sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | ncbi-blast+ 2.16.0+ds-6 (mips64el) Sun, 09 Feb 2025 08:24:28 +0000 | +==============================================================================+ Package: ncbi-blast+ Version: 2.16.0+ds-6 Source Version: 2.16.0+ds-6 Distribution: unstable Machine Architecture: amd64 Host Architecture: mips64el Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-963fa5e5-b00e-443e-a005-9ed42c4c7def' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zq0fZM/resolver-fIiEP8' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [205 kB] Get:2 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB] Get:3 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:4 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/non-free Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [31 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [17.4 kB] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [568 B] Get:6 http://localhost:3142/debian unstable/non-free Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [31 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [15.9 kB] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [568 B] Get:7 http://localhost:3142/debian unstable/main Sources T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [17.4 kB] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-02-09-0210.34-F-2025-02-09-0210.34.pdiff [15.9 kB] Get:10 http://localhost:3142/debian unstable/main mips64el Packages [9693 kB] Fetched 10.2 MB in 2s (5162 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-blastplus.git Please use: git clone https://salsa.debian.org/med-team/ncbi-blastplus.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 18.5 MB of source archives. Get:1 http://localhost:3142/debian unstable/main ncbi-blast+ 2.16.0+ds-6 (dsc) [2498 B] Get:2 http://localhost:3142/debian unstable/main ncbi-blast+ 2.16.0+ds-6 (tar) [18.4 MB] Get:3 http://localhost:3142/debian unstable/main ncbi-blast+ 2.16.0+ds-6 (diff) [40.7 kB] Fetched 18.5 MB in 0s (193 MB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zq0fZM/ncbi-blast+-2.16.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-zq0fZM' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), autoconf2.69, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps Filtered Build-Depends: debhelper-compat (= 13), autoconf2.69, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-mips64el:amd64, libc-dev:mips64el, libstdc++-dev:mips64el, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [931 B] Get:5 copy:/<>/apt_archive ./ Packages [959 B] Fetched 2499 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf2.69 automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libboost-test-dev:mips64el libboost-test1.83-dev:mips64el libboost-test1.83.0:mips64el libboost1.83-dev:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libevent-2.1-7t64:mips64el libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp-dev:mips64el libgmp10:mips64el libgmpxx4ldbl:mips64el libgnutls-dane0t64:mips64el libgnutls-openssl27t64:mips64el libgnutls28-dev:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libhogweed6t64:mips64el libicu72 libidn2-0:mips64el libidn2-dev:mips64el libio-string-perl liblmdb-dev:mips64el liblmdb0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16:mips64el libmbedtls-dev:mips64el libmbedtls21:mips64el libmbedx509-7:mips64el libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp2-dev:mips64el libp11-kit-dev:mips64el libp11-kit0:mips64el libpcre2-16-0:mips64el libpcre2-32-0:mips64el libpcre2-8-0:mips64el libpcre2-dev:mips64el libpcre2-posix3:mips64el libpipeline1 libpkgconf3 libproc2-0 libsqlite3-0:mips64el libsqlite3-dev:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtasn1-6-dev:mips64el libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunbound8:mips64el libunistring5 libunistring5:mips64el libuv1-dev:mips64el libuv1t64:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db nettle-dev:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sensible-utils time ucf zlib1g:mips64el zlib1g-dev:mips64el Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-14-locales cpp-14-doc cpp-doc dh-make binutils-multiarch gcc-14-doc manpages-dev flex bison gdb-mips64el-linux-gnuabi64 gcc-doc gettext-doc libasprintf-dev libgettextpo-dev groff libboost1.83-doc:mips64el libboost-atomic1.83-dev:mips64el libboost-chrono1.83-dev:mips64el libboost-container1.83-dev:mips64el libboost-context1.83-dev:mips64el libboost-contract1.83-dev:mips64el libboost-coroutine1.83-dev:mips64el libboost-date-time1.83-dev:mips64el libboost-exception1.83-dev:mips64el libboost-fiber1.83-dev:mips64el libboost-filesystem1.83-dev:mips64el libboost-graph-parallel1.83-dev:mips64el libboost-graph1.83-dev:mips64el libboost-iostreams1.83-dev:mips64el libboost-json1.83-dev:mips64el libboost-locale1.83-dev:mips64el libboost-log1.83-dev:mips64el libboost-math1.83-dev:mips64el libboost-mpi-python1.83-dev:mips64el libboost-mpi1.83-dev:mips64el libboost-nowide1.83-dev:mips64el libboost-numpy1.83-dev:mips64el libboost-program-options1.83-dev:mips64el libboost-python1.83-dev:mips64el libboost-random1.83-dev:mips64el libboost-regex1.83-dev:mips64el libboost-serialization1.83-dev:mips64el libboost-stacktrace1.83-dev:mips64el libboost-system1.83-dev:mips64el libboost-thread1.83-dev:mips64el libboost-timer1.83-dev:mips64el libboost-type-erasure1.83-dev:mips64el libboost-url1.83-dev:mips64el libboost-wave1.83-dev:mips64el libboost1.83-tools-dev:mips64el libmpfrc++-dev:mips64el libntl-dev:mips64el glibc-doc:mips64el libc-l10n:mips64el locales:mips64el libnss-nis:mips64el libnss-nisplus:mips64el manpages-dev:mips64el gmp-doc:mips64el libgmp10-doc:mips64el libmpfr-dev:mips64el dns-root-data:mips64el gnutls-bin:mips64el