sbuild (Debian sbuild) 0.85.0 (04 January 2023) on debian-ci-siliconvalley +==============================================================================+ | ncbi-blast+ 2.17.0+ds-1 (arm64) Tue, 30 Sep 2025 15:57:39 +0000 | +==============================================================================+ Package: ncbi-blast+ Version: 2.17.0+ds-1 Source Version: 2.17.0+ds-1 Distribution: unstable Machine Architecture: amd64 Host Architecture: arm64 Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any I: NOTICE: Log filtering will replace 'var/run/schroot/mount/sid-amd64-sbuild-2eb78da7-b685-4460-8cd5-19063878b4d2' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-JAbFgH/resolver-wGufKQ' with '<>' +------------------------------------------------------------------------------+ | Update chroot | +------------------------------------------------------------------------------+ Get:1 http://localhost:3142/debian unstable InRelease [207 kB] Get:2 http://localhost:3142/debian unstable/main Sources.diff/Index [63.6 kB] Get:3 http://localhost:3142/debian unstable/non-free Sources.diff/Index [63.3 kB] Get:4 http://localhost:3142/debian unstable/contrib Sources.diff/Index [63.3 kB] Get:5 http://localhost:3142/debian unstable/main amd64 Packages.diff/Index [63.6 kB] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [62.3 kB] Get:7 http://localhost:3142/debian unstable/non-free Sources T-2025-09-30-1406.36-F-2025-09-30-1406.36.pdiff [722 B] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [1019 B] Get:6 http://localhost:3142/debian unstable/main Sources T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [62.3 kB] Get:8 http://localhost:3142/debian unstable/contrib Sources T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [1019 B] Get:7 http://localhost:3142/debian unstable/non-free Sources T-2025-09-30-1406.36-F-2025-09-30-1406.36.pdiff [722 B] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [57.1 kB] Get:9 http://localhost:3142/debian unstable/main amd64 Packages T-2025-09-30-1406.36-F-2025-09-30-0205.49.pdiff [57.1 kB] Get:10 http://localhost:3142/debian unstable/main arm64 Packages [10.1 MB] Fetched 10.7 MB in 3s (3815 kB/s) Reading package lists... Reading package lists... Building dependency tree... Reading state information... Calculating upgrade... 0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded. +------------------------------------------------------------------------------+ | Fetch source files | +------------------------------------------------------------------------------+ Check APT --------- Checking available source versions... Download source files with APT ------------------------------ Reading package lists... NOTICE: 'ncbi-blast+' packaging is maintained in the 'Git' version control system at: https://salsa.debian.org/med-team/ncbi-blastplus.git Please use: git clone https://salsa.debian.org/med-team/ncbi-blastplus.git to retrieve the latest (possibly unreleased) updates to the package. Need to get 19.2 MB of source archives. Get:1 http://localhost:3142/debian unstable/main ncbi-blast+ 2.17.0+ds-1 (dsc) [2534 B] Get:2 http://localhost:3142/debian unstable/main ncbi-blast+ 2.17.0+ds-1 (tar) [19.2 MB] Get:3 http://localhost:3142/debian unstable/main ncbi-blast+ 2.17.0+ds-1 (diff) [43.3 kB] Fetched 19.2 MB in 2s (9434 kB/s) Download complete and in download only mode I: NOTICE: Log filtering will replace 'build/ncbi-blast+-JAbFgH/ncbi-blast+-2.17.0+ds' with '<>' I: NOTICE: Log filtering will replace 'build/ncbi-blast+-JAbFgH' with '<>' +------------------------------------------------------------------------------+ | Install package build dependencies | +------------------------------------------------------------------------------+ Setup apt archive ----------------- Merged Build-Depends: debhelper-compat (= 13), autoconf2.69, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libncbi-vdb-dev, libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps Filtered Build-Depends: debhelper-compat (= 13), autoconf2.69, libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-arm64:amd64, libc-dev:arm64, libstdc++-dev:arm64, libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libncbi-vdb-dev, libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps dpkg-deb: warning: root directory /<>/sbuild-build-depends-main-dummy has unusual owner or group 1000:119 dpkg-deb: hint: you might need to pass --root-owner-group, see for further details dpkg-deb: warning: ignoring 1 warning about the control file(s) dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<>/apt_archive/sbuild-build-depends-main-dummy.deb'. Ign:1 copy:/<>/apt_archive ./ InRelease Get:2 copy:/<>/apt_archive ./ Release [609 B] Ign:3 copy:/<>/apt_archive ./ Release.gpg Get:4 copy:/<>/apt_archive ./ Sources [957 B] Get:5 copy:/<>/apt_archive ./ Packages [964 B] Fetched 2530 B in 0s (0 B/s) Reading package lists... Reading package lists... Install main build dependencies (apt-based resolver) ---------------------------------------------------- Installing build dependencies Reading package lists... Building dependency tree... Reading state information... Execute external solver... The following additional packages will be installed: autoconf autoconf2.69 automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-base:arm64 gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-test-dev:arm64 libboost-test1.83-dev:arm64 libboost-test1.83.0:arm64 libboost1.83-dev:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libelf1t64 libevent-2.1-7t64:arm64 libfakeroot libffi8:arm64 libfile-stripnondeterminism-perl libgcc-14-dev:arm64 libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libhogweed6t64:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross liblmdb-dev:arm64 liblmdb0:arm64 liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1t64 libmbedcrypto16:arm64 libmbedtls-dev:arm64 libmbedtls21:arm64 libmbedx509-7:arm64 libncbi-vdb-dev:arm64 libncbi-vdb3:arm64 libncbi-wvdb-dev:arm64 libncbi-wvdb3:arm64 libncursesw6 libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix3:arm64 libpipeline1 libpkgconf3 libproc2-0 libsqlite3-0:arm64 libsqlite3-dev:arm64 libssl3t64:arm64 libstdc++-14-dev:arm64 libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsz2:arm64 libtasn1-6:arm64 libtasn1-6-dev:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring5 libunistring5:arm64 libuv1-dev:arm64 libuv1t64:arm64 libxml2-16 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db ncbi-vdb-data nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf procps sensible-utils time zlib1g:arm64 zlib1g-dev:arm64 Suggested packages: autoconf-archive gnu-standards autoconf-doc binutils-doc gcc-15-locales cpp-15-doc cpp-doc dh-make gcc-15-doc manpages-dev flex bison gdb-aarch64-linux-gnu gcc-doc gettext-doc libasprintf-dev libgettextpo-dev gnulib-l10n groff libboost1.83-doc:arm64 libboost-atomic1.83-dev:arm64 libboost-chrono1.83-dev:arm64 libboost-container1.83-dev:arm64 libboost-context1.83-dev:arm64 libboost-contract1.83-dev:arm64 libboost-coroutine1.83-dev:arm64 libboost-date-time1.83-dev:arm64 