer configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for setrlimit configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for snprintf configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:141:6: warning: conflicting types for built-in function 'snprintf'; expected 'int(char *, long unsigned int, const char *, ...)' [-Wbuiltin-declaration-mismatch] 141 | char snprintf (); | ^~~~~~~~ conftest.c:129:1: note: 'snprintf' is declared in header '' 128 | # include 129 | #else configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for statfs configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for statvfs configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strcasecmp configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:144:6: warning: conflicting types for built-in function 'strcasecmp'; expected 'int(const char *, const char *)' [-Wbuiltin-declaration-mismatch] 144 | char strcasecmp (); | ^~~~~~~~~~ configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strdup configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:145:6: warning: conflicting types for built-in function 'strdup'; expected 'char *(const char *)' [-Wbuiltin-declaration-mismatch] 145 | char strdup (); | ^~~~~~ configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strlcat configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccNL431g.o: in function `main': conftest.c:(.text+0xa): undefined reference to `strlcat' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | /* end confdefs.h. */ | /* Define strlcat to an innocuous variant, in case declares strlcat. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcat innocuous_strlcat | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcat (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcat | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcat (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcat || defined __stub___strlcat | choke me | #endif | | int | main () | { | return strlcat (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for strlcpy configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccJ6heqY.o: in function `main': conftest.c:(.text+0xa): undefined reference to `strlcpy' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | /* end confdefs.h. */ | /* Define strlcpy to an innocuous variant, in case declares strlcpy. | For example, HP-UX 11i declares gettimeofday. */ | #define strlcpy innocuous_strlcpy | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char strlcpy (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef strlcpy | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char strlcpy (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_strlcpy || defined __stub___strlcpy | choke me | #endif | | int | main () | { | return strlcpy (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for strndup configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:146:6: warning: conflicting types for built-in function 'strndup'; expected 'char *(const char *, long unsigned int)' [-Wbuiltin-declaration-mismatch] 146 | char strndup (); | ^~~~~~~ configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strnlen configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:147:6: warning: conflicting types for built-in function 'strnlen'; expected 'long unsigned int(const char *, long unsigned int)' [-Wbuiltin-declaration-mismatch] 147 | char strnlen (); | ^~~~~~~ configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strsep configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for strtok_r configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for sysmp configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccz8r4nJ.o: in function `main': conftest.c:(.text+0xa): undefined reference to `sysmp' collect2: error: ld returned 1 exit status configure:17498: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | /* end confdefs.h. */ | /* Define sysmp to an innocuous variant, in case declares sysmp. | For example, HP-UX 11i declares gettimeofday. */ | #define sysmp innocuous_sysmp | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char sysmp (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef sysmp | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char sysmp (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_sysmp || defined __stub___sysmp | choke me | #endif | | int | main () | { | return sysmp (); | ; | return 0; | } configure:17532: result: no configure:17436: checking for timegm configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for usleep configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for utimes configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for vasprintf configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for vsnprintf configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c:154:6: warning: conflicting types for built-in function 'vsnprintf'; expected 'int(char *, long unsigned int, const char *, __va_list_tag *)' [-Wbuiltin-declaration-mismatch] 154 | char vsnprintf (); | ^~~~~~~~~ conftest.c:142:1: note: 'vsnprintf' is declared in header '' 141 | # include 142 | #else configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17436: checking for writev configure:17492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 configure:17498: $? = 0 configure:17505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:17508: $? = 0 configure:17515: test -s conftest configure:17518: $? = 0 configure:17532: result: yes configure:17549: checking return type of signal handlers configure:17577: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:139:25: error: void value not ignored as it ought to be 139 | return *(signal (0, 0)) (0) == 1; | ~~~~~~~~~~~~~~~~^~~ configure:17583: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | return *(signal (0, 0)) (0) == 1; | ; | return 0; | } configure:17615: result: void configure:17624: checking whether select updates the timeout when interrupted configure:17671: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:17674: $? = 0 configure:17680: ./conftest configure:17683: $? = 0 configure:17699: result: yes configure:17714: checking whether strcasecmp treats letters as lowercase configure:17743: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:17746: $? = 0 configure:17752: ./conftest configure:17755: $? = 0 configure:17771: result: yes configure:17782: checking for Linux-like sysinfo with 1 arg configure:17812: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:141:16: warning: unused variable 'dummy' [-Wunused-variable] 141 | void* dummy = (void*) &sysinfo; | ^~~~~ conftest.cpp:143:14: warning: unused variable 'retval' [-Wunused-variable] 143 | int retval = sysinfo(info); | ^~~~~~ configure:17818: $? = 0 configure:17825: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:17828: $? = 0 configure:17835: test -s conftest.o configure:17838: $? = 0 configure:17850: result: yes configure:17865: checking for getloadavg configure:17921: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:17927: $? = 0 configure:17934: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:17937: $? = 0 configure:17944: test -s conftest configure:17947: $? = 0 configure:17961: result: yes configure:17974: checking for readdir_r configure:18001: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:142:61: warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated [-Wdeprecated-declarations] 142 | DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); | ^ In file included from /usr/include/features.h:446, from /usr/include/dirent.h:25, from conftest.cpp:138: /usr/include/dirent.h:189:12: note: declared here 189 | extern int __REDIRECT (readdir_r, | ^~~~~~~~~~ conftest.cpp:142:61: warning: 'int readdir_r(DIR*, dirent*, dirent**)' is deprecated [-Wdeprecated-declarations] 142 | DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); | ^ In file included from /usr/include/features.h:446, from /usr/include/dirent.h:25, from conftest.cpp:138: /usr/include/dirent.h:189:12: note: declared here 189 | extern int __REDIRECT (readdir_r, | ^~~~~~~~~~ conftest.cpp:142:42: warning: 'entry' is used uninitialized in this function [-Wuninitialized] 142 | DIR* dir; struct dirent* entry; readdir_r(dir, entry, &entry); | ~~~~~~~~~^~~~~~~~~~~~~~~~~~~~ conftest.cpp:142:42: warning: 'dir' is used uninitialized in this function [-Wuninitialized] configure:18007: $? = 0 configure:18014: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18017: $? = 0 configure:18024: test -s conftest.o configure:18027: $? = 0 configure:18099: result: 3 configure:18110: checking whether stdio supports locking configure:18139: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:143:5: warning: variable 'c' set but not used [-Wunused-but-set-variable] 143 | int c; | ^ configure:18145: $? = 0 configure:18152: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18155: $? = 0 configure:18162: test -s conftest configure:18165: $? = 0 configure:18178: result: yes configure:18189: checking for an ANSI C-conforming const configure:18264: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:18270: $? = 0 configure:18277: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18280: $? = 0 configure:18287: test -s conftest.o configure:18290: $? = 0 configure:18302: result: yes configure:18314: checking whether byte ordering is bigendian configure:18581: result: no configure:18601: checking whether char is unsigned configure:18667: result: no configure:18676: checking for char configure:18706: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:18712: $? = 0 configure:18719: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:18722: $? = 0 configure:18729: test -s conftest.o configure:18732: $? = 0 configure:18744: result: yes configure:18747: checking size of char configure:19135: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:19138: $? = 0 configure:19144: ./conftest configure:19147: $? = 0 configure:19169: result: 1 configure:19176: checking for double configure:19206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:19212: $? = 0 configure:19219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:19222: $? = 0 configure:19229: test -s conftest.o configure:19232: $? = 0 configure:19244: result: yes configure:19247: checking size of double configure:19635: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:19638: $? = 0 configure:19644: ./conftest configure:19647: $? = 0 configure:19669: result: 8 configure:19676: checking for float configure:19706: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:19712: $? = 0 configure:19719: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:19722: $? = 0 configure:19729: test -s conftest.o configure:19732: $? = 0 configure:19744: result: yes configure:19747: checking size of float configure:20135: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:20138: $? = 0 configure:20144: ./conftest configure:20147: $? = 0 configure:20169: result: 4 configure:20176: checking for int configure:20206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:20212: $? = 0 configure:20219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:20222: $? = 0 configure:20229: test -s conftest.o configure:20232: $? = 0 configure:20244: result: yes configure:20247: checking size of int configure:20669: result: 4 configure:20676: checking for long configure:20706: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:20712: $? = 0 configure:20719: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:20722: $? = 0 configure:20729: test -s conftest.o configure:20732: $? = 0 configure:20744: result: yes configure:20747: checking size of long configure:21169: result: 4 configure:21176: checking for long double configure:21206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:21212: $? = 0 configure:21219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:21222: $? = 0 configure:21229: test -s conftest.o configure:21232: $? = 0 configure:21244: result: yes configure:21247: checking size of long double configure:21635: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:21638: $? = 0 configure:21644: ./conftest configure:21647: $? = 0 configure:21669: result: 16 configure:21676: checking for long long configure:21706: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:21712: $? = 0 configure:21719: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:21722: $? = 0 configure:21729: test -s conftest.o configure:21732: $? = 0 configure:21744: result: yes configure:21747: checking size of long long configure:22169: result: 8 configure:22176: checking for short configure:22206: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:22212: $? = 0 configure:22219: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:22222: $? = 0 configure:22229: test -s conftest.o configure:22232: $? = 0 configure:22244: result: yes configure:22247: checking size of short configure:22635: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:22638: $? = 0 configure:22644: ./conftest configure:22647: $? = 0 configure:22669: result: 2 configure:22676: checking for void* configure:22706: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:22712: $? = 0 configure:22719: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:22722: $? = 0 configure:22729: test -s conftest.o configure:22732: $? = 0 configure:22744: result: yes configure:22747: checking size of void* configure:23135: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:23138: $? = 0 configure:23144: ./conftest configure:23147: $? = 0 configure:23169: result: 8 configure:23176: checking for wchar_t configure:23207: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:23213: $? = 0 configure:23220: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:23223: $? = 0 configure:23230: test -s conftest.o configure:23233: $? = 0 configure:23245: result: yes configure:23248: checking size of wchar_t configure:23642: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:23645: $? = 0 configure:23651: ./conftest configure:23654: $? = 0 configure:23676: result: 4 configure:23683: checking for __int64 configure:23713: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:183:9: error: '__int64' does not name a type; did you mean '__int64_t'? 