sbuild (Debian sbuild) 0.78.1 (09 February 2019) on gcc131.bak.milne.osuosl.org

+==============================================================================+
| ncbi-tools6 6.1.20170106+dfsg1-7 (s390x)     Sun, 15 Sep 2019 13:37:09 +0000 |
+==============================================================================+

Package: ncbi-tools6
Version: 6.1.20170106+dfsg1-7
Source Version: 6.1.20170106+dfsg1-7
Distribution: unstable
Machine Architecture: amd64
Host Architecture: s390x
Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any

I: NOTICE: Log filtering will replace 'var/run/schroot/mount/unstable-amd64-sbuild-11feff35-64dc-4c0f-b0ab-427c286c4ceb' with '<<CHROOT>>'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-WFq2VY/resolver-sCirdz' with '<<RESOLVERDIR>>'

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| Update chroot                                                                |
+------------------------------------------------------------------------------+

Get:1 http://debian.oregonstate.edu/debian unstable InRelease [139 kB]
Get:2 http://debian.oregonstate.edu/debian unstable/main Sources.diff/Index [27.9 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 Packages.diff/Index [27.9 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-15-0810.44.pdiff [5389 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-15-0810.44.pdiff [6611 B]
Get:4 http://debian.oregonstate.edu/debian unstable/main Sources 2019-09-15-0810.44.pdiff [5389 B]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 Packages 2019-09-15-0810.44.pdiff [6611 B]
Get:6 http://debian.oregonstate.edu/debian unstable/main s390x Packages [7939 kB]
Fetched 8145 kB in 2s (4074 kB/s)
Reading package lists...
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Building dependency tree...
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Calculating upgrade...
0 upgraded, 0 newly installed, 0 to remove and 0 not upgraded.

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| Fetch source files                                                           |
+------------------------------------------------------------------------------+


Check APT
---------

Checking available source versions...

Download source files with APT
------------------------------

Reading package lists...
NOTICE: 'ncbi-tools6' packaging is maintained in the 'Git' version control system at:
https://salsa.debian.org/med-team/ncbi-tools6.git
Please use:
git clone https://salsa.debian.org/med-team/ncbi-tools6.git
to retrieve the latest (possibly unreleased) updates to the package.
Need to get 59.8 MB of source archives.
Get:1 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-7 (dsc) [2881 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-7 (tar) [58.3 MB]
Get:3 http://debian.oregonstate.edu/debian unstable/main ncbi-tools6 6.1.20170106+dfsg1-7 (diff) [1512 kB]
Fetched 59.8 MB in 1s (67.6 MB/s)
Download complete and in download only mode
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-WFq2VY/ncbi-tools6-6.1.20170106+dfsg1' with '<<PKGBUILDDIR>>'
I: NOTICE: Log filtering will replace 'build/ncbi-tools6-WFq2VY' with '<<BUILDDIR>>'

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| Install package build dependencies                                           |
+------------------------------------------------------------------------------+


Setup apt archive
-----------------

Merged Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x, csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Filtered Build-Depends: debhelper (>= 11~), libc-dev, libstdc++-dev, build-essential:amd64, fakeroot:amd64, crossbuild-essential-s390x:amd64, libc-dev:s390x, libstdc++-dev:s390x, csh, libglu1-mesa-dev, libgnutls28-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
dpkg-deb: building package 'sbuild-build-depends-main-dummy' in '/<<RESOLVERDIR>>/apt_archive/sbuild-build-depends-main-dummy.deb'.
Ign:1 copy:/<<RESOLVERDIR>>/apt_archive ./ InRelease
Get:2 copy:/<<RESOLVERDIR>>/apt_archive ./ Release [957 B]
Ign:3 copy:/<<RESOLVERDIR>>/apt_archive ./ Release.gpg
Get:4 copy:/<<RESOLVERDIR>>/apt_archive ./ Sources [463 B]
Get:5 copy:/<<RESOLVERDIR>>/apt_archive ./ Packages [530 B]
Fetched 1950 B in 0s (90.6 kB/s)
Reading package lists...
Reading package lists...

Install main build dependencies (apt-based resolver)
----------------------------------------------------