gnutls-doc:mips64el libmbedtls-doc:mips64el libnghttp2-doc:mips64el p11-kit-doc:mips64el sqlite3-doc:mips64el libstdc++-14-doc:mips64el libtool-doc gfortran | fortran95-compiler gcj-jdk libuv1-doc:mips64el libyaml-shell-perl m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:mips64el libarchive-cpio-perl lmdb-doc:mips64el libgpm2 libtasn1-doc:mips64el libltdl-dev libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl | libyaml-syck-perl libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf autoconf2.69 automake autopoint autotools-dev binutils-mips64el-linux-gnuabi64 bsdextrautils cpp-14-mips64el-linux-gnuabi64 cpp-mips64el-linux-gnuabi64 cross-config crossbuild-essential-mips64el debhelper dh-autoreconf dh-strip-nondeterminism dpkg-cross dwz fakeroot file g++-14-mips64el-linux-gnuabi64 g++-mips64el-linux-gnuabi64 gcc-14-base:mips64el gcc-14-cross-base-mipsen gcc-14-mips64el-linux-gnuabi64 gcc-14-mips64el-linux-gnuabi64-base gcc-mips64el-linux-gnuabi64 gettext gettext-base groff-base intltool-debian libarchive-zip-perl libatomic1:mips64el libatomic1-mips64el-cross libboost-test-dev:mips64el libboost-test1.83-dev:mips64el libboost-test1.83.0:mips64el libboost1.83-dev:mips64el libbz2-1.0:mips64el libbz2-dev:mips64el libc6:mips64el libc6-dev:mips64el libc6-dev-mips64el-cross libc6-mips64el-cross libconfig-auto-perl libconfig-inifiles-perl libcrypt-dev:mips64el libcrypt1:mips64el libdebhelper-perl libdebian-dpkgcross-perl libelf1t64 libevent-2.1-7t64:mips64el libfakeroot libffi8:mips64el libfile-homedir-perl libfile-stripnondeterminism-perl libfile-which-perl libgcc-14-dev:mips64el libgcc-14-dev-mips64el-cross libgcc-s1:mips64el libgcc-s1-mips64el-cross libgmp-dev:mips64el libgmp10:mips64el libgmpxx4ldbl:mips64el libgnutls-dane0t64:mips64el libgnutls-openssl27t64:mips64el libgnutls28-dev:mips64el libgnutls30t64:mips64el libgomp1:mips64el libgomp1-mips64el-cross libhogweed6t64:mips64el libicu72 libidn2-0:mips64el libidn2-dev:mips64el libio-string-perl liblmdb-dev:mips64el liblmdb0:mips64el liblocale-gettext-perl libmagic-mgc libmagic1t64 libmbedcrypto16:mips64el libmbedtls-dev:mips64el libmbedtls21:mips64el libmbedx509-7:mips64el libncursesw6 libnettle8t64:mips64el libnghttp2-14:mips64el libnghttp2-dev:mips64el libp11-kit-dev:mips64el libp11-kit0:mips64el libpcre2-16-0:mips64el libpcre2-32-0:mips64el libpcre2-8-0:mips64el libpcre2-dev:mips64el libpcre2-posix3:mips64el libpipeline1 libpkgconf3 libproc2-0 libsqlite3-0:mips64el libsqlite3-dev:mips64el libssl3t64:mips64el libstdc++-14-dev:mips64el libstdc++-14-dev-mips64el-cross libstdc++6:mips64el libstdc++6-mips64el-cross libtasn1-6:mips64el libtasn1-6-dev:mips64el libtext-charwidth-perl libtext-wrapi18n-perl libtool libuchardet0 libunbound8:mips64el libunistring5 libunistring5:mips64el libuv1-dev:mips64el libuv1t64:mips64el libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl libxml-sax-perl libxml-simple-perl libxml2 libyaml-perl libzstd1:mips64el linux-libc-dev-mips64el-cross m4 man-db nettle-dev:mips64el pkgconf:mips64el pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:mips64el sensible-utils time ucf zlib1g:mips64el zlib1g-dev:mips64el 0 upgraded, 136 newly installed, 0 to remove and 0 not upgraded. Need to get 111 MB of archives. After this operation, 572 MB of additional disk space will be used. Get:1 copy:/<>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [1008 B] Get:2 http://localhost:3142/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-7+b1 [15.3 kB] Get:3 http://localhost:3142/debian unstable/main amd64 libncursesw6 amd64 6.5+20250125-2 [135 kB] Get:4 http://localhost:3142/debian unstable/main amd64 libproc2-0 amd64 2:4.0.4-7 [64.9 kB] Get:5 http://localhost:3142/debian unstable/main amd64 procps amd64 2:4.0.4-7 [878 kB] Get:6 http://localhost:3142/debian unstable/main amd64 sensible-utils all 0.0.24 [24.8 kB] Get:7 http://localhost:3142/debian unstable/main amd64 libmagic-mgc amd64 1:5.45-3+b1 [314 kB] Get:8 http://localhost:3142/debian unstable/main amd64 libmagic1t64 amd64 1:5.45-3+b1 [108 kB] Get:9 http://localhost:3142/debian unstable/main amd64 file amd64 1:5.45-3+b1 [43.3 kB] Get:10 http://localhost:3142/debian unstable/main amd64 gettext-base amd64 0.23.1-1 [243 kB] Get:11 http://localhost:3142/debian unstable/main amd64 libuchardet0 amd64 0.0.8-1+b2 [68.9 kB] Get:12 http://localhost:3142/debian unstable/main amd64 groff-base amd64 1.23.0-7 [1185 kB] Get:13 http://localhost:3142/debian unstable/main amd64 bsdextrautils amd64 2.40.4-3 [92.1 kB] Get:14 http://localhost:3142/debian unstable/main amd64 libpipeline1 amd64 1.5.8-1 [42.0 kB] Get:15 http://localhost:3142/debian unstable/main amd64 man-db amd64 2.13.0-1 [1420 kB] Get:16 http://localhost:3142/debian unstable/main amd64 libtext-charwidth-perl amd64 0.04-11+b4 [9476 B] Get:17 http://localhost:3142/debian unstable/main amd64 libtext-wrapi18n-perl all 0.06-10 [8808 B] Get:18 http://localhost:3142/debian unstable/main amd64 ucf all 3.0049 [42.5 kB] Get:19 http://localhost:3142/debian unstable/main amd64 m4 amd64 1.4.19-5 [294 kB] Get:20 http://localhost:3142/debian unstable/main amd64 autoconf all 2.72-3 [493 kB] Get:21 http://localhost:3142/debian unstable/main amd64 autoconf2.69 all 2.69-3.1 [291 kB] Get:22 http://localhost:3142/debian unstable/main amd64 autotools-dev all 20220109.1 [51.6 kB] Get:23 http://localhost:3142/debian unstable/main amd64 automake all 1:1.17-3 [862 kB] Get:24 http://localhost:3142/debian unstable/main amd64 autopoint all 0.23.1-1 [770 kB] Get:25 http://localhost:3142/debian unstable/main amd64 binutils-mips64el-linux-gnuabi64 amd64 2.43.50.20241230-1cross1+nmu1 [2903 kB] Get:26 http://localhost:3142/debian unstable/main amd64 gcc-14-mips64el-linux-gnuabi64-base amd64 14.2.0-13cross1 [48.8 kB] Get:27 http://localhost:3142/debian unstable/main amd64 cpp-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [9700 kB] Get:28 http://localhost:3142/debian unstable/main amd64 cpp-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [3408 B] Get:29 http://localhost:3142/debian unstable/main amd64 cross-config all 2.6.20 [16.3 kB] Get:30 http://localhost:3142/debian unstable/main amd64 gcc-14-cross-base-mipsen all 14.2.0-13cross1 [44.1 kB] Get:31 http://localhost:3142/debian unstable/main amd64 libc6-mips64el-cross all 2.40-5cross1 [1145 kB] Get:32 http://localhost:3142/debian unstable/main amd64 libgcc-s1-mips64el-cross all 14.2.0-13cross1 [86.3 kB] Get:33 http://localhost:3142/debian unstable/main amd64 libgomp1-mips64el-cross all 14.2.0-13cross1 [118 kB] Get:34 http://localhost:3142/debian unstable/main amd64 libatomic1-mips64el-cross all 14.2.0-13cross1 [7676 B] Get:35 http://localhost:3142/debian unstable/main amd64 libgcc-14-dev-mips64el-cross all 14.2.0-13cross1 [330 kB] Get:36 http://localhost:3142/debian unstable/main amd64 gcc-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [18.5 MB] Get:37 http://localhost:3142/debian unstable/main amd64 gcc-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1460 B] Get:38 http://localhost:3142/debian unstable/main amd64 libstdc++6-mips64el-cross all 14.2.0-13cross1 [620 kB] Get:39 http://localhost:3142/debian unstable/main amd64 linux-libc-dev-mips64el-cross all 6.12.8-1cross1 [2311 kB] Get:40 http://localhost:3142/debian unstable/main amd64 libc6-dev-mips64el-cross all 2.40-5cross1 [1644 kB] Get:41 http://localhost:3142/debian unstable/main amd64 libstdc++-14-dev-mips64el-cross all 14.2.0-13cross1 [2452 kB] Get:42 http://localhost:3142/debian unstable/main amd64 g++-14-mips64el-linux-gnuabi64 amd64 14.2.0-13cross1 [10.7 MB] Get:43 http://localhost:3142/debian unstable/main amd64 g++-mips64el-linux-gnuabi64 amd64 4:14.2.0-1 [1212 B] Get:44 http://localhost:3142/debian unstable/main amd64 libconfig-inifiles-perl all 3.000003-3 [44.8 kB] Get:45 http://localhost:3142/debian unstable/main amd64 libio-string-perl all 1.08-4 [12.1 kB] Get:46 http://localhost:3142/debian unstable/main amd64 libicu72 amd64 72.1-6 [9421 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libxml2 amd64 2.12.7+dfsg+really2.9.14-0.2+b1 [699 kB] Get:48 http://localhost:3142/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-2 [15.1 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libxml-sax-base-perl all 1.09-3 [20.6 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-4 [53.4 kB] Get:51 http://localhost:3142/debian unstable/main amd64 libxml-libxml-perl amd64 2.0207+dfsg+really+2.0134-5+b2 [314 kB] Get:52 http://localhost:3142/debian unstable/main amd64 libxml-simple-perl all 2.25-2 [69.8 kB] Get:53 http://localhost:3142/debian unstable/main amd64 libyaml-perl all 1.31-1 [64.8 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libconfig-auto-perl all 0.44-2 [19.2 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libfile-which-perl all 1.27-2 [15.1 kB] Get:56 http://localhost:3142/debian unstable/main amd64 libfile-homedir-perl all 1.006-2 [42.4 kB] Get:57 http://localhost:3142/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.20 [15.3 kB] Get:58 http://localhost:3142/debian unstable/main amd64 dpkg-cross all 2.6.20 [25.8 kB] Get:59 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-mips64el all 12.9 [6740 B] Get:60 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.24.1 [90.9 kB] Get:61 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-3 [539 kB] Get:62 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 20 [17.1 kB] Get:63 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:64 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.14.1-1 [19.6 kB] Get:65 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.14.1-1 [8584 B] Get:66 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.192-4 [189 kB] Get:67 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.15-1+b1 [110 kB] Get:68 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-1 [476 kB] Get:69 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-1 [1680 kB] Get:70 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:71 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:72 http://localhost:3142/debian unstable/main amd64 debhelper all 13.24.1 [920 kB] Get:73 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37-1 [29.7 kB] Get:74 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37-1 [75.6 kB] Get:75 http://localhost:3142/debian unstable/main mips64el gcc-14-base mips64el 14.2.0-16 [48.9 kB] Get:76 http://localhost:3142/debian unstable/main mips64el libgcc-s1 mips64el 14.2.0-16 [86.2 kB] Get:77 http://localhost:3142/debian unstable/main mips64el libc6 mips64el 2.40-6 [2472 kB] Get:78 http://localhost:3142/debian unstable/main mips64el libatomic1 mips64el 14.2.0-16 [8000 B] Get:79 http://localhost:3142/debian unstable/main mips64el libgomp1 mips64el 14.2.0-16 [121 kB] Get:80 http://localhost:3142/debian unstable/main mips64el libgcc-14-dev mips64el 14.2.0-16 [330 kB] Get:81 http://localhost:3142/debian unstable/main mips64el libstdc++6 mips64el 14.2.0-16 [668 kB] Get:82 http://localhost:3142/debian unstable/main mips64el libcrypt1 mips64el 1:4.4.38-1 [96.3 kB] Get:83 http://localhost:3142/debian unstable/main mips64el libcrypt-dev mips64el 1:4.4.38-1 [129 kB] Get:84 http://localhost:3142/debian unstable/main mips64el libc6-dev mips64el 2.40-6 [1654 kB] Get:85 http://localhost:3142/debian unstable/main mips64el libstdc++-14-dev mips64el 14.2.0-16 [2454 kB] Get:86 http://localhost:3142/debian unstable/main mips64el libboost1.83-dev mips64el 1.83.0-4 [10.6 MB] Get:87 http://localhost:3142/debian unstable/main mips64el