libboost-exception1.83-dev:arm64 libboost-fiber1.83-dev:arm64 libboost-filesystem1.83-dev:arm64 libboost-graph-parallel1.83-dev:arm64 libboost-graph1.83-dev:arm64 libboost-iostreams1.83-dev:arm64 libboost-json1.83-dev:arm64 libboost-locale1.83-dev:arm64 libboost-log1.83-dev:arm64 libboost-math1.83-dev:arm64 libboost-mpi-python1.83-dev:arm64 libboost-mpi1.83-dev:arm64 libboost-nowide1.83-dev:arm64 libboost-numpy1.83-dev:arm64 libboost-program-options1.83-dev:arm64 libboost-python1.83-dev:arm64 libboost-random1.83-dev:arm64 libboost-regex1.83-dev:arm64 libboost-serialization1.83-dev:arm64 libboost-stacktrace1.83-dev:arm64 libboost-system1.83-dev:arm64 libboost-thread1.83-dev:arm64 libboost-timer1.83-dev:arm64 libboost-type-erasure1.83-dev:arm64 libboost-url1.83-dev:arm64 libboost-wave1.83-dev:arm64 libboost1.83-tools-dev:arm64 libmpfrc++-dev:arm64 libntl-dev:arm64 glibc-doc:arm64 libc-l10n:arm64 locales:arm64 libnss-nis:arm64 libnss-nisplus:arm64 manpages-dev:arm64 gmp-doc:arm64 libgmp10-doc:arm64 libmpfr-dev:arm64 dns-root-data:arm64 gnutls-bin:arm64 gnutls-doc:arm64 libmbedtls-doc:arm64 libnghttp2-doc:arm64 p11-kit-doc:arm64 sqlite3-doc:arm64 libstdc++-14-doc:arm64 libstdc++-15-doc:arm64 libtool-doc gfortran | fortran95-compiler libuv1-doc:arm64 m4-doc apparmor less www-browser libmail-box-perl Recommended packages: curl | wget | lynx bzip2-doc:arm64 libarchive-cpio-perl lmdb-doc:arm64 libgpm2 libtasn1-doc:arm64 libltdl-dev python3:any libmail-sendmail-perl psmisc linux-sysctl-defaults The following NEW packages will be installed: autoconf autoconf2.69 automake autopoint autotools-dev binutils-aarch64-linux-gnu bsdextrautils cpp-15-aarch64-linux-gnu cpp-aarch64-linux-gnu crossbuild-essential-arm64 debhelper dh-autoreconf dh-strip-nondeterminism dwz fakeroot file g++-15-aarch64-linux-gnu g++-aarch64-linux-gnu gcc-14-base:arm64 gcc-15-aarch64-linux-gnu gcc-15-aarch64-linux-gnu-base gcc-15-base:arm64 gcc-15-cross-base gcc-aarch64-linux-gnu gettext gettext-base groff-base intltool-debian libaec-dev:arm64 libaec0:arm64 libarchive-zip-perl libasan8:arm64 libasan8-arm64-cross libatomic1:arm64 libatomic1-arm64-cross libboost-test-dev:arm64 libboost-test1.83-dev:arm64 libboost-test1.83.0:arm64 libboost1.83-dev:arm64 libbz2-1.0:arm64 libbz2-dev:arm64 libc6:arm64 libc6-arm64-cross libc6-dev:arm64 libc6-dev-arm64-cross libcrypt-dev:arm64 libcrypt1:arm64 libdebhelper-perl libelf1t64 libevent-2.1-7t64:arm64 libfakeroot libffi8:arm64 libfile-stripnondeterminism-perl libgcc-14-dev:arm64 libgcc-15-dev:arm64 libgcc-15-dev-arm64-cross libgcc-s1:arm64 libgcc-s1-arm64-cross libgmp-dev:arm64 libgmp10:arm64 libgmpxx4ldbl:arm64 libgnutls-dane0t64:arm64 libgnutls-openssl27t64:arm64 libgnutls28-dev:arm64 libgnutls30t64:arm64 libgomp1:arm64 libgomp1-arm64-cross libhogweed6t64:arm64 libhwasan0:arm64 libhwasan0-arm64-cross libidn2-0:arm64 libidn2-dev:arm64 libitm1:arm64 libitm1-arm64-cross liblmdb-dev:arm64 liblmdb0:arm64 liblsan0:arm64 liblsan0-arm64-cross libmagic-mgc libmagic1t64 libmbedcrypto16:arm64 libmbedtls-dev:arm64 libmbedtls21:arm64 libmbedx509-7:arm64 libncbi-vdb-dev:arm64 libncbi-vdb3:arm64 libncbi-wvdb-dev:arm64 libncbi-wvdb3:arm64 libncursesw6 libnettle8t64:arm64 libnghttp2-14:arm64 libnghttp2-dev:arm64 libp11-kit-dev:arm64 libp11-kit0:arm64 libpcre2-16-0:arm64 libpcre2-32-0:arm64 libpcre2-8-0:arm64 libpcre2-dev:arm64 libpcre2-posix3:arm64 libpipeline1 libpkgconf3 libproc2-0 libsqlite3-0:arm64 libsqlite3-dev:arm64 libssl3t64:arm64 libstdc++-14-dev:arm64 libstdc++-15-dev:arm64 libstdc++-15-dev-arm64-cross libstdc++6:arm64 libstdc++6-arm64-cross libsz2:arm64 libtasn1-6:arm64 libtasn1-6-dev:arm64 libtool libtsan2:arm64 libtsan2-arm64-cross libubsan1:arm64 libubsan1-arm64-cross libuchardet0 libunbound8:arm64 libunistring5 libunistring5:arm64 libuv1-dev:arm64 libuv1t64:arm64 libxml2-16 libzstd-dev:arm64 libzstd1:arm64 linux-libc-dev-arm64-cross m4 man-db ncbi-vdb-data nettle-dev:arm64 pkgconf:arm64 pkgconf-bin po-debconf procps sbuild-build-depends-main-dummy:arm64 sensible-utils time zlib1g:arm64 zlib1g-dev:arm64 0 upgraded, 141 newly installed, 0 to remove and 0 not upgraded. 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unstable/main amd64 libc6-dev-arm64-cross all 2.41-11cross1 [1617 kB] Get:42 http://localhost:3142/debian unstable/main amd64 libstdc++-15-dev-arm64-cross all 15.2.0-4cross1 [2697 kB] Get:43 http://localhost:3142/debian unstable/main amd64 g++-15-aarch64-linux-gnu amd64 15.2.0-4cross1 [96.2 MB] Get:44 http://localhost:3142/debian unstable/main amd64 g++-aarch64-linux-gnu amd64 4:15.2.0-4 [1200 B] Get:45 http://localhost:3142/debian unstable/main amd64 crossbuild-essential-arm64 all 12.12 [3548 B] Get:46 http://localhost:3142/debian unstable/main amd64 libdebhelper-perl all 13.28 [92.4 kB] Get:47 http://localhost:3142/debian unstable/main amd64 libtool all 2.5.4-5 [540 kB] Get:48 http://localhost:3142/debian unstable/main amd64 dh-autoreconf all 21 [12.2 kB] Get:49 http://localhost:3142/debian unstable/main amd64 libarchive-zip-perl all 1.68-1 [104 kB] Get:50 http://localhost:3142/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.15.0-1 [19.9 kB] Get:51 http://localhost:3142/debian unstable/main amd64 dh-strip-nondeterminism all 1.15.0-1 [8812 B] Get:52 http://localhost:3142/debian unstable/main amd64 libelf1t64 amd64 0.193-3 [192 kB] Get:53 http://localhost:3142/debian unstable/main amd64 dwz amd64 0.16-2 [108 kB] Get:54 http://localhost:3142/debian unstable/main amd64 libunistring5 amd64 1.3-2 [477 kB] Get:55 http://localhost:3142/debian unstable/main amd64 libxml2-16 amd64 2.14.5+dfsg-0.2 [638 kB] Get:56 http://localhost:3142/debian unstable/main amd64 gettext amd64 0.23.1-2+b1 [1680 kB] Get:57 http://localhost:3142/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.6 [22.9 kB] Get:58 http://localhost:3142/debian unstable/main amd64 po-debconf all 1.0.21+nmu1 [248 kB] Get:59 http://localhost:3142/debian unstable/main amd64 debhelper all 13.28 [941 kB] Get:60 http://localhost:3142/debian unstable/main amd64 libfakeroot amd64 1.37.1.2-1 [29.7 kB] Get:61 http://localhost:3142/debian unstable/main amd64 fakeroot amd64 1.37.1.2-1 [76.0 kB] Get:62 http://localhost:3142/debian unstable/main arm64 gcc-14-base arm64 14.3.0-8 [52.1 kB] Get:63 http://localhost:3142/debian unstable/main arm64 gcc-15-base arm64 15.2.0-4 [52.8 kB] Get:64 http://localhost:3142/debian unstable/main arm64 libgcc-s1 arm64 15.2.0-4 [53.5 kB] Get:65 http://localhost:3142/debian unstable/main arm64 libc6 arm64 2.41-12 [2489 kB] Get:66 http://localhost:3142/debian unstable/main arm64 libaec0 arm64 1.1.4-2 [22.6 kB] Get:67 http://localhost:3142/debian unstable/main arm64 libsz2 arm64 1.1.4-2 [8072 B] Get:68 http://localhost:3142/debian unstable/main arm64 libaec-dev arm64 1.1.4-2 [20.3 kB] Get:69 http://localhost:3142/debian unstable/main arm64 libasan8 arm64 15.2.0-4 [2600 kB] Get:70 http://localhost:3142/debian unstable/main arm64 libatomic1 arm64 15.2.0-4 [9940 B] Get:71 http://localhost:3142/debian unstable/main arm64 libgomp1 arm64 15.2.0-4 [127 kB] Get:72 