Installing build dependencies
Reading package lists...
Building dependency tree...
Reading state information...
The following additional packages will be installed:
  autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu
  bsdmainutils cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config
  crossbuild-essential-s390x csh debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config
  fonts-dejavu-core g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-9-base:s390x
  gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base
  gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x
  libatomic1-s390x-cross libbsd0 libbsd0:s390x libc6:s390x libc6-dev:s390x
  libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libdebian-dpkgcross-perl
  libdrm-amdgpu1:s390x libdrm-common libdrm-dev:s390x libdrm-nouveau2:s390x
  libdrm-radeon1:s390x libdrm2:s390x libedit2:s390x libegl-mesa0:s390x
  libegl1:s390x libelf1 libelf1:s390x libevent-2.1-6:s390x libexpat1
  libexpat1:s390x libexpat1-dev:s390x libffi6:s390x libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype6
  libfreetype6:s390x libfreetype6-dev:s390x libgbm1:s390x libgcc-9-dev:s390x
  libgcc-9-dev-s390x-cross libgcc1:s390x libgcc1-s390x-cross libgl1:s390x
  libgl1-mesa-dev:s390x libgl1-mesa-dri:s390x libglapi-mesa:s390x
  libgles1:s390x libgles2:s390x libglib2.0-0 libglu1-mesa:s390x
  libglu1-mesa-dev:s390x libglvnd-core-dev:s390x libglvnd-dev:s390x
  libglvnd0:s390x libglx-mesa0:s390x libglx0:s390x libgmp-dev:s390x
  libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x
  libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x
  libgnutlsxx28:s390x libgomp1:s390x libgomp1-s390x-cross libhogweed4:s390x
  libice-dev:s390x libice6 libice6:s390x libicu63 libidn2-0:s390x
  libidn2-dev:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross
  libjpeg62-turbo libjpeg62-turbo:s390x libllvm8:s390x liblocale-gettext-perl
  libmagic-mgc libmagic1 libmotif-common libmotif-dev:s390x libmrm4
  libmrm4:s390x libncurses6 libnettle6:s390x libopengl0:s390x
  libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x
  libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1
  libpng-dev:s390x libpng16-16 libpng16-16:s390x libpthread-stubs0-dev
  libpthread-stubs0-dev:s390x libsensors-config libsensors5:s390x libsigsegv2
  libsm-dev:s390x libsm6 libsm6:s390x libstdc++-9-dev:s390x
  libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross
  libsub-override-perl libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x
  libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuil4
  libuil4:s390x libunbound8:s390x libunistring2:s390x libuuid1:s390x
  libwayland-client0:s390x libwayland-server0:s390x libx11-6 libx11-6:s390x
  libx11-data libx11-dev libx11-dev:s390x libx11-xcb-dev:s390x
  libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x
  libxcb-dri2-0:s390x libxcb-dri2-0-dev:s390x libxcb-dri3-0:s390x
  libxcb-dri3-dev:s390x libxcb-glx0:s390x libxcb-glx0-dev:s390x
  libxcb-present-dev:s390x libxcb-present0:s390x libxcb-randr0:s390x
  libxcb-randr0-dev:s390x libxcb-render0:s390x libxcb-render0-dev:s390x
  libxcb-shape0:s390x libxcb-shape0-dev:s390x libxcb-sync-dev:s390x
  libxcb-sync1:s390x libxcb-xfixes0:s390x libxcb-xfixes0-dev:s390x libxcb1
  libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdamage-dev:s390x
  libxdamage1:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x
  libxext-dev:s390x libxext6 libxext6:s390x libxfixes-dev:s390x
  libxfixes3:s390x libxft-dev:s390x libxft2 libxft2:s390x libxm4 libxm4:s390x
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:s390x libxmu-headers
  libxmu6 libxmu6:s390x libxrender-dev:s390x libxrender1 libxrender1:s390x
  libxshmfence-dev:s390x libxshmfence1:s390x libxt-dev:s390x libxt6
  libxt6:s390x libxxf86vm-dev:s390x libxxf86vm1:s390x libyaml-perl
  linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db
  mesa-common-dev:s390x nettle-dev:s390x pkg-config po-debconf sensible-utils
  ucf uil uuid-dev:s390x x11-common x11proto-core-dev x11proto-damage-dev
  x11proto-dev x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev
  xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x
Suggested packages:
  autoconf-archive gnu-standards autoconf-doc binutils-doc wamerican
  | wordlist whois vacation gcc-9-locales cpp-doc dh-make binutils-multiarch
  g++-9-multilib-s390x-linux-gnu gcc-9-doc libstdc++6-9-dbg-s390x-cross
  gcc-9-multilib-s390x-linux-gnu libgcc1-dbg-s390x-cross
  libgomp1-dbg-s390x-cross libitm1-dbg-s390x-cross libatomic1-dbg-s390x-cross
  libasan5-dbg-s390x-cross liblsan0-dbg-s390x-cross libtsan0-dbg-s390x-cross
  libubsan1-dbg-s390x-cross libquadmath0-dbg-s390x-cross manpages-dev flex
  bison gdb-s390x-linux-gnu gcc-doc gettext-doc libasprintf-dev
  libgettextpo-dev groff glibc-doc:s390x libc-l10n:s390x locales:s390x
  manpages-dev:s390x freetype2-doc:s390x gmp-doc:s390x libgmp10-doc:s390x
  libmpfr-dev:s390x dns-root-data:s390x gnutls-bin:s390x gnutls-doc:s390x
  libice-doc:s390x lm-sensors lm-sensors:s390x libsm-doc:s390x
  libstdc++-9-doc:s390x libtool-doc gfortran | fortran95-compiler gcj-jdk
  libx11-doc libx11-doc:s390x libxcb-doc libxcb-doc:s390x libxext-doc:s390x
  libxt-doc:s390x libyaml-shell-perl m4-doc apparmor less www-browser
  libmail-box-perl
Recommended packages:
  curl | wget | lynx libarchive-cpio-perl libglib2.0-data shared-mime-info
  xdg-user-dirs libgpm2 libpng-tools:s390x libtasn1-doc:s390x libltdl-dev
  uuid-runtime:s390x libwww-perl libxml-sax-expat-perl libyaml-libyaml-perl
  | libyaml-syck-perl libmail-sendmail-perl
The following NEW packages will be installed:
  autoconf automake autopoint autotools-dev binutils-s390x-linux-gnu
  bsdmainutils cpp-9-s390x-linux-gnu cpp-s390x-linux-gnu cross-config
  crossbuild-essential-s390x csh debhelper dh-autoreconf
  dh-strip-nondeterminism dpkg-cross dwz file fontconfig-config
  fonts-dejavu-core g++-9-s390x-linux-gnu g++-s390x-linux-gnu gcc-9-base:s390x
  gcc-9-cross-base gcc-9-s390x-linux-gnu gcc-9-s390x-linux-gnu-base
  gcc-s390x-linux-gnu gettext gettext-base groff-base intltool-debian
  libarchive-zip-perl libasan5:s390x libasan5-s390x-cross libatomic1:s390x
  libatomic1-s390x-cross libbsd0 libbsd0:s390x libc6:s390x libc6-dev:s390x
  libc6-dev-s390x-cross libc6-s390x-cross libconfig-auto-perl
  libconfig-inifiles-perl libcroco3 libdebian-dpkgcross-perl
  libdrm-amdgpu1:s390x libdrm-common libdrm-dev:s390x libdrm-nouveau2:s390x
  libdrm-radeon1:s390x libdrm2:s390x libedit2:s390x libegl-mesa0:s390x
  libegl1:s390x libelf1 libelf1:s390x libevent-2.1-6:s390x libexpat1
  libexpat1:s390x libexpat1-dev:s390x libffi6:s390x libfile-homedir-perl
  libfile-stripnondeterminism-perl libfile-which-perl libfontconfig1
  libfontconfig1:s390x libfontconfig1-dev:s390x libfreetype6
  libfreetype6:s390x libfreetype6-dev:s390x libgbm1:s390x libgcc-9-dev:s390x
  libgcc-9-dev-s390x-cross libgcc1:s390x libgcc1-s390x-cross libgl1:s390x
  libgl1-mesa-dev:s390x libgl1-mesa-dri:s390x libglapi-mesa:s390x
  libgles1:s390x libgles2:s390x libglib2.0-0 libglu1-mesa:s390x
  libglu1-mesa-dev:s390x libglvnd-core-dev:s390x libglvnd-dev:s390x
  libglvnd0:s390x libglx-mesa0:s390x libglx0:s390x libgmp-dev:s390x
  libgmp10:s390x libgmpxx4ldbl:s390x libgnutls-dane0:s390x
  libgnutls-openssl27:s390x libgnutls28-dev:s390x libgnutls30:s390x
  libgnutlsxx28:s390x libgomp1:s390x libgomp1-s390x-cross libhogweed4:s390x
  libice-dev:s390x libice6 libice6:s390x libicu63 libidn2-0:s390x
  libidn2-dev:s390x libio-string-perl libitm1:s390x libitm1-s390x-cross
  libjpeg62-turbo libjpeg62-turbo:s390x libllvm8:s390x liblocale-gettext-perl
  libmagic-mgc libmagic1 libmotif-common libmotif-dev:s390x libmrm4
  libmrm4:s390x libncurses6 libnettle6:s390x libopengl0:s390x
  libp11-kit-dev:s390x libp11-kit0:s390x libpcre16-3:s390x libpcre3:s390x
  libpcre3-dev:s390x libpcre32-3:s390x libpcrecpp0v5:s390x libpipeline1
  libpng-dev:s390x libpng16-16 libpng16-16:s390x libpthread-stubs0-dev
  libpthread-stubs0-dev:s390x libsensors-config libsensors5:s390x libsigsegv2
  libsm-dev:s390x libsm6 libsm6:s390x libstdc++-9-dev:s390x
  libstdc++-9-dev-s390x-cross libstdc++6:s390x libstdc++6-s390x-cross
  libsub-override-perl libtasn1-6:s390x libtasn1-6-dev:s390x libtinfo6:s390x
  libtool libubsan1:s390x libubsan1-s390x-cross libuchardet0 libuil4
  libuil4:s390x libunbound8:s390x libunistring2:s390x libuuid1:s390x
  libwayland-client0:s390x libwayland-server0:s390x libx11-6 libx11-6:s390x
  libx11-data libx11-dev libx11-dev:s390x libx11-xcb-dev:s390x
  libx11-xcb1:s390x libxau-dev libxau-dev:s390x libxau6 libxau6:s390x
  libxcb-dri2-0:s390x libxcb-dri2-0-dev:s390x libxcb-dri3-0:s390x
  libxcb-dri3-dev:s390x libxcb-glx0:s390x libxcb-glx0-dev:s390x
  libxcb-present-dev:s390x libxcb-present0:s390x libxcb-randr0:s390x
  libxcb-randr0-dev:s390x libxcb-render0:s390x libxcb-render0-dev:s390x
  libxcb-shape0:s390x libxcb-shape0-dev:s390x libxcb-sync-dev:s390x
  libxcb-sync1:s390x libxcb-xfixes0:s390x libxcb-xfixes0-dev:s390x libxcb1
  libxcb1:s390x libxcb1-dev libxcb1-dev:s390x libxdamage-dev:s390x
  libxdamage1:s390x libxdmcp-dev libxdmcp-dev:s390x libxdmcp6 libxdmcp6:s390x
  libxext-dev:s390x libxext6 libxext6:s390x libxfixes-dev:s390x
  libxfixes3:s390x libxft-dev:s390x libxft2 libxft2:s390x libxm4 libxm4:s390x
  libxml-libxml-perl libxml-namespacesupport-perl libxml-sax-base-perl
  libxml-sax-perl libxml-simple-perl libxml2 libxmu-dev:s390x libxmu-headers
  libxmu6 libxmu6:s390x libxrender-dev:s390x libxrender1 libxrender1:s390x
  libxshmfence-dev:s390x libxshmfence1:s390x libxt-dev:s390x libxt6
  libxt6:s390x libxxf86vm-dev:s390x libxxf86vm1:s390x libyaml-perl
  linux-libc-dev:s390x linux-libc-dev-s390x-cross m4 man-db
  mesa-common-dev:s390x nettle-dev:s390x pkg-config po-debconf
  sbuild-build-depends-main-dummy:s390x sensible-utils ucf uil uuid-dev:s390x
  x11-common x11proto-core-dev x11proto-damage-dev x11proto-dev
  x11proto-fixes-dev x11proto-xext-dev x11proto-xf86vidmode-dev
  xorg-sgml-doctools xtrans-dev zlib1g:s390x zlib1g-dev:s390x
0 upgraded, 254 newly installed, 0 to remove and 0 not upgraded.
Need to get 111 MB of archives.
After this operation, 534 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-main-dummy 0.invalid.0 [952 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 libbsd0 amd64 0.10.0-1 [107 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 bsdmainutils amd64 11.1.2+b1 [191 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 libuchardet0 amd64 0.0.6-3 [64.9 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 groff-base amd64 1.22.4-3 [916 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libpipeline1 amd64 1.5.1-2 [31.2 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 man-db amd64 2.8.7-3 [1300 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 liblocale-gettext-perl amd64 1.07-3+b4 [18.9 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 x11-common all 1:7.7+19 [251 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libmotif-common all 2.3.8-2 [40.3 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main s390x gcc-9-base s390x 9.2.1-8 [193 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main s390x libgcc1 s390x 1:9.2.1-8 [24.3 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main s390x libc6 s390x 2.29-1 [2462 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main s390x libxau6 s390x 1:1.0.8-1+b2 [19.8 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main s390x libbsd0 s390x 0.10.0-1 [105 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp6 s390x 1:1.1.2-3 [26.5 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1 s390x 1.13.1-2 [134 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-data all 2:1.6.7-1 [298 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main s390x libx11-6 s390x 2:1.6.7-1 [722 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main s390x libexpat1 s390x 2.2.7-2 [87.5 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g s390x 1:1.2.11.dfsg-1+b1 [88.3 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main s390x libpng16-16 s390x 1.6.37-1 [286 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main s390x libfreetype6 s390x 2.9.1-4 [353 kB]
Get:24 http://debian.oregonstate.edu/debian unstable/main s390x libuuid1 s390x 2.34-0.1 [78.4 kB]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 sensible-utils all 0.0.12 [15.8 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 ucf all 3.0038+nmu1 [69.0 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 fonts-dejavu-core all 2.37-1 [1068 kB]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 fontconfig-config all 2.13.1-2 [280 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main s390x libfontconfig1 s390x 2.13.1-2+b1 [340 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main s390x libjpeg62-turbo s390x 1:1.5.2-2+b1 [131 kB]
Get:31 http://debian.oregonstate.edu/debian unstable/main s390x libxext6 s390x 2:1.3.3-1+b2 [51.7 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main s390x libxrender1 s390x 1:0.9.10-1 [32.0 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main s390x libxft2 s390x 2.3.2-2 [55.0 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main s390x libice6 s390x 2:1.0.9-2 [56.7 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main s390x libsm6 s390x 2:1.2.3-1 [34.2 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main s390x libxt6 s390x 1:1.1.5-1+b3 [174 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main s390x libxmu6 s390x 2:1.1.2-2+b3 [57.4 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main s390x libxm4 s390x 2.3.8-2 [948 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main s390x libmrm4 s390x 2.3.8-2 [85.9 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libxau6 amd64 1:1.0.8-1+b2 [19.9 kB]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp6 amd64 1:1.1.2-3 [26.3 kB]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1 amd64 1.13.1-2 [137 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-6 amd64 2:1.6.7-1 [754 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libexpat1 amd64 2.2.7-2 [92.7 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libpng16-16 amd64 1.6.37-1 [292 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libfreetype6 amd64 2.9.1-4 [379 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libfontconfig1 amd64 2.13.1-2+b1 [347 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libjpeg62-turbo amd64 1:1.5.2-2+b1 [134 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 libxext6 amd64 2:1.3.3-1+b2 [52.5 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libxrender1 amd64 1:0.9.10-1 [33.0 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libxft2 amd64 2.3.2-2 [57.2 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libice6 amd64 2:1.0.9-2 [58.7 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 libsm6 amd64 2:1.2.3-1 [35.1 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 libxt6 amd64 1:1.1.5-1+b3 [190 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu6 amd64 2:1.1.2-2+b3 [60.8 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libxm4 amd64 2.3.8-2 [1027 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libmrm4 amd64 2.3.8-2 [88.9 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main s390x libuil4 s390x 2.3.8-2 [152 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libuil4 amd64 2.3.8-2 [159 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic-mgc amd64 1:5.37-5 [253 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libmagic1 amd64 1:5.37-5 [119 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 file amd64 1:5.37-5 [67.1 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 gettext-base amd64 0.19.8.1-9 [123 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libsigsegv2 amd64 2.12-2 [32.8 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 m4 amd64 1.4.18-2 [203 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 autoconf all 2.69-11 [341 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 autotools-dev all 20180224.1 [77.0 kB]
Get:68 http://debian.oregonstate.edu/debian unstable/main amd64 automake all 1:1.16.1-4 [771 kB]
Get:69 http://debian.oregonstate.edu/debian unstable/main amd64 autopoint all 0.19.8.1-9 [434 kB]
Get:70 http://debian.oregonstate.edu/debian unstable/main amd64 binutils-s390x-linux-gnu amd64 2.32.51.20190909-1 [1917 kB]
Get:71 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu-base amd64 9.2.1-8cross1 [193 kB]
Get:72 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-9-s390x-linux-gnu amd64 9.2.1-8cross1 [6136 kB]
Get:73 http://debian.oregonstate.edu/debian unstable/main amd64 cpp-s390x-linux-gnu amd64 4:9.2.1-3.1 [16.7 kB]
Get:74 http://debian.oregonstate.edu/debian unstable/main amd64 cross-config all 2.6.15-3 [39.9 kB]
Get:75 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-cross-base all 9.2.1-8cross1 [188 kB]
Get:76 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-s390x-cross all 2.29-1cross7 [1257 kB]
Get:77 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc1-s390x-cross all 1:9.2.1-8cross1 [24.4 kB]
Get:78 http://debian.oregonstate.edu/debian unstable/main amd64 libgomp1-s390x-cross all 9.2.1-8cross1 [79.3 kB]
Get:79 http://debian.oregonstate.edu/debian unstable/main amd64 libitm1-s390x-cross all 9.2.1-8cross1 [26.3 kB]
Get:80 http://debian.oregonstate.edu/debian unstable/main amd64 libatomic1-s390x-cross all 9.2.1-8cross1 [8024 B]
Get:81 http://debian.oregonstate.edu/debian unstable/main amd64 libasan5-s390x-cross all 9.2.1-8cross1 [337 kB]
Get:82 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++6-s390x-cross all 9.2.1-8cross1 [449 kB]
Get:83 http://debian.oregonstate.edu/debian unstable/main amd64 libubsan1-s390x-cross all 9.2.1-8cross1 [119 kB]
Get:84 http://debian.oregonstate.edu/debian unstable/main amd64 libgcc-9-dev-s390x-cross all 9.2.1-8cross1 [682 kB]
Get:85 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-9-s390x-linux-gnu amd64 9.2.1-8cross1 [6495 kB]
Get:86 http://debian.oregonstate.edu/debian unstable/main amd64 gcc-s390x-linux-gnu amd64 4:9.2.1-3.1 [1456 B]
Get:87 http://debian.oregonstate.edu/debian unstable/main amd64 linux-libc-dev-s390x-cross all 5.2.9-2cross7 [1327 kB]
Get:88 http://debian.oregonstate.edu/debian unstable/main amd64 libc6-dev-s390x-cross all 2.29-1cross7 [2223 kB]
Get:89 http://debian.oregonstate.edu/debian unstable/main amd64 libstdc++-9-dev-s390x-cross all 9.2.1-8cross1 [1643 kB]
Get:90 http://debian.oregonstate.edu/debian unstable/main amd64 g++-9-s390x-linux-gnu amd64 9.2.1-8cross1 [6712 kB]
Get:91 http://debian.oregonstate.edu/debian unstable/main amd64 g++-s390x-linux-gnu amd64 4:9.2.1-3.1 [1176 B]
Get:92 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-inifiles-perl all 3.000001-1 [51.9 kB]
Get:93 http://debian.oregonstate.edu/debian unstable/main amd64 libio-string-perl all 1.08-3 [12.3 kB]
Get:94 http://debian.oregonstate.edu/debian unstable/main amd64 libicu63 amd64 63.2-2 [8301 kB]
Get:95 http://debian.oregonstate.edu/debian unstable/main amd64 libxml2 amd64 2.9.4+dfsg1-7+b3 [687 kB]
Get:96 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-namespacesupport-perl all 1.12-1 [14.8 kB]
Get:97 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-base-perl all 1.09-1 [20.4 kB]
Get:98 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-sax-perl all 1.02+dfsg-1 [59.0 kB]
Get:99 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-libxml-perl amd64 2.0134+dfsg-1 [344 kB]
Get:100 http://debian.oregonstate.edu/debian unstable/main amd64 libxml-simple-perl all 2.25-1 [72.0 kB]
Get:101 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-perl all 1.29-1 [67.4 kB]
Get:102 http://debian.oregonstate.edu/debian unstable/main amd64 libconfig-auto-perl all 0.44-1 [19.5 kB]
Get:103 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-which-perl all 1.23-1 [16.6 kB]
Get:104 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-homedir-perl all 1.004-1 [42.7 kB]
Get:105 http://debian.oregonstate.edu/debian unstable/main amd64 libdebian-dpkgcross-perl all 2.6.15-3 [38.7 kB]