183 | typedef __int64 ac__type_new_; | ^~~~~~~ | __int64_t conftest.cpp: In function 'int main()': conftest.cpp:187:6: error: 'ac__type_new_' was not declared in this scope 187 | if ((ac__type_new_ *) 0) | ^~~~~~~~~~~~~ conftest.cpp:187:21: error: expected primary-expression before ')' token 187 | if ((ac__type_new_ *) 0) | ^ conftest.cpp:187:22: error: expected ')' before numeric constant 187 | if ((ac__type_new_ *) 0) | ~ ^~ | ) conftest.cpp:189:13: error: 'ac__type_new_' was not declared in this scope 189 | if (sizeof (ac__type_new_)) | ^~~~~~~~~~~~~ configure:23719: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | typedef __int64 ac__type_new_; | int | main () | { | if ((ac__type_new_ *) 0) | return 0; | if (sizeof (ac__type_new_)) | return 0; | ; | return 0; | } configure:23751: result: no configure:23754: checking size of __int64 configure:24176: result: 0 configure:24183: checking for intptr_t configure:24213: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24219: $? = 0 configure:24226: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24229: $? = 0 configure:24236: test -s conftest.o configure:24239: $? = 0 configure:24251: result: yes configure:24261: checking for uintptr_t configure:24291: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24297: $? = 0 configure:24304: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24307: $? = 0 configure:24314: test -s conftest.o configure:24317: $? = 0 configure:24329: result: yes configure:24341: checking for struct sockaddr_in.sin_len configure:24371: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:160:13: error: 'struct sockaddr_in' has no member named 'sin_len' 160 | if (ac_aggr.sin_len) | ^~~~~~~ configure:24377: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | static struct sockaddr_in ac_aggr; | if (ac_aggr.sin_len) | return 0; | ; | return 0; | } configure:24429: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:160:20: error: 'struct sockaddr_in' has no member named 'sin_len' 160 | if (sizeof ac_aggr.sin_len) | ^~~~~~~ configure:24435: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | /* end confdefs.h. */ | #include | #include | | int | main () | { | static struct sockaddr_in ac_aggr; | if (sizeof ac_aggr.sin_len) | return 0; | ; | return 0; | } configure:24470: result: no configure:24481: checking for struct tm.tm_zone configure:24510: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24516: $? = 0 configure:24523: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24526: $? = 0 configure:24533: test -s conftest.o configure:24536: $? = 0 configure:24608: result: yes configure:24618: checking for struct tm.__tm_zone configure:24647: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:160:13: error: 'struct tm' has no member named '__tm_zone'; did you mean 'tm_zone'? 160 | if (ac_aggr.__tm_zone) | ^~~~~~~~~ | tm_zone configure:24653: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | /* end confdefs.h. */ | #include | | int | main () | { | static struct tm ac_aggr; | if (ac_aggr.__tm_zone) | return 0; | ; | return 0; | } configure:24704: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:160:20: error: 'struct tm' has no member named '__tm_zone'; did you mean 'tm_zone'? 160 | if (sizeof ac_aggr.__tm_zone) | ^~~~~~~~~ | tm_zone configure:24710: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | /* end confdefs.h. */ | #include | | int | main () | { | static struct tm ac_aggr; | if (sizeof ac_aggr.__tm_zone) | return 0; | ; | return 0; | } configure:24745: result: no configure:24758: checking whether function prototypes can use throw(...) configure:24786: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24792: $? = 0 configure:24799: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24802: $? = 0 configure:24809: test -s conftest.o configure:24812: $? = 0 configure:24824: result: yes configure:24835: checking for ios(_base)::register_callback configure:24861: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:24867: $? = 0 configure:24874: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24877: $? = 0 configure:24884: test -s conftest.o configure:24887: $? = 0 configure:24899: result: yes configure:24910: checking for SysV semaphores configure:24938: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:161:15: warning: variable 'buf' set but not used [-Wunused-but-set-variable] 161 | struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT); | ^~~ conftest.cpp:161:24: warning: unused variable 'id' [-Wunused-variable] 161 | struct sembuf buf; int id = semget(0x1234, 0, IPC_CREAT); | ^~ configure:24944: $? = 0 configure:24951: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:24954: $? = 0 configure:24961: test -s conftest configure:24964: $? = 0 configure:24977: result: yes configure:24987: checking for union semun configure:25019: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:166:26: error: invalid application of 'sizeof' to incomplete type 'ac__type_new_' {aka 'semun'} 166 | if (sizeof (ac__type_new_)) | ^ configure:25025: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | /* end confdefs.h. */ | #include | #include | | typedef union semun ac__type_new_; | int | main () | { | if ((ac__type_new_ *) 0) | return 0; | if (sizeof (ac__type_new_)) | return 0; | ; | return 0; | } configure:25057: result: no configure:25069: checking which way the stack grows configure:25098: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:25101: $? = 0 configure:25107: ./conftest configure:25110: $? = 0 configure:25126: result: up configure:25148: checking whether the preprocessor supports C99-style variadic macros configure:25177: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25183: $? = 0 configure:25190: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25193: $? = 0 configure:25200: test -s conftest.o configure:25203: $? = 0 configure:25215: result: yes configure:25225: checking whether the preprocessor supports GNU-style variadic macros configure:25254: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:159:17: warning: ISO C does not permit named variadic macros [-Wvariadic-macros] 159 | #define foo(args...) 1 | ^~~ configure:25260: $? = 0 configure:25267: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25270: $? = 0 configure:25277: test -s conftest.o configure:25280: $? = 0 configure:25292: result: yes configure:25321: checking syntax for marking deprecated functions configure:25347: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:164:3: warning: 'void f()' is deprecated [-Wdeprecated-declarations] 164 | f(); | ^ conftest.cpp:160:52: note: declared here 160 | void f(void) __attribute__((__deprecated__)); void f(void) { } | ^ conftest.cpp:164:3: warning: 'void f()' is deprecated [-Wdeprecated-declarations] 164 | f(); | ^ conftest.cpp:160:52: note: declared here 160 | void f(void) __attribute__((__deprecated__)); void f(void) { } | ^ configure:25353: $? = 0 configure:25360: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25363: $? = 0 configure:25370: test -s conftest.o configure:25373: $? = 0 configure:25385: result: __attribute__((__deprecated__)) configure:25401: checking how to force inlining configure:25424: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:161:16: error: expected ';' before 'int' 161 | __always_inline int f(void) { return 0; } | ^~~~ | ; configure:25430: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | /* end confdefs.h. */ | __always_inline int f(void) { return 0; } configure:25424: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25430: $? = 0 configure:25437: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25440: $? = 0 configure:25447: test -s conftest.o configure:25450: $? = 0 configure:25463: result: inline __attribute__((always_inline)) configure:25473: checking whether the C compiler supports __attribute__((destructor)) configure:25499: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25505: $? = 0 configure:25512: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25515: $? = 0 configure:25522: test -s conftest.o configure:25525: $? = 0 configure:25537: result: yes configure:25552: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports __attribute__((visibility("default"))) configure:25616: result: unnecessary configure:25626: checking whether the C compiler supports C99 restrict configure:25648: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:25654: $? = 0 configure:25661: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:25664: $? = 0 configure:25671: test -s conftest.o configure:25674: $? = 0 configure:25687: result: __restrict__ configure:25710: checking whether the C++ compiler supports C99 restrict configure:25732: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:25738: $? = 0 configure:25745: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25748: $? = 0 configure:25755: test -s conftest.o configure:25758: $? = 0 configure:25771: result: __restrict__ configure:25788: checking syntax for marking functions that never return configure:25814: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'void f()': conftest.cpp:167:60: warning: 'noreturn' function does return 167 | void f(void) __attribute__((__noreturn__)); void f(void) { } | ^ configure:25820: $? = 0 configure:25827: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25830: $? = 0 configure:25837: test -s conftest.o configure:25840: $? = 0 configure:25852: result: __attribute__((__noreturn__)) configure:25862: checking syntax for marking functions whose result should be checked configure:25888: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:172:5: warning: unused variable 'status' [-Wunused-variable] 172 | int status = f(); | ^~~~~~ configure:25894: $? = 0 configure:25901: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25904: $? = 0 configure:25911: test -s conftest.o configure:25914: $? = 0 configure:25926: result: __attribute__((warn_unused_result)) configure:25936: checking syntax for declaring thread-local variables configure:25965: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:173:21: warning: unused variable 'j' [-Wunused-variable] 173 | static __thread int j; | ^ conftest.cpp: At global scope: conftest.cpp:173:21: warning: 'j' defined but not used [-Wunused-variable] configure:25971: $? = 0 configure:25978: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:25981: $? = 0 configure:25988: test -s conftest.o configure:25991: $? = 0 configure:26004: result: __thread configure:26015: checking syntax for marking types as packed to save memory configure:26041: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:26047: $? = 0 configure:26054: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26057: $? = 0 configure:26064: test -s conftest.o configure:26067: $? = 0 configure:26079: result: __attribute__((__packed__)) configure:26090: checking whether FIONBIO requires BSD_COMP to be defined configure:26117: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:176:6: warning: unused variable 'request' [-Wunused-variable] 176 | int request = FIONBIO; | ^~~~~~~ configure:26123: $? = 0 configure:26130: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26133: $? = 0 configure:26140: test -s conftest.o configure:26143: $? = 0 configure:26214: result: no configure:26224: checking whether INADDR_NONE is defined configure:26263: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:188:16: warning: unused variable 'addr' [-Wunused-variable] 188 | unsigned long addr = INADDR_NONE; | ^~~~ configure:26269: $? = 0 configure:26276: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26279: $? = 0 configure:26286: test -s conftest.o configure:26289: $? = 0 configure:26301: result: yes configure:26311: checking whether unaligned reads are permissible configure:26344: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:26347: $? = 0 configure:26353: ./conftest ef012345 configure:26356: $? = 0 configure:26372: result: yes configure:26390: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports SIMD vector arithmetic configure:26417: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c: In function 'main': conftest.c:177:17: warning: variable 'v3' set but not used [-Wunused-but-set-variable] 177 | TVector v1, v2, v3; v3 = f(v1, v2); | ^~ conftest.c:177:27: warning: 'v1' is used uninitialized in this function [-Wuninitialized] 177 | TVector v1, v2, v3; v3 = f(v1, v2); | ^~~~~~~~~ conftest.c:177:27: warning: 'v2' is used uninitialized in this function [-Wuninitialized] configure:26423: $? = 0 configure:26430: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26433: $? = 0 configure:26440: test -s conftest.o configure:26443: $? = 0 configure:26455: result: yes configure:26465: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -funsafe-math-optimizations