http://localhost:3142/debian unstable/main arm64 libitm1 arm64 15.2.0-4 [24.2 kB] Get:73 http://localhost:3142/debian unstable/main arm64 liblsan0 arm64 15.2.0-4 [1194 kB] Get:74 http://localhost:3142/debian unstable/main arm64 libtsan2 arm64 15.2.0-4 [2400 kB] Get:75 http://localhost:3142/debian unstable/main arm64 libstdc++6 arm64 15.2.0-4 [647 kB] Get:76 http://localhost:3142/debian unstable/main arm64 libubsan1 arm64 15.2.0-4 [1064 kB] Get:77 http://localhost:3142/debian unstable/main arm64 libhwasan0 arm64 15.2.0-4 [1480 kB] Get:78 http://localhost:3142/debian unstable/main arm64 libgcc-14-dev arm64 14.3.0-8 [2364 kB] Get:79 http://localhost:3142/debian unstable/main arm64 libcrypt1 arm64 1:4.4.38-1 [91.8 kB] Get:80 http://localhost:3142/debian unstable/main arm64 libcrypt-dev arm64 1:4.4.38-1 [123 kB] Get:81 http://localhost:3142/debian unstable/main arm64 libc6-dev arm64 2.41-12 [1621 kB] Get:82 http://localhost:3142/debian unstable/main arm64 libstdc++-14-dev arm64 14.3.0-8 [2567 kB] Get:83 http://localhost:3142/debian unstable/main arm64 libboost1.83-dev arm64 1.83.0-5 [10.6 MB] Get:84 http://localhost:3142/debian unstable/main arm64 libboost-test1.83.0 arm64 1.83.0-5 [438 kB] Get:85 http://localhost:3142/debian unstable/main arm64 libboost-test1.83-dev arm64 1.83.0-5 [527 kB] Get:86 http://localhost:3142/debian unstable/main arm64 libboost-test-dev arm64 1.83.0.2+b2 [3620 B] Get:87 http://localhost:3142/debian unstable/main arm64 libbz2-1.0 arm64 1.0.8-6 [37.8 kB] Get:88 http://localhost:3142/debian unstable/main arm64 libbz2-dev arm64 1.0.8-6 [31.9 kB] Get:89 http://localhost:3142/debian unstable/main arm64 libevent-2.1-7t64 arm64 2.1.12-stable-10+b1 [170 kB] Get:90 http://localhost:3142/debian unstable/main arm64 libffi8 arm64 3.5.2-2 [21.5 kB] Get:91 http://localhost:3142/debian unstable/main arm64 libgcc-15-dev arm64 15.2.0-4 [2373 kB] Get:92 http://localhost:3142/debian unstable/main arm64 libgmp10 arm64 2:6.3.0+dfsg-5 [535 kB] Get:93 http://localhost:3142/debian unstable/main arm64 libgmpxx4ldbl arm64 2:6.3.0+dfsg-5 [329 kB] Get:94 http://localhost:3142/debian unstable/main arm64 libgmp-dev arm64 2:6.3.0+dfsg-5 [621 kB] Get:95 http://localhost:3142/debian unstable/main arm64 libnettle8t64 arm64 3.10.2-1 [305 kB] Get:96 http://localhost:3142/debian unstable/main arm64 libhogweed6t64 arm64 3.10.2-1 [332 kB] Get:97 http://localhost:3142/debian unstable/main arm64 libunistring5 arm64 1.3-2 [453 kB] Get:98 http://localhost:3142/debian unstable/main arm64 libidn2-0 arm64 2.3.8-4 [108 kB] Get:99 http://localhost:3142/debian unstable/main arm64 libp11-kit0 arm64 0.25.9-2 [420 kB] Get:100 http://localhost:3142/debian unstable/main arm64 libtasn1-6 arm64 4.20.0-2 [47.3 kB] Get:101 http://localhost:3142/debian unstable/main arm64 libgnutls30t64 arm64 3.8.10-2 [1395 kB] Get:102 http://localhost:3142/debian unstable/main arm64 libzstd1 arm64 1.5.7+dfsg-1.1 [265 kB] Get:103 http://localhost:3142/debian unstable/main arm64 zlib1g arm64 1:1.3.dfsg+really1.3.1-1+b1 [85.1 kB] Get:104 http://localhost:3142/debian unstable/main arm64 libssl3t64 arm64 3.5.3-1 [2725 kB] Get:105 http://localhost:3142/debian unstable/main arm64 libunbound8 arm64 1.24.0-2 [559 kB] Get:106 http://localhost:3142/debian unstable/main arm64 libgnutls-dane0t64 arm64 3.8.10-2 [456 kB] Get:107 http://localhost:3142/debian unstable/main arm64 libgnutls-openssl27t64 arm64 3.8.10-2 [456 kB] Get:108 http://localhost:3142/debian unstable/main arm64 libidn2-dev arm64 2.3.8-4 [102 kB] Get:109 http://localhost:3142/debian unstable/main arm64 libp11-kit-dev arm64 0.25.9-2 [220 kB] Get:110 http://localhost:3142/debian unstable/main arm64 libtasn1-6-dev arm64 4.20.0-2 [96.7 kB] Get:111 http://localhost:3142/debian unstable/main arm64 nettle-dev arm64 3.10.2-1 [1319 kB] Get:112 http://localhost:3142/debian unstable/main arm64 libgnutls28-dev arm64 3.8.10-2 [1438 kB] Get:113 http://localhost:3142/debian unstable/main arm64 liblmdb0 arm64 0.9.31-1+b2 [43.5 kB] Get:114 http://localhost:3142/debian unstable/main arm64 liblmdb-dev arm64 0.9.31-1+b2 [60.3 kB] Get:115 http://localhost:3142/debian unstable/main arm64 libmbedcrypto16 arm64 3.6.4-2 [346 kB] Get:116 http://localhost:3142/debian unstable/main arm64 libmbedx509-7 arm64 3.6.4-2 [150 kB] Get:117 http://localhost:3142/debian unstable/main arm64 libmbedtls21 arm64 3.6.4-2 [229 kB] Get:118 http://localhost:3142/debian unstable/main arm64 libmbedtls-dev arm64 3.6.4-2 [821 kB] Get:119 http://localhost:3142/debian unstable/main arm64 libzstd-dev arm64 1.5.7+dfsg-1.1 [335 kB] Get:120 http://localhost:3142/debian unstable/main arm64 zlib1g-dev arm64 1:1.3.dfsg+really1.3.1-1+b1 [917 kB] Get:121 http://localhost:3142/debian unstable/main amd64 ncbi-vdb-data all 3.2.1+dfsg-2 [88.5 kB] Get:122 http://localhost:3142/debian unstable/main arm64 libncbi-vdb3 arm64 3.2.1+dfsg-2 [1096 kB] Get:123 http://localhost:3142/debian unstable/main arm64 libncbi-wvdb3 arm64 3.2.1+dfsg-2 [1097 kB] Get:124 http://localhost:3142/debian unstable/main arm64 libncbi-wvdb-dev arm64 3.2.1+dfsg-2 [1269 kB] Get:125 http://localhost:3142/debian unstable/main arm64 libncbi-vdb-dev arm64 3.2.1+dfsg-2 [1572 kB] Get:126 http://localhost:3142/debian unstable/main arm64 libnghttp2-14 arm64 1.64.0-1.1+b1 [71.7 kB] Get:127 http://localhost:3142/debian unstable/main amd64 libpkgconf3 amd64 1.8.1-4 [36.4 kB] Get:128 http://localhost:3142/debian unstable/main amd64 pkgconf-bin amd64 1.8.1-4 [30.2 kB] Get:129 http://localhost:3142/debian unstable/main arm64 pkgconf arm64 1.8.1-4 [26.1 kB] Get:130 http://localhost:3142/debian unstable/main arm64 libnghttp2-dev arm64 1.64.0-1.1+b1 [112 kB] Get:131 http://localhost:3142/debian unstable/main arm64 libpcre2-16-0 arm64 10.46-1 [247 kB] Get:132 http://localhost:3142/debian unstable/main arm64 libpcre2-32-0 arm64 10.46-1 [238 kB] Get:133 http://localhost:3142/debian unstable/main arm64 libpcre2-8-0 arm64 10.46-1 [262 kB] Get:134 http://localhost:3142/debian unstable/main arm64 libpcre2-posix3 arm64 10.46-1 [64.1 kB] Get:135 http://localhost:3142/debian unstable/main arm64 libpcre2-dev arm64 10.46-1 [750 kB] Get:136 http://localhost:3142/debian unstable/main arm64 libsqlite3-0 arm64 3.46.1-8 [884 kB] Get:137 http://localhost:3142/debian unstable/main arm64 libsqlite3-dev arm64 3.46.1-8 [1098 kB] Get:138 http://localhost:3142/debian unstable/main arm64 libstdc++-15-dev arm64 15.2.0-4 [2323 kB] Get:139 http://localhost:3142/debian unstable/main arm64 libuv1t64 arm64 1.51.0-2 [150 kB] Get:140 http://localhost:3142/debian unstable/main arm64 libuv1-dev arm64 1.51.0-2 [188 kB] Get:141 http://localhost:3142/debian unstable/main amd64 time amd64 1.9-0.3 [48.2 kB] Preconfiguring packages ... Fetched 374 MB in 2s (213 MB/s) Selecting previously unselected package libncursesw6:amd64. (Reading database ... 