libboost-test1.83.0 mips64el 1.83.0-4 [434 kB] Get:88 http://localhost:3142/debian unstable/main mips64el libboost-test1.83-dev mips64el 1.83.0-4 [555 kB] Get:89 http://localhost:3142/debian unstable/main mips64el libboost-test-dev mips64el 1.83.0.2+b2 [3632 B] Get:90 http://localhost:3142/debian unstable/main mips64el libbz2-1.0 mips64el 1.0.8-6 [39.3 kB] Get:91 http://localhost:3142/debian unstable/main mips64el libbz2-dev mips64el 1.0.8-6 [34.3 kB] Get:92 http://localhost:3142/debian unstable/main mips64el libevent-2.1-7t64 mips64el 2.1.12-stable-10+b1 [160 kB] Get:93 http://localhost:3142/debian unstable/main mips64el libffi8 mips64el 3.4.6-1 [23.5 kB] Get:94 http://localhost:3142/debian unstable/main mips64el libgmp10 mips64el 2:6.3.0+dfsg-3 [551 kB] Get:95 http://localhost:3142/debian unstable/main mips64el libgmpxx4ldbl mips64el 2:6.3.0+dfsg-3 [329 kB] Get:96 http://localhost:3142/debian unstable/main mips64el libgmp-dev mips64el 2:6.3.0+dfsg-3 [658 kB] Get:97 http://localhost:3142/debian unstable/main mips64el libnettle8t64 mips64el 3.10-1+b1 [309 kB] Get:98 http://localhost:3142/debian unstable/main mips64el libhogweed6t64 mips64el 3.10-1+b1 [326 kB] Get:99 http://localhost:3142/debian unstable/main mips64el libunistring5 mips64el 1.3-1 [452 kB] Get:100 http://localhost:3142/debian unstable/main mips64el libidn2-0 mips64el 2.3.7-2+b1 [126 kB] Get:101 http://localhost:3142/debian unstable/main mips64el libp11-kit0 mips64el 0.25.5-3 [343 kB] Get:102 http://localhost:3142/debian unstable/main mips64el libtasn1-6 mips64el 4.20.0-1 [47.1 kB] Get:103 http://localhost:3142/debian unstable/main mips64el libgnutls30t64 mips64el 3.8.8-2 [1273 kB] Get:104 http://localhost:3142/debian unstable/main mips64el libzstd1 mips64el 1.5.6+dfsg-2 [292 kB] Get:105 http://localhost:3142/debian unstable/main mips64el zlib1g mips64el 1:1.3.dfsg+really1.3.1-1+b1 [80.3 kB] Get:106 http://localhost:3142/debian unstable/main mips64el libssl3t64 mips64el 3.4.0-2 [1730 kB] Get:107 http://localhost:3142/debian unstable/main mips64el libunbound8 mips64el 1.22.0-1+b1 [542 kB] Get:108 http://localhost:3142/debian unstable/main mips64el libgnutls-dane0t64 mips64el 3.8.8-2 [445 kB] Get:109 http://localhost:3142/debian unstable/main mips64el libgnutls-openssl27t64 mips64el 3.8.8-2 [445 kB] Get:110 http://localhost:3142/debian unstable/main mips64el libidn2-dev mips64el 2.3.7-2+b1 [124 kB] Get:111 http://localhost:3142/debian unstable/main mips64el libp11-kit-dev mips64el 0.25.5-3 [208 kB] Get:112 http://localhost:3142/debian unstable/main mips64el libtasn1-6-dev mips64el 4.20.0-1 [101 kB] Get:113 http://localhost:3142/debian unstable/main mips64el nettle-dev mips64el 3.10-1+b1 [1334 kB] Get:114 http://localhost:3142/debian unstable/main mips64el libgnutls28-dev mips64el 3.8.8-2 [1390 kB] Get:115 http://localhost:3142/debian unstable/main mips64el liblmdb0 mips64el 0.9.31-1+b2 [45.4 kB] Get:116 http://localhost:3142/debian unstable/main mips64el liblmdb-dev mips64el 0.9.31-1+b2 [65.6 kB] Get:117 http://localhost:3142/debian unstable/main mips64el libmbedcrypto16 mips64el 3.6.2-3 [326 kB] Get:118 http://localhost:3142/debian unstable/main mips64el libmbedx509-7 mips64el 3.6.2-3 [143 kB] Get:119 http://localhost:3142/debian unstable/main mips64el libmbedtls21 mips64el 3.6.2-3 [214 kB] Get:120 http://localhost:3142/debian unstable/main mips64el libmbedtls-dev mips64el 3.6.2-3 [835 kB] Get:121 http://localhost:3142/debian unstable/main mips64el libnghttp2-14 mips64el 1.64.0-1 [69.5 kB] Get:122 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:123 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:124 http://localhost:3142/debian unstable/main mips64el pkgconf mips64el 1.8.1-4 [26.2 kB] Get:125 http://localhost:3142/debian unstable/main mips64el libnghttp2-dev mips64el 1.64.0-1 [117 kB] Get:126 http://localhost:3142/debian unstable/main mips64el libpcre2-16-0 mips64el 10.45-1 [263 kB] Get:127 http://localhost:3142/debian unstable/main mips64el libpcre2-32-0 mips64el 10.45-1 [253 kB] Get:128 http://localhost:3142/debian unstable/main mips64el libpcre2-8-0 mips64el 10.45-1 [282 kB] Get:129 http://localhost:3142/debian unstable/main mips64el libpcre2-posix3 mips64el 10.45-1 [63.6 kB] Get:130 http://localhost:3142/debian unstable/main mips64el libpcre2-dev mips64el 10.45-1 [840 kB] Get:131 http://localhost:3142/debian unstable/main mips64el libsqlite3-0 mips64el 3.46.1-1 [843 kB] Get:132 http://localhost:3142/debian unstable/main mips64el libsqlite3-dev mips64el 3.46.1-1 [1135 kB] Get:133 http://localhost:3142/debian unstable/main mips64el libuv1t64 mips64el 1.50.0-2 [148 kB] Get:134 http://localhost:3142/debian unstable/main mips64el libuv1-dev mips64el 1.50.0-2 [194 kB] Get:135 http://localhost:3142/debian unstable/main amd64 time amd64 1.9-0.2 [50.8 kB] Get:136 http://localhost:3142/debian unstable/main mips64el zlib1g-dev mips64el 1:1.3.dfsg+really1.3.1-1+b1 [914 kB] Preconfiguring packages ... Fetched 111 MB in 4s (26.8 MB/s) Selecting previously unselected package liblocale-gettext-perl. (Reading database ... 12871 files and directories currently installed.) Preparing to unpack .../000-liblocale-gettext-perl_1.07-7+b1_amd64.deb ... Unpacking liblocale-gettext-perl (1.07-7+b1) ... Selecting previously unselected package libncursesw6:amd64. Preparing to unpack .../001-libncursesw6_6.5+20250125-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250125-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../002-libproc2-0_2%3a4.0.4-7_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-7) ... Selecting previously unselected package procps. Preparing to unpack .../003-procps_2%3a4.0.4-7_amd64.deb ... Unpacking procps (2:4.0.4-7) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../004-sensible-utils_0.0.24_all.deb ... Unpacking sensible-utils (0.0.24) ... Selecting previously unselected package libmagic-mgc. 