configure:26492: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -funsafe-math-optimizations -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26498: $? = 0 configure:26505: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26508: $? = 0 configure:26515: test -s conftest.o configure:26518: $? = 0 configure:26530: result: yes configure:26533: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -msse4.1 configure:26561: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -msse4.1 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 conftest.c: In function 'main': conftest.c:178:12: warning: statement with no effect [-Wunused-value] 178 | __builtin_ia32_shufpd(v, v, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ conftest.c:178:12: warning: 'v' is used uninitialized in this function [-Wuninitialized] 178 | __builtin_ia32_shufpd(v, v, 1); | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ configure:26567: $? = 0 configure:26574: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26577: $? = 0 configure:26584: test -s conftest configure:26587: $? = 0 configure:26600: result: yes configure:26603: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -maes configure:26634: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -maes -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26640: $? = 0 configure:26647: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26650: $? = 0 configure:26657: test -s conftest.o configure:26660: $? = 0 configure:26672: result: yes configure:26679: checking whether /usr/bin/gcc -std=gnu11 -fgnu89-inline supports -fdiagnostics-color=always configure:26706: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -fdiagnostics-color=always -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 configure:26712: $? = 0 configure:26719: test -z "$ac_c_werror_flag" || test ! -s conftest.err configure:26722: $? = 0 configure:26729: test -s conftest.o configure:26732: $? = 0 configure:26744: result: yes configure:26778: checking whether /usr/bin/g++ -std=gnu++14 supports __builtin_bswap32 configure:26804: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:26810: $? = 0 configure:26817: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26820: $? = 0 configure:26827: test -s conftest configure:26830: $? = 0 configure:26843: result: yes configure:26853: checking whether /usr/bin/g++ -std=gnu++14 supports __builtin_expect configure:26879: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 configure:26885: $? = 0 configure:26892: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26895: $? = 0 configure:26902: test -s conftest configure:26905: $? = 0 configure:26918: result: yes configure:26932: checking whether in-house NCBI resources are available configure:26941: result: no configure:26947: checking for gethostbyname in -lnsl configure:26982: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 configure:26988: $? = 0 configure:26995: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:26998: $? = 0 configure:27005: test -s conftest configure:27008: $? = 0 configure:27022: result: yes configure:27030: checking for connect in -lsocket configure:27065: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lsocket -lm -lpthread >&5 /usr/bin/ld: cannot find -lsocket collect2: error: ld returned 1 exit status configure:27071: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char connect (); | int | main () | { | return connect (); | ; | return 0; | } configure:27105: result: no configure:27114: checking for res_search in -lresolv configure:27143: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lresolv -lnsl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:180:14: warning: unused variable 'st' [-Wunused-variable] 180 | int st = res_search("foo.bar", 1, 1, ans, sizeof(ans)); | ^~ configure:27149: $? = 0 configure:27156: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27159: $? = 0 configure:27166: test -s conftest configure:27169: $? = 0 configure:27183: result: yes configure:27197: checking for inet_ntoa_r configure:27253: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc7HdxBG.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `inet_ntoa_r' collect2: error: ld returned 1 exit status configure:27259: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | /* end confdefs.h. */ | /* Define inet_ntoa_r to an innocuous variant, in case declares inet_ntoa_r. | For example, HP-UX 11i declares gettimeofday. */ | #define inet_ntoa_r innocuous_inet_ntoa_r | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char inet_ntoa_r (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef inet_ntoa_r | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char inet_ntoa_r (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_inet_ntoa_r || defined __stub___inet_ntoa_r | choke me | #endif | | int | main () | { | return inet_ntoa_r (); | ; | return 0; | } configure:27293: result: no configure:27303: checking for getaddrinfo configure:27329: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:179:32: warning: 'p' is used uninitialized in this function [-Wuninitialized] 179 | struct addrinfo *p; getaddrinfo("foo", "bar", p, &p); | ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~ configure:27335: $? = 0 configure:27342: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27345: $? = 0 configure:27352: test -s conftest configure:27355: $? = 0 configure:27368: result: yes configure:27376: checking for getnameinfo configure:27405: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27411: $? = 0 configure:27418: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27421: $? = 0 configure:27428: test -s conftest configure:27431: $? = 0 configure:27444: result: yes configure:27462: checking for freehostent configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccjnDYOU.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `freehostent' collect2: error: ld returned 1 exit status configure:27524: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | /* end confdefs.h. */ | /* Define freehostent to an innocuous variant, in case declares freehostent. | For example, HP-UX 11i declares gettimeofday. */ | #define freehostent innocuous_freehostent | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char freehostent (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef freehostent | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char freehostent (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_freehostent || defined __stub___freehostent | choke me | #endif | | int | main () | { | return freehostent (); | ; | return 0; | } configure:27558: result: no configure:27462: checking for gethostent_r configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27524: $? = 0 configure:27531: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27534: $? = 0 configure:27541: test -s conftest configure:27544: $? = 0 configure:27558: result: yes configure:27462: checking for getipnodebyaddr configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc3rMbJ8.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `getipnodebyaddr' collect2: error: ld returned 1 exit status configure:27524: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | /* end confdefs.h. */ | /* Define getipnodebyaddr to an innocuous variant, in case declares getipnodebyaddr. | For example, HP-UX 11i declares gettimeofday. */ | #define getipnodebyaddr innocuous_getipnodebyaddr | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getipnodebyaddr (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getipnodebyaddr | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getipnodebyaddr (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getipnodebyaddr || defined __stub___getipnodebyaddr | choke me | #endif | | int | main () | { | return getipnodebyaddr (); | ; | return 0; | } configure:27558: result: no configure:27462: checking for getipnodebyname configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccmopXlT.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `getipnodebyname' collect2: error: ld returned 1 exit status configure:27524: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | /* end confdefs.h. */ | /* Define getipnodebyname to an innocuous variant, in case declares getipnodebyname. | For example, HP-UX 11i declares gettimeofday. */ | #define getipnodebyname innocuous_getipnodebyname | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char getipnodebyname (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef getipnodebyname | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char getipnodebyname (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_getipnodebyname || defined __stub___getipnodebyname | choke me | #endif | | int | main () | { | return getipnodebyname (); | ; | return 0; | } configure:27558: result: no configure:27462: checking for inet_ntop configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27524: $? = 0 configure:27531: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27534: $? = 0 configure:27541: test -s conftest configure:27544: $? = 0 configure:27558: result: yes configure:27462: checking for socketpair configure:27518: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnsl -lm -lpthread >&5 configure:27524: $? = 0 configure:27531: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27534: $? = 0 configure:27541: test -s conftest configure:27544: $? = 0 configure:27558: result: yes configure:27582: checking for erf configure:27638: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 conftest.cpp:203:6: warning: declaration of 'char erf()' conflicts with built-in declaration 'double erf(double)' [-Wbuiltin-declaration-mismatch] 203 | char erf (); | ^~~ configure:27644: $? = 0 configure:27651: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:27654: $? = 0 configure:27661: test -s conftest configure:27664: $? = 0 configure:27678: result: yes configure:27690: checking for library containing kstat_open configure:27731: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccguN0eQ.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `kstat_open' collect2: error: ld returned 1 exit status configure:27737: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27731: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccuL3PtV.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `kstat_open' collect2: error: ld returned 1 exit status configure:27737: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27731: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lkstat -lm -lpthread >&5 /usr/bin/ld: cannot find -lkstat collect2: error: ld returned 1 exit status configure:27737: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char kstat_open (); | int | main () | { | return kstat_open (); | ; | return 0; | } configure:27781: result: no configure:27797: checking for library containing rstat configure:27838: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccGzfwBl.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27844: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27838: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/cc9Ivpqr.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27844: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27838: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lrpcsvc -lm -lpthread >&5 /usr/bin/ld: /tmp/ccOMtO1r.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `rstat' collect2: error: ld returned 1 exit status configure:27844: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char rstat (); | int | main () | { | return rstat (); | ; | return 0; | } configure:27888: result: no configure:27912: checking for library containing setkey configure:27953: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccaoL9cO.o: in function `main': conftest.c:(.text+0xa): undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27959: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27953: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lm -lpthread >&5 /usr/bin/ld: /tmp/ccYyYZ9T.o: in function `main': conftest.c:(.text+0xa): undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27959: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27953: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lcrypt -lm -lpthread >&5 /usr/bin/ld: /tmp/ccCBKlVW.o: in function `main': conftest.c:(.text+0xa): undefined reference to `setkey' collect2: error: ld returned 1 exit status configure:27959: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:27953: /usr/bin/gcc -std=gnu11 -fgnu89-inline -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.c -lcrypt_i -lm -lpthread >&5 /usr/bin/ld: cannot find -lcrypt_i collect2: error: ld returned 1 exit status configure:27959: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char setkey (); | int | main () | { | return setkey (); | ; | return 0; | } configure:28003: result: no configure:28037: checking for library containing dlopen configure:28078: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccibEytQ.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `dlopen' collect2: error: ld returned 1 exit status configure:28084: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dlopen (); | int | main () | { | return dlopen (); | ; | return 0; | } configure:28078: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccig4CYR.