12899 files and directories currently installed.) Preparing to unpack .../000-libncursesw6_6.5+20250216-2_amd64.deb ... Unpacking libncursesw6:amd64 (6.5+20250216-2) ... Selecting previously unselected package libproc2-0:amd64. Preparing to unpack .../001-libproc2-0_2%3a4.0.4-9_amd64.deb ... Unpacking libproc2-0:amd64 (2:4.0.4-9) ... Selecting previously unselected package procps. Preparing to unpack .../002-procps_2%3a4.0.4-9_amd64.deb ... Unpacking procps (2:4.0.4-9) ... Selecting previously unselected package sensible-utils. Preparing to unpack .../003-sensible-utils_0.0.26_all.deb ... Unpacking sensible-utils (0.0.26) ... Selecting previously unselected package libmagic-mgc. Preparing to unpack .../004-libmagic-mgc_1%3a5.46-5_amd64.deb ... Unpacking libmagic-mgc (1:5.46-5) ... Selecting previously unselected package libmagic1t64:amd64. 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Unpacking gettext (0.23.1-2+b1) ... Selecting previously unselected package intltool-debian. Preparing to unpack .../055-intltool-debian_0.35.0+20060710.6_all.deb ... Unpacking intltool-debian (0.35.0+20060710.6) ... Selecting previously unselected package po-debconf. Preparing to unpack .../056-po-debconf_1.0.21+nmu1_all.deb ... Unpacking po-debconf (1.0.21+nmu1) ... Selecting previously unselected package debhelper. Preparing to unpack .../057-debhelper_13.28_all.deb ... Unpacking debhelper (13.28) ... Selecting previously unselected package libfakeroot:amd64. Preparing to unpack .../058-libfakeroot_1.37.1.2-1_amd64.deb ... Unpacking libfakeroot:amd64 (1.37.1.2-1) ... Selecting previously unselected package fakeroot. Preparing to unpack .../059-fakeroot_1.37.1.2-1_amd64.deb ... Unpacking fakeroot (1.37.1.2-1) ... Selecting previously unselected package gcc-14-base:arm64. Preparing to unpack .../060-gcc-14-base_14.3.0-8_arm64.deb ... Unpacking gcc-14-base:arm64 (14.3.0-8) ... 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Setting up libpcre2-posix3:arm64 (10.46-1) ... Setting up libhogweed6t64:arm64 (3.10.2-1) ... Setting up libcrypt-dev:arm64 (1:4.4.38-1) ... Setting up libc6-dev:arm64 (2.41-12) ... Setting up libgcc-14-dev:arm64 (14.3.0-8) ... Setting up libstdc++-14-dev:arm64 (14.3.0-8) ... Setting up libp11-kit-dev:arm64 (0.25.9-2) ... Setting up libsz2:arm64 (1.1.4-2) ... Setting up libbz2-dev:arm64 (1.0.8-6) ... Setting up libuv1-dev:arm64 (1.51.0-2) ... Setting up libnghttp2-dev:arm64 (1.64.0-1.1+b1) ... Setting up libboost1.83-dev:arm64 (1.83.0-5) ... Setting up libgcc-15-dev:arm64 (15.2.0-4) ... Setting up libpcre2-dev:arm64 (10.46-1) ... Setting up libssl3t64:arm64 (3.5.3-1) ... Setting up libaec-dev:arm64 (1.1.4-2) ... Setting up libncbi-vdb3:arm64 (3.2.1+dfsg-2) ... Setting up libboost-test1.83-dev:arm64 (1.83.0-5) ... Setting up libidn2-0:arm64 (2.3.8-4) ... Setting up libmbedtls-dev:arm64 (3.6.4-2) ... Setting up libboost-test-dev:arm64 (1.83.0.2+b2) ... Setting up libunbound8:arm64 (1.24.0-2) ... Setting up libgmpxx4ldbl:arm64 (2:6.3.0+dfsg-5) ... Setting up libstdc++-15-dev:arm64 (15.2.0-4) ... Setting up libsqlite3-dev:arm64 (3.46.1-8) ... Setting up libncbi-wvdb3:arm64 (3.2.1+dfsg-2) ... Setting up libidn2-dev:arm64 (2.3.8-4) ... Setting up zlib1g-dev:arm64 (1:1.3.dfsg+really1.3.1-1+b1) ... Setting up libncbi-wvdb-dev:arm64 (3.2.1+dfsg-2) ... Setting up libgnutls30t64:arm64 (3.8.10-2) ... Setting up libgnutls-openssl27t64:arm64 (3.8.10-2) ... Setting up libgmp-dev:arm64 (2:6.3.0+dfsg-5) ... Setting up nettle-dev:arm64 (3.10.2-1) ... Setting up libgnutls-dane0t64:arm64 (3.8.10-2) ... Setting up libncbi-vdb-dev:arm64 (3.2.1+dfsg-2) ... Setting up libgnutls28-dev:arm64 (3.8.10-2) ... Setting up sbuild-build-depends-main-dummy:arm64 (0.invalid.0) ... Processing triggers for libc-bin (2.41-12) ... +------------------------------------------------------------------------------+ | Check architectures | +------------------------------------------------------------------------------+ Arch check ok (arm64 included in any all) +------------------------------------------------------------------------------+ | Build environment | +------------------------------------------------------------------------------+ Kernel: Linux 6.1.0-32-amd64 #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) amd64 (x86_64) Toolchain package versions: binutils_2.45-7 dpkg-dev_1.22.21 g++-15_15.2.0-4 gcc-15_15.2.0-4 libc6-dev_2.41-12 libstdc++-14-dev_14.3.0-8 libstdc++-15-dev_15.2.0-4 libstdc++-15-dev-arm64-cross_15.2.0-4cross1 libstdc++6_15.2.0-4 libstdc++6-arm64-cross_15.2.0-4cross1 linux-libc-dev_6.16.9-1 Package versions: apt_3.1.6 apt-utils_3.1.6 autoconf_2.72-3.1 autoconf2.69_2.69-3.1 automake_1:1.17-4 autopoint_0.23.1-2 autotools-dev_20240727.1 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mount_2.41.2-3 ncbi-vdb-data_3.2.1+dfsg-2 ncurses-base_6.5+20250216-2 ncurses-bin_6.5+20250216-2 nettle-dev_3.10.2-1 openssl-provider-legacy_3.5.3-1 passwd_1:4.18.0-1 patch_2.8-2 perl_5.40.1-6 perl-base_5.40.1-6 perl-modules-5.40_5.40.1-6 pkgconf_1.8.1-4 pkgconf-bin_1.8.1-4 po-debconf_1.0.21+nmu1 procps_2:4.0.4-9 rpcsvc-proto_1.4.3-1 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.9-2 sensible-utils_0.0.26 sqv_1.3.0-3 sysvinit-utils_3.14-4 tar_1.35+dfsg-3.1 time_1.9-0.3 tzdata_2025b-5 util-linux_2.41.2-3 xz-utils_5.8.1-1.1 zlib1g_1:1.3.dfsg+really1.3.1-1+b1 zlib1g-dev_1:1.3.dfsg+really1.3.1-1+b1 +------------------------------------------------------------------------------+ | Build | +------------------------------------------------------------------------------+ Unpack source ------------- -----BEGIN PGP SIGNED MESSAGE----- Hash: SHA512 Format: 3.0 (quilt) Source: ncbi-blast+ Binary: ncbi-blast+, ncbi-blast+-legacy Architecture: any all Version: 2.17.0+ds-1 Maintainer: Debian Med Packaging Team Uploaders: Olivier Sallou , Andreas Tille , Aaron M. Ucko , Homepage: https://www.ncbi.nlm.nih.gov/IEB/ToolBox/CPP_DOC/ Standards-Version: 4.7.2 Vcs-Browser: https://salsa.debian.org/med-team/ncbi-blastplus Vcs-Git: https://salsa.debian.org/med-team/ncbi-blastplus.git Testsuite: autopkgtest Build-Depends: debhelper-compat (= 13), autoconf2.69 Build-Depends-Arch: libboost-test-dev, libbz2-dev, libc-dev-bin, libgnutls28-dev, liblmdb-dev, libmbedtls-dev, libncbi-vdb-dev [amd64 arm64 x32], libnghttp2-dev, libpcre2-dev, libsqlite3-dev, libuv1-dev, time, zlib1g-dev, procps Package-List: ncbi-blast+ deb science optional arch=any ncbi-blast+-legacy deb science optional arch=all Checksums-Sha1: baa77680b70f5c1fb125adad96de8a10d1eefa60 19159396 ncbi-blast+_2.17.0+ds.orig.tar.xz 6fc9e933251320960235cb822a3a6ddcdb545c33 43260 ncbi-blast+_2.17.0+ds-1.debian.tar.xz Checksums-Sha256: cf5365f3e2ad626abea3eedb0f2df18d31236ea0adb328f6b3dab3e872977bb5 19159396 ncbi-blast+_2.17.0+ds.orig.tar.xz 8b5cc04dac72d9a7e2b82d08757ae422b1da68fa489e6586f865c8f79a9c63d8 43260 ncbi-blast+_2.17.0+ds-1.debian.tar.xz Files: d52c1afa6d63ff0fbb454350e0f7e411 19159396 ncbi-blast+_2.17.0+ds.orig.tar.xz 7598bfaf99cae1c701c7d1c0cfe52291 43260 ncbi-blast+_2.17.0+ds-1.debian.tar.xz Dgit: 99ed4bc2ca2ecf7196a915a4cffb7130885945cf debian archive/debian/2.17.0+ds-1 https://git.dgit.debian.org/ncbi-blast+ -----BEGIN PGP SIGNATURE----- iQIzBAEBCgAdFiEEfDq5z9IwvTDdAJxZHnCRsfFKZKIFAmjZ+S8ACgkQHnCRsfFK ZKK6pg//bLz/odw+ONLaDP8PKQ+Bfy0NRApft5WZst3Fydejy3+cmcl+i+RIYnHu