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Creating config file /etc/perl/XML/SAX/ParserDetails.ini with new version Setting up gcc-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up libxml-libxml-perl (2.0207+dfsg+really+2.0134-5+b2) ... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX::Parser with priority 50... update-perl-sax-parsers: Registering Perl SAX parser XML::LibXML::SAX with priority 50... update-perl-sax-parsers: Updating overall Perl SAX parser modules info file... Setting up g++-mips64el-linux-gnuabi64 (4:14.2.0-1) ... Setting up debhelper (13.24.1) ... Setting up libxml-simple-perl (2.25-2) ... Setting up libconfig-auto-perl (0.44-2) ... Setting up libdebian-dpkgcross-perl (2.6.20) ... Setting up dpkg-cross (2.6.20) ... Setting up crossbuild-essential-mips64el (12.9) ... Setting up libgcc-s1:mips64el (14.2.0-16) ... Setting up libc6:mips64el (2.40-6) ... Setting up libffi8:mips64el (3.4.6-1) ... Setting up libtasn1-6:mips64el (4.20.0-1) ... Setting up libmbedcrypto16:mips64el (3.6.2-3) ... Setting up libbz2-1.0:mips64el (1.0.8-6) ... Setting up libtasn1-6-dev:mips64el (4.20.0-1) ... Setting up libstdc++6:mips64el (14.2.0-16) ... Setting up liblmdb0:mips64el (0.9.31-1+b2) ... Setting up libzstd1:mips64el (1.5.6+dfsg-2) ... Setting up libsqlite3-0:mips64el (3.46.1-1) ... Setting up libuv1t64:mips64el (1.50.0-2) ... Setting up libnghttp2-14:mips64el (1.64.0-1) ... Setting up libevent-2.1-7t64:mips64el (2.1.12-stable-10+b1) ... Setting up zlib1g:mips64el (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libcrypt1:mips64el (1:4.4.38-1) ... Setting up libgomp1:mips64el (14.2.0-16) ... Setting up libpcre2-16-0:mips64el (10.45-1) ... Setting up libnettle8t64:mips64el (3.10-1+b1) ... Setting up libpcre2-32-0:mips64el (10.45-1) ... Setting up libmbedx509-7:mips64el (3.6.2-3) ... Setting up libgmp10:mips64el (2:6.3.0+dfsg-3) ... Setting up libp11-kit0:mips64el (0.25.5-3) ... Setting up libunistring5:mips64el (1.3-1) ... Setting up libatomic1:mips64el (14.2.0-16) ... Setting up libpcre2-8-0:mips64el (10.45-1) ... Setting up liblmdb-dev:mips64el (0.9.31-1+b2) ... Setting up libboost-test1.83.0:mips64el (1.83.0-4) ... Setting up libmbedtls21:mips64el (3.6.2-3) ... Setting up libpcre2-posix3:mips64el (10.45-1) ... Setting up libhogweed6t64:mips64el (3.10-1+b1) ... Setting up libcrypt-dev:mips64el (1:4.4.38-1) ... Setting up libc6-dev:mips64el (2.40-6) ... Setting up libgcc-14-dev:mips64el (14.2.0-16) ... Setting up libstdc++-14-dev:mips64el (14.2.0-16) ... Setting up libp11-kit-dev:mips64el (0.25.5-3) ... Setting up libbz2-dev:mips64el (1.0.8-6) ... Setting up libuv1-dev:mips64el (1.50.0-2) ... Setting up libnghttp2-dev:mips64el (1.64.0-1) ... Setting up libboost1.83-dev:mips64el (1.83.0-4) ... Setting up libpcre2-dev:mips64el (10.45-1) ... Setting up libssl3t64:mips64el (3.4.0-2) ... Setting up libboost-test1.83-dev:mips64el (1.83.0-4) ... Setting up libidn2-0:mips64el (2.3.7-2+b1) ... Setting up libmbedtls-dev:mips64el (3.6.2-3) ... Setting up libboost-test-dev:mips64el (1.83.0.2+b2) ... Setting up libunbound8:mips64el (1.22.0-1+b1) ... Setting up libgmpxx4ldbl:mips64el (2:6.3.0+dfsg-3) ... Setting up libsqlite3-dev:mips64el (3.46.1-1) ... Setting up libidn2-dev:mips64el (2.3.7-2+b1) ... Setting up zlib1g-dev:mips64el (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libgnutls30t64:mips64el (3.8.8-2) ... Setting up libgnutls-openssl27t64:mips64el (3.8.8-2) ... Setting up libgmp-dev:mips64el (2:6.3.0+dfsg-3) ... Setting up nettle-dev:mips64el (3.10-1+b1) ... Setting up libgnutls-dane0t64:mips64el (3.8.8-2) ... Setting up libgnutls28-dev:mips64el (3.8.8-2) ... Setting up sbuild-build-depends-main-dummy:mips64el (0.invalid.0) ... Processing triggers for libc-bin (2.40-6) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (mips64el included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-31-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) amd64 (x86_64) Toolchain package versions: binutils_2.44-1 dpkg-dev_1.22.15 g++-14_14.2.0-16 gcc-14_14.2.0-16 libc6-dev_2.40-6 libstdc++-14-dev_14.2.0-16 libstdc++-14-dev-mips64el-cross_14.2.0-13cross1 libstdc++6_14.2.0-16 libstdc++6-mips64el-cross_14.2.0-13cross1 linux-libc-dev_6.12.12-1 Package versions: apt_2.9.28 autoconf_2.72-3 autoconf2.69_2.69-3.1 automake_1:1.17-3 autopoint_0.23.1-1 autotools-dev_20220109.1 base-files_13.6 base-passwd_3.6.6 bash_5.2.37-1 binutils_2.44-1 binutils-common_2.44-1 binutils-mips64el-linux-gnuabi64_2.43.50.20241230-1cross1+nmu1 binutils-x86-64-linux-gnu_2.44-1 bsdextrautils_2.40.4-3 bsdutils_1:2.40.4-3 build-essential_12.12 bzip2_1.0.8-6 coreutils_9.5-1+b1 cpp_4:14.2.0-1 cpp-14_14.2.0-16 cpp-14-mips64el-linux-gnuabi64_14.2.0-13cross1 cpp-14-x86-64-linux-gnu_14.2.0-16 cpp-mips64el-linux-gnuabi64_4:14.2.0-1 cpp-x86-64-linux-gnu_4:14.2.0-1 cross-config_2.6.20 crossbuild-essential-mips64el_12.9 dash_0.5.12-12 debconf_1.5.89 debhelper_13.24.1 debian-archive-keyring_2023.4 debianutils_5.21 dh-autoreconf_20 dh-strip-nondeterminism_1.14.1-1 diffutils_1:3.10-2 dpkg_1.22.15 dpkg-cross_2.6.20 dpkg-dev_1.22.15 dwz_0.15-1+b1 e2fsprogs_1.47.2-1 fakeroot_1.37-1 file_1:5.45-3+b1 findutils_4.10.0-3 g++_4:14.2.0-1 g++-14_14.2.0-16 g++-14-mips64el-linux-gnuabi64_14.2.0-13cross1 g++-14-x86-64-linux-gnu_14.2.0-16 g++-mips64el-linux-gnuabi64_4:14.2.0-1 g++-x86-64-linux-gnu_4:14.2.0-1 gcc_4:14.2.0-1 gcc-14_14.2.0-16 gcc-14-base_14.2.0-16 gcc-14-cross-base-mipsen_14.2.0-13cross1 gcc-14-mips64el-linux-gnuabi64_14.2.0-13cross1 gcc-14-mips64el-linux-gnuabi64-base_14.2.0-13cross1 gcc-14-x86-64-linux-gnu_14.2.0-16 gcc-mips64el-linux-gnuabi64_4:14.2.0-1 