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `dlopen' collect2: error: ld returned 1 exit status configure:28084: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char dlopen (); | int | main () | { | return dlopen (); | ; | return 0; | } configure:28078: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28084: $? = 0 configure:28091: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28094: $? = 0 configure:28101: test -s conftest configure:28104: $? = 0 configure:28128: result: -ldl configure:28148: checking for library containing uuid_generate configure:28189: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lm -lpthread >&5 /usr/bin/ld: /tmp/ccv53kQJ.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `uuid_generate' collect2: error: ld returned 1 exit status configure:28195: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:28189: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -luuid -lm -lpthread >&5 /usr/bin/ld: cannot find -luuid collect2: error: ld returned 1 exit status configure:28195: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char uuid_generate (); | int | main () | { | return uuid_generate (); | ; | return 0; | } configure:28239: result: no configure:28250: checking for library containing fuse_loop configure:28291: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/cc0akS6a.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `fuse_loop' collect2: error: ld returned 1 exit status configure:28297: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fuse_loop (); | int | main () | { | return fuse_loop (); | ; | return 0; | } configure:28291: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lfuse -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lfuse collect2: error: ld returned 1 exit status configure:28297: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char fuse_loop (); | int | main () | { | return fuse_loop (); | ; | return 0; | } configure:28341: result: no configure:28358: checking for library containing clock_gettime configure:28399: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28405: $? = 0 configure:28412: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28415: $? = 0 configure:28422: test -s conftest configure:28425: $? = 0 configure:28449: result: none required configure:28467: checking for library containing cplus_demangle configure:28508: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/cci9ncIP.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `cplus_demangle' collect2: error: ld returned 1 exit status configure:28514: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28508: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccCKDulT.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `cplus_demangle' collect2: error: ld returned 1 exit status configure:28514: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28508: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldemangle -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -ldemangle collect2: error: ld returned 1 exit status configure:28514: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char cplus_demangle (); | int | main () | { | return cplus_demangle (); | ; | return 0; | } configure:28558: result: no configure:28588: checking for clock_gettime configure:28644: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28650: $? = 0 configure:28657: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28660: $? = 0 configure:28667: test -s conftest configure:28670: $? = 0 configure:28684: result: yes configure:28588: checking for nanosleep configure:28644: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28650: $? = 0 configure:28657: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28660: $? = 0 configure:28667: test -s conftest configure:28670: $? = 0 configure:28684: result: yes configure:28588: checking for pthread_cond_timedwait_relative_np configure:28644: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 /usr/bin/ld: /tmp/ccfkXEKB.o: in function `main': conftest.cpp:(.text+0x5): undefined reference to `pthread_cond_timedwait_relative_np' collect2: error: ld returned 1 exit status configure:28650: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | /* end confdefs.h. */ | /* Define pthread_cond_timedwait_relative_np to an innocuous variant, in case declares pthread_cond_timedwait_relative_np. | For example, HP-UX 11i declares gettimeofday. */ | #define pthread_cond_timedwait_relative_np innocuous_pthread_cond_timedwait_relative_np | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char pthread_cond_timedwait_relative_np (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef pthread_cond_timedwait_relative_np | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char pthread_cond_timedwait_relative_np (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_pthread_cond_timedwait_relative_np || defined __stub___pthread_cond_timedwait_relative_np | choke me | #endif | | int | main () | { | return pthread_cond_timedwait_relative_np (); | ; | return 0; | } configure:28684: result: no configure:28588: checking for pthread_condattr_setclock configure:28644: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28650: $? = 0 configure:28657: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28660: $? = 0 configure:28667: test -s conftest configure:28670: $? = 0 configure:28684: result: yes configure:28588: checking for sched_yield configure:28644: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:28650: $? = 0 configure:28657: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28660: $? = 0 configure:28667: test -s conftest configure:28670: $? = 0 configure:28684: result: yes configure:28694: checking whether CLOCK_MONOTONIC is declared configure:28728: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:28734: $? = 0 configure:28741: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28744: $? = 0 configure:28751: test -s conftest.o configure:28754: $? = 0 configure:28766: result: yes configure:28782: checking whether CLOCK_SGI_CYCLE is declared configure:28816: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp: In function 'int main()': conftest.cpp:197:22: error: 'CLOCK_SGI_CYCLE' was not declared in this scope 197 | char *p = (char *) CLOCK_SGI_CYCLE; | ^~~~~~~~~~~~~~~ configure:28822: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_SYS_TIME_H | # include | #endif | | int | main () | { | #ifndef CLOCK_SGI_CYCLE | char *p = (char *) CLOCK_SGI_CYCLE; | return !p; | #endif | | ; | return 0; | } configure:28854: result: no configure:28870: checking whether CLOCK_REALTIME is declared configure:28904: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:28910: $? = 0 configure:28917: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:28920: $? = 0 configure:28927: test -s conftest.o configure:28930: $? = 0 configure:28942: result: yes configure:28963: checking for library containing iconv configure:28994: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:29000: $? = 0 configure:29007: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:29010: $? = 0 configure:29017: test -s conftest configure:29020: $? = 0 configure:29101: result: none required configure:29110: checking for iconv declaration configure:29137: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 configure:29143: $? = 0 configure:29150: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:29153: $? = 0 configure:29160: test -s conftest.o configure:29163: $? = 0 configure:29179: result: extern size_t iconv (iconv_t cd, char * *inbuf, size_t *inbytesleft, char * *outbuf, size_t *outbytesleft); configure:29470: checking for libdw configure:29498: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldw -ldl -lm -lpthread >&5 conftest.cpp:192:10: fatal error: elfutils/libdw.h: No such file or directory 192 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:29504: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | Dwarf* d = dwarf_begin(17, DWARF_C_READ); | ; | return 0; | } configure:29537: result: no configure:29647: checking for libbackward configure:29683: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lbackward -ldl -lm -lpthread >&5 conftest.cpp:200:30: fatal error: backward.hpp: No such file or directory 200 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:29689: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #ifdef HAVE_LIBUNWIND | # define BACKWARD_HAS_UNWIND 1 | #else | # define BACKWARD_HAS_BACKTRACE 1 | #endif | #ifdef HAVE_LIBDW | # define BACKWARD_HAS_DW 1 | #endif | #include | int | main () | { | backward::StackTrace st; st.load_here(32); | ; | return 0; | } configure:29722: result: no configure:29839: checking for libz configure:29867: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lz -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:196:32: warning: unused variable 'n' [-Wunused-variable] 196 | gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) | ^ conftest.cpp:196:42: warning: 'fp' is used uninitialized in this function [-Wuninitialized] 196 | gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) | ~~~~~~^~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: cannot find -lz collect2: error: ld returned 1 exit status configure:29873: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | gzFile fp; char buf[1024]; int n = gzread(fp, buf, sizeof(buf)) | ; | return 0; | } configure:29906: result: no configure:29934: using local zlib copy in util/compress/zlib configure:30026: checking for libbz2 configure:30055: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lbz2 -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:197:13: warning: unused variable 'n' [-Wunused-variable] 197 | int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) | ^ conftest.cpp:197:27: warning: 'fp' is used uninitialized in this function [-Wuninitialized] 197 | int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) | ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~ /usr/bin/ld: cannot find -lbz2 collect2: error: ld returned 1 exit status configure:30061: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | /* end confdefs.h. */ | #include | int | main () | { | BZFILE* fp; char buf[1024]; int err; | int n = BZ2_bzRead(&err, fp, buf, sizeof(buf)) | ; | return 0; | } configure:30094: result: no configure:30122: using local bzlib copy in util/compress/bzip2 configure:30418: checking for libpcre configure:30446: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lpcre -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:197:44: warning: unused variable 'x' [-Wunused-variable] 197 | const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); | ^ conftest.cpp:197:58: warning: 'p' is used uninitialized in this function [-Wuninitialized] 197 | const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); | ~~~~~~~~~~^~~~~~~~~ /usr/bin/ld: cannot find -lpcre collect2: error: ld returned 1 exit status configure:30452: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | /* end confdefs.h. */ | #include | int | main () | { | const char*s[]={"x"}; pcre* p; pcre_extra* x = pcre_study(p, 1, s); | ; | return 0; | } configure:30485: result: no configure:30513: using local PCRE copy in util/regexp configure:30738: using local mbedTLS copy in connect/mbedtls configure:30854: checking for libgmp configure:30882: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lgmp -ldl -lm -lpthread >&5 conftest.cpp:194:10: fatal error: gmp.h: No such file or directory 194 | #include | ^~~~~~~ compilation terminated. configure:30888: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | mpz_t x; mpz_init(x); | ; | return 0; | } configure:30921: result: no configure:30978: checking for libgcrypt-config configure:31009: result: no configure:31428: checking for libhogweed configure:31457: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lhogweed -lnettle -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lhogweed /usr/bin/ld: cannot find -lnettle collect2: error: ld returned 1 exit status configure:31463: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | struct sexp_iterator it; | sexp_iterator_first(&it, 0, (const uint8_t*) NULL); | ; | return 0; | } configure:31496: result: no configure:31556: checking for libgnutls-config configure:31586: result: no configure:32288: checking for libssl configure:32316: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lssl -lcrypto -ldl -lm -lpthread >&5 conftest.cpp:194:10: fatal error: openssl/ssl.h: No such file or directory 194 | #include | ^~~~~~~~~~~~~~~ compilation terminated. configure:32322: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | SSL_library_init(); | ; | return 0; | } configure:32355: result: no configure:32402: checking for krb5-config configure:32436: result: no configure:32534: checking for libgssapi_krb5 configure:32570: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lgssapi_krb5 -ldl -lm -lpthread >&5 conftest.cpp:199:10: fatal error: gssapi/gssapi_krb5.h: No such file or directory 199 | #include | ^~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:32576: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | #ifdef HAVE_INTTYPES_H | # include | #endif | extern "C" { | #include | } | int | main () | { | OM_uint32 min_stat; | gss_buffer_desc buf; | gss_release_buffer(&min_stat, &buf); | ; | return 0; | } configure:32609: result: no configure:33029: checking for libcurl configure:33057: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lcurl -ldl -lm -lpthread >&5 conftest.cpp:194:10: fatal error: curl/curl.h: No such file or directory 194 