Get:106 http://debian.oregonstate.edu/debian unstable/main amd64 dpkg-cross all 2.6.15-3 [49.3 kB]
Get:107 http://debian.oregonstate.edu/debian unstable/main amd64 crossbuild-essential-s390x all 12.8 [6636 B]
Get:108 http://debian.oregonstate.edu/debian unstable/main amd64 csh amd64 20110502-4+b1 [242 kB]
Get:109 http://debian.oregonstate.edu/debian unstable/main amd64 libtool all 2.4.6-11 [547 kB]
Get:110 http://debian.oregonstate.edu/debian unstable/main amd64 dh-autoreconf all 19 [16.9 kB]
Get:111 http://debian.oregonstate.edu/debian unstable/main amd64 libarchive-zip-perl all 1.65-1 [95.8 kB]
Get:112 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-override-perl all 0.09-2 [10.2 kB]
Get:113 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-stripnondeterminism-perl all 1.6.0-1 [23.3 kB]
Get:114 http://debian.oregonstate.edu/debian unstable/main amd64 dh-strip-nondeterminism all 1.6.0-1 [14.3 kB]
Get:115 http://debian.oregonstate.edu/debian unstable/main amd64 libelf1 amd64 0.176-1.1 [161 kB]
Get:116 http://debian.oregonstate.edu/debian unstable/main amd64 dwz amd64 0.13-1 [81.8 kB]
Get:117 http://debian.oregonstate.edu/debian unstable/main amd64 libglib2.0-0 amd64 2.60.6-2 [1295 kB]
Get:118 http://debian.oregonstate.edu/debian unstable/main amd64 libcroco3 amd64 0.6.13-1 [146 kB]
Get:119 http://debian.oregonstate.edu/debian unstable/main amd64 libncurses6 amd64 6.1+20190803-1 [102 kB]
Get:120 http://debian.oregonstate.edu/debian unstable/main amd64 gettext amd64 0.19.8.1-9 [1303 kB]
Get:121 http://debian.oregonstate.edu/debian unstable/main amd64 intltool-debian all 0.35.0+20060710.5 [26.8 kB]
Get:122 http://debian.oregonstate.edu/debian unstable/main amd64 po-debconf all 1.0.21 [248 kB]
Get:123 http://debian.oregonstate.edu/debian unstable/main amd64 debhelper all 12.5.4 [1035 kB]
Get:124 http://debian.oregonstate.edu/debian unstable/main s390x libasan5 s390x 9.2.1-8 [344 kB]
Get:125 http://debian.oregonstate.edu/debian unstable/main s390x libatomic1 s390x 9.2.1-8 [8104 B]
Get:126 http://debian.oregonstate.edu/debian unstable/main s390x linux-libc-dev s390x 5.2.9-2 [1232 kB]
Get:127 http://debian.oregonstate.edu/debian unstable/main s390x libc6-dev s390x 2.29-1 [2247 kB]
Get:128 http://debian.oregonstate.edu/debian unstable/main amd64 libdrm-common all 2.4.99-1 [13.9 kB]
Get:129 http://debian.oregonstate.edu/debian unstable/main s390x libdrm2 s390x 2.4.99-1 [38.3 kB]
Get:130 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-amdgpu1 s390x 2.4.99-1 [27.0 kB]
Get:131 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-radeon1 s390x 2.4.99-1 [30.1 kB]
Get:132 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-nouveau2 s390x 2.4.99-1 [25.3 kB]
Get:133 http://debian.oregonstate.edu/debian unstable/main s390x libdrm-dev s390x 2.4.99-1 [131 kB]
Get:134 http://debian.oregonstate.edu/debian unstable/main s390x libtinfo6 s390x 6.1+20190803-1 [327 kB]
Get:135 http://debian.oregonstate.edu/debian unstable/main s390x libedit2 s390x 3.1-20190324-1 [89.2 kB]
Get:136 http://debian.oregonstate.edu/debian unstable/main s390x libffi6 s390x 3.2.1-9 [18.9 kB]
Get:137 http://debian.oregonstate.edu/debian unstable/main s390x libwayland-server0 s390x 1.17.0-1 [31.0 kB]
Get:138 http://debian.oregonstate.edu/debian unstable/main s390x libgbm1 s390x 19.1.6-1 [68.0 kB]
Get:139 http://debian.oregonstate.edu/debian unstable/main s390x libglapi-mesa s390x 19.1.6-1 [84.1 kB]
Get:140 http://debian.oregonstate.edu/debian unstable/main s390x libwayland-client0 s390x 1.17.0-1 [25.3 kB]
Get:141 http://debian.oregonstate.edu/debian unstable/main s390x libx11-xcb1 s390x 2:1.6.7-1 [190 kB]
Get:142 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri2-0 s390x 1.13.1-2 [101 kB]
Get:143 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri3-0 s390x 1.13.1-2 [100 kB]
Get:144 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-present0 s390x 1.13.1-2 [99.0 kB]
Get:145 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-sync1 s390x 1.13.1-2 [102 kB]
Get:146 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-xfixes0 s390x 1.13.1-2 [103 kB]
Get:147 http://debian.oregonstate.edu/debian unstable/main s390x libxshmfence1 s390x 1.3-1 [8840 B]
Get:148 http://debian.oregonstate.edu/debian unstable/main s390x libegl-mesa0 s390x 19.1.6-1 [128 kB]
Get:149 http://debian.oregonstate.edu/debian unstable/main s390x libelf1 s390x 0.176-1.1 [157 kB]
Get:150 http://debian.oregonstate.edu/debian unstable/main s390x libevent-2.1-6 s390x 2.1.8-stable-4 [170 kB]
Get:151 http://debian.oregonstate.edu/debian unstable/main s390x libexpat1-dev s390x 2.2.7-2 [131 kB]
Get:152 http://debian.oregonstate.edu/debian unstable/main s390x zlib1g-dev s390x 1:1.2.11.dfsg-1+b1 [207 kB]
Get:153 http://debian.oregonstate.edu/debian unstable/main s390x libpng-dev s390x 1.6.37-1 [288 kB]
Get:154 http://debian.oregonstate.edu/debian unstable/main s390x libfreetype6-dev s390x 2.9.1-4 [518 kB]
Get:155 http://debian.oregonstate.edu/debian unstable/main s390x uuid-dev s390x 2.34-0.1 [93.8 kB]
Get:156 http://debian.oregonstate.edu/debian unstable/main amd64 pkg-config amd64 0.29-6 [63.5 kB]
Get:157 http://debian.oregonstate.edu/debian unstable/main s390x libfontconfig1-dev s390x 2.13.1-2+b1 [962 kB]
Get:158 http://debian.oregonstate.edu/debian unstable/main s390x libgomp1 s390x 9.2.1-8 [81.1 kB]
Get:159 http://debian.oregonstate.edu/debian unstable/main s390x libitm1 s390x 9.2.1-8 [26.7 kB]
Get:160 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++6 s390x 9.2.1-8 [490 kB]
Get:161 http://debian.oregonstate.edu/debian unstable/main s390x libubsan1 s390x 9.2.1-8 [120 kB]
Get:162 http://debian.oregonstate.edu/debian unstable/main s390x libgcc-9-dev s390x 9.2.1-8 [681 kB]
Get:163 http://debian.oregonstate.edu/debian unstable/main amd64 xorg-sgml-doctools all 1:1.11-1 [21.9 kB]
Get:164 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-dev all 2018.4-4 [251 kB]
Get:165 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-core-dev all 2018.4-4 [3128 B]
Get:166 http://debian.oregonstate.edu/debian unstable/main s390x libxau-dev s390x 1:1.0.8-1+b2 [23.1 kB]
Get:167 http://debian.oregonstate.edu/debian unstable/main s390x libxdmcp-dev s390x 1:1.1.2-3 [42.3 kB]
Get:168 http://debian.oregonstate.edu/debian unstable/main amd64 xtrans-dev all 1.3.5-1 [100 kB]
Get:169 http://debian.oregonstate.edu/debian unstable/main s390x libpthread-stubs0-dev s390x 0.4-1 [5344 B]
Get:170 http://debian.oregonstate.edu/debian unstable/main s390x libxcb1-dev s390x 1.13.1-2 [172 kB]
Get:171 http://debian.oregonstate.edu/debian unstable/main s390x libx11-dev s390x 2:1.6.7-1 [785 kB]
Get:172 http://debian.oregonstate.edu/debian unstable/main s390x mesa-common-dev s390x 19.1.6-1 [693 kB]
Get:173 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd0 s390x 1.1.0-1+b1 [83.7 kB]
Get:174 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd-core-dev s390x 1.1.0-1+b1 [13.5 kB]
Get:175 http://debian.oregonstate.edu/debian unstable/main s390x libegl1 s390x 1.1.0-1+b1 [31.7 kB]
Get:176 http://debian.oregonstate.edu/debian unstable/main s390x libgles1 s390x 1.1.0-1+b1 [15.4 kB]
Get:177 http://debian.oregonstate.edu/debian unstable/main s390x libgles2 s390x 1.1.0-1+b1 [24.1 kB]
Get:178 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-glx0 s390x 1.13.1-2 [116 kB]
Get:179 http://debian.oregonstate.edu/debian unstable/main s390x libxfixes3 s390x 1:5.0.3-1 [21.8 kB]
Get:180 http://debian.oregonstate.edu/debian unstable/main s390x libxdamage1 s390x 1:1.1.5-1 [15.4 kB]
Get:181 http://debian.oregonstate.edu/debian unstable/main s390x libxxf86vm1 s390x 1:1.1.4-1+b2 [20.4 kB]
Get:182 http://debian.oregonstate.edu/debian unstable/main s390x libllvm8 s390x 1:8.0.1-3+b1 [14.9 MB]
Get:183 http://debian.oregonstate.edu/debian unstable/main amd64 libsensors-config all 1:3.5.0-3 [31.6 kB]
Get:184 http://debian.oregonstate.edu/debian unstable/main s390x libsensors5 s390x 1:3.5.0-3 [51.2 kB]
Get:185 http://debian.oregonstate.edu/debian unstable/main s390x libgl1-mesa-dri s390x 19.1.6-1 [4895 kB]
Get:186 http://debian.oregonstate.edu/debian unstable/main s390x libglx-mesa0 s390x 19.1.6-1 [182 kB]
Get:187 http://debian.oregonstate.edu/debian unstable/main s390x libglx0 s390x 1.1.0-1+b1 [27.2 kB]
Get:188 http://debian.oregonstate.edu/debian unstable/main s390x libgl1 s390x 1.1.0-1+b1 [128 kB]
Get:189 http://debian.oregonstate.edu/debian unstable/main s390x libopengl0 s390x 1.1.0-1+b1 [46.1 kB]
Get:190 http://debian.oregonstate.edu/debian unstable/main s390x libglvnd-dev s390x 1.1.0-1+b1 [5404 B]
Get:191 http://debian.oregonstate.edu/debian unstable/main s390x libx11-xcb-dev s390x 2:1.6.7-1 [192 kB]
Get:192 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri3-dev s390x 1.13.1-2 [101 kB]
Get:193 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-randr0 s390x 1.13.1-2 [110 kB]
Get:194 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-render0 s390x 1.13.1-2 [109 kB]
Get:195 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-render0-dev s390x 1.13.1-2 [112 kB]
Get:196 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-randr0-dev s390x 1.13.1-2 [114 kB]
Get:197 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-shape0 s390x 1.13.1-2 [99.5 kB]
Get:198 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-shape0-dev s390x 1.13.1-2 [101 kB]
Get:199 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-xfixes0-dev s390x 1.13.1-2 [105 kB]
Get:200 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-sync-dev s390x 1.13.1-2 [104 kB]
Get:201 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-present-dev s390x 1.13.1-2 [101 kB]
Get:202 http://debian.oregonstate.edu/debian unstable/main s390x libxshmfence-dev s390x 1.3-1 [8360 B]
Get:203 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-dri2-0-dev s390x 1.13.1-2 [102 kB]
Get:204 http://debian.oregonstate.edu/debian unstable/main s390x libxcb-glx0-dev s390x 1.13.1-2 [122 kB]
Get:205 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-fixes-dev all 1:2018.4-4 [3140 B]
Get:206 http://debian.oregonstate.edu/debian unstable/main s390x libxfixes-dev s390x 1:5.0.3-1 [23.7 kB]
Get:207 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-damage-dev all 1:2018.4-4 [3140 B]
Get:208 http://debian.oregonstate.edu/debian unstable/main s390x libxdamage-dev s390x 1:1.1.5-1 [15.3 kB]
Get:209 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xext-dev all 2018.4-4 [3128 B]
Get:210 http://debian.oregonstate.edu/debian unstable/main s390x libxext-dev s390x 2:1.3.3-1+b2 [106 kB]
Get:211 http://debian.oregonstate.edu/debian unstable/main amd64 x11proto-xf86vidmode-dev all 2018.4-4 [3140 B]
Get:212 http://debian.oregonstate.edu/debian unstable/main s390x libxxf86vm-dev s390x 1:1.1.4-1+b2 [25.0 kB]
Get:213 http://debian.oregonstate.edu/debian unstable/main s390x libgl1-mesa-dev s390x 19.1.6-1 [48.6 kB]
Get:214 http://debian.oregonstate.edu/debian unstable/main s390x libglu1-mesa s390x 9.0.0-2.1+b3 [153 kB]
Get:215 http://debian.oregonstate.edu/debian unstable/main s390x libglu1-mesa-dev s390x 9.0.0-2.1+b3 [190 kB]
Get:216 http://debian.oregonstate.edu/debian unstable/main s390x libgmp10 s390x 2:6.1.2+dfsg-4 [238 kB]
Get:217 http://debian.oregonstate.edu/debian unstable/main s390x libgmpxx4ldbl s390x 2:6.1.2+dfsg-4 [22.6 kB]
Get:218 http://debian.oregonstate.edu/debian unstable/main s390x libgmp-dev s390x 2:6.1.2+dfsg-4 [617 kB]
Get:219 http://debian.oregonstate.edu/debian unstable/main s390x libnettle6 s390x 3.5.1+really3.4.1-1 [224 kB]
Get:220 http://debian.oregonstate.edu/debian unstable/main s390x libhogweed4 s390x 3.5.1+really3.4.1-1 [139 kB]
Get:221 http://debian.oregonstate.edu/debian unstable/main s390x libunistring2 s390x 0.9.10-2 [367 kB]
Get:222 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-0 s390x 2.2.0-2 [81.4 kB]
Get:223 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit0 s390x 0.23.16.1-2 [315 kB]
Get:224 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6 s390x 4.14-3 [51.3 kB]
Get:225 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls30 s390x 3.6.9-5 [1058 kB]
Get:226 http://debian.oregonstate.edu/debian unstable/main s390x libunbound8 s390x 1.9.3-1+b1 [432 kB]
Get:227 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-dane0 s390x 3.6.9-5 [331 kB]
Get:228 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls-openssl27 s390x 3.6.9-5 [331 kB]
Get:229 http://debian.oregonstate.edu/debian unstable/main s390x libgnutlsxx28 s390x 3.6.9-5 [13.9 kB]
Get:230 http://debian.oregonstate.edu/debian unstable/main s390x libidn2-dev s390x 2.2.0-2 [83.6 kB]
Get:231 http://debian.oregonstate.edu/debian unstable/main s390x libp11-kit-dev s390x 0.23.16.1-2 [196 kB]
Get:232 http://debian.oregonstate.edu/debian unstable/main s390x libtasn1-6-dev s390x 4.14-3 [105 kB]
Get:233 http://debian.oregonstate.edu/debian unstable/main s390x nettle-dev s390x 3.5.1+really3.4.1-1 [1085 kB]
Get:234 http://debian.oregonstate.edu/debian unstable/main s390x libgnutls28-dev s390x 3.6.9-5 [1012 kB]
Get:235 http://debian.oregonstate.edu/debian unstable/main s390x libice-dev s390x 2:1.0.9-2 [65.4 kB]
Get:236 http://debian.oregonstate.edu/debian unstable/main s390x libxrender-dev s390x 1:0.9.10-1 [39.9 kB]
Get:237 http://debian.oregonstate.edu/debian unstable/main s390x libxft-dev s390x 2.3.2-2 [66.6 kB]
Get:238 http://debian.oregonstate.edu/debian unstable/main s390x libsm-dev s390x 2:1.2.3-1 [37.2 kB]
Get:239 http://debian.oregonstate.edu/debian unstable/main s390x libxt-dev s390x 1:1.1.5-1+b3 [413 kB]
Get:240 http://debian.oregonstate.edu/debian unstable/main amd64 uil amd64 2.3.8-2 [38.5 kB]
Get:241 http://debian.oregonstate.edu/debian unstable/main s390x libmotif-dev s390x 2.3.8-2 [2399 kB]
Get:242 http://debian.oregonstate.edu/debian unstable/main s390x libpcre16-3 s390x 2:8.39-12+b1 [188 kB]
Get:243 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3 s390x 2:8.39-12+b1 [262 kB]
Get:244 http://debian.oregonstate.edu/debian unstable/main s390x libpcre32-3 s390x 2:8.39-12+b1 [183 kB]
Get:245 http://debian.oregonstate.edu/debian unstable/main s390x libpcrecpp0v5 s390x 2:8.39-12+b1 [151 kB]
Get:246 http://debian.oregonstate.edu/debian unstable/main s390x libpcre3-dev s390x 2:8.39-12+b1 [480 kB]
Get:247 http://debian.oregonstate.edu/debian unstable/main amd64 libpthread-stubs0-dev amd64 0.4-1 [5344 B]
Get:248 http://debian.oregonstate.edu/debian unstable/main s390x libstdc++-9-dev s390x 9.2.1-8 [1656 kB]
Get:249 http://debian.oregonstate.edu/debian unstable/main amd64 libxau-dev amd64 1:1.0.8-1+b2 [23.1 kB]
Get:250 http://debian.oregonstate.edu/debian unstable/main amd64 libxdmcp-dev amd64 1:1.1.2-3 [42.2 kB]
Get:251 http://debian.oregonstate.edu/debian unstable/main amd64 libxcb1-dev amd64 1.13.1-2 [174 kB]
Get:252 http://debian.oregonstate.edu/debian unstable/main amd64 libx11-dev amd64 2:1.6.7-1 [827 kB]
Get:253 http://debian.oregonstate.edu/debian unstable/main amd64 libxmu-headers all 2:1.1.2-2 [51.9 kB]
Get:254 http://debian.oregonstate.edu/debian unstable/main s390x libxmu-dev s390x 2:1.1.2-2+b3 [63.4 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up x11-common (1:7.7+19) ...
update-rc.d: warning: start and stop actions are no longer supported; falling back to defaults
invoke-rc.d: could not determine current runlevel
All runlevel operations denied by policy
invoke-rc.d: policy-rc.d denied execution of start.
Selecting previously unselected package libmotif-common.
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Setting up libgles2:s390x (1.1.0-1+b1) ...
Setting up libexpat1-dev:s390x (2.2.7-2) ...
Setting up libjpeg62-turbo:s390x (1:1.5.2-2+b1) ...
Setting up libxcb-sync1:s390x (1.13.1-2) ...
Setting up libgmp10:s390x (2:6.1.2+dfsg-4) ...
Setting up libgles1:s390x (1.1.0-1+b1) ...
Setting up libp11-kit0:s390x (0.23.16.1-2) ...
Setting up libpng16-16:s390x (1.6.37-1) ...
Setting up libpcre32-3:s390x (2:8.39-12+b1) ...
Setting up libatomic1:s390x (9.2.1-8) ...
Setting up libuuid1:s390x (2.34-0.1) ...
Setting up libsensors5:s390x (1:3.5.0-3) ...
Setting up libnettle6:s390x (3.5.1+really3.4.1-1) ...
Setting up libidn2-dev:s390x (2.2.0-2) ...
Setting up libglapi-mesa:s390x (19.1.6-1) ...
Setting up libevent-2.1-6:s390x (2.1.8-stable-4) ...
Setting up libxcb-dri2-0:s390x (1.13.1-2) ...
Setting up dh-strip-nondeterminism (1.6.0-1) ...
Setting up zlib1g-dev:s390x (1:1.2.11.dfsg-1+b1) ...
Setting up libxcb-randr0:s390x (1.13.1-2) ...
Setting up libx11-6:s390x (2:1.6.7-1) ...
Setting up libelf1:s390x (0.176-1.1) ...
Setting up libsm6:s390x (2:1.2.3-1) ...
Setting up libstdc++6:s390x (9.2.1-8) ...
Setting up libp11-kit-dev:s390x (0.23.16.1-2) ...
Setting up libwayland-client0:s390x (1.17.0-1) ...
Setting up libllvm8:s390x (1:8.0.1-3+b1) ...
Setting up libpcrecpp0v5:s390x (2:8.39-12+b1) ...
Setting up libxcb-dri3-0:s390x (1.13.1-2) ...
Setting up libwayland-server0:s390x (1.17.0-1) ...
Setting up libdrm-dev:s390x (2.4.99-1) ...
Setting up libxcb1-dev:s390x (1.13.1-2) ...
Setting up libxrender1:s390x (1:0.9.10-1) ...
Setting up libgbm1:s390x (19.1.6-1) ...
Setting up libsm-dev:s390x (2:1.2.3-1) ...
Setting up libpcre3-dev:s390x (2:8.39-12+b1) ...
Setting up libhogweed4:s390x (3.5.1+really3.4.1-1) ...
Setting up libgl1-mesa-dri:s390x (19.1.6-1) ...
Setting up libpng-dev:s390x (1.6.37-1) ...
Setting up libx11-dev:s390x (2:1.6.7-1) ...
Setting up libxext6:s390x (2:1.3.3-1+b2) ...
Setting up libxcb-dri3-dev:s390x (1.13.1-2) ...
Setting up libxxf86vm1:s390x (1:1.1.4-1+b2) ...
Setting up libegl-mesa0:s390x (19.1.6-1) ...
Setting up libxcb-dri2-0-dev:s390x (1.13.1-2) ...
Setting up libunbound8:s390x (1.9.3-1+b1) ...
Setting up libgnutls30:s390x (3.6.9-5) ...
Setting up libgmpxx4ldbl:s390x (2:6.1.2+dfsg-4) ...
Setting up libfreetype6:s390x (2.9.1-4) ...
Setting up libxfixes3:s390x (1:5.0.3-1) ...
Setting up uuid-dev:s390x (2.34-0.1) ...
Setting up libgnutlsxx28:s390x (3.6.9-5) ...
Setting up libxcb-render0-dev:s390x (1.13.1-2) ...
Setting up libxcb-glx0-dev:s390x (1.13.1-2) ...
Setting up libxt6:s390x (1:1.1.5-1+b3) ...
Setting up libxcb-shape0-dev:s390x (1.13.1-2) ...
Setting up libxext-dev:s390x (2:1.3.3-1+b2) ...
Setting up libubsan1:s390x (9.2.1-8) ...
Setting up libegl1:s390x (1.1.0-1+b1) ...
Setting up libxcb-sync-dev:s390x (1.13.1-2) ...
Setting up mesa-common-dev:s390x (19.1.6-1) ...
Setting up libxcb-xfixes0-dev:s390x (1.13.1-2) ...
Setting up libfontconfig1:s390x (2.13.1-2+b1) ...
Setting up libxrender-dev:s390x (1:0.9.10-1) ...
Setting up libx11-xcb-dev:s390x (2:1.6.7-1) ...
Setting up libgnutls-dane0:s390x (3.6.9-5) ...
Setting up libxft2:s390x (2.3.2-2) ...
Setting up libxmu6:s390x (2:1.1.2-2+b3) ...
Setting up libgnutls-openssl27:s390x (3.6.9-5) ...
Setting up libxdamage1:s390x (1:1.1.5-1) ...
Setting up libgmp-dev:s390x (2:6.1.2+dfsg-4) ...
Setting up nettle-dev:s390x (3.5.1+really3.4.1-1) ...
Setting up libxxf86vm-dev:s390x (1:1.1.4-1+b2) ...
Setting up libfreetype6-dev:s390x (2.9.1-4) ...
Setting up libxfixes-dev:s390x (1:5.0.3-1) ...
Setting up libgcc-9-dev:s390x (9.2.1-8) ...
Setting up libxcb-randr0-dev:s390x (1.13.1-2) ...
Setting up libxt-dev:s390x (1:1.1.5-1+b3) ...
Setting up libxcb-present-dev:s390x (1.13.1-2) ...
Setting up libxm4:s390x (2.3.8-2) ...
Setting up libxdamage-dev:s390x (1:1.1.5-1) ...
Setting up libgnutls28-dev:s390x (3.6.9-5) ...
Setting up libfontconfig1-dev:s390x (2.13.1-2+b1) ...
Setting up libglx-mesa0:s390x (19.1.6-1) ...
Setting up libstdc++-9-dev:s390x (9.2.1-8) ...
Setting up libglx0:s390x (1.1.0-1+b1) ...
Setting up libxmu-dev:s390x (2:1.1.2-2+b3) ...
Setting up libgl1:s390x (1.1.0-1+b1) ...
Setting up libmrm4:s390x (2.3.8-2) ...
Setting up libuil4:s390x (2.3.8-2) ...
Setting up libglu1-mesa:s390x (9.0.0-2.1+b3) ...
Setting up libxft-dev:s390x (2.3.2-2) ...
Setting up libglvnd-dev:s390x (1.1.0-1+b1) ...
Setting up libgl1-mesa-dev:s390x (19.1.6-1) ...
Setting up libmotif-dev:s390x (2.3.8-2) ...
Setting up libglu1-mesa-dev:s390x (9.0.0-2.1+b3) ...
Setting up sbuild-build-depends-main-dummy:s390x (0.invalid.0) ...
Processing triggers for libc-bin (2.29-1) ...