wdbg1xYOd20ru3n9tBQlFxRkSmsi5jSnjqFjyaS+h62TMwpuYp+ZHjc/N4KnfRk3 hqHaCy0j8Cym3qVDfdGyiYwc4cAvcT5BRcRbe61DpxkW1VnAmcVtqipb7zotUdWp fsSK1g8RdfWVze4kqda9+X5VDpbYsbRbI37mI+SZFRBnGIWQ8G59xeutl6VPekM4 OcYmzk7gbGTur0tsjQRsM42Q6f9ugs/azbFOHd5BEFbtc72Ei4GM82GN+BaUeoV9 L2GiijyUUpIpH+YfoTFKzKqk489CC2nNJjwUC3P/s2KeafHUfPwXgxpBf/+3YpJd bnn1Pktl4d1sj9MSppB9hfdV1O1x76WgZwImO71CQY1O5wyG9W9k2NuahGwUtyPi blJSAtGtMh/C02WdrUBa3ZsQCmfJEIXyzOpxsCFqwQuCwSlB2131tAmpKQGjnEhp ews+yl49UY77wltFQGU8AsMUVZJ0f2GFl6xVudIwKIlk/+s2mqqn+auvFH7lHuWo e09TE0SG2U30UlEwHNptLXCh1+NX81M1O7pQcck6y54NQvccCaG+PiYq4JQjZp84 C0snBmf/+eKUHWIK4l3IL1HLE9SXTcsGrOGaOyNXRZ5Dq8Yq0PU= =VOtj -----END PGP SIGNATURE----- dpkg-source: warning: cannot verify inline signature for ./ncbi-blast+_2.17.0+ds-1.dsc: no acceptable signature found dpkg-source: info: extracting ncbi-blast+ in /<> dpkg-source: info: unpacking ncbi-blast+_2.17.0+ds.orig.tar.xz dpkg-source: info: unpacking ncbi-blast+_2.17.0+ds-1.debian.tar.xz dpkg-source: info: using patch list from debian/patches/series dpkg-source: info: applying system_mbedtls_only dpkg-source: info: applying optin_usage_report dpkg-source: info: applying enable_clean_after_failed_compile dpkg-source: info: applying hurd_fixes dpkg-source: info: applying legacy_rename_rpsblast dpkg-source: info: applying fix_lib_deps dpkg-source: info: applying no_multiarch_rpath dpkg-source: info: applying use_pie_for_apps dpkg-source: info: applying skip_services_unit_test dpkg-source: info: applying fix_configure dpkg-source: info: applying support_x32 dpkg-source: info: applying suppress_tls_version_checks dpkg-source: info: applying optionally_keep_sequence dpkg-source: info: applying fix_unit_tests dpkg-source: info: applying spelling dpkg-source: info: applying support_gcc10 dpkg-source: info: applying run_perl_directly dpkg-source: info: applying tune_lmdb_defaults dpkg-source: info: applying 2to3 dpkg-source: info: applying big_endian_workaround Check disk space ---------------- Sufficient free space for build User Environment ---------------- APT_CONFIG=/var/lib/sbuild/apt.conf CONFIG_SITE=/etc/dpkg-cross/cross-config.arm64 DEB_BUILD_OPTIONS=nocheck HOME=/sbuild-nonexistent LANG=en_US.UTF-8 LC_ALL=C.UTF-8 LOGNAME=crossqa OLDPWD=/home/crossqa PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games SBUILD_CONFIG=/tmp/tmp.bIEQR8Jfpd/sbuild.conf SCHROOT_ALIAS_NAME=unstable-amd64-sbuild SCHROOT_CHROOT_NAME=sid-amd64-sbuild SCHROOT_COMMAND=env SCHROOT_GID=1000 SCHROOT_GROUP=crossqa SCHROOT_SESSION_ID=sid-amd64-sbuild-2eb78da7-b685-4460-8cd5-19063878b4d2 SCHROOT_UID=1000 SCHROOT_USER=crossqa SHELL=/bin/sh USER=crossqa XDG_SESSION_CLASS=user dpkg-buildpackage ----------------- Command: dpkg-buildpackage --sanitize-env -aarm64 -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1 dpkg-buildpackage: info: source package ncbi-blast+ dpkg-buildpackage: info: source version 2.17.0+ds-1 dpkg-buildpackage: info: source distribution unstable dpkg-buildpackage: info: source changed by Aaron M. Ucko dpkg-architecture: warning: specified GNU system type aarch64-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable dpkg-source --before-build . dpkg-buildpackage: info: host architecture arm64 dpkg-source: info: using options from ncbi-blast+-2.17.0+ds/debian/source/options: --extend-diff-ignore=(^|/)config.(sub|guess)$ debian/rules clean dh clean --sourcedirectory=c++ --with-autoreconf dh_auto_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf dh_autoreconf_clean -O--sourcedirectory=c\+\+ -O--with-autoreconf debian/rules override_dh_clean make[1]: Entering directory '/<>' cp c++/src/util/lmdb/Makefile.orig c++/src/util/lmdb/Makefile.orig.save cp c++/src/util/lmdbxx/Makefile.orig c++/src/util/lmdbxx/Makefile.orig.save cp c++/src/util/lmdbxx/lmdb++.h.orig c++/src/util/lmdbxx/lmdb++.h.orig.save cp c++/configure.orig configure.orig.save dh_clean #Tricky - for each module directory there may be several module files #or there may be none but then there is still a module named after the #directory. Clean everything! for x in c++/src/objects/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ /<>/c++/BUILD.native/build/new_module.sh $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objects/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.in /bin/sh: 2: cd: can't cd to c++/src/objects/Makefile.sources /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.cmd /bin/sh: 2: cd: can't cd to c++/src/objects/nt_sources.sh /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:189: override_dh_clean] Error 127 (ignored) for x in c++/src/objtools/eutils/* ; do \ (cd "$x" && ( \ mods="`echo *.module`" ; \ [ "${mods#*\*}" = "$mods" ] || mods="`basename $x`" ; \ for mod in $mods ; do \ /<>/c++/BUILD.native/build/new_module.sh --dtd $mod purge_sources ; \ done ) ; \ ) ; \ done /bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/CMakeLists.txt /bin/sh: 2: cd: can't cd to c++/src/objtools/eutils/Makefile.in /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found /bin/sh: 6: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:190: override_dh_clean] Error 127 (ignored) cd c++/src/objtools/eutils/efetch && \ /<>/c++/BUILD.native/build/new_module.sh --xsd efetch purge_sources /bin/sh: 2: /<>/c++/BUILD.native/build/new_module.sh: not found make[1]: [debian/rules:191: override_dh_clean] Error 127 (ignored) rm -rf c++/compilers/dll c++/config.log c++/Makefile rm -f c++/configure.lineno c++/src/objects/blastxml/blastxml.module rm -f c++/include/common/ncbi_revision.h find -name check_exec.pid -delete rm -rf c++/BUILD c++/BUILD.native fakehome mv configure.orig.save c++/configure.orig mv c++/src/util/lmdb/Makefile.orig.save c++/src/util/lmdb/Makefile.orig mv c++/src/util/lmdbxx/Makefile.orig.save c++/src/util/lmdbxx/Makefile.orig mv c++/src/util/lmdbxx/lmdb++.h.orig.save c++/src/util/lmdbxx/lmdb++.h.orig make[1]: Leaving directory '/<>' debian/rules binary-arch dh binary-arch --sourcedirectory=c++ --with-autoreconf dh_update_autotools_config -a -O--sourcedirectory=c\+\+ -O--with-autoreconf debian/rules override_dh_autoreconf make[1]: Entering directory '/<>' cd c++ && \ autoheader2.69 -Isrc/build-system src/build-system/configure.ac \ && cd src/build-system && autoconf2.69 src/build-system/configure.ac:10530: warning: *** Please don't forget to update .../src/build-system/NEWS if appropriate! *** configure.ac:10530: warning: *** Please don't forget to update .../src/build-system/NEWS if appropriate! *** make[1]: Leaving directory '/<>' debian/rules override_dh_auto_configure-arch make[1]: Entering directory '/<>' cd c++ && PREBUILT_PTB_EXE=bootstrap \ ./configure --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-sse42 --with-vdb=/usr VDB_INCLUDE="-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc" VDB_LIBDIR=/usr/lib/aarch64-linux-gnu CFLAGS_FOR_BUILD="-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIE" LDFLAGS_FOR_BUILD="-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now" --without-objects \ --without-algo --without-app --with-build-root=BUILD.native || \ (tail -v -n +0 