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:33063: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | char* v = curl_version(); | ; | return 0; | } configure:33096: result: no configure:33282: checking for reentrant Sybase libraries configure:33293: result: no configure:33398: checking for Sybase configure:33426: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include -DSYB_LP64 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lblk64 -lct64 -lcs64 -lsybtcl64 -lcomn64 -lintl64 -lnsl -ldl -lm -lpthread >&5 conftest.cpp:194:10: fatal error: ctpublic.h: No such file or directory 194 | #include | ^~~~~~~~~~~~ compilation terminated. configure:33432: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | int | main () | { | CS_RETCODE i = ct_init(0,0); i = cs_ctx_global(0,0); | ; | return 0; | } configure:33465: result: no configure:33692: checking for FreeTDS configure:33729: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lct -ltds -lnsl -lnsl -ldl -lm -lpthread >&5 conftest.cpp:195:23: fatal error: sybdb.h: No such file or directory 195 | #include | ^~~~~~~~~ compilation terminated. configure:33735: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | | #include | #include | | int | main () | { | | LOGINREC* x_login = 0; | DBPROCESS* x_dbproc = dbopen(x_login, (char*) "SRV_NAME"); | TDSLOGIN* x_tds_login = 0; | /* TDSSOCKET* x_sock = tds_connect(x_tds_login); */ | tds_set_timeouts(x_tds_login, 0, 0, 0); | | ; | return 0; | } configure:33768: result: no configure:33833: checking for mysql_config configure:33867: result: no configure:34109: checking for Berkeley DB libraries configure:34138: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -L/lib64 -Wl,-rpath,/lib64 -ldb -ldl -lm -lpthread >&5 conftest.cpp:194:10: fatal error: db.h: No such file or directory 194 | #include | ^~~~~~ compilation terminated. configure:34144: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | DB* dbp; db_create(&dbp, NULL, 0); dbp->app_private = 0; | ; | return 0; | } configure:34177: result: no configure:35634: checking for python configure:35668: result: no configure:35809: checking for python2.5 configure:35843: result: no configure:35984: checking for python2.6 configure:36018: result: no configure:36159: checking for python2.7 configure:36193: result: no configure:36334: checking for python3 configure:36353: found /usr/bin/python3 configure:36365: result: /usr/bin/python3 Traceback (most recent call last): File "/<>/c++/scripts/common/impl/python-config.py", line 4, in from distutils import sysconfig ImportError: cannot import name 'sysconfig' from 'distutils' (/usr/lib/python3.8/distutils/__init__.py) configure:36542: checking for perl configure:36561: found /usr/bin/perl configure:36573: result: /usr/bin/perl configure:36618: checking for usable Perl libraries configure:36646: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/lib/x86_64-linux-gnu/perl/5.30/CORE -D_REENTRANT -D_GNU_SOURCE -DDEBIAN -I/usr/local/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -L/usr/lib/x86_64-linux-gnu/perl/5.30/CORE -Wl,-rpath,/usr/lib/x86_64-linux-gnu/perl/5.30/CORE -lperl -lgdbm -lgdbm_compat -ldb -ldl -lm -lpthread -lc -lcrypt -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:203:18: warning: unused variable 'p' [-Wunused-variable] 203 | PerlInterpreter* p = perl_alloc(); | ^ /usr/bin/ld: cannot find -lperl /usr/bin/ld: cannot find -lgdbm /usr/bin/ld: cannot find -lgdbm_compat /usr/bin/ld: cannot find -ldb collect2: error: ld returned 1 exit status configure:36652: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | /* end confdefs.h. */ | | #include | #include | int | main () | { | PerlInterpreter* p = perl_alloc(); | ; | return 0; | } configure:36685: result: no configure:37085: checking Boost version configure:37120: result: 1_67 configure:37168: checking for Boost library name tag configure:37243: result: -gcc90-mt-1_67-64 (autodetected) configure:37272: checking for Boost.Regex configure:37300: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_regex-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_regex-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37306: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | throw boost::regex_error(boost::regex_constants::error_stack); | ; | return 0; | } configure:37339: result: no configure:37342: checking for Boost.Spirit configure:37384: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DBOOST_ERROR_CODE_HEADER_ONLY -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 In file included from conftest.cpp:198: /usr/include/boost/spirit.hpp:18:4: warning: #warning "This header is deprecated. Please use: boost/spirit/include/classic.hpp" [-Wcpp] 18 | # warning "This header is deprecated. Please use: boost/spirit/include/classic.hpp" | ^~~~~~~ configure:37390: $? = 0 configure:37397: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:37400: $? = 0 configure:37407: test -s conftest configure:37410: $? = 0 configure:37423: result: yes configure:37433: checking for Boost.System configure:37461: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_system-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 conftest.cpp: In function 'int main()': conftest.cpp:202:14: warning: unused variable 's' [-Wunused-variable] 202 | const char * s = boost::system::system_category().name(); | ^ /usr/bin/ld: cannot find -lboost_system-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37467: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | const char * s = boost::system::system_category().name(); | ; | return 0; | } configure:37502: result: no configure:37514: checking for Boost.Chrono configure:37542: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_chrono-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_chrono-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37548: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | boost::chrono::system_clock::now(); | ; | return 0; | } configure:37581: result: no configure:37593: checking for Boost.Filesystem configure:37621: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_filesystem-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_filesystem-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37627: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | return boost::filesystem::portable_name("foo"); | ; | return 0; | } configure:37660: result: no configure:37670: checking for Boost.Iostreams configure:37698: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_iostreams-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_iostreams-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37704: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | boost::iostreams::file_descriptor fd; | ; | return 0; | } configure:37737: result: no configure:37747: checking for Boost.Program-Options configure:37775: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_program_options-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_program_options-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37781: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | boost::program_options::option_description od; | ; | return 0; | } configure:37814: result: no configure:37824: checking for Boost.Serialization configure:37853: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_serialization-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_serialization-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37859: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | #include | int | main () | { | boost::archive::text_oarchive oa(std::cout); | ; | return 0; | } configure:37892: result: no configure:37920: checking for Boost.Test configure:37959: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldl -lm -lpthread >&5 configure:37965: $? = 0 configure:37972: test -z "$ac_cxx_werror_flag" || test ! -s conftest.err configure:37975: $? = 0 configure:37982: test -s conftest configure:37985: $? = 0 configure:37959: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNCBI_BOOST_NOT_INCLUDED -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_unit_test_framework-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_unit_test_framework-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:37965: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #ifdef NCBI_BOOST_NOT_INCLUDED | # include | #else | # include | #endif | using boost::unit_test::test_suite; | static void s_Test1(void) { BOOST_CHECK(1 == 1); } | test_suite* init_unit_test_suite(int, char*[]) | { | test_suite* test = BOOST_TEST_SUITE("foo"); | test->add(BOOST_TEST_CASE(&s_Test1), 0); | return test; | } configure:38005: result: included-only configure:38015: checking for Boost.Thread configure:38043: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lboost_thread-gcc90-mt-1_67-64 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lboost_thread-gcc90-mt-1_67-64 collect2: error: ld returned 1 exit status configure:38049: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | /* end confdefs.h. */ | #include | int | main () | { | boost::mutex m; boost::mutex::scoped_lock l(m); | ; | return 0; | } configure:38082: result: no configure:38271: checking for the NCBI C toolkit configure:38299: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include64 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -L/lib64 /lib64/ncbithr.o -lncbi -lnsl -ldl -lm -lpthread >&5 g++: error: /lib64/ncbithr.o: No such file or directory configure:38305: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | /* end confdefs.h. */ | #include | int | main () | { | Nlm_Boolean b = Nlm_GetArgs("fake", -1, 0); | ; | return 0; | } configure:38338: result: no configure:38380: checking for X configure:38495: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:200:10: fatal error: X11/Xlib.h: No such file or directory 200 | #include | ^~~~~~~~~~~~ compilation terminated. configure:38501: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | /* end confdefs.h. */ | #include configure:38557: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lXt -ldl -lm -lpthread >&5 conftest.cpp:200:10: fatal error: X11/Xlib.h: No such file or directory 200 | #include | ^~~~~~~~~~~~ compilation terminated. configure:38563: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | /* end confdefs.h. */ | #include | int | main () | { | XrmInitialize () | ; | return 0; | } configure:38627: result: no configure:39969: checking for XextCreateExtension in -lXext configure:40004: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lXext -lX11 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lXext /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status configure:40010: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char XextCreateExtension (); | int | main () | { | return XextCreateExtension (); | ; | return 0; | } configure:40044: result: no configure:40052: checking for XtMainLoop in -lXt configure:40087: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lXt -lX11 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lXt /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status configure:40093: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char XtMainLoop (); | int | main () | { | return XtMainLoop (); | ; | return 0; | } configure:40127: result: no configure:40135: checking for XmuMakeAtom in -lXmu configure:40170: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lXmu -lX11 -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lXmu /usr/bin/ld: cannot find -lX11 collect2: error: ld returned 1 exit status configure:40176: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char XmuMakeAtom (); | int | main () | { | return XmuMakeAtom (); | ; | return 0; | } configure:40210: result: no configure:40331: checking for OpenGL configure:40365: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lGLU -lGL -lX11 -ldl -lm -lpthread >&5 conftest.cpp:205:23: fatal error: GL/gl.h: No such file or directory 205 | # include | ^~~~~~~~~ compilation terminated. configure:40371: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | | #ifdef NCBI_OS_DARWIN | # include | #else | # include | #endif | | int | main () | { | glBegin(0); | ; | return 0; | } configure:40404: result: no configure:41059: checking for wx-config configure:41093: result: no configure:41155: checking for wxWidgets configure:41258: result: no configure:41413: checking for FastCGI libraries configure:41440: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include64 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -L/lib64 -Wl,-rpath,/lib64 -lfcgi -lnsl -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: fcgiapp.h: No such file or directory 201 | #include | ^~~~~~~~~~~ compilation terminated. configure:41446: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | (void) FCGX_IsCGI(); | ; | return 0; | } configure:41479: result: no configure:41492: checking for FCGX_Accept_r configure:41548: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include64 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -L/lib64 -Wl,-rpath,/lib64 -lfcgi -lnsl -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -lfcgi collect2: error: ld returned 1 exit status configure:41554: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | /* Define FCGX_Accept_r to an innocuous variant, in case declares FCGX_Accept_r. | For example, HP-UX 11i declares gettimeofday. */ | #define FCGX_Accept_r innocuous_FCGX_Accept_r | | /* System header to define __stub macros and hopefully few