+------------------------------------------------------------------------------+
| Check architectures                                                          |
+------------------------------------------------------------------------------+

Arch check ok (s390x included in any all)

+------------------------------------------------------------------------------+
| Build environment                                                            |
+------------------------------------------------------------------------------+

Kernel: Linux 4.9.0-8-amd64 #1 SMP Debian 4.9.144-3.1 (2019-02-19) amd64 (x86_64)
Toolchain package versions: binutils_2.32.51.20190909-1 dpkg-dev_1.19.7 g++-8_8.3.0-22 g++-9_9.2.1-8 gcc-8_8.3.0-22 gcc-9_9.2.1-8 libc6-dev_2.29-1 libstdc++-8-dev_8.3.0-22 libstdc++-9-dev_9.2.1-8 libstdc++-9-dev-s390x-cross_9.2.1-8cross1 libstdc++6_9.2.1-8 libstdc++6-s390x-cross_9.2.1-8cross1 linux-libc-dev_5.2.9-2
Package versions: adduser_3.118 apt_1.8.3 autoconf_2.69-11 automake_1:1.16.1-4 autopoint_0.19.8.1-9 autotools-dev_20180224.1 base-files_11 base-passwd_3.5.46 bash_5.0-4 binutils_2.32.51.20190909-1 binutils-common_2.32.51.20190909-1 binutils-s390x-linux-gnu_2.32.51.20190909-1 binutils-x86-64-linux-gnu_2.32.51.20190909-1 bsdmainutils_11.1.2+b1 bsdutils_1:2.34-0.1 build-essential_12.8 bzip2_1.0.8-2 coreutils_8.30-3+b1 cpp_4:9.2.1-3.1 cpp-8_8.3.0-22 cpp-9_9.2.1-8 cpp-9-s390x-linux-gnu_9.2.1-8cross1 cpp-s390x-linux-gnu_4:9.2.1-3.1 cross-config_2.6.15-3 crossbuild-essential-s390x_12.8 csh_20110502-4+b1 dash_0.5.10.2-6 debconf_1.5.73 debhelper_12.5.4 debian-archive-keyring_2019.1 debianutils_4.9 dh-autoreconf_19 dh-strip-nondeterminism_1.6.0-1 diffutils_1:3.7-3 dpkg_1.19.7 dpkg-cross_2.6.15-3 dpkg-dev_1.19.7 dwz_0.13-1 e2fsprogs_1.45.3-4 fakeroot_1.24-1 fdisk_2.34-0.1 file_1:5.37-5 findutils_4.7.0-1 fontconfig-config_2.13.1-2 fonts-dejavu-core_2.37-1 g++_4:9.2.1-3.1 g++-8_8.3.0-22 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libconfig-auto-perl_0.44-1 libconfig-inifiles-perl_3.000001-1 libcroco3_0.6.13-1 libdb5.3_5.3.28+dfsg1-0.6 libdebconfclient0_0.249 libdebian-dpkgcross-perl_2.6.15-3 libdpkg-perl_1.19.7 libdrm-amdgpu1_2.4.99-1 libdrm-common_2.4.99-1 libdrm-dev_2.4.99-1 libdrm-nouveau2_2.4.99-1 libdrm-radeon1_2.4.99-1 libdrm2_2.4.99-1 libedit2_3.1-20190324-1 libegl-mesa0_19.1.6-1 libegl1_1.1.0-1+b1 libelf1_0.176-1.1 libevent-2.1-6_2.1.8-stable-4 libexpat1_2.2.7-2 libexpat1-dev_2.2.7-2 libext2fs2_1.45.3-4 libfakeroot_1.24-1 libfdisk1_2.34-0.1 libffi6_3.2.1-9 libfile-homedir-perl_1.004-1 libfile-stripnondeterminism-perl_1.6.0-1 libfile-which-perl_1.23-1 libfontconfig1_2.13.1-2+b1 libfontconfig1-dev_2.13.1-2+b1 libfreetype6_2.9.1-4 libfreetype6-dev_2.9.1-4 libgbm1_19.1.6-1 libgcc-8-dev_8.3.0-22 libgcc-9-dev_9.2.1-8 libgcc-9-dev-s390x-cross_9.2.1-8cross1 libgcc1_1:9.2.1-8 libgcc1-s390x-cross_1:9.2.1-8cross1 libgcrypt20_1.8.5-2 libgdbm-compat4_1.18.1-5 libgdbm6_1.18.1-5 libgl1_1.1.0-1+b1 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libstdc++6_9.2.1-8 libstdc++6-s390x-cross_9.2.1-8cross1 libsub-override-perl_0.09-2 libsystemd0_242-7 libtasn1-6_4.14-3 libtasn1-6-dev_4.14-3 libtinfo6_6.1+20190803-1 libtool_2.4.6-11 libtsan0_9.2.1-8 libubsan1_9.2.1-8 libubsan1-s390x-cross_9.2.1-8cross1 libuchardet0_0.0.6-3 libudev1_242-7 libuil4_2.3.8-2 libunbound8_1.9.3-1+b1 libunistring2_0.9.10-2 libuuid1_2.34-0.1 libwayland-client0_1.17.0-1 libwayland-server0_1.17.0-1 libx11-6_2:1.6.7-1 libx11-data_2:1.6.7-1 libx11-dev_2:1.6.7-1 libx11-xcb-dev_2:1.6.7-1 libx11-xcb1_2:1.6.7-1 libxau-dev_1:1.0.8-1+b2 libxau6_1:1.0.8-1+b2 libxcb-dri2-0_1.13.1-2 libxcb-dri2-0-dev_1.13.1-2 libxcb-dri3-0_1.13.1-2 libxcb-dri3-dev_1.13.1-2 libxcb-glx0_1.13.1-2 libxcb-glx0-dev_1.13.1-2 libxcb-present-dev_1.13.1-2 libxcb-present0_1.13.1-2 libxcb-randr0_1.13.1-2 libxcb-randr0-dev_1.13.1-2 libxcb-render0_1.13.1-2 libxcb-render0-dev_1.13.1-2 libxcb-shape0_1.13.1-2 libxcb-shape0-dev_1.13.1-2 libxcb-sync-dev_1.13.1-2 libxcb-sync1_1.13.1-2 libxcb-xfixes0_1.13.1-2 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ncurses-base_6.1+20190803-1 ncurses-bin_6.1+20190803-1 nettle-dev_3.5.1+really3.4.1-1 passwd_1:4.7-2 patch_2.7.6-6 perl_5.28.1-6 perl-base_5.28.1-6 perl-modules-5.28_5.28.1-6 pkg-config_0.29-6 po-debconf_1.0.21 sbuild-build-depends-main-dummy_0.invalid.0 sed_4.7-1 sensible-utils_0.0.12 sysvinit-utils_2.96~beta-1 tar_1.30+dfsg-6+b1 tzdata_2019c-1 ucf_3.0038+nmu1 uil_2.3.8-2 util-linux_2.34-0.1 uuid-dev_2.34-0.1 x11-common_1:7.7+19 x11proto-core-dev_2018.4-4 x11proto-damage-dev_1:2018.4-4 x11proto-dev_2018.4-4 x11proto-fixes-dev_1:2018.4-4 x11proto-xext-dev_2018.4-4 x11proto-xf86vidmode-dev_2018.4-4 xorg-sgml-doctools_1:1.11-1 xtrans-dev_1.3.5-1 xz-utils_5.2.4-1+b1 zlib1g_1:1.2.11.dfsg-1+b1 zlib1g-dev_1:1.2.11.dfsg-1+b1

+------------------------------------------------------------------------------+
| Build                                                                        |
+------------------------------------------------------------------------------+


Unpack source
-------------

-----BEGIN PGP SIGNED MESSAGE-----
Hash: SHA256

Format: 3.0 (quilt)
Source: ncbi-tools6
Binary: libncbi6, libncbi6-dev, ncbi-data, ncbi-rrna-data, ncbi-tools-bin, ncbi-tools-x11, ncbi-cn3d, libvibrant6b, libvibrant6-dev
Architecture: any all
Version: 6.1.20170106+dfsg1-7
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Uploaders: Aaron M. Ucko <ucko@debian.org>
Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
Standards-Version: 4.3.0
Vcs-Browser: https://salsa.debian.org/med-team/ncbi-tools6
Vcs-Git: https://salsa.debian.org/med-team/ncbi-tools6.git
Testsuite: autopkgtest
Testsuite-Triggers: netcat
Build-Depends: debhelper (>= 11~)
Build-Depends-Arch: csh | c-shell, libglu1-mesa-dev | libglu-dev, libgnutls28-dev | gnutls-dev, libmotif-dev, libpcre3-dev, libpng-dev, libxmu-dev
Build-Depends-Indep: icoutils, imagemagick
Package-List:
 libncbi6 deb libs optional arch=any
 libncbi6-dev deb libdevel optional arch=any
 libvibrant6-dev deb libdevel optional arch=any
 libvibrant6b deb libs optional arch=any
 ncbi-cn3d deb science optional arch=any
 ncbi-data deb libs optional arch=all
 ncbi-rrna-data deb science optional arch=all
 ncbi-tools-bin deb science optional arch=any
 ncbi-tools-x11 deb science optional arch=any
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 b0786fc1fe33fd939f76605beb70113558edf090 1512328 ncbi-tools6_6.1.20170106+dfsg1-7.debian.tar.xz
Checksums-Sha256:
 af7f6f6f75601d1676db015d188309afb2604f427e76ac83990be0c44007ea17 58331860 ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz
 316506640b8dc99dd47d5e784a17cdd3bb9e51d7037244d239a0e2ddf8ee9f88 1512328 ncbi-tools6_6.1.20170106+dfsg1-7.debian.tar.xz
Files:
 0c2d79e2d06a42882d22265d560a9732 58331860 ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz
 79c41bc0b1bf3595787e329033d0b6fd 1512328 ncbi-tools6_6.1.20170106+dfsg1-7.debian.tar.xz
Dgit: c16c0f8f79ab208cddd0cb8deac6fe3a9a92bc2e debian archive/debian/6.1.20170106+dfsg1-7 https://git.dgit.debian.org/ncbi-tools6

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gpgv: unknown type of key resource 'trustedkeys.kbx'
gpgv: keyblock resource '/sbuild-nonexistent/.gnupg/trustedkeys.kbx': General error
gpgv: Signature made Sun Sep 15 00:59:21 2019 UTC
gpgv:                using RSA key 7C3AB9CFD230BD30DD009C591E7091B1F14A64A2
gpgv: Can't check signature: No public key
dpkg-source: warning: failed to verify signature on ./ncbi-tools6_6.1.20170106+dfsg1-7.dsc
dpkg-source: info: extracting ncbi-tools6 in /<<PKGBUILDDIR>>
dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1.orig.tar.xz
dpkg-source: info: unpacking ncbi-tools6_6.1.20170106+dfsg1-7.debian.tar.xz
dpkg-source: info: using patch list from debian/patches/series
dpkg-source: info: applying debian-changes

Check disk space
----------------

Sufficient free space for build

User Environment
----------------

APT_CONFIG=/var/lib/sbuild/apt.conf
CONFIG_SITE=/etc/dpkg-cross/cross-config.s390x
DEB_BUILD_OPTIONS=nocheck
HOME=/sbuild-nonexistent
LANG=en_US.UTF-8
LC_ALL=C.UTF-8
LOGNAME=helmut
PATH=/usr/local/sbin:/usr/local/bin:/usr/sbin:/usr/bin:/sbin:/bin:/usr/games
SCHROOT_ALIAS_NAME=unstable-amd64-sbuild
SCHROOT_CHROOT_NAME=unstable-amd64-sbuild
SCHROOT_COMMAND=env
SCHROOT_GID=1003
SCHROOT_GROUP=helmut
SCHROOT_SESSION_ID=unstable-amd64-sbuild-11feff35-64dc-4c0f-b0ab-427c286c4ceb
SCHROOT_UID=1003
SCHROOT_USER=helmut
SHELL=/bin/sh
USER=helmut