config.log BUILD.native/status/config.log; exit 1) configure: WARNING: unrecognized options: --without-dbapi, --without-objects, --without-algo configure: creating cache config.cache configure: WARNING: --with(out)-objects is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-dbapi is deprecated configure: WARNING: please simply pass an appropriate project list configure: WARNING: --with(out)-algo is deprecated configure: WARNING: please simply pass an appropriate project list checking TeamCity build number... none checking VCS revision... unknown checking NCBI stable components' version... unknown checking build system type... x86_64-pc-linux-gnu checking host system type... x86_64-pc-linux-gnu checking for a BSD-compatible install... /usr/bin/install -c checking for gcc... gcc checking whether the C compiler works... no configure: error: in `/<>/c++': configure: error: C compiler cannot create executables See `config.log' for more details ==> config.log <== This file contains any messages produced by compilers while running configure, to aid debugging if configure makes a mistake. It was created by ncbi-tools++ configure 0.0, which was generated by GNU Autoconf 2.69. Invocation command line was $ /<>/c++/src/build-system/configure --srcdir=/<>/c++ --without-debug --with-strip --with-openmp --with-mt --without-vdb --without-gnutls --without-gcrypt --with-build-root=./ReleaseMT --with-experimental=Int8GI --without-autodep --without-makefile-auto-update --with-flat-makefile --without-caution --without-dbapi --without-lzo --without-debug --without-sse42 --with-vdb=/usr VDB_INCLUDE=-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc VDB_LIBDIR=/usr/lib/aarch64-linux-gnu CFLAGS_FOR_BUILD=-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIE LDFLAGS_FOR_BUILD=-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now --without-objects --without-algo --without-app --with-build-root=BUILD.native ## --------- ## ## Platform. ## ## --------- ## hostname = debian-ci-siliconvalley uname -m = x86_64 uname -r = 6.1.0-32-amd64 uname -s = Linux uname -v = #1 SMP PREEMPT_DYNAMIC Debian 6.1.129-1 (2025-03-06) /usr/bin/uname -p = unknown /bin/uname -X = unknown /bin/arch = x86_64 /usr/bin/arch -k = unknown /usr/convex/getsysinfo = unknown /usr/bin/hostinfo = unknown /bin/machine = unknown /usr/bin/oslevel = unknown /bin/universe = unknown PATH: /usr/local/sbin PATH: /usr/local/bin PATH: /usr/sbin PATH: /usr/bin PATH: /sbin PATH: /bin PATH: /usr/games ## ----------- ## ## Core tests. ## ## ----------- ## configure:4439: creating cache config.cache configure:6375: WARNING: --with(out)-objects is deprecated configure:6377: WARNING: please simply pass an appropriate project list configure:6381: WARNING: --with(out)-dbapi is deprecated configure:6383: WARNING: please simply pass an appropriate project list configure:6387: WARNING: --with(out)-algo is deprecated configure:6389: WARNING: please simply pass an appropriate project list configure:6541: checking TeamCity build number configure:6552: result: none configure:6557: checking VCS revision configure:6580: result: unknown configure:6592: checking NCBI stable components' version configure:6604: result: unknown configure:6647: checking build system type configure:6661: result: x86_64-pc-linux-gnu configure:6681: checking host system type configure:6694: result: x86_64-pc-linux-gnu configure:6751: checking for a BSD-compatible install configure:6819: result: /usr/bin/install -c configure:7022: checking for gcc configure:7038: found /usr/bin/gcc configure:7049: result: gcc configure:7278: checking for C compiler version configure:7287: gcc --version >&5 gcc (Debian 15.2.0-4) 15.2.0 Copyright (C) 2025 Free Software Foundation, Inc. This is free software; see the source for copying conditions. There is NO warranty; not even for MERCHANTABILITY or FITNESS FOR A PARTICULAR PURPOSE. configure:7298: $? = 0 configure:7287: gcc -v >&5 Using built-in specs. COLLECT_GCC=gcc COLLECT_LTO_WRAPPER=/usr/libexec/gcc/x86_64-linux-gnu/15/lto-wrapper OFFLOAD_TARGET_NAMES=nvptx-none:amdgcn-amdhsa OFFLOAD_TARGET_DEFAULT=1 Target: x86_64-linux-gnu Configured with: ../src/configure -v --with-pkgversion='Debian 15.2.0-4' --with-bugurl=file:///usr/share/doc/gcc-15/README.Bugs --enable-languages=c,ada,c++,go,d,fortran,objc,obj-c++,m2,rust,cobol,algol68 --prefix=/usr --with-gcc-major-version-only --program-suffix=-15 --program-prefix=x86_64-linux-gnu- --enable-shared --enable-linker-build-id --libexecdir=/usr/libexec --without-included-gettext --enable-threads=posix --libdir=/usr/lib --enable-nls --enable-bootstrap --enable-clocale=gnu --enable-libstdcxx-debug --enable-libstdcxx-time=yes --with-default-libstdcxx-abi=new --enable-libstdcxx-backtrace --enable-gnu-unique-object --disable-vtable-verify --enable-plugin --enable-default-pie --with-system-zlib --enable-libphobos-checking=release --with-target-system-zlib=auto --enable-objc-gc=auto --enable-multiarch --disable-werror --enable-cet --with-arch-32=i686 --with-abi=m64 --with-multilib-list=m32,m64,mx32 --enable-multilib --with-tune=generic --enable-offload-targets=nvptx-none=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-nvptx/usr,amdgcn-amdhsa=/build/reproducible-path/gcc-15-15.2.0/debian/tmp-gcn/usr --enable-offload-defaulted --without-cuda-driver --enable-checking=release --build=x86_64-linux-gnu --host=x86_64-linux-gnu --target=x86_64-linux-gnu --with-build-config=bootstrap-lto-lean --enable-link-serialization=3 Thread model: posix Supported LTO compression algorithms: zlib zstd gcc version 15.2.0 (Debian 15.2.0-4) ... rest of stderr output deleted ... configure:7298: $? = 0 configure:7287: gcc -V >&5 gcc: error: unrecognized command-line option '-V' gcc: fatal error: no input files compilation terminated. configure:7298: $? = 1 configure:7287: gcc -qversion >&5 gcc: error: unrecognized command-line option '-qversion'; did you mean '--version'? gcc: fatal error: no input files compilation terminated. configure:7298: $? = 1 configure:7318: checking whether the C compiler works configure:7340: gcc -g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -D_FORTIFY_SOURCE=2 -specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now conftest.c >&5 gcc: error: unrecognized command-line option '-mbranch-protection=standard' configure:7344: $? = 1 configure:7382: result: no configure: failed program was: | /* confdefs.h */ | #define NCBI_INT8_GI 1 | #define NCBI_CXX_TOOLKIT 1 | #define HAVE_COMMON_NCBI_BUILD_VER_H 1 | #define HOST "x86_64-pc-linux-gnu" | #define HOST_CPU "x86_64" | #define HOST_VENDOR "pc" | #define HOST_OS "linux-gnu" | /* end confdefs.h. */ | | int | main () | { | | ; | return 0; | } configure:7387: error: in `/<>/c++': configure:7389: error: C compiler cannot create executables See `config.log' for more details ## ---------------- ## ## Cache variables. ## ## ---------------- ## ac_cv_build=x86_64-pc-linux-gnu ac_cv_env_CCC_set= ac_cv_env_CCC_value= ac_cv_env_CC_set= ac_cv_env_CC_value= ac_cv_env_CFLAGS_set=set ac_cv_env_CFLAGS_value='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic' ac_cv_env_CPPFLAGS_set=set