prototypes, | which can conflict with char FCGX_Accept_r (); below. | Prefer to if __STDC__ is defined, since | exists even on freestanding compilers. */ | | #ifdef __STDC__ | # include | #else | # include | #endif | | #undef FCGX_Accept_r | | /* Override any GCC internal prototype to avoid an error. | Use char because int might match the return type of a GCC | builtin and then its argument prototype would still apply. */ | #ifdef __cplusplus | extern "C" | #endif | char FCGX_Accept_r (); | /* The GNU C library defines this for functions which it implements | to always fail with ENOSYS. Some functions are actually named | something starting with __ and the normal name is an alias. */ | #if defined __stub_FCGX_Accept_r || defined __stub___FCGX_Accept_r | choke me | #endif | | int | main () | { | return FCGX_Accept_r (); | ; | return 0; | } configure:41588: result: no configure:41657: checking for NCBI SSS directories in /sss/BUILD configure:41663: result: no configure:41915: checking for SP directories configure:41918: result: no configure:42135: checking for ORBacus configure:42168: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lOB -lJTC -lnsl -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: OB/CORBA.h: No such file or directory 201 | #include | ^~~~~~~~~~~~ compilation terminated. configure:42174: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | | int c = 0; | char* v[] = { NULL }; | CORBA::ORB_var orb = CORBA::ORB_init(c, v); | if (!CORBA::is_nil(orb)) orb->destroy(); | | ; | return 0; | } configure:42207: result: no configure:42255: checking for ICU configure:42359: result: no configure:42505: checking for libexpat configure:42533: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lexpat -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: expat.h: No such file or directory 201 | #include | ^~~~~~~~~ compilation terminated. configure:42539: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | XML_Parser parser = XML_ParserCreate("utf-8"); | ; | return 0; | } configure:42572: result: no configure:42702: checking for libsablot configure:42730: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lsablot -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: sablot.h: No such file or directory 201 | #include | ^~~~~~~~~~ compilation terminated. configure:42736: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | SDOM_Document* D; int x = SablotParse(NULL, "file:/dev/null", D); | ; | return 0; | } configure:42769: result: no configure:42890: checking for libxml2 configure:42918: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/usr/include/libxml2 -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lxml2 -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: libxml/parser.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~ compilation terminated. configure:42924: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | xmlDocPtr doc = xmlParseFile("foo.xml"); | ; | return 0; | } configure:42957: result: no configure:43076: checking for libxslt configure:43104: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lxslt -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: libxslt/xslt.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~ compilation terminated. configure:43110: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | xsltInit() | ; | return 0; | } configure:43143: result: no configure:43182: checking for xsltproc configure:43214: result: : configure:43311: checking for libexslt configure:43339: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lexslt -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: libexslt/exslt.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~ compilation terminated. configure:43345: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | exsltRegisterAll() | ; | return 0; | } configure:43378: result: no configure:43542: checking for Xerces-C++ configure:43572: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lxerces-c -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: xercesc/dom/DOM.hpp: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:43578: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | xercesc::DOMImplementation* impl | = xercesc::DOMImplementationRegistry::getDOMImplementation | (xercesc::XMLString::transcode("XML 1.0")); | ; | return 0; | } configure:43611: result: no configure:43767: checking for Xalan-C++ configure:43795: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lxalan-c -lxalanMsg -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: xalanc/XalanTransformer/XalanTransformer.hpp: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:43801: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | xalanc::XalanTransformer::initialize(); | ; | return 0; | } configure:43834: result: no configure:43999: checking for Zorba configure:44027: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lzorba_simplestore -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: zorba/zorba.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~ compilation terminated. configure:44033: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | zorba::Version v = zorba::Zorba::version(); | ; | return 0; | } configure:44066: result: no configure:44237: checking for libsqlite3 configure:44266: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lsqlite3 -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: sqlite3.h: No such file or directory 201 | #include | ^~~~~~~~~~~ compilation terminated. configure:44272: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | sqlite3_pcache_methods m; | int status = sqlite3_config(SQLITE_CONFIG_GETPCACHE, &m); | ; | return 0; | } configure:44305: result: no configure:44997: checking for liboechem configure:45025: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -loechem -loeiupac -loedepict -loechem -loesystem -loeplatform -lz -lnsl -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: oechem.h: No such file or directory 201 | #include | ^~~~~~~~~~ compilation terminated. configure:45031: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | OEChem::OEMol mol; OEChem::OEConfBase* c = mol.GetActive(); | ; | return 0; | } configure:45064: result: no configure:45236: checking for libdrmaa configure:45265: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ldrmaa -ldl -lm -lpthread >&5 conftest.cpp:202:32: fatal error: drmaa.h: No such file or directory 202 | #include | ^~~~~~~~~ compilation terminated. configure:45271: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | char buf[1024]; drmaa_init("SGE", buf, sizeof(buf)); | ; | return 0; | } configure:45304: result: no configure:45441: checking for libmuparser configure:45469: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lmuparser -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: muParser.h: No such file or directory 201 | #include | ^~~~~~~~~~~~ compilation terminated. configure:45475: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | mu::Parser parser; | ; | return 0; | } configure:45508: result: no configure:45645: checking for libhdf5_cpp configure:45673: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lhdf5_cpp -lhdf5 -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: H5Cpp.h: No such file or directory 201 | #include | ^~~~~~~~~ compilation terminated. configure:45679: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | H5::H5Library::open(); | ; | return 0; | } configure:45712: result: no configure:45824: checking for libjpeg configure:45859: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ljpeg -ldl -lm -lpthread >&5 conftest.cpp:204:28: fatal error: jpeglib.h: No such file or directory 204 | #include | ^~~~~~~~~~~ compilation terminated. configure:45865: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #include | extern "C" { | #include | } | int | main () | { | struct jpeg_decompress_struct cinfo; | struct jpeg_error_mgr jerr; | cinfo.err = jpeg_std_error(&jerr); | | ; | return 0; | } configure:45898: result: no configure:46007: checking for libpng configure:46037: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I$(includedir)/util/compress/zlib -I$(includedir0)/util/compress/zlib -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lpng -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: png.h: No such file or directory 201 | #include | ^~~~~~~ compilation terminated. configure:46043: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | png_structp png_ptr | = png_create_read_struct(PNG_LIBPNG_VER_STRING, NULL, NULL, NULL); | | ; | return 0; | } configure:46076: result: no configure:46185: checking for libtiff configure:46213: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -ltiff -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: tiffio.h: No such file or directory 201 | #include | ^~~~~~~~~~ compilation terminated. configure:46219: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | TIFF* tiff = TIFFOpen("foo", "r"); | ; | return 0; | } configure:46252: result: no configure:46363: checking for libgif configure:46393: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lgif -lX11 -ldl -lm -lpthread >&5 conftest.cpp:202:28: fatal error: gif_lib.h: No such file or directory 202 | #include | ^~~~~~~~~~~ compilation terminated. configure:46399: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | extern "C" { | #include | } | int | main () | { | GifFileType* fp = DGifOpenFileName("foo"); | ; | return 0; | } configure:46432: result: no configure:46540: checking for libungif configure:46570: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lungif -lX11 -ldl -lm -lpthread >&5 conftest.cpp:202:31: fatal error: gif_lib.h: No such file or directory 202 | #include | ^~~~~~~~~~~ compilation terminated. configure:46576: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | extern "C" { | #include | } | int | main () | { | GifFileType* fp = DGifOpenFileName("foo"); | ; | return 0; | } configure:46609: result: no configure:46727: checking for libXpm configure:46756: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lXpm -lX11 -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: X11/xpm.h: No such file or directory 201 | #include | ^~~~~~~~~~~ compilation terminated. configure:46762: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | XpmImage image; XpmInfo info; | XpmReadFileToXpmImage("foo", &image, &info); | ; | return 0; | } configure:46795: result: no configure:47036: checking for freetype-config configure:47070: result: no configure:47439: checking for libftgl configure:47467: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lftgl -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: FTGL/ftgl.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:47473: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | FTSimpleLayout layout; | ; | return 0; | } configure:47506: result: no configure:47615: checking for libmagic configure:47643: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lmagic -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: magic.h: No such file or directory 201 | #include | ^~~~~~~~~ compilation terminated. configure:47649: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | magic_t m = magic_open(17); | ; | return 0; | } configure:47682: result: no configure:47855: checking for libmimetic configure:47883: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lmimetic -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: mimetic/mimetic.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:47889: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | mimetic::MimeEntity me; | ; | return 0; | } configure:47922: result: no configure:48031: checking for soapcpp2 configure:48065: result: no configure:48072: checking for wsdl2h configure:48106: result: no configure:48193: checking for libgsoapssl++ configure:48239: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lgsoapssl++ -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: stdsoap2.h: No such file or directory 201 | #include | ^~~~~~~~~~~~ compilation terminated. configure:48245: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultcode(struct soap*) | { return NULL; } | SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultsubcode(struct soap*) | { return NULL; } | SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultstring(struct soap*) | { return NULL; } | SOAP_FMAC3 const char** SOAP_FMAC4 soap_faultdetail(struct soap*) | { return NULL; } | SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultsubcode(struct soap*) | { return NULL; } | SOAP_FMAC3 const char* SOAP_FMAC4 soap_check_faultdetail(struct soap*) | { return NULL; } | SOAP_FMAC3 void SOAP_FMAC4 soap_serializeheader(struct soap*) { } | SOAP_FMAC3 int SOAP_FMAC4 soap_putheader(struct soap*) { return 0; } | SOAP_FMAC3 int SOAP_FMAC4 soap_getheader(struct soap*) { return 0; } | SOAP_FMAC3 void SOAP_FMAC4 soap_serializefault(struct soap*) { } | SOAP_FMAC3 int SOAP_FMAC4 soap_putfault(struct soap*) { return 0; } | SOAP_FMAC3 int SOAP_FMAC4 soap_getfault(struct soap*) { return 0; } | int | main () | { | soap s; | ; | return 0; | } configure:48278: result: no configure:48419: checking for libavrocpp configure:48447: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lavrocpp -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: avro/Node.hh: No such file or directory 201 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:48453: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | avro::Name name("foo"); | ; | return 0; | } configure:48486: result: no configure:48587: checking for USC Cereal configure:48616: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -I/include -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:202:39: fatal error: cereal/archives/binary.hpp: No such file or directory 202 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:48622: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | cereal::BinaryOutputArchive | archive(std::cout); | ; | return 0; | } configure:48654: result: no configure:48751: checking for libsasl2 configure:48780: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lsasl2 -ldl -lm -lpthread >&5 conftest.cpp:202:31: fatal error: sasl/sasl.