dpkg-buildpackage
-----------------

Command: dpkg-buildpackage -as390x -Pcross,nocheck -us -uc -B -rfakeroot --jobs-try=1
dpkg-buildpackage: info: source package ncbi-tools6
dpkg-buildpackage: info: source version 6.1.20170106+dfsg1-7
dpkg-buildpackage: info: source distribution unstable
dpkg-buildpackage: info: source changed by Aaron M. Ucko <ucko@debian.org>
dpkg-architecture: warning: specified GNU system type s390x-linux-gnu does not match CC system type x86_64-linux-gnu, try setting a correct CC environment variable
 dpkg-source --before-build .
dpkg-buildpackage: info: host architecture s390x
dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch
 debian/rules clean
dh clean
   debian/rules override_dh_auto_clean
make[1]: Entering directory '/<<PKGBUILDDIR>>'
rm -rf build/* bin/* include/* lib/* shlib
mkdir -p build bin include lib
rm -f debian/*.menu debian/asntool.xpm debian/ncbilogo.xpm
chmod -x debian/makemenu debian/installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_clean
 debian/rules binary-arch
dh binary-arch
   dh_update_autotools_config -a
   dh_autoreconf -a
   debian/rules override_dh_auto_build-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
cd build && ln -s ../make/*.unx .
ln -s ../make/ln-if-absent build
mv build/makeall.unx build/makefile
/usr/bin/make -C build all LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG" \
    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbos.h .
./ln-if-absent ../connect/ncbi_lbosp.h .
./ln-if-absent ../connect/parson.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [makefile:714: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [makefile:715: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [makefile:771: copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [makefile:772: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [makefile:773: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [makefile:774: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [makefile:775: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [makefile:776: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [makefile:777: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [makefile:778: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [makefile:779: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [makefile:780: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [makefile:781: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [makefile:782: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [makefile:783: copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
	../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithr.c:289:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithr.c: In function ‘s_TlsDestroyAll’:
ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
cp -p ncbithr.o ../lib
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimain.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
   82 | main(int argc, char *argv[])
      | ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbibs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbibs.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbibs.c: In function ‘Nlm_BSSeek’:
ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  448 |     if (sp == bsp->seekptr)     /* already in right position */
      |     ^~
ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  451 |  bsp->seekptr = sp;
      |  ^~~
In file included from ../include/ncbierr.h:105,
                 from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbibs.c:55:
ncbibs.c: In function ‘Nlm_BSGetUint2’:
../include/ncbimisc.h:345:31: warning: statement with no effect [-Wunused-value]
  345 | #define Nlm_SwapUint2(value)  (value)
      |                               ^
ncbibs.c:937:2: note: in expansion of macro ‘Nlm_SwapUint2’
  937 |  Nlm_SwapUint2(retval);
      |  ^~~~~~~~~~~~~
ncbibs.c: In function ‘Nlm_BSGetUint4’:
../include/ncbimisc.h:349:31: warning: statement with no effect [-Wunused-value]
  349 | #define Nlm_SwapUint4(value)  (value)
      |                               ^
ncbibs.c:947:2: note: in expansion of macro ‘Nlm_SwapUint4’
  947 |  Nlm_SwapUint4(retval);
      |  ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wwwutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbiwww.h:106,
                 from wwwutils.c:150:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbierr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
In function ‘strncat’,
    inlined from ‘ErrMsgRoot_fopen.isra.0’ at ncbierr.c:955:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbienv.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:464:36: note: in expansion of macro ‘StrLen’
  464 |           Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1;
      |                                    ^~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_TransientLookup’ at ncbienv.c:1788:15,
    inlined from ‘Nlm_TransientLookup’ at ncbienv.c:1761:20:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_TransientLookup’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’
 1786 |               bytesToAppend = StrLen(eip->name) + 1;
      |                               ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbifile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbifile.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbiprop.c:104:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimath.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbimath.h:69,
                 from ncbimath.c:90:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimath.c: In function ‘general_lngamma’:
ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  ++y[0];
      |    ~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimem.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimem.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimisc.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimisc.c: In function ‘Nlm_MD5Final’:
ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
 2250 |     memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
      |                          ^
ncbimisc.c: In function ‘XmlPathSuffixIs’:
ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2966 |     if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
      |                                           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbimsg.c:167:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbistr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbistr.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbitime.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbitime.c:77:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbilang.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbilang.c:57:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnbufo.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnbufo.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asndebin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asndebin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndebin.c: In function ‘AsnBinReadVal’:
asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  565 |     else
      |     ^~~~
asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  568 |  if (atp == NULL)
      |  ^~
asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  634 |             else                     /* empty sequence written */
      |             ^~~~
asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  636 |       while (atp2 != NULL)
      |       ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnenbin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnenbin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asngen.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asngen.c: In function ‘AsnFindNthPieceOfObject’:
asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable]
  540 |   AsnExpOptPtr aeop;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnio.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnio.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnio.c: In function ‘AsnIoWriteBlock’:
asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  698 |     else                    /* use alternative write function */
      |     ^~~~
asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  701 |  if (retval != bytes_to_write)
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlex.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlex.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnlex.c: In function ‘AsnTxtReadId’:
asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE)))
      |     ^~
asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |  if (token != IDENT)
      |  ^~
asnlex.c: In function ‘AsnTxtReadVal’:
asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  345 |             else                     /* empty sequence written */
      |             ^~~~
asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  347 |       while (atp2 != NULL)
      |       ^~~~~
At top level:
asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function]
 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
      |             ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnlext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlext.c:57:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnout.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnout.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnout.c: In function ‘AsnOutput’:
asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  159 |     else
      |     ^~~~
asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  162 |  for (i = 0; i < 12; i++)
      |  ^~~
asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  213 |         if (! loader)
      |         ^~
asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  216 |   attvp = p.root_tmpvalue.next;
      |   ^~~~~
asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  270 |     if (! loader)
      |     ^~
asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |  attp = p.root_tmptype.next;
      |  ^~~~
asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  450 |     if (! loader)
      |     ^~
asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  453 |  i = 1;
      |  ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asnprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnprint.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnprint.c: In function ‘GetXMLModuleName’:
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
  102 |  for (currmod; currmod != NULL; currmod = currmod->next)
      |  ^~~
asnprint.c: In function ‘AsnPrintCloseStruct’:
asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable]
 1774 |  Int2 isa;
      |       ^~~
asnprint.c: In function ‘AsnPrintModuleXMLInc’:
asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2095 |  CharPtr ptr;
      |          ^~~
asnprint.c: In function ‘AsnPrintTreeType’:
asnprint.c:2575:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2575 |  ptr = (Uint4)(atp);
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asntypes.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntypes.c:111:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asntypes.c: In function ‘AsnEnumTypeStr’:
asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1383 |     if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE))
      |     ^~
asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1386 |  avnp = (AsnValxNodePtr) atp->branch;
      |  ^~~~
asntypes.c: In function ‘AsnTreeLoad’:
asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1274 |     fscanf(fp, "%d %d %d", &numval, &numtype, &nummod);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1288 |         fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1301 |         fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1302 |             &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1303 |             bools+3, bools+4, &defaultvalue, &type, &branch, &next);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1333 |         fscanf(fp, "%s %s %d %d", name, fname, &type, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asngenob.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asngenob.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gifgen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gifgen.c:137:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from gifgen.c:137:
gifgen.c: In function ‘gdImageSetClip’:
../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 8 [-Wstringop-overflow=]
  194 | #define Nlm_MemCmp  memcmp
../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’
  213 | #define MemCmp  Nlm_MemCmp
      |                 ^~~~~~~~~~
gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’
 1850 |   if (clip  &&  MemCmp(&clip, &empty_clip, sizeof(gdRect))) {
      |                 ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF togif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from togif.c:111:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
togif.c: In function ‘gdImageCreateFromGif’:
togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable]
  961 |        int AspectRatio;
      |            ^~~~~~~~~~~
togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable]
  960 |        int Background;
      |            ^~~~~~~~~~
togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable]
  959 |        int ColorResolution;
      |            ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithrs.c:289:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithrs.c: In function ‘s_TlsDestroyAll’:
ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function ‘re_match_2’:
regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 3762 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                               ^
regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 3762 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                                                      ^
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2509 |   high_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |              ^
regex.c:4074:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4074 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2512 |   low_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |             ^
regex.c:4074:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4074 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable]
 4071 |             const char *sdummy;
      |                         ^~~~~~
regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable]
 4070 |             unsigned char *pdummy;
      |                            ^~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2509 |   high_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |              ^
regex.c:4288:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4288 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2512 |   low_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |             ^
regex.c:4288:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4288 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tsprintf.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbiargs.c:82:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from tree.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/matrix.h:44,
                 from matrix.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket.c:75:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_socket.c: In function ‘s_GetLocalPort’:
ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
  440 |     if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
      |                                                  ^~~~~~~
      |                                                  |
      |                                                  TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_IsConnected_’:
ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign]
 2572 |         if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
      |                                                                         ^~~~
      |                                                                         |
      |                                                                         TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  210 |          socklen_t *__restrict __optlen) __THROW;
      |          ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
ncbi_socket.c: In function ‘s_CreateOnTop’:
ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign]
 4435 |     if (getpeername(fd, &peer.sa, &peerlen) != 0) {
      |                                   ^~~~~~~~
      |                                   |
      |                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  131 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4471 |             if (getsockname(fd, &peer.sa, &peerlen) != 0)
      |                                           ^~~~~~~~
      |                                           |
      |                                           TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_CreateListening’:
ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4865 |         error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
      |                                                ^~~~~~~~
      |                                                |
      |                                                TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_Accept’:
ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign]
 5105 |     if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
      |                                                 ^~~~~~~~
      |                                                 |
      |                                                 TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  233 |      socklen_t *__restrict __addr_len);
      |      ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘s_RecvMsg’:
ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign]
 5409 |                           (struct sockaddr*) &sin, &sinlen);
      |                                                    ^~~~~~~
      |                                                    |
      |                                                    TSOCK_socklen_t * {aka int *}
In file included from /usr/s390x-linux-gnu/include/sys/socket.h:269,
                 from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
   65 |    __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len)
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘TRIGGER_Create’:
ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable]
 5661 |     unsigned int x_id = ++s_ID_Counter;
      |                  ^~~~
ncbi_socket.c: In function ‘DSOCK_Bind’:
ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 7390 |         error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
      |                                                   ^~~~~~~~
      |                                                   |
      |                                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_buffer.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core_c.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_util.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_priv.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ansi_ext.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connection.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connector.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_connutil.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_file_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_heapmgr.c:115:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_http_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_server_info.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_version.h:37,
                 from ncbi_version.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service_connector.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ftp_connector.c:49:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_dispd.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_local.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urlquery.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from urlquery.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF binary.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/binary.h:60,
                 from binary.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_sendmail.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn_connection.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_lbos.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’:
ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  756 |     if (s_LBOS_Lbosresolver == NULL)
      |     ^~
ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  759 |         s_LBOS_Lbosresolver = strdup(str + 7);
      |         ^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF parson.c
parson.c: In function ‘remove_comments’:
parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  281 |             for (i = 0; i < (ptr - string) + end_token_len; i++)
      |             ^~~
parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  283 |            string = ptr + end_token_len - 1;
      |            ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ipv6.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnflpt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnfspc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnmfls.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_gnutls.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_gnutls.c: In function ‘s_GnuTlsCreate’:
ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations]
  293 |     gnutls_connection_end_t end = (side == eSOCK_Client
      |     ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ncbi_gnutls.c:35:
ncbi_gnutls.c: In function ‘s_GnuTlsInit’:
ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  217 |             _mess.message     = NcbiMessagePlusError(&_mess.dynamic,    \
      |                                 ^~~~~~~~~~~~~~~~~~~~
ncbi_gnutls.c:582:17: note: ‘version’ was declared here
  582 |     const char* version;
      |                 ^~~~~~~
rm -f libconnssl.a
ar cru libconnssl.a ncbi_gnutls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libconnssl.a ../lib
ranlib ../lib/libconnssl.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objacces.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnacces.h:9,
                 from objacces.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objacces.c: In function ‘LinkSetAsnWrite’:
objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  140 |     if (atp == NULL)
      |     ^~
objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |  if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objacces.c: In function ‘LinkSetAsnRead’:
objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  216 |     if (atp == NULL)
      |     ^~
objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  219 |  lsp = LinkSetNew();
      |  ^~~
objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  220 |     if (lsp == NULL)
      |     ^~
objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  223 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  226 |     if (atp == NULL)
      |     ^~
objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |  if (AsnReadVal(aip, atp, &av) <= 0)     /* get the num */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objalign.h:103,
                 from objalign.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalign.c: In function ‘CommonSeqAlignLabelFunc’:
objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
  135 |  CharPtr curr, typelabel, tmp;
      |                           ^~~
objalign.c: In function ‘SeqAlignAsnRead’:
objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  597 |     if (atp == NULL)
      |     ^~
objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  600 |  sap = SeqAlignNew();
      |  ^~~
objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  601 |     if (sap == NULL)
      |     ^~
objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  604 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseDiagAsnWrite’:
objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1020 |     if (atp == NULL)
      |     ^~
objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1023 |  if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseDiagAsnRead’:
objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1112 |     if (atp == NULL)
      |     ^~
objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1115 |  ddp = DenseDiagNew();
      |  ^~~
objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1116 |     if (ddp == NULL)
      |     ^~
objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1119 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseSegAsnWrite’:
objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1268 |     if (atp == NULL)
      |     ^~
objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1271 |  if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseSegAsnRead’:
objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  dsp = DenseSegNew();
      |  ^~~
objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (dsp == NULL)
      |     ^~
objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘StdSegAsnWrite’:
objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1559 |     if (atp == NULL)
      |     ^~
objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1562 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1581 |     if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E))
      |     ^~
objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1584 |  if (ssp->scores != NULL)
      |  ^~
objalign.c: In function ‘StdSegAsnRead’:
objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1626 |     if (atp == NULL)
      |     ^~
objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1629 |  ssp = StdSegNew();
      |  ^~~
objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1630 |     if (ssp == NULL)
      |     ^~
objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1633 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SeqAlignSetAsnWrite’:
objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1704 |     if (atp == NULL)
      |     ^~
objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1708 |  oldsap = sap;
      |  ^~~~~~
objalign.c: In function ‘PackSegAsnWrite’:
objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1892 |     if (atp == NULL)
      |     ^~
objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1895 |  if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1926 |     if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts))
      |     ^~
objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1929 |  av.ptrvalue = psp->present;
      |  ^~
objalign.c: In function ‘PackSegAsnRead’:
objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1999 |     if (atp == NULL)
      |     ^~
objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2002 |  psp = PackSegNew();
      |  ^~~
objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2003 |     if (psp == NULL)
      |     ^~
objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2006 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SplicedSegAsnRead’:
objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2179 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegAsnRead’:
objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2422 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedExonAsnRead’:
objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2614 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierFree’:
objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2875 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘ProductPosFree’:
objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3050 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SplicedExonChunkFree’:
objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3225 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SpliceSiteAsnRead’:
objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3469 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘ProtPosAsnRead’:
objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseAlignAsnRead’:
objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3798 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegExtAsnRead’:
objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4020 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierAsnRead’:
objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2955 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘SplicedExonChunkAsnRead’:
objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3326 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘ProductPosAsnRead’:
objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3130 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objall.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from objall.c:63:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objbibli.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnbibli.h:9,
                 from objbibli.c:113:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objbibli.c: In function ‘AffilAsnRead’:
objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  208 |     if (atp == NULL)
      |     ^~
objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  211 |  afp = AffilNew();
      |  ^~~
objbibli.c: In function ‘AffilAsnWrite’:
objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  296 |     if (atp == NULL)
      |     ^~
objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  299 |  if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘AuthListFree’:
objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  458 |     if (alp->affil != NULL)
      |     ^~
objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  460 |  return (AuthListPtr)MemFree(alp);
      |  ^~~~~~
objbibli.c: In function ‘AuthListAsnRead’:
objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  489 |     if (atp == NULL)
      |     ^~
objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  492 |  alp = AuthListNew();
      |  ^~~
objbibli.c: In function ‘AuthListAsnWrite’:
objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  583 |     if (atp == NULL)
      |     ^~
objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  586 |  if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  590 |     if (! AsnOpenStruct(aip, atp, (Pointer)alp))   /* open AuthList SEQUENCE */
      |     ^~
objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  593 |  av.ptrvalue = alp->names;
      |  ^~
objbibli.c: In function ‘AuthorFree’:
objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  677 |     if (ap->affil != NULL)
      |     ^~
objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  679 |  return (AuthorPtr)MemFree(ap);
      |  ^~~~~~
objbibli.c: In function ‘AuthorAsnRead’:
objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  707 |     if (atp == NULL)
      |     ^~
objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  710 |  ap = AuthorNew();
      |  ^~
objbibli.c: In function ‘AuthorAsnWrite’:
objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  779 |     if (atp == NULL)
      |     ^~
objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  782 |  if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitArtAsnRead’:
objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  925 |     if (atp == NULL)
      |     ^~
objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  928 |  cap = CitArtNew();
      |  ^~~
objbibli.c: In function ‘CitArtAsnWrite’:
objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1027 |     if (atp == NULL)
      |     ^~
objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1030 |  if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1034 |     if (! AsnOpenStruct(aip, atp, (Pointer)cap))  /* open the SEQUENCE */
      |     ^~
objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1037 |  if (cap->title != NULL)
      |  ^~
objbibli.c: In function ‘ImprintAsnRead’:
objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1152 |     if (atp == NULL)
      |     ^~
objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1155 |  ip = ImprintNew();
      |  ^~
objbibli.c: In function ‘ImprintAsnWrite’:
objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1251 |     if (atp == NULL)
      |     ^~
objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1254 |  if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitRetractAsnRead’:
objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1391 |     if (atp == NULL)
      |     ^~
objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1394 |  crp = CitRetractNew();
      |  ^~~
objbibli.c: In function ‘CitRetractAsnWrite’:
objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1445 |     if (atp == NULL)
      |     ^~
objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1448 |  if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitJourAsnRead’:
objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1524 |     if (atp == NULL)
      |     ^~
objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1527 |  cjp = CitJourNew();
      |  ^~~
objbibli.c: In function ‘CitJourAsnWrite’:
objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1576 |     if (atp == NULL)
      |     ^~
objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1579 |  if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1585 |     if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp))
      |     ^~
objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1587 |     if (! AsnCloseStruct(aip, atp, (Pointer)cjp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitBookAsnRead’:
objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1676 |     if (atp == NULL)
      |     ^~
objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1679 |  cbp = CitBookNew();
      |  ^~~
objbibli.c: In function ‘CitBookAsnWrite’:
objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1744 |     if (atp == NULL)
      |     ^~
objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1747 |  if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1760 |     if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp))
      |     ^~
objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1762 |     if (! AsnCloseStruct(aip, atp, (Pointer)cbp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitProcAsnWrite’:
objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1879 |     if (atp == NULL)
      |     ^~
objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1882 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1901 |     if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata))
      |     ^~
objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1903 |     if (! AsnCloseStruct(aip, atp, (Pointer)cpp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitLetAsnWrite’:
objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1995 |     if (atp == NULL)
      |     ^~
objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1998 |  if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitPatAsnRead’:
objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2091 |     if (atp == NULL)
      |     ^~
objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2094 |  cpp = CitPatNew();
      |  ^~~
objbibli.c: In function ‘CitPatAsnWrite’:
objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2213 |     if (atp == NULL)
      |     ^~
objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2216 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘IdPatAsnRead’:
objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2346 |     if (atp == NULL)