ac_cv_env_CPPFLAGS_value=-D_FORTIFY_SOURCE=2 ac_cv_env_CPP_set= ac_cv_env_CPP_value= ac_cv_env_CXXCPP_set= ac_cv_env_CXXCPP_value= ac_cv_env_CXXFLAGS_set=set ac_cv_env_CXXFLAGS_value='-g -O2 -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard' ac_cv_env_CXX_set= ac_cv_env_CXX_value= ac_cv_env_LDFLAGS_set=set ac_cv_env_LDFLAGS_value='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now' ac_cv_env_LIBS_set= ac_cv_env_LIBS_value= ac_cv_env_XMKMF_set= ac_cv_env_XMKMF_value= ac_cv_env_build_alias_set= ac_cv_env_build_alias_value= ac_cv_env_host_alias_set= ac_cv_env_host_alias_value= ac_cv_env_target_alias_set= ac_cv_env_target_alias_value= ac_cv_host=x86_64-pc-linux-gnu ac_cv_path_install='/usr/bin/install -c' ac_cv_prog_ac_ct_CC=gcc ## ----------------- ## ## Output variables. ## ## ----------------- ## AES_FLAG='' ALLOCA='' ALLOW_UNDEF='' AMQ='' APACHE_ARROW_INCLUDE='' APACHE_ARROW_LIBS='' APACHE_ARROW_STATIC_LIBS='' APP_LDFLAGS='' APP_LIBS_SETTING='' APP_LIB_SETTING='' APP_NOCOPY='' APP_OR_NULL='' AR='' AR_FILTER='' AR_WRAPPER='' AS_NEEDED='' ATOMIC64_LIBS='' AVROGENCPP='' AVRO_INCLUDE='' AVRO_LIBS='' AVRO_STATIC_LIBS='' AWK='' AWS_SDK_INCLUDE='' AWS_SDK_LIBS='' AWS_SDK_STATIC_LIBS='' BACKWARD_CPP_INCLUDE='' BACKWARD_CPP_LIBS='' BASENAME='' BDB_CACHE_LIB='' BDB_LIB='' BERKELEYDB_CXX_LIBS='' BERKELEYDB_CXX_STATIC_LIBS='' BERKELEYDB_INCLUDE='' BERKELEYDB_LIBS='' BERKELEYDB_STATIC_LIBS='' BINCOPY='' BOOST_CHRONO_LIBS='' BOOST_CHRONO_STATIC_LIBS='' BOOST_FILESYSTEM_LIBS='' BOOST_FILESYSTEM_STATIC_LIBS='' BOOST_INCLUDE='' BOOST_IOSTREAMS_LIBS='' BOOST_IOSTREAMS_STATIC_LIBS='' BOOST_LIBPATH='' BOOST_PROGRAM_OPTIONS_LIBS='' BOOST_PROGRAM_OPTIONS_STATIC_LIBS='' BOOST_REGEX_LIBS='' BOOST_REGEX_STATIC_LIBS='' BOOST_SERIALIZATION_LIBS='' BOOST_SERIALIZATION_STATIC_LIBS='' BOOST_STATIC_TAG='' BOOST_SYSTEM_LIBS='' BOOST_SYSTEM_STATIC_LIBS='' BOOST_TAG='' BOOST_TEST_PEM_LIBS='' BOOST_TEST_PEM_STATIC_LIBS='' BOOST_TEST_TEM_LIBS='' BOOST_TEST_TEM_STATIC_LIBS='' BOOST_TEST_UTF_LIBS='' BOOST_TEST_UTF_STATIC_LIBS='' BOOST_THREAD_LIBS='' BOOST_THREAD_STATIC_LIBS='' BUILD_EXEEXT='' BUILD_OBJEXT='' BZ2_INCLUDE='' BZ2_LIB='' BZ2_LIBS='' CASSANDRA_INCLUDE='' CASSANDRA_LIBS='' CASSANDRA_STATIC_LIBS='' CC='gcc' CCACHE='' CC_FILTER='' CC_FOR_BUILD='' CC_WRAPPER='' CD_REPORTER='' CEREAL_INCLUDE='' CFLAGS='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic' CFLAGS_DLL='' CFLAGS_FOR_BUILD='-g -O2 -Werror=implicit-function-declaration -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard -Wall -pedantic -fPIE' CHECK_ARG='' CHECK_OS_NAME='' CHECK_TIMEOUT_MULT='' CHECK_TOOLS='' COLOR_DIAGNOSTICS='' COMPILER='' CONNEXT='' CPP='' CPPFLAGS='-D_FORTIFY_SOURCE=2' CPPFLAGS_FOR_BUILD='' CPPKAFKA_INCLUDE='' CPPKAFKA_LIBS='' CPPKAFKA_STATIC_LIBS='' CPP_FOR_BUILD='' CRC32C_INCLUDE='' CRC32C_LIBS='' CRC32C_STATIC_LIBS='' CRYPT_LIBS='' CURL_CONFIG='' CURL_INCLUDE='' CURL_LIBS='' CURL_STATIC_LIBS='' CXX='' CXXCPP='' CXXFLAGS='-g -O2 -ffile-prefix-map=/<>=. -specs=/usr/share/dpkg/no-pie-compile.specs -fstack-protector-strong -fstack-clash-protection -Wformat -Werror=format-security -mbranch-protection=standard' CXXFLAGS_DLL='' CXX_FILTER='' CXX_WRAPPER='' C_LIBS='' C_LINK='' DBAPI_CTLIB='' DBAPI_DRIVER='' DBAPI_FTDS100='' DBAPI_FTDS14='' DBAPI_FTDS='' DBAPI_MYSQL='' DBAPI_ODBC='' DEBUG_SFX='' DEFS='' DEMANGLE_LIBS='' DEPFLAGS='' DEPFLAGS_POST='' DISTCC='' DLL='' DLL_LDFLAGS='' DLL_LIB_SETTING='' DL_LIBS='' DPKG_ARCHITECTURE='' DRMAA2_INCLUDE='' DRMAA2_LIBS='' D_SFX='' ECHO_C='' ECHO_N='-n' ECHO_T='' EGREP='' EGREP_Q='' EXEEXT='' EXPAT_INCLUDE='' EXPAT_LIBS='' EXPAT_STATIC_LIBS='' FASTCGIPP_INCLUDE='' FASTCGIPP_LIBS='' FASTCGI_INCLUDE='' FASTCGI_LIBS='' FASTCGI_OBJS='' FAST_CFLAGS='' FAST_CXXFLAGS='' FAST_LDFLAGS='' FEATURES='' FORBID_UNDEF='' FORCE_STATIC_LIB='' FOUNDATION_LIBS='' FREETYPE_INCLUDE='' FREETYPE_LIBS='' FTDS100_CTLIB_INCLUDE='' FTDS100_CTLIB_LIB='' FTDS100_CTLIB_LIBS='' FTDS100_INCLUDE='' FTDS100_LIB='' FTDS100_LIBS='' FTDS14_CTLIB_INCLUDE='' FTDS14_CTLIB_LIB='' FTDS14_CTLIB_LIBS='' FTDS14_INCLUDE='' FTDS14_LIB='' FTDS14_LIBS='' FTDS_INCLUDE='' FTDS_LIB='' FTDS_LIBS='' FTGL_INCLUDE='' FTGL_LIBS='' GCCPCH='' GCRYPT_INCLUDE='' GCRYPT_LIBS='' GIF_INCLUDE='' GIF_LIBS='' GL2PS_INCLUDE='' GL2PS_LIBS='' GL2PS_STATIC_LIBS='' GLEW_INCLUDE='' GLEW_LIBS='' GLEW_STATIC_LIBS='' GLUT_INCLUDE='' GLUT_LIBS='' GMOCK_INCLUDE='' GMOCK_LIBS='' GMOCK_STATIC_LIBS='' GMP_INCLUDE='' GMP_LIBS='' GNUTLS_INCLUDE='' GNUTLS_LIBS='' GOOGLE_CLOUD_INCLUDE='' GOOGLE_CLOUD_LIBS='' GREP='' GRPC_BIN='' GRPC_CPP_PLUGIN='' GRPC_INCLUDE='' GRPC_LIBS='' GRPC_REFLECTION_LIBS='' GRPC_UNSECURE_LIBS='' GSOAP_INCLUDE='' GSOAP_LIBS='' GSOAP_PATH='' GSOAP_SOAPCPP2='' GSOAP_WSDL2H='' H2O_INCLUDE='' H2O_LIBS='' H2O_STATIC_LIBS='' HDF5_INCLUDE='' HDF5_LIBS='' HIREDIS_INCLUDE='' HIREDIS_LIBS='' HIREDIS_STATIC_LIBS='' ICONV_LIBS='' ICU_CONFIG='' ICU_INCLUDE='' ICU_LIBS='' ICU_STATIC_LIBS='' IF_DEACTIVATING='' IF_REBUILDING_CONDITIONALLY='' IF_REBUILDING_LIBS='' IF_WITH_DLL='' INFLUXDB_INCLUDE='' INSTALL_DATA='${INSTALL} -m 644' INSTALL_PROGRAM='${INSTALL}' INSTALL_SCRIPT='${INSTALL}' JAEGER_INCLUDE='' JAEGER_LIBS='' JAEGER_STATIC_LIBS='' JDK_INCLUDE='' JDK_PATH='' JPEG_INCLUDE='' JPEG_LIBS='' KRB5_CONFIG='' KRB5_INCLUDE='' KRB5_LIBS='' KSTAT_LIBS='' KeepStateTarget='' LAPACK_INCLUDE='' LAPACK_LIBS='' LDD='' LDD_R='' LDFLAGS='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now' LDFLAGS_FOR_BUILD='-specs=/usr/share/dpkg/no-pie-link.specs -Wl,-z,relro -Wl,-z,now' LEVELDB_INCLUDE='' LEVELDB_LIBS='' LIBDW_INCLUDE='' LIBDW_LIBS='' LIBEXSLT_INCLUDE='' LIBEXSLT_LIBS='' LIBEXSLT_STATIC_LIBS='' LIBGCRYPT_CONFIG='' LIBGNUTLS_CONFIG='' LIBIMR='' LIBOB='' LIBOBJS='' LIBRDKAFKA_INCLUDE='' LIBRDKAFKA_LIBS='' LIBRDKAFKA_STATIC_LIBS='' LIBS='' LIBSSH2_INCLUDE='' LIBSSH2_LIBS='' LIBSSH2_STATIC_LIBS='' LIBSSH_INCLUDE='' LIBSSH_LIBS='' LIBSSH_STATIC_LIBS='' LIBSSSDB='' LIBSSSUTILS='' LIBUNWIND_INCLUDE='' LIBUNWIND_LIBS='' LIBURING_INCLUDE='' LIBURING_LIBS='' LIBUV_INCLUDE='' LIBUV_LIBS='' LIBUV_STATIC_LIBS='' LIBXLSXWRITER_INCLUDE='' LIBXLSXWRITER_LIBS='' LIBXLSXWRITER_STATIC_LIBS='' LIBXML_INCLUDE='' LIBXML_LIBS='' LIBXML_STATIC_LIBS='' LIBXSLT_INCLUDE='' LIBXSLT_LIBS='' LIBXSLT_STATIC_LIBS='' LIB_OR_DLL='' LINK='' LINK_DLL='' LINK_FILTER='' LINK_LOADABLE='' LINK_WRAPPER='' LMDB_INCLUDE='' LMDB_LIB='' LMDB_LIBS='' LMDB_STATIC_LIBS='' LN_S='' LTLIBOBJS='' LZO_INCLUDE='' LZO_LIBS='' MAGIC_INCLUDE='' MAGIC_LIBS='' MAKE='/usr/bin/make' MATH_LIBS='' MBEDTLS_INCLUDE='' MBEDTLS_LIBS='' MIMETIC_INCLUDE='' MIMETIC_LIBS='' MONGODB3_INCLUDE='' MONGODB3_LIBS='' MONGODB3_STATIC_LIBS='' MONGODB_INCLUDE='' MONGODB_LIBS='' MONGODB_STATIC_LIBS='' MSGSL_INCLUDE='' MT_SFX='' MUPARSER_INCLUDE='' MUPARSER_LIBS='' MYSQL_INCLUDE='' MYSQL_LIBS='' NCBIATOMIC_LIB='' NCBICRYPT_INCLUDE='' NCBICRYPT_LIBS='' NCBI_C_INCLUDE='' NCBI_C_LIBPATH='' NCBI_C_ncbi='' NCBI_GIT_BRANCH='' NCBI_PLATFORM_BITS='' NCBI_REVISION='' NCBI_SC_VERSION='0' NCBI_SSS_INCLUDE='' NCBI_SSS_LIBPATH='' NCBI_SUBVERSION_REVISION='0' NCBI_TEAMCITY_BUILDCONF_NAME='' NCBI_TEAMCITY_BUILD_ID='' NCBI_TEAMCITY_BUILD_NUMBER='0' NCBI_TEAMCITY_PROJECT_NAME='' NETTLE_INCLUDE='' NETTLE_LIBS='' NETWORK_LIBS='' NETWORK_PURE_LIBS='' NGHTTP2_INCLUDE='' NGHTTP2_LIBS='' NGHTTP2_STATIC_LIBS='' NGS_INCLUDE='' NGS_LIBS='' NGS_STATIC_LIBS='' NLOHMANN_JSON_INCLUDE='' NO_AS_NEEDED='' NO_STRICT_ALIASING='' NO_WHOLE_ARCHIVE='' OBJCXX_CXXFLAGS='' OBJCXX_LIBS='' OBJEXT='' ODBC_INCLUDE='' ODBC_LIBS='' OECHEM_INCLUDE='' OECHEM_LIBS='' OPENGL_INCLUDE='' OPENGL_LIBS='' OPENGL_STATIC_LIBS='' OPENMP_FLAGS='' OPENSSL_INCLUDE='' OPENSSL_LIBS='' OPENSSL_STATIC_LIBS='' OPENTELEMETRY_INCLUDE='' OPENTELEMETRY_LIBS='' OPENTELEMETRY_STATIC_LIBS='' OPENTRACING_INCLUDE='' OPENTRACING_LIBS='' OPENTRACING_STATIC_LIBS='' OPT_GROUPS='' ORBACUS_INCLUDE='' ORBACUS_LIBPATH='' OSMESA_INCLUDE='' OSMESA_LIBS='' OSMESA_STATIC_LIBS='' OSTYPE='linux-gnu' PACKAGE_BUGREPORT='cpp-core@ncbi.nlm.nih.gov' PACKAGE_NAME='ncbi-tools++' PACKAGE_STRING='ncbi-tools++ 