gcc-x86-64-linux-gnu_4:14.2.0-1 gettext_0.23.1-1 gettext-base_0.23.1-1 grep_3.11-4 groff-base_1.23.0-7 gzip_1.13-1 hostname_3.25 init-system-helpers_1.68 intltool-debian_0.35.0+20060710.6 libacl1_2.3.2-2+b1 libapt-pkg6.0t64_2.9.28 libarchive-zip-perl_1.68-1 libasan8_14.2.0-16 libatomic1_14.2.0-16 libatomic1-mips64el-cross_14.2.0-13cross1 libattr1_1:2.5.2-2 libaudit-common_1:4.0.2-2 libaudit1_1:4.0.2-2+b1 libbinutils_2.44-1 libblkid1_2.40.4-3 libboost-test-dev_1.83.0.2+b2 libboost-test1.83-dev_1.83.0-4 libboost-test1.83.0_1.83.0-4 libboost1.83-dev_1.83.0-4 libbsd0_0.12.2-2 libbz2-1.0_1.0.8-6 libbz2-dev_1.0.8-6 libc-bin_2.40-6 libc-dev-bin_2.40-6 libc6_2.40-6 libc6-dev_2.40-6 libc6-dev-mips64el-cross_2.40-5cross1 libc6-mips64el-cross_2.40-5cross1 libcap-ng0_0.8.5-4 libcap2_1:2.66-5+b1 libcc1-0_14.2.0-16 libcom-err2_1.47.2-1 libconfig-auto-perl_0.44-2 libconfig-inifiles-perl_3.000003-3 libcrypt-dev_1:4.4.38-1 libcrypt1_1:4.4.38-1 libctf-nobfd0_2.44-1 libctf0_2.44-1 libdb5.3t64_5.3.28+dfsg2-9 libdebconfclient0_0.277 libdebhelper-perl_13.24.1 libdebian-dpkgcross-perl_2.6.20 libdpkg-perl_1.22.15 libelf1t64_0.192-4 libevent-2.1-7t64_2.1.12-stable-10+b1 libext2fs2t64_1.47.2-1 libfakeroot_1.37-1 libffi8_3.4.6-1 libfile-homedir-perl_1.006-2 libfile-stripnondeterminism-perl_1.14.1-1 libfile-which-perl_1.27-2 libgcc-14-dev_14.2.0-16 libgcc-14-dev-mips64el-cross_14.2.0-13cross1 libgcc-s1_14.2.0-16 libgcc-s1-mips64el-cross_14.2.0-13cross1 libgdbm-compat4t64_1.24-2 libgdbm6t64_1.24-2 libgmp-dev_2:6.3.0+dfsg-3 libgmp10_2:6.3.0+dfsg-3 libgmpxx4ldbl_2:6.3.0+dfsg-3 libgnutls-dane0t64_3.8.8-2 libgnutls-openssl27t64_3.8.8-2 libgnutls28-dev_3.8.8-2 libgnutls30t64_3.8.8-2 libgomp1_14.2.0-16 libgomp1-mips64el-cross_14.2.0-13cross1 libgprofng0_2.44-1 libhogweed6t64_3.10-1+b1 libhwasan0_14.2.0-16 libicu72_72.1-6 libidn2-0_2.3.7-2+b1 libidn2-dev_2.3.7-2+b1 libio-string-perl_1.08-4 libisl23_0.27-1 libitm1_14.2.0-16 libjansson4_2.14-2+b3 liblmdb-dev_0.9.31-1+b2 liblmdb0_0.9.31-1+b2 liblocale-gettext-perl_1.07-7+b1 liblsan0_14.2.0-16 liblz4-1_1.10.0-3 liblzma5_5.6.3-1+b1 libmagic-mgc_1:5.45-3+b1 libmagic1t64_1:5.45-3+b1 libmbedcrypto16_3.6.2-3 libmbedtls-dev_3.6.2-3 libmbedtls21_3.6.2-3 libmbedx509-7_3.6.2-3 libmd0_1.1.0-2+b1 libmount1_2.40.4-3 libmpc3_1.3.1-1+b3 libmpfr6_4.2.1-1+b2 libncursesw6_6.5+20250125-2 libnettle8t64_3.10-1+b1 libnghttp2-14_1.64.0-1 libnghttp2-dev_1.64.0-1 libp11-kit-dev_0.25.5-3 libp11-kit0_0.25.5-3 libpam-modules_1.7.0-2 libpam-modules-bin_1.7.0-2 libpam-runtime_1.7.0-2 libpam0g_1.7.0-2 libpcre2-16-0_10.45-1 libpcre2-32-0_10.45-1 libpcre2-8-0_10.45-1 libpcre2-dev_10.45-1 libpcre2-posix3_10.45-1 libperl5.40_5.40.0-8 libpipeline1_1.5.8-1 libpkgconf3_1.8.1-4 libproc2-0_2:4.0.4-7 libquadmath0_14.2.0-16 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-----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ncbi-blast+ Binary: ncbi-blast+, ncbi-blast+-legacy Architecture: any all Version: 2.16.0+ds-6 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Aaron M. Ucko Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Standards-Version: 4.7.0 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), autoconf2.69 Build-Depends-Arch: libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps Package-List: ncbi-blast+ deb science optional arch=any ncbi-blast+-legacy deb science optional arch=all Checksums-Sha1: 1dfe116e602e0eafe0cfbc68c164549c6420c8f7 18407664 ncbi-blast+_2.16.0+ds.orig.tar.xz 499006a13b731f3e5e72c59a3d6e6ba1f547a742 40736 ncbi-blast+_2.16.0+ds-6.debian.tar.xz Checksums-Sha256: b98c86118edd2c4a048303caaed70b6debb11dd4372e83795b397cd193fcaf42 18407664 ncbi-blast+_2.16.0+ds.orig.tar.xz 8d08764e2f4412ccd37ec733660b8717a809cc6c247d099b83cfb8f1b0d3838a 40736 ncbi-blast+_2.16.0+ds-6.debian.tar.xz Files: e00a1576df10271e9ac076d7de108462 18407664 ncbi-blast+_2.16.0+ds.orig.tar.xz 11d0b3f200a91ef5eaa4bbf79542f5eb 40736 ncbi-blast+_2.16.0+ds-6.debian.tar.xz Dgit: c03756fe5d9687920974d4524c1fb2a83a4ba2e0 debian archive/debian/2.16.0+ds-6 https://git.dgit.debian.org/ncbi-blast+ -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmay0k4ACgkQHnCRsfFK ZKI71xAAj6CkZ6Wzpy+YeKf4jaGMuOWu5Ye/lj5JvRmRLc2QNKYIAFzzyCCTH/zk sskOH60CVUGs72E/dFS/xBRy6C9GVkbuIuE2DqUqQWDCF1LI3dIIiNVvdWvQdei4 t4fyrqoSZ4G9dPg2UHfdLj4P4xe9Y8ZbMUiOm7pB+3hTqj40U0ebCOnjLFb1drtF eHk49N7wwbvKHvtakCri85gDbDX/q/qFT2PJhmjZvciaZy6W5S9E3iGV6gFUZFfd Ektjg8dMC6CPirfW9+VClmYT+86YVZm1kelmgb2CgPL1HHaJJa5w+WW3Vhn3+ev0 Npk0VUU2BNMUSVgJiLk74t8XJeoQMgo7rOhobCJTHFSE52UC8wv17gsmuSoKdDzD aHcFIylCxkP3wftTpUfKDDAoWhZoRCWslVRm1zpDYdq4Ej6661ToJiT4dq82K2TM XrR8aP1KxsRrVDNdrvsa/0R03FSf3lSF2+yVVI5MBAtcvrAAMDj86DXW+O+zq/C5 ZPkO3GGRIkOsrQgXpCof9SDSFZgC97ZkziPLRPOZtNVvUGZDDBn6iElKHbqLmFnR 69qTbxTaeaJTLWp23k8FCZ6fn36SjBVPGXb3rO96OawQNWNu8sOoqAhBzZ9xWHPM j1eNnyqeMC7rCb4vZc7CbwL3HnLgmywhS4o8upQvMF7l09rL4/M= =RHaD -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./ncbi-blast+_2.16.0+ds-6.dsc: unsupported subcommand dpkg-source: info: extracting ncbi-blast+ in /<> dpkg-source: info: unpacking ncbi-blast+_2.16.0+ds.orig.tar.xz dpkg-source: info: unpacking ncbi-blast+_2.16.0+ds-6.