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:48786: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | sasl_client_init(NULL); | ; | return 0; | } configure:48819: result: no configure:48985: checking for libmongoclient configure:49015: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lmongoclient -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: mongo/client/dbclient.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49021: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | std::vector v; | mongo::DBClientReplicaSet client("foo", v); | client.connect(); | ; | return 0; | } configure:49054: result: no configure:49240: checking for libmongocxx configure:49268: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -Wno-unused-local-typedefs -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lmongocxx -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: mongocxx/client.hpp: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49274: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | mongocxx::client mongo_client; | ; | return 0; | } configure:49307: result: no configure:49466: checking for libleveldb configure:49495: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lleveldb -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: leveldb/db.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:49501: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | using namespace leveldb; | int | main () | { | DB* db; Status status = DB::Open(Options(), "foo", &db); | ; | return 0; | } configure:49534: result: no configure:49718: checking for libgmock configure:49748: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lgmock -lgtest -ldl -lm -lpthread >&5 conftest.cpp:201:10: fatal error: gmock/gmock.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~ compilation terminated. configure:49754: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | int my_argc; | char** my_argv; | testing::InitGoogleMock(&my_argc, my_argv); | ; | return 0; | } configure:49787: result: no configure:49863: checking lapacke.h usability configure:49880: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:234:10: fatal error: lapacke.h: No such file or directory 234 | #include | ^~~~~~~~~~~ compilation terminated. configure:49886: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:49917: result: no configure:49921: checking lapacke.h presence configure:49936: gcc -E -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:201:10: fatal error: lapacke.h: No such file or directory 201 | #include | ^~~~~~~~~~~ compilation terminated. configure:49942: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include configure:49963: result: no configure:49996: checking for lapacke.h configure:50004: result: no configure:49863: checking lapacke/lapacke.h usability configure:49880: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:234:10: fatal error: lapacke/lapacke.h: No such file or directory 234 | #include | ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49886: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:49917: result: no configure:49921: checking lapacke/lapacke.h presence configure:49936: gcc -E -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:201:10: fatal error: lapacke/lapacke.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49942: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include configure:49963: result: no configure:49996: checking for lapacke/lapacke.h configure:50004: result: no configure:49863: checking clapack.h usability configure:49880: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:234:10: fatal error: clapack.h: No such file or directory 234 | #include | ^~~~~~~~~~~ compilation terminated. configure:49886: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:49917: result: no configure:49921: checking clapack.h presence configure:49936: gcc -E -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:201:10: fatal error: clapack.h: No such file or directory 201 | #include | ^~~~~~~~~~~ compilation terminated. configure:49942: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include configure:49963: result: no configure:49996: checking for clapack.h configure:50004: result: no configure:49863: checking Accelerate/Accelerate.h usability configure:49880: /usr/bin/gcc -std=gnu11 -fgnu89-inline -c -Wall -Wno-format-y2k -pthread -fopenmp -O2 -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -fPIC -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c >&5 conftest.c:234:10: fatal error: Accelerate/Accelerate.h: No such file or directory 234 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49886: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:49917: result: no configure:49921: checking Accelerate/Accelerate.h presence configure:49936: gcc -E -DHAVE_LAPACK_CONFIG_H -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.c conftest.c:201:10: fatal error: Accelerate/Accelerate.h: No such file or directory 201 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:49942: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include configure:49963: result: no configure:49996: checking for Accelerate/Accelerate.h configure:50004: result: no configure:50191: checking for liblapack configure:50219: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -llapack -lblas -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -llapack /usr/bin/ld: cannot find -lblas collect2: error: ld returned 1 exit status configure:50225: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | extern "C" int dsyev_(); | int | main () | { | return dsyev_(); | ; | return 0; | } configure:50258: result: no configure:50367: checking for liblmdb configure:50395: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -llmdb -lpthread -ldl -lm -lpthread >&5 /usr/bin/ld: cannot find -llmdb collect2: error: ld returned 1 exit status configure:50401: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | /* end confdefs.h. */ | #include | int | main () | { | MDB_env *env; return mdb_env_create(&env); | ; | return 0; | } configure:50434: result: no configure:50462: using local LMDB copy in util/lmdb configure:50645: checking for libuv configure:50673: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -luv -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: uv.h: No such file or directory 202 | #include | ^~~~~~ compilation terminated. configure:50679: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | uv_mutex_t m; return uv_mutex_init(&m); | ; | return 0; | } configure:50712: result: no configure:50903: checking for libssh2 configure:50931: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lssh2 -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: libssh2.h: No such file or directory 202 | #include | ^~~~~~~~~~~ compilation terminated. configure:50937: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | return libssh2_init(LIBSSH2_INIT_NO_CRYPTO); | ; | return 0; | } configure:50970: result: no configure:51127: checking for libcassandra configure:51155: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lcassandra -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: cassandra.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~ compilation terminated. configure:51161: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | CassCluster* c = cass_cluster_new(); | ; | return 0; | } configure:51194: result: no configure:51382: checking for libnghttp2 configure:51410: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lnghttp2 -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: nghttp2/nghttp2.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:51416: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | nghttp2_session_client_new(NULL, NULL, NULL); | ; | return 0; | } configure:51449: result: no configure:51609: checking for libh2o configure:51637: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lh2o -ldl -lm -lpthread >&5 conftest.cpp:202:17: warning: extra tokens at end of #include directive 202 | #include > | ^ conftest.cpp:202:10: fatal error: h2o.h: No such file or directory 202 | #include > | ^~~~~~~ compilation terminated. configure:51643: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include > | int | main () | { | h2o_init_request(NULL, NULL, NULL); | ; | return 0; | } configure:51676: result: no configure:51721: checking for influxdb-cpp configure:51747: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:202:10: fatal error: influxdb.hpp: No such file or directory 202 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:51753: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | auto& b = influxdb_cpp::builder().meas("foo"); | ; | return 0; | } configure:51785: result: no configure:51880: checking for libxlsxwriter configure:51908: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lxlsxwriter -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: xlsxwriter.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~~ compilation terminated. configure:51914: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | lxw_workbook* wb = workbook_new("conftest.xlsx"); | ; | return 0; | } configure:51947: result: no configure:52111: checking for libprotobuf configure:52139: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -lprotobuf -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: google/protobuf/type.pb.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~~~~~~~~~~~~~~~ compilation terminated. configure:52145: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | int | main () | { | google::protobuf::Type t; | ; | return 0; | } configure:52178: result: no configure:52614: checking gsl/gsl usability configure:52631: /usr/bin/g++ -std=gnu++14 -c -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp >&5 conftest.cpp:235:10: fatal error: gsl/gsl: No such file or directory 235 | #include | ^~~~~~~~~ compilation terminated. configure:52637: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | #if HAVE_SYS_TYPES_H | # include | #endif | #if HAVE_SYS_STAT_H | # include | #endif | #if STDC_HEADERS | # include | # include | #else | # if HAVE_STDLIB_H | # include | # endif | #endif | #if HAVE_STRING_H | # if !STDC_HEADERS && HAVE_MEMORY_H | # include | # endif | # include | #endif | #if HAVE_STRINGS_H | # include | #endif | #if HAVE_INTTYPES_H | # include | #endif | #if HAVE_STDINT_H | # include | #endif | #if HAVE_UNISTD_H | # include | #endif | #include configure:52668: result: no configure:52672: checking gsl/gsl presence configure:52687: /usr/bin/g++ -std=gnu++14 -E -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE conftest.cpp conftest.cpp:202:10: fatal error: gsl/gsl: No such file or directory 202 | #include | ^~~~~~~~~ compilation terminated. configure:52693: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include configure:52714: result: no configure:52747: checking for gsl/gsl configure:52755: result: no configure:52899: checking for libaws-cpp-sdk-s3 configure:52929: /usr/bin/g++ -std=gnu++14 -o conftest -Wall -Wno-format-y2k -pthread -fopenmp -O -fdebug-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -fPIC -DNDEBUG -D_LARGEFILE_SOURCE -D_FILE_OFFSET_BITS=64 -D_LARGEFILE64_SOURCE -Wdate-time -D_FORTIFY_SOURCE=2 -D_MT -D_REENTRANT -D_THREAD_SAFE -Wl,--enable-new-dtags -Wl,-export-dynamic -pthread -fopenmp -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -O conftest.cpp -laws-cpp-sdk-s3 -laws-cpp-sdk-ec2 -laws-cpp-sdk-core -ldl -lm -lpthread >&5 conftest.cpp:202:10: fatal error: aws/s3/S3Client.h: No such file or directory 202 | #include | ^~~~~~~~~~~~~~~~~~~ compilation terminated. configure:52935: $? = 1 configure: failed program was: | /* confdefs.h. */ | #define HAVE_PSG_LOADER 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | #define NCBI_COMPILER "GCC" | #define NCBI_COMPILER_GCC 1 | #define NCBI_COMPILER_VERSION 900 | #define _GNU_SOURCE 1 | #define STDC_HEADERS 1 | #define HAVE_SYS_TYPES_H 1 | #define HAVE_SYS_STAT_H 1 | #define HAVE_STDLIB_H 1 | #define HAVE_STRING_H 1 | #define HAVE_MEMORY_H 1 | #define HAVE_STRINGS_H 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_STDINT_H 1 | #define HAVE_UNISTD_H 1 | #define SIZEOF_SIZE_T 8 | #define NCBI_PLATFORM_BITS 64 | #define NCBI_SIGNATURE "GCC_900-ReleaseMT64--x86_64-pc-linux4.19.0-gnu2.30-gcc131" | #define NCBI_DLL_SUPPORT 1 | #define HAVE_IOSTREAM 1 | #define HAVE_FSTREAM 1 | #define HAVE_STRSTREAM 1 | #define HAVE_INTTYPES_H 1 | #define HAVE_LIMITS 1 | #define HAVE_LIMITS_H 1 | #define HAVE_UNISTD_H 1 | #define NCBI_OS_UNIX 1 | #define NCBI_OS "UNIX" | #define NCBI_OS_LINUX 1 | #define HAVE_WSTRING 1 | #define HAVE_SOCKLEN_T 1 | #define HAVE_CPUID_H 1 | #define HAVE_DLFCN_H 1 | #define HAVE_POLL_H 1 | #define HAVE_SYS_EPOLL_H 1 | #define HAVE_SYS_MOUNT_H 1 | #define HAVE_SYS_STATVFS_H 