0.0' PACKAGE_TARNAME='ncbi-tools--' PACKAGE_URL='' PACKAGE_VERSION='0.0' PATH_SEPARATOR=':' PCRE2_INCLUDE='' PCRE2_LIBS='' PCREPOSIX_LIBS='' PCRE_INCLUDE='' PCRE_LEGACY_LIBS='' PCRE_LIB='' PCRE_LIBS='' PERL='' PERL_INCLUDE='' PERL_LIBS='' PNG_INCLUDE='' PNG_LIBS='' PROJECTS='' PROTOBUF_BIN='' PROTOBUF_INCLUDE='' PROTOBUF_LIBS='' PROTOC='' PYTHON25='' PYTHON25_INCLUDE='' PYTHON25_LIBS='' PYTHON26='' PYTHON26_INCLUDE='' PYTHON26_LIBS='' PYTHON27='' PYTHON27_INCLUDE='' PYTHON27_LIBS='' PYTHON3='' PYTHON3_INCLUDE='' PYTHON3_LIBS='' PYTHON='' PYTHON_INCLUDE='' PYTHON_LIBS='' RANLIB='' RESOLVER_LIBS='' ROCKSDB_INCLUDE='' ROCKSDB_LIBS='' RPCSVC_LIBS='' RT_LIBS='' RUNPATH_ORIGIN='' Rules='' SABLOT_INCLUDE='' SABLOT_LIBS='' SABLOT_STATIC_LIBS='' SASL2_INCLUDE='' SASL2_LIBS='' SED='' SGE_INCLUDE='' SGE_LIBS='' SHELL='/bin/bash' SP_INCLUDE='' SP_LIBS='' SQLITE3_INCLUDE='' SQLITE3_LIBS='' SQLITE3_STATIC_LIBS='' SQLITE3_WRAPPER='' SSE4_1_FLAG='' STATIC='' STRIP='' SYBASE_DBLIBS='' SYBASE_DLLS='' SYBASE_INCLUDE='' SYBASE_LCL_PATH='' SYBASE_LIBS='' SYBASE_PATH='' TAIL='' TAIL_N='' TCHECK_CL='' THREAD_LIBS='' THRIFT_INCLUDE='' THRIFT_LIBS='' THRIFT_STATIC_LIBS='' TIFF_INCLUDE='' TIFF_LIBS='' TOUCH='' UNGIF_INCLUDE='' UNGIF_LIBS='' UNIX_SRC='' UNIX_USR_PROJ='' UNLESS_PUBSEQOS='' UNLESS_WITH_DLL='' UNSAFE_MATH_FLAG='' USUAL_AND_DLL='' USUAL_AND_LIB='' UUIDGEN='' UUID_LIBS='' VALGRIND_PATH='' VDB_INCLUDE='-I/usr/include/ncbi-vdb -I/usr/include/ncbi-vdb/os/linux -I/usr/include/ncbi-vdb/os/unix -I/usr/include/ncbi-vdb/cc/gcc/aarch64 -I/usr/include/ncbi-vdb/cc/gcc' VDB_LIBS='' VDB_POST_LINK='' VDB_REQ='' VDB_STATIC_LIBS='' WHOLE_ARCHIVE='' WXWIDGETS_GL_LIBS='' WXWIDGETS_GL_STATIC_LIBS='' WXWIDGETS_INCLUDE='' WXWIDGETS_LIBS='' WXWIDGETS_POST_LINK='' WXWIDGETS_STATIC_LIBS='' XALAN_INCLUDE='' XALAN_LIBS='' XALAN_STATIC_LIBS='' XCONNEXT='' XERCES_INCLUDE='' XERCES_LIBS='' XERCES_STATIC_LIBS='' XMKMF='' XPM_INCLUDE='' XPM_LIBS='' XSLTPROC='' X_CFLAGS='' X_EXTRA_LIBS='' X_LIBS='' X_PRE_LIBS='' YAML_CPP_INCLUDE='' YAML_CPP_LIBS='' YAML_CPP_STATIC_LIBS='' ZORBA_INCLUDE='' ZORBA_LIBS='' ZORBA_STATIC_LIBS='' ZSTD_INCLUDE='' ZSTD_LIBS='' ZSTD_STATIC_LIBS='' Z_INCLUDE='' Z_LIB='' Z_LIBS='' _ACJNI_JAVAC='' ac_ct_CC='gcc' ac_ct_CC_FOR_BUILD='' ac_ct_CXX='' algo='' app='' bamread='' bdb='' bindir='${exec_prefix}/bin' build='x86_64-pc-linux-gnu' build_alias='' build_cpu='x86_64' build_os='linux-gnu' build_root='' build_vendor='pc' builddir='' c_ncbi_runpath='' check='' compiler='' compiler_root='' compiler_version='' configurables_mfname='' datadir='${datarootdir}' datarootdir='${prefix}/share' dbapi='' dll_ext='' docdir='${datarootdir}/doc/${PACKAGE_TARNAME}' dvidir='${docdir}' exe_ext='' exec_prefix='NONE' f_compile='' f_libpath='' f_outexe='' f_outlib='' f_outobj='' f_runpath='' freetds='' freetype_config='' gui='' has_dll_loadable='' host='x86_64-pc-linux-gnu' host_alias='' host_cpu='x86_64' host_os='linux-gnu' host_vendor='pc' htmldir='${docdir}' ifGNUmake='' includedir='${prefix}/include' infodir='${datarootdir}/info' internal='' lib_ext='' lib_l_ext='' lib_l_pre='' lib_pre='' libdir='${exec_prefix}/lib' libexecdir='${exec_prefix}/libexec' loadable_ext='' localedir='${datarootdir}/locale' localstatedir='${prefix}/var' make_shell='' mandir='${datarootdir}/man' mysql_config='' ncbi_id2proc_snp='' ncbi_id2proc_wgs='' ncbi_java='' ncbi_runpath='' ncbi_xloader_bam='' ncbi_xloader_csra='' ncbi_xloader_snp='' ncbi_xloader_sra='' ncbi_xloader_vdbgraph='' ncbi_xloader_wgs='' ncbi_xreader_pubseqos2='' ncbi_xreader_pubseqos='' ncbicntr='' obj_ext='' objects='' oldincludedir='/usr/include' pdfdir='${docdir}' prefix='NONE' program_transform_name='s,x,x,' psdir='${docdir}' runpath='' sbindir='${exec_prefix}/sbin' script_shell='' serial='' serial_ws50_rtti_kludge='' sharedstatedir='${prefix}/com' signature='' sraread='' srcdir='.' sssutils='' status_dir='' sysconfdir='${prefix}/etc' target_alias='' top_srcdir='' wxconf='' ## ----------- ## ## confdefs.h. ## ## ----------- ## /* confdefs.h */ #define NCBI_INT8_GI 1 #define NCBI_CXX_TOOLKIT 1 #define HAVE_COMMON_NCBI_BUILD_VER_H 1 #define HOST "x86_64-pc-linux-gnu" #define HOST_CPU "x86_64" #define HOST_VENDOR "pc" #define HOST_OS "linux-gnu" configure: exit 77 tail: cannot open 'BUILD.native/status/config.log' for reading: No such file or directory make[1]: *** [debian/rules:92: /<>/c++/BUILD.native/bin/datatool] Error 1 make[1]: Leaving directory '/<>' make: *** [debian/rules:221: binary-arch] Error 2 dpkg-buildpackage: error: debian/rules binary-arch subprocess returned exit status 2 -------------------------------------------------------------------------------- Build finished at 2025-09-30T15:58:20Z +------------------------------------------------------------------------------+ | Finished Timed Build Commands | +------------------------------------------------------------------------------+ rm -Rf /<>/ ------------------------------------------------------- I: Finished running 'rm -Rf /<>/'. Finished processing commands. -------------------------------------------------------------------------------- Finished -------- +------------------------------------------------------------------------------+ | Cleanup | +------------------------------------------------------------------------------+ Purging /<> Not cleaning session: cloned chroot in use E: Build failure (dpkg-buildpackage died) +------------------------------------------------------------------------------+ | Summary | +------------------------------------------------------------------------------+ Build Architecture: amd64 Build Profiles: cross nocheck Build Type: any Build-Space: n/a Build-Time: 4 Distribution: unstable Fail-Stage: build Foreign Architectures: arm64 Host Architecture: arm64 Install-Time: 17 Job: ncbi-blast+_2.17.0+ds-1 Machine Architecture: amd64 Package: ncbi-blast+ Package-Time: 41 Source-Version: 2.17.0+ds-1 Space: n/a Status: attempted Version: 2.17.0+ds-1 -------------------------------------------------------------------------------- Finished at 2025-09-30T15:58:20Z Build needed 00:00:41, no disk space