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying system_mbedtls_only dpkg-source: info: applying support_mbedtls3 dpkg-source: info: applying allow_pcre2 dpkg-source: info: applying optin_usage_report dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_tls_version_checks dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying spelling dpkg-source: info: applying support_gcc10 dpkg-source: info: applying run_perl_directly dpkg-source: info: applying tune_lmdb_defaults dpkg-source: info: applying 2to3 dpkg-source: info: applying big_endian_workaround Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.mips64el DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.a8obRiadah/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-963fa5e5-b00e-443e-a005-9ed42c4c7def SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -amips64el -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.16.0+ds-6 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type mips64el-linux-gnuabi64 does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture mips64el dpkg-source: info: using options from ncbi-blast+-2.16.0+ds/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean --sourcedirectory=c++ --with-autoreconf dh_auto_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf dh_autoreconf_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf debian/rules override_dh_clean make[1]: Entering directory '/<>' cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ /<>/c++/BUILD.native/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:178: override_dh_clean] Error 127 (ignored) for x in c++/src/objtools/eutils/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ /<>/c++/BUILD.native/build/new_module.sh --dtd $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/Makefile.in /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:179: override_dh_clean] Error 127 (ignored) cd c++/src/objtools/eutils/efetch && \ /<>/c++/BUILD.native/build/new_module.sh --xsd efetch purge_sources /bin/sh: 2: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:180: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module rm -f c++/include/common/ncbi_revision.h find -name check_exec.pid -delete rm -rf c++/BUILD c++/BUILD.native fakehome mv configure.orig.save c++/configure.orig mv c++/src/util/lmdb/Makefile.orig.save c++/src/util/lmdb/Makefile.orig mv c++/src/util/lmdbxx/Makefile.orig.save c++/src/util/lmdbxx/Makefile.orig mv c++/src/util/lmdbxx/lmdb++.h.orig.save c++/src/util/lmdbxx/lmdb++.h.orig make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=c++ --with-autoreconf dh_update_autotools_config -a -O--sourcedirectory=c\+\+ -O--with-autoreconf debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cd c++ && \ autoheader2.69 -Isrc/build-system src/build-system/configure.ac \ && cd src/build-system && autoconf2.69 src/build-system/configure.ac:10350: warning: *** Please don't forget to update .../src/build-system/NEWS if appropriate! *** configure.ac:10350: warning: *** Please don't forget to update .../src/build-system/NEWS if appropriate! *** make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' cd c++ && PREBUILT_PTB_EXE=bootstrap \ ./configure --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-downloaded-vdb --without-sse42 CFLAGS_FOR_BUILD="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -mxgot -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now" --without-objects \ --without-algo --without-app --with-build-root=BUILD.native || \ (tail -v -n +0 config.log BUILD.native/status/config.log; exit 1) configure: WARNING: unrecognized options: --without-dbapi, --without-objects, --without-algo configure: loading site script /etc/dpkg-cross/cross-config.mips64el configure: creating cache config.cache configure: WARNING: --with(out)-objects is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-algo is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking VCS revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking whether the C compiler works... no configure: error: in `/<>/c++': configure: error: C compiler cannot create executables See `config.log' for more details ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ncbi-tools++ configure 0.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ /<>/c++/src/build-system/configure --srcdir=/<>/c++ --without-debug --with-strip --with-openmp --with-mt --without-vdb --without-gnutls --without-gcrypt --with-build-root=./ReleaseMT --with-experimental=Int8GI --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-downloaded-vdb --without-sse42 CFLAGS_FOR_BUILD=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -mxgot -fPIE LDFLAGS_FOR_BUILD=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now --without-objects --without-algo --without-app --with-build-root=BUILD.native ## --------- ## ## Platform. ## ## --------- ## hostname = debian-ci-siliconvalley uname -m = x86_64 uname -r = 6.1.0-31-amd64 uname -s = Linux uname -v = #1 SMP PREEMPT_DYNAMIC Debian 6.1.128-1 (2025-02-07) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:4383: loading site script /etc/dpkg-cross/cross-config.mips64el | . `dirname $ac_site_file`/cross-config.cache configure:4406: creating cache config.cache configure:6318: WARNING: --with(out)-objects is deprecated configure:6320: WARNING: please simply pass an appropriate project list configure:6324: WARNING: --with(out)-dbapi is deprecated configure:6326: WARNING: please simply pass an appropriate project list configure:6330: WARNING: --with(out)-algo is deprecated configure:6332: WARNING: please simply pass an appropriate project list configure:6462: checking TeamCity build number configure:6473: result: none configure:6478: checking VCS revision configure:6500: result: unknown configure:6512: checking NCBI stable components' version configure:6524: result: unknown configure:6567: checking build system type configure:6581: result: x86_64-pc-linux-gnu configure:6601: checking host system type configure:6614: result: x86_64-pc-linux-gnu configure:6671: checking for a BSD-compatible install configure:6739: result: /usr/bin/install -c configure:6938: checking for gcc configure:6954: found /usr/bin/gcc configure:6965: result: gcc configure:7194: checking for C compiler version configure:7203: gcc --version >&5 gcc (Debian 14.2.0-16) 14.2.0 Copyright (C) 2024 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7214: $? = 0 configure:7203: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/14/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 14.2.0-16' --with-bugurl=file:///usr/share/doc/gcc-14/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust --prefix=/usr --with-gcc-major-version-only --program-suffix=-14 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-14-14.