1 | #define HAVE_SYS_SYSINFO_H 1 | #define HAVE_SYS_VFS_H 1 | #define HAVE_X86INTRIN_H 1 | #define HAVE_ALLOCA_H 1 | #define HAVE_ARPA_INET_H 1 | #define HAVE_DIRENT_H 1 | #define HAVE_ERRNO_H 1 | #define HAVE_FCNTL_H 1 | #define HAVE_GETOPT_H 1 | #define HAVE_LANGINFO_H 1 | #define HAVE_LIBGEN_H 1 | #define HAVE_LOCALE_H 1 | #define HAVE_MALLOC_H 1 | #define HAVE_NETDB_H 1 | #define HAVE_NETINET_IN_H 1 | #define HAVE_NETINET_TCP_H 1 | #define HAVE_PATHS_H 1 | #define HAVE_SIGNAL_H 1 | #define HAVE_STDBOOL_H 1 | #define HAVE_STDDEF_H 1 | #define HAVE_SYS_EVENTFD_H 1 | #define HAVE_SYS_FILE_H 1 | #define HAVE_SYS_IOCTL_H 1 | #define HAVE_SYS_PARAM_H 1 | #define HAVE_SYS_RESOURCE_H 1 | #define HAVE_SYS_SELECT_H 1 | #define HAVE_SYS_SOCKET_H 1 | #define HAVE_SYS_TIME_H 1 | #define HAVE_SYS_WAIT_H 1 | #define HAVE_WCHAR_H 1 | #define TIME_WITH_SYS_TIME 1 | #define HAVE_CXXABI_H 1 | #define HAVE_CXA_DEMANGLE 1 | #define HAVE_GETHOSTBYNAME_R 6 | #define HAVE_GETHOSTBYADDR_R 8 | #define HAVE_GETSERVBYNAME_R 6 | #define NCBI_HAVE_GETPWUID_R 5 | #define HAVE_GETLOGIN_R 1 | #define HAVE_LOCALTIME_R 1 | #define HAVE_PTHREAD_SETCONCURRENCY 1 | #define HAVE_PTHREAD_ATFORK 1 | #define HAVE_FUNC_LOCALTIME_R_TM 1 | #define HAVE_PTHREAD_MUTEX 1 | #define HAVE_VPRINTF 1 | #define HAVE_ALARM 1 | #define HAVE_ASPRINTF 1 | #define HAVE_ATOLL 1 | #define HAVE_BASENAME 1 | #define HAVE_DAEMON 1 | #define HAVE_EUIDACCESS 1 | #define HAVE_EVENTFD 1 | #define HAVE_FSEEKO 1 | #define HAVE_FSTAT 1 | #define HAVE_GETGROUPLIST 1 | #define HAVE_GETOPT 1 | #define HAVE_GETPAGESIZE 1 | #define HAVE_GETPASS 1 | #define HAVE_GETPWUID 1 | #define HAVE_GETRUSAGE 1 | #define HAVE_GETTIMEOFDAY 1 | #define HAVE_GETUID 1 | #define HAVE_LCHOWN 1 | #define HAVE_LUTIMES 1 | #define HAVE_MEMRCHR 1 | #define HAVE_NL_LANGINFO 1 | #define HAVE_POLL 1 | #define HAVE_PUTENV 1 | #define HAVE_READV 1 | #define HAVE_SELECT 1 | #define HAVE_SETENV 1 | #define HAVE_SETITIMER 1 | #define HAVE_SETRLIMIT 1 | #define HAVE_SNPRINTF 1 | #define HAVE_STATFS 1 | #define HAVE_STATVFS 1 | #define HAVE_STRCASECMP 1 | #define HAVE_STRDUP 1 | #define HAVE_STRNDUP 1 | #define HAVE_STRNLEN 1 | #define HAVE_STRSEP 1 | #define HAVE_STRTOK_R 1 | #define HAVE_TIMEGM 1 | #define HAVE_USLEEP 1 | #define HAVE_UTIMES 1 | #define HAVE_VASPRINTF 1 | #define HAVE_VSNPRINTF 1 | #define HAVE_WRITEV 1 | #define RETSIGTYPE void | #define SELECT_UPDATES_TIMEOUT 1 | #define HAVE_STRCASECMP_LC 1 | #define HAVE_SYSINFO_1 1 | #define HAVE_GETLOADAVG 1 | #define NCBI_HAVE_READDIR_R 3 | #define NCBI_HAVE_STDIO_LOCKED 1 | #define SIZEOF_CHAR 1 | #define SIZEOF_DOUBLE 8 | #define SIZEOF_FLOAT 4 | #define SIZEOF_INT 4 | #define SIZEOF_LONG 4 | #define SIZEOF_LONG_DOUBLE 16 | #define SIZEOF_LONG_LONG 8 | #define SIZEOF_SHORT 2 | #define SIZEOF_VOIDP 8 | #define SIZEOF_WCHAR_T 4 | #define SIZEOF___INT64 0 | #define HAVE_INTPTR_T 1 | #define HAVE_UINTPTR_T 1 | #define HAVE_STRUCT_TM_TM_ZONE 1 | #define NCBI_USE_THROW_SPEC 1 | #define HAVE_IOS_REGISTER_CALLBACK 1 | #define HAVE_SYSV_SEMAPHORES 1 | #define STACK_GROWS_UP 1 | #define HAVE_CPP_STD_VARARGS 1 | #define HAVE_CPP_GNU_VARARGS 1 | #define NCBI_DEPRECATED __attribute__((__deprecated__)) | #define NCBI_FORCEINLINE inline __attribute__((always_inline)) | #define HAVE_ATTRIBUTE_DESTRUCTOR 1 | #define NCBI_RESTRICT_C __restrict__ | #define HAVE_RESTRICT_C 1 | #define NCBI_RESTRICT_CXX __restrict__ | #define HAVE_RESTRICT_CXX 1 | #define NCBI_NORETURN __attribute__((__noreturn__)) | #define NCBI_WARN_UNUSED_RESULT __attribute__((warn_unused_result)) | #define NCBI_TLS_VAR __thread | #define NCBI_PACKED __attribute__((__packed__)) | #define HAVE_UNALIGNED_READS 1 | #define HAVE_VECTOR_MATH 1 | #define HAVE_BUILTIN_BSWAP 1 | #define HAVE_BUILTIN_EXPECT 1 | #define HAVE_GETADDRINFO 1 | #define HAVE_GETNAMEINFO 1 | #define HAVE_GETHOSTENT_R 1 | #define HAVE_INET_NTOP 1 | #define HAVE_SOCKETPAIR 1 | #define HAVE_ERF 1 | #define HAVE_LIBDL 1 | #define HAVE_LIBRT 1 | #define HAVE_CLOCK_GETTIME 1 | #define HAVE_NANOSLEEP 1 | #define HAVE_PTHREAD_CONDATTR_SETCLOCK 1 | #define HAVE_SCHED_YIELD 1 | #define HAVE_DECL_CLOCK_MONOTONIC 1 | #define HAVE_DECL_CLOCK_SGI_CYCLE 0 | #define HAVE_DECL_CLOCK_REALTIME 1 | #define HAVE_LIBICONV 1 | #define ICONV_CONST | #define USE_LOCAL_BZLIB 1 | #define USE_LOCAL_PCRE 1 | #define HAVE_SQLLEN 1 | #define HAVE_SQLSETPOSIROW 1 | #define NCBI_SQLCOLATTRIBUTE_SQLLEN 1 | #define NCBI_EXPECTED_BOOST_VERSION 106700 | #define HAVE_BOOST_SPIRIT 1 | #define HAVE_BOOST_TEST 1 | #define X_DISPLAY_MISSING 1 | #define USE_LOCAL_LMDB 1 | /* end confdefs.h. */ | #include | #include | int | main () | { | Aws::S3::S3Client s3cli; | Aws::EC2::EC2Client ec2cli; | ; | return 0; | } configure:52968: result: no configure:53514: looking for configurables below /<>/c++... /^\.\/algo/d /^\.\/app/d /^\.\/dbapi/d /^\.\/objects/d /^\.\/bdb/d /^\.\/internal/d /^\.\/dll/d s%^.\(/build-system.*/Makefile*\)\.in$%/<>/c++/BUILD.native/build\1:./src\1\.in% s%^.\(/build-system\)\(/.*\)\.in$%/<>/c++/BUILD.native/build\2:./src\1\2\.in% s%^.\(/[^:]*\)\.in$%/<>/c++/BUILD.native/build\1:./src\1\.in% configure:53534: ...done configure:53952: updating cache config.cache configure:53988: creating /<>/c++/BUILD.native/status/config.status ## ---------------------- ## ## Running config.status. ## ## ---------------------- ## This file was extended by ncbi-tools++ config.status 0.0, which was generated by GNU Autoconf 2.60. Invocation command line was CONFIG_FILES = CONFIG_HEADERS = CONFIG_LINKS = CONFIG_COMMANDS = $ /<>/c++/BUILD.native/status/config.status on gcc131.bak.milne.osuosl.org config.status:1332: creating /<>/c++/BUILD.native/build/util/xregexp/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/tables/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/sequtil/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/regexp/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/lmdbxx/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/lmdb/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/creaders/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/compress/zlib/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/compress/bzip2/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/compress/api/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/compress/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/bitset/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/util/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/serial/datatool/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/serial/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/simple/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/seqmasks_io/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/readers/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/pubseq_gateway/client/test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/pubseq_gateway/client/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/pubseq_gateway/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/logging/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/format/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/edit/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/genbank/id2/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/genbank/id1/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/genbank/gicache/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/genbank/cache/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/genbank/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/blastdb/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/data_loaders/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/cleanup/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/services/unit_test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/services/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/seqdb_writer/unit_test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/seqdb_writer/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/seqdb_reader/test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/seqdb_reader/demo/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/seqdb_reader/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/gene_info_reader/unit_test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/gene_info_reader/demo/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/gene_info_reader/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/blastdb_format/unit_test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/blastdb_format/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/blast/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/alnmgr/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/align_format/unit_test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/align_format/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objtools/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objmgr/util/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objmgr/split/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/objmgr/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/misc/third_party_static/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/misc/third_party/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/misc/jsonwrapp/test/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/misc/jsonwrapp/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/misc/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/html/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/db/sqlite/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/db/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/corelib/ncbicfg.c config.status:1332: creating /<>/c++/BUILD.native/build/corelib/Makefile.precompile config.status:1332: creating /<>/c++/BUILD.native/build/corelib/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/connect/services/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/connect/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/cgi/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/config.h config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.app config.status:1332: creating /<>/c++/BUILD.native/build/new_module.sh config.status:1332: creating /<>/c++/BUILD.native/build/sysdep.sh config.status:1332: creating /<>/c++/BUILD.native/build/run_with_cd_reporter.py config.status:1332: creating /<>/c++/BUILD.native/build/run_sybase_app.sh config.status:1332: creating /<>/c++/BUILD.native/build/relocate.sh config.status:1332: creating /<>/c++/BUILD.native/build/reconfigure.sh config.status:1332: creating /<>/c++/BUILD.native/build/build-system/project_tree_builder/msbuild/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/build-system/project_tree_builder/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/install.sh config.status:1332: creating /<>/c++/BUILD.native/build/build-system/helpers/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/cmake/ncbiconf_msvc_site.h config.status:1332: creating /<>/c++/BUILD.native/build/cmake/config.cmake.h config.status:1332: creating /<>/c++/BUILD.native/build/cmake/NCBI-ToolkitConfig.cmake config.status:1332: creating /<>/c++/BUILD.native/build/check.cfg config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.top_builddir config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.rules_with_autodep config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.rules config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.protobuf config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.null config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.mk config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.metal.tmpl config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.metal config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.meta config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.lib.tmpl config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.lib config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.is_dll_support config.status:1332: creating /<>/c++/BUILD.native/build/build-system/Makefile config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.dll config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.both config.status:1332: creating /<>/c++/BUILD.native/build/Makefile.app.tmpl config.status:1332: creating /<>/c++/BUILD.native/build/Makefile config.status:1332: creating /<>/c++/./Makefile config.status:1332: creating /<>/c++/BUILD.native/inc/common/ncbi_build_ver.h config.status:1332: creating /<>/c++/include/common/ncbi_revision.h config.status:1332: creating /<>/c++/BUILD.native/inc/ncbiconf_unix.h config.status:1814: executing default commands config.status:1929: error: flat makefile generation failed. make[1]: *** [debian/rules:56: /<>/c++/BUILD.native/bin/datatool] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:170: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2020-04-27T18:10:57Z Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: 307212 Build-Time: 74 Distribution: unstable Fail-Stage: build Foreign Architectures: mipsel Host Architecture: mipsel Install-Time: 24 Job: ncbi-blast+_2.10.0-1 Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 112 Source-Version: 2.10.0-1 Space: 307212 Status: attempted Version: 2.10.0-1 -------------------------------------------------------------------------------- Finished at 2020-04-27T18:10:57Z Build needed 00:01:52, 307212k disk space