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 14.2.0 (Debian 14.2.0-16) ... rest of stderr output deleted ... configure:7214: $? = 0 configure:7203: gcc -V >&5 gcc: error: unrecognized command-line option '-V' gcc: fatal error: no input files compilation terminated. configure:7214: $? = 1 configure:7203: gcc -qversion >&5 gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:7214: $? = 1 configure:7234: checking whether the C compiler works configure:7256: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -mxgot -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now conftest.c >&5 gcc: error: unrecognized command-line option '-mxgot' configure:7260: $? = 1 configure:7298: result: no configure: failed program was: | /* confdefs.h */ | #define NCBI_INT8_GI 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7303: error: in `/<>/c++': configure:7305: error: C compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -Wall -pedantic -mxgot' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-D_FORTIFY_SOURCE=2 ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -Wformat -Werror=format-security -mxgot -mxgot' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_func_malloc_0_nonnull=yes ac_cv_func_realloc_0_nonnull=yes ac_cv_func_setpgrp_void=yes ac_cv_host=x86_64-pc-linux-gnu ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_ac_ct_CC=gcc lt_cv_sys_lib_dlsearch_path_spec=' /lib/mips64el-linux-gnuabi64 /usr/lib/mips64el-linux-gnuabi64 /lib /usr/lib /usr/local/lib' xorg_cv_malloc0_returns_null=no ## ----------------- ## ## Output variables. ## ## ----------------- ## AES_FLAG='' ALLOW_UNDEF='' AMQ='' APACHE_ARROW_INCLUDE='' APACHE_ARROW_LIBS='' APACHE_ARROW_STATIC_LIBS='' APP_LDFLAGS='' APP_LIBS_SETTING='' APP_LIB_SETTING='' APP_NOCOPY='' APP_OR_NULL='' AR='' AR_FILTER='' AR_WRAPPER='' AS_NEEDED='' AVROGENCPP='' AVRO_INCLUDE='' AVRO_LIBS='' AVRO_STATIC_LIBS='' AWK='' AWS_SDK_INCLUDE='' AWS_SDK_LIBS='' AWS_SDK_STATIC_LIBS='' BACKWARD_CPP_INCLUDE='' 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UNIX_USR_PROJ='' UNLESS_PUBSEQOS='' UNLESS_WITH_DLL='' UNSAFE_MATH_FLAG='' USUAL_AND_DLL='' USUAL_AND_LIB='' UUIDGEN='' UUID_LIBS='' VALGRIND_PATH='' VDB_INCLUDE='' VDB_LIBS='' VDB_POST_LINK='' VDB_REQ='' VDB_STATIC_LIBS='' WHOLE_ARCHIVE='' WXWIDGETS_GL_LIBS='' WXWIDGETS_GL_STATIC_LIBS='' WXWIDGETS_INCLUDE='' WXWIDGETS_LIBS='' WXWIDGETS_POST_LINK='' WXWIDGETS_STATIC_LIBS='' XALAN_INCLUDE='' XALAN_LIBS='' XALAN_STATIC_LIBS='' XCONNEXT='' XERCES_INCLUDE='' XERCES_LIBS='' XERCES_STATIC_LIBS='' XMKMF='' XPM_INCLUDE='' XPM_LIBS='' XSLTPROC='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' YAML_CPP_INCLUDE='' YAML_CPP_LIBS='' YAML_CPP_STATIC_LIBS='' ZORBA_INCLUDE='' ZORBA_LIBS='' ZORBA_STATIC_LIBS='' ZSTD_INCLUDE='' ZSTD_LIBS='' ZSTD_STATIC_LIBS='' Z_INCLUDE='' Z_LIB='' Z_LIBS='' _ACJNI_JAVAC='' ac_ct_CC='gcc' ac_ct_CC_FOR_BUILD='' ac_ct_CXX='' algo='' app='' bamread='' bdb='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_root='' build_vendor='pc' builddir='' c_ncbi_runpath='' check='' compiler='' compiler_root='' compiler_version='' configurables_mfname='' datadir='${datarootdir}' datarootdir='${prefix}/share' dbapi='' dll_ext='' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exe_ext='' exec_prefix='NONE' f_compile='' f_libpath='' f_outexe='' f_outlib='' f_outobj='' f_runpath='' freetds='' freetype_config='' gui='' has_dll_loadable='' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' ifGNUmake='' includedir='${prefix}/include' infodir='${datarootdir}/info' internal='' lib_ext='' lib_l_ext='' lib_l_pre='' lib_pre='' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' loadable_ext='' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' make_shell='' mandir='${datarootdir}/man' mysql_config='' ncbi_id2proc_snp='' ncbi_id2proc_wgs='' ncbi_java='' ncbi_runpath='' ncbi_xloader_bam='' ncbi_xloader_csra='' ncbi_xloader_snp='' ncbi_xloader_sra='' ncbi_xloader_vdbgraph='' ncbi_xloader_wgs='' ncbi_xreader_pubseqos2='' ncbi_xreader_pubseqos='' ncbicntr='' obj_ext='' objects='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' runpath='' sbindir='${exec_prefix}/sbin' script_shell='' serial='' serial_ws50_rtti_kludge='' sharedstatedir='${prefix}/com' signature='' sraread='' srcdir='.' sssutils='' status_dir='' sysconfdir='${prefix}/etc' target_alias='' top_srcdir='' wxconf='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define NCBI_INT8_GI 1 #define NCBI_CXX_TOOLKIT 1 #define HAVE_COMMON_NCBI_BUILD_VER_H 1 #define HOST "x86_64-pc-linux-gnu" #define HOST_CPU "x86_64" #define HOST_VENDOR "pc" #define HOST_OS "linux-gnu" configure: exit 77 tail: cannot open 'BUILD.native/status/config.log' for reading: No such file or directory make[1]: *** [debian/rules:81: /<>/c++/BUILD.native/bin/datatool] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:210: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-02-09T08:25:01Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 7 Distribution: unstable Fail-Stage: build Foreign Architectures: mips64el Host Architecture: mips64el Install-Time: 16 Job: ncbi-blast+_2.16.0+ds-6 Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 33 Source-Version: 2.16.0+ds-6 Space: n/a Status: attempted Version: 2.16.0+ds-6 -------------------------------------------------------------------------------- Finished at 2025-02-09T08:25:01Z Build needed 00:00:33, no disk space