      |     ^~
objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2349 |  idp = IdPatNew();
      |  ^~~
objbibli.c: In function ‘IdPatAsnWrite’:
objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2412 |     if (atp == NULL)
      |     ^~
objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2415 |  if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitGenAsnRead’:
objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2546 |     if (atp == NULL)
      |     ^~
objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2549 |  cgp = CitGenNew();
      |  ^~~
objbibli.c: In function ‘CitGenAsnWrite’:
objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2627 |     if (atp == NULL)
      |     ^~
objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2630 |  if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘TitleAsnWrite’:
objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2825 |     if (atp == NULL)
      |     ^~
objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2828 |  if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitSubFree’:
objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2909 |     if (csp == NULL)
      |     ^~
objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2912 |  AuthListFree(csp->authors);
      |  ^~~~~~~~~~~~
objbibli.c: In function ‘CitSubAsnRead’:
objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2943 |     if (atp == NULL)
      |     ^~
objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2946 |  csp = CitSubNew();
      |  ^~~
objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2958 |     if (atp == NULL)
      |     ^~
objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2961 |  if (atp == CIT_SUB_imp)
      |  ^~
objbibli.c: In function ‘CitSubAsnWrite’:
objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3029 |     if (atp == NULL)
      |     ^~
objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3032 |  if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3038 |     if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors))
      |     ^~
objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3041 |  if (csp->imp != NULL)
      |  ^~
objbibli.c: In function ‘PatPrioritySetAsnRead’:
objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3694 |      if (ppp == NULL)
      |      ^~
objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3697 |   if (head == NULL)
      |   ^~
objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3715 |      if (atp == NULL)
      |      ^~
objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3717 |   ppp->date = DateAsnRead(aip, atp);
      |   ^~~
objbibli.c: In function ‘PatPrioritySetAsnWrite’:
objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3755 |     if (! AsnOpenStruct(aip, set, (Pointer)ppp))  /* open the SEQUENCE OF */
      |     ^~
objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3758 |  for (tmp = ppp; tmp != NULL; tmp = tmp->next)
      |  ^~~
objbibli.c: In function ‘ArticleIdAsnRead’:
objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3849 |     if (atp == NULL)
      |     ^~
objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3852 |  aidp = ArticleIdNew();
      |  ^~~~
objbibli.c: In function ‘ArticleIdAsnWrite’:
objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3925 |     if (atp == NULL)
      |     ^~
objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3928 |  if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘PubStatusDateAsnRead’:
objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4039 |     if (atp == NULL)
      |     ^~
objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4042 |  psdp = PubStatusDateNew();
      |  ^~~~
objbibli.c: In function ‘PubStatusDateAsnWrite’:
objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4091 |     if (atp == NULL)
      |     ^~
objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4094 |  if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfeat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from objfeat.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objfeat.c: In function ‘ModelEvidenceSupportAsnRead’:
objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1500 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExperimentSupportAsnRead’:
objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1748 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ProgramIdAsnRead’:
objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1933 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘EvidenceBasisAsnRead’:
objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2103 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘InferenceSupportAsnRead’:
objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2267 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ModelEvidenceItemAsnRead’:
objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2483 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SeqFeatSupportAsnRead’:
objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2688 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualAsnRead’:
objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4244 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualSetAsnRead’:
objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4396 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAGenAsnRead’:
objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4524 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘GeneNomenclatureAsnRead’:
objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4707 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘OrgNameMatch’:
objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
 5957 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
objfeat.c: In function ‘TaxElementAsnWrite’:
objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 7399 |     if (! AsnOpenStruct(aip, atp, (Pointer)tep))
      |     ^~
objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 7402 |         av.intvalue = (Int4)(tep->fixed_level);
      |         ^~
objfeat.c: In function ‘PCRPrimerAsnRead’:
objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8276 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRPrimerSetAsnRead’:
objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8421 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionAsnRead’:
objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8542 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionSetAsnRead’:
objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8685 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneRefAsnRead’:
objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8812 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqSetAsnRead’:
objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9005 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqAsnRead’:
objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9135 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginAsnRead’:
objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9487 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginConditionAsnRead’:
objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9566 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VariationRefAsnRead’:
objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9645 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’:
objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10687 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_frameshiftAsnRead’:
objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10765 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VarRefDataFree’:
objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10865 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VarRefDataSetAsnRead’:
objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10918 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_elementFree’:
objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11112 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VariationInstAsnRead’:
objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11241 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: At top level:
objfeat.c:11393:1: warning: "/*" within comment [-Wcomment]
11393 | /**************************************************
      |  
objfeat.c: In function ‘VariantPropertiesAsnRead’:
objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11422 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PhenotypeAsnRead’:
objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11746 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PopulationDataAsnRead’:
objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11945 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExtLocAsnRead’:
objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12161 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Seq_seqFree’:
objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12327 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘DeltaItemAsnRead’:
objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12360 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asngen.h:9,
                 from objgen.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgen.c: In function ‘DateClean’:
objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  161 |     if (dp == NULL)
      |     ^~
objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  164 |  memset(dp, 0, sizeof(NCBI_Date));
      |  ^~~~~~
objgen.c: In function ‘DateAsnWrite’:
objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  399 |     if (atp == NULL)
      |     ^~
objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  402 |  if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘DateAsnRead’:
objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  494 |     if (atp == NULL)
      |     ^~
objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  497 |  dp = DateNew();
      |  ^~
objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  498 |     if (dp == NULL)
      |     ^~
objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  501 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c: In function ‘DbtagFree’:
objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (dbt == NULL)
      |     ^~
objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  755 |  dbt->tag = ObjectIdFree(dbt->tag);
      |  ^~~
objgen.c: In function ‘DbtagAsnRead’:
objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  784 |     if (atp == NULL)
      |     ^~
objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  787 |  dbt = DbtagNew();
      |  ^~~
objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  788 |     if (dbt == NULL)
      |     ^~
objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  791 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  799 |     if (dbt->tag == NULL)
      |     ^~
objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  802 |  atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret;   /* END_STRUCT */
      |  ^~~
objgen.c: In function ‘DbtagAsnWrite’:
objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  833 |     if (atp == NULL)
      |     ^~
objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  836 |  if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘ObjectIdAsnRead’:
objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  980 |     if (atp == NULL)
      |     ^~
objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  983 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  989 |     if (oid == NULL)
      |     ^~
objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  991 |  if (atp == OBJECT_ID_id)
      |  ^~
objgen.c: In function ‘ObjectIdAsnWrite’:
objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1024 |     if (atp == NULL)
      |     ^~
objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1027 |  if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘NameStdFree’:
objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1174 |     if (nsp == NULL)
      |     ^~
objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1177 |  for (i = 0; i < 7; i++)
      |  ^~~
objgen.c: In function ‘NameStdAsnRead’:
objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1208 |     if (atp == NULL)
      |     ^~
objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1211 |  nsp = NameStdNew();
      |  ^~~
objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1212 |     if (nsp == NULL)
      |     ^~
objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1215 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c: In function ‘NameStdAsnWrite’:
objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1271 |     if (atp == NULL)
      |     ^~
objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1274 |  if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘PersonIdFree’:
objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1368 |     if (pid == NULL)
      |     ^~
objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1371 |  if (pid->choice == 1)          /* Dbtag */
      |  ^~
objgen.c: In function ‘PersonIdAsnWrite’:
objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1464 |     if (atp == NULL)
      |     ^~
objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1467 |  if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘IntFuzzAsnRead’:
objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1682 |     if (atp == NULL)
      |     ^~
objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1685 |  ifp = IntFuzzNew();
      |  ^~~
objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1686 |     if (ifp == NULL)
      |     ^~
objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1689 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE (nothing) */
      |  ^~
objgen.c: In function ‘UserFieldAsnRead’:
objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1944 |     if (atp == NULL)
      |     ^~
objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1947 |  ufp = UserFieldNew();
      |  ^~~
objgen.c: In function ‘UserObjectAsnRead’:
objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2434 |     if (atp == NULL)
      |     ^~
objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2437 |  uop = UserObjectNew();
      |  ^~~
objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2438 |     if (uop == NULL)
      |     ^~
objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2441 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objloc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from objloc.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objloc.c: In function ‘SeqIdAsnWrite’:
objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  313 |     if (atp == NULL)
      |     ^~
objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  316 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIdAsnRead’:
objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  443 |     if (atp == NULL)
      |     ^~
objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  446 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c: In function ‘SeqIdDup’:
objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  587 |     if (oldid == NULL)
      |     ^~
objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  590 |  newid = ValNodeNew(NULL);
      |  ^~~~~
objloc.c: In function ‘SeqIdSetAsnRead’:
objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (AsnReadVal(aip, atp, &av) <= 0)    /* end struct */
      |     ^~
objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  754 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIdSetAsnWrite’:
objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  786 |     if (atp2 == NULL)
      |     ^~
objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  789 |  if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnWrite’:
objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  864 |     if (atp == NULL)
      |     ^~
objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  867 |  if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnRead’:
objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (atp == NULL)
      |     ^~
objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  937 |  tsip = TextSeqIdNew();
      |  ^~~~
objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  938 |     if (tsip == NULL)
      |     ^~
objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  941 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnWrite’:
objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1018 |     if (atp == NULL)
      |     ^~
objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1021 |  if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnRead’:
objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1071 |  psip = PatentSeqIdNew();
      |  ^~~~
objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1072 |     if (psip == NULL)
      |     ^~
objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1075 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘GiimAsnWrite’:
objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1151 |     if (atp == NULL)
      |     ^~
objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1154 |  if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘GiimAsnRead’:
objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1216 |     if (gip == NULL)
      |     ^~
objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1219 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnWrite’:
objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1305 |     if (atp == NULL)
      |     ^~
objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1308 |  if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnRead’:
objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  pdbsip = PDBSeqIdNew();
      |  ^~~~~~
objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (pdbsip == NULL)
      |     ^~
objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqLocAsnWrite’:
objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1528 |     if (atp == NULL)
      |     ^~
objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1531 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocAsnRead’:
objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1624 |     if (atp == NULL)
      |     ^~
objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1627 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1628 |     if (anp == NULL)
      |     ^~
objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1631 |  if (AsnReadVal(aip, atp, &av) <= 0)  /* read the CHOICE value (nothing) */
      |  ^~
objloc.c: In function ‘SeqLocMixAsnWrite’:
objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1738 |     if (atp == NULL)
      |     ^~
objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1741 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocEquivAsnWrite’:
objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1805 |     if (atp == NULL)
      |     ^~
objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1808 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnWrite’:
objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1873 |     if (atp2 == NULL)
      |     ^~
objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1876 |  if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnRead’:
objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1940 |     if (AsnReadVal(aip, atp, &av) <= 0)      /* read END_STRUCT */
      |     ^~
objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1942 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIntAsnWrite’:
objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2022 |     if (atp == NULL)
      |     ^~
objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2025 |  if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIntAsnRead’:
objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2095 |     if (atp == NULL)
      |     ^~
objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2098 |  sip = SeqIntNew();
      |  ^~~
objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2099 |     if (sip == NULL)
      |     ^~
objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2102 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqIntAsnWrite’:
objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2179 |     if (atp == NULL)
      |     ^~
objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2181 |  oldsip = sip;
      |  ^~~~~~
objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2185 |     if (! AsnOpenStruct(aip, atp, (Pointer)oldsip))
      |     ^~
objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2187 |  for ( ;sip != NULL; sip = sip->next)
      |  ^~~
objloc.c: In function ‘SeqPntAsnWrite’:
objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2309 |     if (atp == NULL)
      |     ^~
objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2312 |  if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqPntAsnRead’:
objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2374 |     if (atp == NULL)
      |     ^~
objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2377 |  spp = SeqPntNew();
      |  ^~~
objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2378 |     if (spp == NULL)
      |     ^~
objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2381 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqPntAsnWrite’:
objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2479 |     if (atp == NULL)
      |     ^~
objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2482 |  if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PackSeqPntAsnRead’:
objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2553 |     if (atp == NULL)
      |     ^~
objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2556 |  pspp = PackSeqPntNew();
      |  ^~~~
objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2557 |     if (pspp == NULL)
      |     ^~
objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2560 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqBondAsnWrite’:
objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2724 |     if (atp == NULL)
      |     ^~
objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2727 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqBondAsnRead’:
objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2776 |     if (atp == NULL)
      |     ^~
objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2779 |  sbp = SeqBondNew();
      |  ^~~
objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2780 |     if (sbp == NULL)
      |     ^~
objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2783 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmedli.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from objmedli.c:104:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmedli.c: In function ‘MedlineMeshAsnRead’:
objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  248 |     if (atp == NULL)
      |     ^~
objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  251 |  mmp = MedlineMeshNew();
      |  ^~~
objmedli.c: In function ‘DocRefFree’:
objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1190 |     if (drp == NULL)
      |     ^~
objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1193 |  return (DocRefPtr)MemFree(drp);
      |  ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objpub.h:70,
                 from objpub.c:125:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  831 |     if (AsnReadVal(aip, settype, &av) <= 0)    /* read START_STRUCT */
      |     ^~
objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  834 |  if (settype == PUB_SET_pub)
      |  ^~
objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (AsnReadVal(aip, settype, &av) <= 0)   /* read END_STRUCT for SET OF */
      |     ^~
objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  if (anp == NULL)
      |  ^~
objpub.c: In function ‘PubLabelUnique’:
objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |                 ^~~~
objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |       ^~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |         pnt = (* func)(aip, atp);
      |               ~^~~~~~~~~~~~~~~~~
objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  887 |             cit->choice = choice;
      |             ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objres.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from objres.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objscoremat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objscoremat.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objscoremat.c: In function ‘PssmAsnRead’:
objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   93 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmIntermediateDataAsnRead’:
objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  339 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmFinalDataAsnRead’:
objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  548 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmParametersAsnRead’:
objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  766 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmWithParametersAsnRead’:
objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  946 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘BlockPropertyAsnRead’:
objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1113 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreBlockAsnRead’:
objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1289 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘LoopConstraintAsnRead’:
objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1480 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreDefAsnRead’:
objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1646 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’:
objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1817 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from objseq.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objseq.c: In function ‘LinkageEvidenceAsnRead’:
objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1609 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqGapAsnRead’:
objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1764 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqDescrAsnWriteExtra’:
objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable]
 2035 |     Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
      |                                                ^~~~~~~
objseq.c: In function ‘AnnotIdAsnWrite’:
objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4841 |         else
      |         ^~~~
objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4843 |             break;
      |             ^~~~~
objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4849 |         else
      |         ^~~~
objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4851 |             break;
      |             ^~~~~
objseq.c: In function ‘AnnotDescAsnWrite’:
objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 5226 |         else
      |         ^~~~
objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 5228 |            break;
      |            ^~~~~
objseq.c: In function ‘BioseqAsnRead’:
objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  977 |         else if (osp->load_by_id)   /* don't load it */
      |                  ~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objblock.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objblock.h:70,
                 from objblock.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblock.c: In function ‘EMBLBlockFree’:
objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  900 |     if (ebp == NULL)
      |     ^~
objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  DateFree(ebp->creation_date);
      |  ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:48:51: warning: "/*" within comment [-Wcomment]
   48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
      |                                                    
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objcode.h:64,
                 from objcode.c:105:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsset.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from objsset.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsset.c: In function ‘BioseqSetFree’:
objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  363 |     if (bsp == NULL)
      |     ^~
objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  366 |  if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) {
      |  ^~
objsset.c: In function ‘SeqEntryFree’:
objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     else if (sep->choice == 2)
      |          ^~
objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  881 |  return (SeqEntryPtr)MemFree(sep);
      |  ^~~~~~
objsset.c: In function ‘SeqEntryFreeComponents’:
objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  898 |     else if (sep->choice == 2)
      |          ^~
objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  901 |  return sep;
      |  ^~~~~~
objsset.c: In function ‘SeqEntryAsnGet’:
objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1075 |     if (retcode == 1)   /* just after a Bioseq */
      |     ^~
objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1077 |  av.ptrvalue = (Pointer) osp;
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objsub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnsubmt.h:9,
                 from objsub.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsub.c: In function ‘SubmitAsnLoad’:
objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  341 |     if (loaded)
      |     ^~
objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  344 |  if (! SeqSetAsnLoad ())
      |  ^~
objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  347 |     if (AsnLoad())
      |     ^~
objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  350 |  ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission",
      |  ^~~~~~~~~~~~~~
objsub.c: In function ‘SeqSubmitAsnWrite’:
objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  455 |     if (atp == NULL)
      |     ^~
objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  458 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  462 |     if (! AsnOpenStruct(aip, atp, (Pointer)ssp))
      |     ^~
objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  465 |  if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret;
      |  ^~
objsub.c: In function ‘SeqSubmitAsnRead’:
objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  539 |     if (atp == NULL)
      |     ^~
objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  542 |  ssp = SeqSubmitNew();
      |  ^~~
objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  543 |     if (ssp == NULL)
      |     ^~
objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  546 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘SubmitBlockAsnWrite’:
objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  682 |     if (atp == NULL)
      |     ^~
objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  685 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  689 |     if (! AsnOpenStruct(aip, atp, (Pointer)sbp))
      |     ^~
objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  692 |  if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact))
      |  ^~
objsub.c: In function ‘SubmitBlockAsnRead’:
objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  770 |     if (atp == NULL)
      |     ^~
objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  773 |  oldatp = atp;
      |  ^~~~~~
objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  775 |     if (sbp == NULL)
      |     ^~
objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  778 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘ContactInfoAsnWrite’:
objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  942 |     if (atp == NULL)
      |     ^~
objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  945 |  if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  949 |     if (! AsnOpenStruct(aip, atp, (Pointer)cip))
      |     ^~
objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  952 |  if (cip->name != NULL)
      |  ^~
objsub.c: In function ‘ContactInfoAsnRead’:
objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1070 |  oldatp = atp;
      |  ^~~~~~
objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1073 |     if (cip == NULL)
      |     ^~
objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1076 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objprt.c: In function ‘PrintFormBooleanAsnRead’:
objprt.c:892:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  892 |  ptr=PrintFormBooleanFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormEnumAsnRead’:
objprt.c:1010:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1010 |  ptr=PrintFormEnumFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormTextAsnRead’:
objprt.c:1119:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1119 |  ptr=PrintFormTextFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormAsnRead’:
objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  600 |  vnp = PrintFormFree(vnp);
      |        ^~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormatAsnRead’:
objprt.c:435:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  435 |  ptr=PrintFormatFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintTemplateAsnRead’:
objprt.c:250:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  250 |  ptr=PrintTemplateFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormBlockAsnRead’:
objprt.c:767:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  767 |  ptr=PrintFormBlockFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘UserFormatAsnRead’:
objprt.c:1231:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1231 |  ptr=UserFormatFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objfdef.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from ../include/objfdef.h:48,
                 from objfdef.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objalignloc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objalignloc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalignloc.c: In function ‘AlignLocSetAsnRead’:
objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c: In function ‘Loc_locFree’:
objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  196 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  233 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable]
  232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘Loc_locAsnRead’:
objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable]
  313 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdFree’:
objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  527 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable]
  559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignBoxAsnRead’:
objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  750 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable]
  749 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignRowsAsnRead’:
objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  932 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable]
  931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignColumnsAsnRead’:
objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  615 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c:312:10: note: ‘choice’ was declared here
  312 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtable.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtable.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtable.c: In function ‘SeqTableColumnInfoAsnRead’:
objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableColumnAsnRead’:
objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  269 |    AsnReadFunc func;
      |                ^~~~
objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable]
  268 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableAsnRead’:
objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  474 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonStringTableAsnRead’:
objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  657 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonBytesTableAsnRead’:
objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  819 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘SeqTableSingleDataFree’:
objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1225 |    Pointer pnt;
      |            ^~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableMultiDataAsnRead’:
objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1111 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSparseIndexAsnRead’:
objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1559 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objpubme.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objpubme.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpubme.c: In function ‘PubmedEntryAsnRead’:
objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objpubme.c: In function ‘PubmedUrlAsnRead’:
objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  288 |    AsnReadFunc func;
      |                ^~~~
objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable]
  287 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmdrs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmdrs.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmdrs.c: In function ‘MedlarsEntryAsnRead’:
objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   85 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c: In function ‘MedlarsRecordAsnRead’:
objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable]
  258 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objproj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objproj.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objproj.c: In function ‘ProjectAsnRead’:
objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  116 |    AsnReadFunc func;
      |                ^~~~
objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable]
  115 |    Boolean isError = FALSE;
      |            ^~~~~~~
objproj.c: In function ‘ProjectDescrAsnRead’:
objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  720 |    AsnReadFunc func;
      |                ^~~~
objproj.c: In function ‘ProjdescFree’:
objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  857 |    Pointer pnt;
      |            ^~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable]
  898 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objgbseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objgbseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgbseq.c: In function ‘GBSetAsnRead’:
objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objgbseq.c: In function ‘GBSeqAsnRead’:
objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBReferenceAsnRead’:
objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBCommentAsnRead’:
objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBStrucCommentAsnRead’:
objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureAsnRead’:
objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureSetAsnRead’:
objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBAltSeqDataAsnRead’:
objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBXrefAsnRead’:
objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBStrucCommentItemAsnRead’:
objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBIntervalAsnRead’:
objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBQualifierAsnRead’:
objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBAltSeqItemAsnRead’:
objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtseq.c: In function ‘TSeqAsnRead’:
objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘TSeqSetAsnRead’:
objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  325 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘BioseqToTSeq’:
objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  452 |  Uint1 seqcode;
      |        ^~~~~~~
objtseq.c: In function ‘BioseqToMiniTSeq’:
objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  564 |  Uint1 seqcode;
      |        ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objinsdseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objinsdseq.c: In function ‘INSDSetAsnRead’:
objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objinsdseq.c: In function ‘INSDSeqAsnRead’:
objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDReferenceAsnRead’:
objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDCommentAsnRead’:
objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDStrucCommentAsnRead’:
objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureAsnRead’:
objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureSetAsnRead’:
objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’:
objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDXrefAsnRead’:
objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’:
objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDIntervalAsnRead’:
objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDQualifierAsnRead’:
objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’:
objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmacro.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmacro.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmacro.c: In function ‘AECRActionAsnRead’:
objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseActionAsnRead’:
objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  272 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable]
  271 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionListAsnRead’:
objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  478 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable]
  475 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SuspectRuleSetAsnRead’:
objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  595 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable]
  592 |    DataVal av;
      |            ^~
objmacro.c: In function ‘WordSubstitutionAsnRead’:
objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  731 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘WordSubstitutionSetAsnRead’:
objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable]
  896 |    DataVal av;
      |            ^~
objmacro.c: In function ‘StringConstraintAsnRead’:
objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1045 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1044 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StringConstraintSetAsnRead’:
objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1307 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable]
 1304 |    DataVal av;
      |            ^~
objmacro.c: In function ‘LocationPosConstraintFree’:
objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1403 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1432 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationConstraintAsnRead’:
objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1633 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1632 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValAsnRead’:
objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValChoiceFree’:
objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1979 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’:
objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2011 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalSetAsnRead’:
objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2165 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable]
 2162 |    DataVal av;
      |            ^~
objmacro.c: In function ‘FeatQualChoiceFree’:
objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2293 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldAsnRead’:
objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2474 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2473 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldLegalAsnRead’:
objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2641 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldPairAsnRead’:
objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2807 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2806 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaFeatTypeFree’:
objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2950 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2982 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualAsnRead’:
objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualPairAsnRead’:
objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3400 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3399 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualPairAsnRead’:
objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3576 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3575 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceFree’:
objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3704 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3733 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualTextValAsnRead’:
objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3950 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValChoiceFree’:
objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4080 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4112 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValSetAsnRead’:
objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4310 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable]
 4307 |    DataVal av;
      |            ^~
objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’:
objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4442 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4441 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldFree’:
objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4570 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMoleculePairAsnRead’:
objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4826 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4825 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTechniquePairAsnRead’:
objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4990 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4989 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’:
objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5154 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5153 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMolClassPairAsnRead’:
objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5318 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5317 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTopologyPairAsnRead’:
objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5482 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoStrandPairAsnRead’:
objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5646 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5645 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldPairFree’:
objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5774 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5821 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldListAsnRead’:
objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6015 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable]
 6012 |    DataVal av;
      |            ^~
objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’:
objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6149 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldFree’:
objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6280 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6312 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’:
objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6508 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6507 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘DBLinkFieldPairAsnRead’:
objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6678 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6677 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldConstraintAsnRead’:
objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6843 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’:
objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6974 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7003 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’:
objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7220 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7219 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PublicationConstraintAsnRead’:
objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7389 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7388 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceConstraintAsnRead’:
objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7571 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7570 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’:
objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7763 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7762 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’:
objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 7891 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’:
objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7920 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’:
objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8095 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8094 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldConstraintAsnRead’:
objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8279 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8278 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldTypeFree’:
objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8413 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’:
objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8666 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘QuantityConstraintFree’:
objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8875 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintAsnRead’:
objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9104 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TranslationConstraintAsnRead’:
objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceFree’:
objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9487 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9549 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceSetAsnRead’:
objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9783 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable]
 9780 |    DataVal av;
      |            ^~
objmacro.c: In function ‘TextMarkerFree’:
objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9879 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9911 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextPortionAsnRead’:
objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10109 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable]
10108 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldEditAsnRead’:
objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10328 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable]
10327 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldPairTypeFree’:
objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10478 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable]
10528 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyActionAsnRead’:
objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable]
10746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditActionAsnRead’:
objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10927 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable]
10926 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformFree’:
objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11061 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable]
11096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformSetAsnRead’:
objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11269 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable]
11266 |    DataVal av;
      |            ^~
objmacro.c: In function ‘ConvertActionAsnRead’:
objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11405 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable]
11404 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CopyActionAsnRead’:
objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11600 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable]
11599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SwapActionAsnRead’:
objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11768 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable]
11767 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AECRParseActionAsnRead’:
objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11932 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable]
11931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveActionAsnRead’:
objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12151 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable]
12150 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveOutsideActionAsnRead’:
objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12312 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable]
12311 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ActionChoiceFree’:
objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12455 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable]
12508 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceFree’:
objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12697 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable]
12726 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgAsnRead’:
objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable]
12910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdFree’:
objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13042 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable]
13074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcFree’:
objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13232 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable]
13270 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDstOrgAsnRead’:
objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13526 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable]
13525 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDestFree’:
objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13657 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable]
13695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationIntervalAsnRead’:
objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13905 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable]
13904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationChoiceFree’:
objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14033 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable]
14065 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceListAsnRead’:
objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14241 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable]
14238 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SequenceListChoiceFree’:
objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14337 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable]
14369 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyFeatureActionAsnRead’:
objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14560 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable]
14559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveFeatureActionAsnRead’:
objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14827 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable]
14826 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’:
objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14994 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable]
14993 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’:
objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15131 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’:
objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable]
15163 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RegionTypeAsnRead’:
objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable]
15331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsFree’:
objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15451 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable]
15486 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureActionAsnRead’:
objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15702 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable]
15701 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditLocationStrandAsnRead’:
objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable]
15910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial5SetActionAsnRead’:
objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16075 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable]
16074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial3SetActionAsnRead’:
objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable]
16238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PartialBothSetActionAsnRead’:
objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16403 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable]
16402 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ExtendToFeatureAsnRead’:
objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16568 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable]
16567 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationEditTypeFree’:
objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
16708 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable]
16755 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditFeatureLocationActionAsnRead’:
objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17032 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable]
17031 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoBlockAsnRead’:
objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable]
17231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDescriptorActionAsnRead’:
objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17415 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable]
17414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutodefActionAsnRead’:
objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17584 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘FixPubCapsActionAsnRead’:
objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17758 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable]
17757 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SortFieldsActionAsnRead’:
objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17963 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable]
17962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixAuthorCapsAsnRead’:
objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18142 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable]
18141 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixCapsActionFree’:
objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable]
18296 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixFormatActionFree’:
objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18470 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable]
18499 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’:
objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18705 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable]
18704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘GeneXrefTypeAsnRead’:
objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable]
18898 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘XrefTypeFree’:
objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19036 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘XrefTypeAsnRead’:
objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable]
19068 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveXrefsActionAsnRead’:
objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable]
19238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MakeGeneXrefActionAsnRead’:
objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19410 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable]
19409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AuthorFixActionAsnRead’:
objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19578 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable]
19577 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateSequencesActionAsnRead’:
objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable]
19746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcFree’:
objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19877 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable]
19909 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsActionAsnRead’:
objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20092 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable]
20091 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutofixActionAsnRead’:
objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20274 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable]
20273 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixSetsActionFree’:
objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20395 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable]
20424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchTypeFree’:
objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20582 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable]
20614 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchAsnRead’:
objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20873 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable]
20872 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableExtraDataFree’:
objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
21004 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ApplyTableExtraDataAsnRead’:
objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable]
21033 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableActionAsnRead’:
objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21210 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable]
21209 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddFileActionAsnRead’:
objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21411 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable]
21410 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddDescriptorListActionAsnRead’:
objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21582 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable]
21581 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveSequencesActionAsnRead’:
objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21753 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable]
21752 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’:
objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable]
21910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RetranslateCdsActionAsnRead’:
objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22084 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable]
22083 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’:
objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable]
22238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionChoiceFree’:
objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
22412 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable]
22522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SearchFuncFree’:
objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23116 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable]
23154 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SimpleReplaceAsnRead’:
objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23425 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable]
23424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceFuncFree’:
objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23564 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable]
23599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceRuleAsnRead’:
objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23781 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable]
23780 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SuspectRuleAsnRead’:
objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23955 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable]
23954 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3806 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4182 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4679 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5883 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6371 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8543 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9631 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11149 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13133 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18363 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18565 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20483 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22829 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1491 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2342 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8768 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8963 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9970 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10594 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12578 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12778 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13365 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13762 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14121 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14418 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
15556 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16859 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
19958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20712 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23259 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23648 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objent2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objent2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objent2.c: In function ‘Entrez2IdListAsnRead’:
objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanExpAsnRead’:
objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  277 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanElementFree’:
objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  416 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable]
  457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LimitsAsnRead’:
objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  666 |    AsnReadFunc func;
      |                ^~~~
objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable]
  665 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanTermAsnRead’:
objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  844 |    AsnReadFunc func;
      |                ^~~~
objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable]
  843 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2RequestAsnRead’:
objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1041 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1040 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2RequestFree’:
objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1203 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1256 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2EvalBooleanAsnRead’:
objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1493 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1492 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermQueryAsnRead’:
objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1669 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermPosAsnRead’:
objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2HierQueryAsnRead’:
objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2036 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2035 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2GetLinksAsnRead’:
objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2224 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2223 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2IdAsnRead’:
objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2419 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2418 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DtFilterAsnRead’:
objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2584 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2583 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2ReplyAsnRead’:
objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2762 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2761 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2ReplyFree’:
objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2935 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2991 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2InfoAsnRead’:
objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3237 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanReplyAsnRead’:
objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3409 |    AsnReadFunc func;
      |                ^~~~
objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3408 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumListAsnRead’:
objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3587 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2TermListAsnRead’:
objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3749 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2HierNodeAsnRead’:
objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3922 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2LinkSetAsnRead’:
objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4122 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4121 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountListAsnRead’:
objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4299 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DbInfoAsnRead’:
objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4466 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2FieldInfoAsnRead’:
objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4706 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4705 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkInfoAsnRead’:
objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4950 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’:
objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5149 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumAsnRead’:
objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5325 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DocsumDataAsnRead’:
objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5488 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5487 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermAsnRead’:
objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5655 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5654 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountAsnRead’:
objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5838 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5837 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  524 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1333 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ent2api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ent2api.h:45,
                 from ent2api.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pmfapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pmfapi.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function]
 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2)
      |                        ^~~~~~~~~~
pmfapi.c: In function ‘ConfirmAccStrInSep’:
pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1314 |   SeqIdFree (tmp);
      |   ^~~~~~~~~~~~~~~
pmfapi.c: In function ‘PubMedSynchronousQuery’:
pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1224 |     printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryEx’:
pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1479 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryTI’:
pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1663 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’:
pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1744 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiRevHistSynchronousQuery’:
pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1817 |     printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                   ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiAccVerSynchronousQuery’:
pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1869 |     printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnRevHistSynchronousQuery’:
pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1920 |     printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                     ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’:
pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1971 |     printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                    ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnListSynchronousQuery’:
pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2021 |     printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objtax3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax3.c: In function ‘Taxon3RequestAsnRead’:
objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RequestFree’:
objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  200 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘SequenceOfIntAsnRead’:
objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  418 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Taxon3ReplyAsnRead’:
objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3ReplyFree’:
objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  661 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3ErrorAsnRead’:
objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  872 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3DataAsnRead’:
objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1072 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Value_valueFree’:
objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1253 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1283 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RefreshFlagsAsnRead’:
objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1608 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objtax3.c: In function ‘T3RequestAsnRead’:
objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  297 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3ReplyAsnRead’:
objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  741 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1421 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c:1362:10: note: ‘choice’ was declared here
 1362 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tax3api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tax3api.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tax3api.c: In function ‘Tax3SynchronousQuery’:
tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable]
  189 |   time_t          t1, t2, t3;
      |                           ^~
tax3api.c: In function ‘CheckSuggestedFixes’:
tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1030 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘TryNewSuggestedFixes’:
tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1142 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘RemoveSpeciesSpecific’:
tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable]
 1398 |     CharPtr cp;
      |             ^~
At top level:
tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function]
 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function]
 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function]
 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~
tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function]
 2273 | static Boolean EndsWithSp (CharPtr str)
      |                ^~~~~~~~~~
tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function]
  990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function]
  362 | static Boolean HasMisspellingFlag (T3DataPtr t)
      |                ^~~~~~~~~~~~~~~~~~
tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function]
  298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
      |             ^~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objegkludge.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objegkludge.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objentgene.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentgene.c: In function ‘EntrezgeneAsnRead’:
objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  103 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘EntrezgeneSetAsnRead’:
objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  412 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable]
  409 |    DataVal av;
      |            ^~
objentgene.c: In function ‘GeneTrackAsnRead’:
objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘GeneCommentaryAsnRead’:
objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  768 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘Method_methodFree’:
objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1073 |    Pointer pnt;
      |            ^~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1104 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘Method_methodAsnRead’:
objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1184 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘GeneSourceAsnRead’:
objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1426 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1425 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘XtraTermsAsnRead’:
objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1641 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘OtherSourceAsnRead’:
objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1812 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1811 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1236 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objentgene.c:1183:10: note: ‘choice’ was declared here
 1183 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmla2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla2.c: In function ‘Mla2RequestFree’:
objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsg2AsnRead’:
objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsgList2AsnRead’:
objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla2.c: In function ‘Mla2BackAsnRead’:
objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  904 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mla2api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mla2api.h:45,
                 from mla2api.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF qblastapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
qblastapi.c: In function ‘SecondQBlastCallback’:
qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable]
  262 |   Boolean     waiting = FALSE;
      |               ^~~~~~~
qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’:
qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  826 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’:
qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  871 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘QBlastCheckQueue’:
qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
  688 |       sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscnapi.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmim.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmim.c: In function ‘MimSetAsnRead’:
objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimDateAsnRead’:
objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable]
  247 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEntryAsnRead’:
objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimCitAsnRead’:
objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  909 |    AsnReadFunc func;
      |                ^~~~
objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable]
  908 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimTextAsnRead’:
objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEditItemAsnRead’:
objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1276 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1275 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAllelicVariantAsnRead’:
objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimIndexTermAsnRead’:
objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1640 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimReferenceAsnRead’:
objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1819 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimLinkAsnRead’:
objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2195 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2194 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAuthorAsnRead’:
objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2369 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2368 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimPageAsnRead’:
objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2535 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2534 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objvalid.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objvalid.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objvalid.c: In function ‘FieldRuleAsnRead’:
objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable]
   87 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘FieldSetAsnRead’:
objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable]
  256 |    DataVal av;
      |            ^~
objvalid.c: In function ‘DependentFieldRuleAsnRead’:
objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  396 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable]
  395 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘DependentFieldSetAsnRead’:
objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  582 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable]
  579 |    DataVal av;
      |            ^~
objvalid.c: In function ‘CommentRuleAsnRead’:
objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  721 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable]
  720 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘CommentSetAsnRead’:
objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  926 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable]
  923 |    DataVal av;
      |            ^~
objvalid.c: In function ‘PhraseListAsnRead’:
objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1043 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable]
 1040 |    DataVal av;
      |            ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mimapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mimapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqport.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqport.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqport.c: In function ‘productLoc_to_locationLoc’:
seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable]
 4260 |     Boolean is_cdregion = FALSE;
      |             ^~~~~~~~~~~
seqport.c: In function ‘NaLocFromNaInterval’:
seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable]
 4590 |   Int4 p_end_pos;    /*the end of the product sequence in the current loc*/
      |        ^~~~~~~~~
seqport.c: In function ‘dnaLoc_to_aaLoc’:
seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |                  ^~~~~~~~~
seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |        ^~~~~~~~
seqport.c: In function ‘DeltaRevComp’:
seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5388 |   DeltaSeqPtr  dsp, dspnext;
      |                     ^~~~~~~
seqport.c: In function ‘SeqSearchEnterNucWord’:
seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 6943 |   Int2     next, patLen, state;
      |                  ^~~~~~
seqport.c: In function ‘ProtSearchEnterProtWord’:
seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 7817 |   Int2     next, patLen, state;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sequtil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from sequtil.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’:
sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable]
 7994 |     Uint1 first_strand, last_strand;
      |           ^~~~~~~~~~~~
sequtil.c: In function ‘SeqPointWriteEx’:
sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable]
 8532 |     Int4      fuzzlen, id_len;
      |               ^~~~~~~
sequtil.c: In function ‘TaxNameFromCommon’:
sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces]
 8687 |     static Nlm_TaxCommon taxcommon[40] = {
      |                                          ^
 8688 |     "Chinese hamsters", "Cricetulus sp."
      |     {
 8689 |     ,"Syrian golden hamsters", "Mesocricetus auratus"
      |     }{
 8690 |     ,"Syrian hamsters", "Mesocricetus sp."
      |     }{
 8691 |     ,"barley", "Hordeum sp."
      |     }{
 8692 |     ,"carrots", "Daucus sp."
      |     }{
 8693 |     ,"cats", "Felis sp."
      |     }{
 8694 |     ,"cattles", "Bos sp."
      |     }{
 8695 |     ,"chickens", "Gallus sp."
      |     }{
 8696 |     ,"chimpanzees", "Pan sp."
      |     }{
 8697 |     ,"chimpanzes", "Pan sp."
      |     }{
 8698 |     ,"corn", "Zea sp."
      |     }{
 8699 |     ,"cucumber", "Cucumis sativus"
      |     }{
 8700 |     ,"dogs", "Canis sp."
      |     }{
 8701 |     ,"goats", "Capra sp."
      |     }{
 8702 |     ,"gorillas", "Gorilla sp."
      |     }{
 8703 |     ,"guinea pigs", "Cavia sp."
      |     }{
 8704 |     ,"hamsters", "Cricetidae gen. sp."
      |     }{
 8705 |     ,"horses", "Equus sp."
      |     }{
 8706 |     ,"humans", "Homo sapiens"
      |     }{
 8707 |     ,"maize", "Zea sp."
      |     }{
 8708 |     ,"mice", "Mus sp."
      |     }{
 8709 |     ,"mouse", "Mus sp."
      |     }{
 8710 |     ,"peas", "Pisum sp."
      |     }{
 8711 |     ,"potatoes", "Solanum sp."
      |     }{
 8712 |     ,"potato", "Solanum sp."
      |     }{
 8713 |     ,"quails", "Phasianidae gen. sp."
      |     }{
 8714 |     ,"rabbits", "Oryctolagus sp."
      |     }{
 8715 |     ,"rats", "Rattus sp."
      |     }{
 8716 |     ,"rices", "Oryza sp."
      |     }{
 8717 |     ,"sheeps", "Ovis sp."
      |     }{
 8718 |     ,"sorghums", "Sorghum sp."
      |     }{
 8719 |     ,"soybeans", "Glycine sp."
      |     }{
 8720 |     ,"spinach", "Spinacia sp."
      |     }{
 8721 |     ,"swine", "Sus sp."
      |     }{
 8722 |     ,"tobacco", "Nicotiania sp."
      |     }{
 8723 |     ,"tomatoes", "Lycopersicon sp."
      |     }{
 8724 |     ,"tomato", "Lycopersicon sp."
      |     }{
 8725 |     ,"turkeys", "Meleagris sp."
      |     }{
 8726 |     ,"wheat", "Triticum sp."
      |     }{
 8727 |     ,"zebrafish", "Brachydanio sp."
      |     }{
 8728 | };
      | }
sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’:
sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable]
 9510 |     Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
      |                                                ^~~~~~~
sequtil.c: In function ‘SeqIdFromAccessionEx’:
sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable]
10110 |                             SeqIdPtr sip2;
      |                                      ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from ../include/prtutil.h:69,
                 from prtutil.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtutil.c: In function ‘StdFormatPrint’:
prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 1422 |  CharPtr ptr = NULL;
      |          ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from simple.c:68:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from simple.c:69:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofasta.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tofasta.c: In function ‘DoSpecialDefline’:
tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1461 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
tofasta.c: In function ‘FastaIdEx’:
tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
 3100 |     SeqIdPtr  sip;
      |               ^~~
tofasta.c: In function ‘CreateDefLineExEx’:
tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4991 |             if (vnp != NULL)
      |             ^~
tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4993 |               if (title != NULL) {
      |               ^~
tofasta.c: In function ‘x_SetSuffix’:
tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable]
 8313 |   Char     buf1 [512], buf2 [256];
      |                        ^~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2838:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 2838 |         fgets(buffer+1, BuffSize, fd);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:2863:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 2863 |             fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function]
 8058 |  static Boolean x_StringInList (
      |                 ^~~~~~~~~~~~~~
tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function]
 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function]
 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function]
 3541 | static SeqFeatPtr GetCDSProtUnindexed (
      |                   ^~~~~~~~~~~~~~~~~~~
tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function]
 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function]
 3283 | static Boolean get_descr (GatherContextPtr gcp)
      |                ^~~~~~~~~
tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function]
 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~
tofasta.c: In function ‘FastaReadSequenceInternalEx’:
tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2713 |             mask_sint->to = mask_to;
      |             ~~~~~~~~~~~~~~^~~~~~~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2866:29: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |             for(i =0; (ch = *firstchar) != NULLB; firstchar++, i++) {
      |                             ^~~~~~~~~~
tofasta.c: In function ‘BioseqFastaStreamInternal’:
tofasta.c:1351:49: warning: ‘%s’ directive writing up to 40 bytes into a region of size between 32 and 42 [-Wformat-overflow=]
 1351 |         sprintf (spn, "oData.push({gi:%ld,acc:\"%s\"})", (long) sf.gi, acc);
      |                                                 ^~                     ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 26 and 76 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tofile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tofile.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tomedlin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from tomedlin.c:153:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valid.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from valid.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valid.c: In function ‘GetUserFieldValueString’:
valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 2212 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
valid.c: In function ‘ValidateSeqIdCase’:
valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 3574 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateGenProdSet’:
valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 6046 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘CountAdjacentProc’:
valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 6730 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘CheckBioseqEndsForNAndGap’:
valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7040 |       if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) {
      |                                            ^
valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7061 |       if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) {
      |                                                        ^
valid.c: In function ‘ValidateBioseqInst’:
valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 7341 |   Uint1           tech;
      |                   ^~~~
valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable]
 7278 |   SeqFeatPtr      prot;
      |                   ^~~~
valid.c: In function ‘FixOrgModVoucher’:
valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable]
13882 |   Uint1    type = 0, allowed_type = 0;
      |                      ^~~~~~~~~~~~
valid.c: In function ‘ValidateBioSource’:
valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable]
15514 |   Boolean         isMicrosporidia = FALSE;
      |                   ^~~~~~~~~~~~~~~
valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable]
15512 |   Boolean         isEukaryote = FALSE;
      |                   ^~~~~~~~~~~
valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
15503 |   Int4            id;
      |                   ^~
valid.c: In function ‘ValidateDblink’:
valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
16786 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateSeqDescrCommon’:
valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
16883 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘GetFeatsInGaps’:
valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable]
18858 |   Int4              realBases;
      |                     ^~~~~~~~~
valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable]
18857 |   Int4              plusses;
      |                     ^~~~~~~
valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable]
18854 |   Int4              Ns;
      |                     ^~
valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable]
18851 |   Int4              dashes;
      |                     ^~~~~~
valid.c: In function ‘ValidateBioseqContextIndexed’:
valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
20267 |   if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
      |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                                                 ^~~~~~~~
valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                 ^~~~~~~~
valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                                   ^~~~~~~~~
valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                         ^~~~~~~~
valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable]
19442 |   SeqFeatPtr         cdsgene, utr5gene, utr3gene;
      |                                         ^~~~~~~~
valid.c: In function ‘ReportBadWGSGap’:
valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable]
21153 |     Boolean      is_wgs = FALSE;
      |                  ^~~~~~
valid.c: In function ‘ValidateBarcodeIndexNumber’:
valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable]
21432 |   Int4              bin_len;
      |                     ^~~~~~~
valid.c: In function ‘ValidateRptUnit’:
valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
23411 |   Boolean            badchars, found, just_nuc_letters, multi_rpt_unit, in_range;
      |                                ^~~~~
valid.c: In function ‘CheckForCommonCDSProduct’:
valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable]
25628 |   Boolean         is_nw = FALSE;
      |                   ^~~~~
valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable]
25625 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c: In function ‘CheckForIllegalDbxref’:
valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
26017 |   Int4         id;
      |                ^~
valid.c: In function ‘ValidateAnticodon’:
valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable]
26781 |                   ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
      |                                                     ^~~~~~~~
valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
26780 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c: In function ‘IsGeneXrefRedundant’:
valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28000 |   Int2          count;
      |                 ^~~~~
valid.c: In function ‘ValidateSeqFeat’:
valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable]
28328 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28308 |   Int2            count;
      |                   ^~~~~
valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
28286 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘CdTransCheck’:
valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
30490 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘SpliceCheckEx’:
valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
31313 |   SeqEntryPtr     sep;
      |                   ^~~
valid.c: In function ‘CdsProductIdCheck’:
valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
31689 |   GeneRefPtr  grp;
      |               ^~~
valid.c: In function ‘ValidateSeqLoc’:
valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
31754 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
31753 |   SeqLocPtr       tmp, prev;
      |                        ^~~~
valid.c: In function ‘SortSeqGraphProc’:
valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
32156 |   } else if (gip2->right < gip2->right) {
      |                          ^
At top level:
valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function]
30138 | static void ValidateTranslExcept (
      |             ^~~~~~~~~~~~~~~~~~~~
valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function]
27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
      |                ^~~~~~~~~~~~~~~~~~
valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function]
20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
      |                            ^~~~~~~~~~~~~~~~~~~~
valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function]
20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function]
17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location)
      |                ^~~~~~~~~~
valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function]
14642 | static Boolean CountryIsClosestToLatLon (
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function]
14545 | static Boolean LatLonInRange (
      |                ^~~~~~~~~~~~~
valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function]
13478 | static Boolean LatLonIsValid (CharPtr name)
      |                ^~~~~~~~~~~~~
valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function]
10462 | static Boolean ConsistentWithC (Char ch)
      |                ^~~~~~~~~~~~~~~
valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function]
 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
      |             ^~~~~~~~~~~~~~~
valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function]
 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~
valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function]
 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function]
 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from valapi.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valapi.c: In function ‘DoesStringMatchExpression’:
valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable]
  263 |   const char *errstr;
      |               ^~~~~~
valapi.c: In function ‘DoesFieldValueMatchExpression’:
valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
  292 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr.h:261,
                 from alignmgr.c:584:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr.c: In function ‘AlnMgrIndexParentSA’:
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1607 |       sap->saip = (Pointer)AMAlignIndexFree(amaip);
      |                   ^
alignmgr.c: In function ‘AlnMgrGetNthBlockRange’:
alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
 4182 |    AMAlignIndexPtr  amaip;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’:
alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable]
 5157 |    Boolean          nogap;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’:
alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
10840 |             Uint1 gap;
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function]
10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap)
      |                ^~~~~~~~~~~~~~~~~~~
alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function]
 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
      |                ^~~~~~~~~~~~~~~~~
alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function]
 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function]
 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’:
alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1149 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘am_print_seqalign_indexes’:
alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2416 |             for (j=0; j<(saip->ssdp[i]->numsect); j++)
      |                          ~~~~^~~~~~
alignmgr.c:2478:30: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2478 |             for (i=0; i<amaip->numbsqs; i++)
      |                         ~~~~~^~~~~~~~~
alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’:
alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4115 |             *stop = tmp_end;
      |             ~~~~~~^~~~~~~~~
alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4113 |             *start = tmp_beg;
      |             ~~~~~~~^~~~~~~~~
alignmgr.c: In function ‘AlnMgrDeleteNthRow’:
alignmgr.c:9809:31: warning: ‘abp_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9809 |                abp_prev->next = abp;
      |                ~~~~~~~~~~~~~~~^~~~~
alignmgr.c: In function ‘AlnMgrGetSubAlign’:
alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9097 |          salp = am_cleanupsalp(salp);
      |                 ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’:
alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5865 |    while (sip && !done)
      |          ^
alignmgr.c:5845:18: note: ‘sip_head’ was declared here
 5845 |    SeqIdPtr      sip_head;
      |                  ^~~~~~~~
alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5592 |    SeqIdFree(sip_tmp);
      |    ^~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘am_is_consistent’:
alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10114 |             AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliparse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aliparse.c: In function ‘s_IsInterleaved’:
aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  929 |   (s_configInfo.useMaybes == FALSE) &&
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  930 |   (seqLinePtr->maybe == FALSE))
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable]
  823 |   Boolean          isMaybe;
      |                    ^~~~~~~
aliparse.c: In function ‘s_ProcessInterId’:
aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1000 |   ErrInfoPtr  errPtr;
      |               ^~~~~~
aliparse.c: In function ‘s_ProcessInterSeq’:
aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1090 |   ErrInfoPtr  errPtr = NULL;
      |               ^~~~~~
aliparse.c: In function ‘s_AnalyzeInterleaved’:
aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1193 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessContigId’:
aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1385 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_ProcessContigSeq’:
aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1476 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_AnalyzeContiguous’:
aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1603 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_CheckContext’:
aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2150 |     (seqLinePtr->maybe == TRUE) &&
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
 2151 |     (s_configInfo.useMaybes == TRUE))
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 2131 |   ErrInfoPtr       errPtr;
      |                    ^~~~~~
aliparse.c: In function ‘PrintOutMultAlign’:
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
 3161 |          for (d; d<spacer; d++)
      |          ^~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3227:17: warning: variable ‘sdp’ set but not used [-Wunused-but-set-variable]
 3227 |    SeqDescrPtr  sdp;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
aliparse.c:57:18: warning: ‘s_SegCompare’ declared ‘static’ but never defined [-Wunused-function]
   57 | static int       s_SegCompare(const void *i,
      |                  ^~~~~~~~~~~~
aliparse.c:3186:13: warning: ‘PrintOutSegs’ defined but not used [-Wunused-function]
 3186 | static void PrintOutSegs(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~
aliparse.c:3130:13: warning: ‘PrintOutMultAlign’ defined but not used [-Wunused-function]
 3130 | static void PrintOutMultAlign(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
aliparse.c:449:13: warning: ‘s_FreeRowList’ defined but not used [-Wunused-function]
  449 | static void s_FreeRowList (ValNodePtr rowList)
      |             ^~~~~~~~~~~~~
aliparse.c: In function ‘s_GetRowIdString’:
aliparse.c:543:20: warning: ‘newIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  543 |   CharPtr          newIdStr;
      |                    ^~~~~~~~
aliparse.c: In function ‘s_ProcessMaybes’:
aliparse.c:696:21: warning: ‘lastSeqPart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  696 |   lastSeqPart->next = newSeqPart;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  337 | #define StringCmp Nlm_StringCmp
      |                   ^~~~~~~~~~~~~
aliparse.c:631:18: note: ‘currentIdStr’ was declared here
  631 |   CharPtr        currentIdStr;
      |                  ^~~~~~~~~~~~
aliparse.c: In function ‘Ali_Read’:
aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1355 |       errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1356 |         previousLength,
      |         ~~~~~~~~~~~~~~~
 1357 |         s_configInfo.declaredInfo.seqLength);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:1154:20: note: ‘previousLength’ was declared here
 1154 |   Int4             previousLength;
      |                    ^~~~~~~~~~~~~~
aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  927 |    if (seqLinePtr->sequence != NULL)
      |        ~~~~~~~~~~^~~~~~~~~~
aliparse.c:820:20: note: ‘seqLinePtr’ was declared here
  820 |   SeqLineInfoPtr   seqLinePtr;
      |                    ^~~~~~~~~~
aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  748 |   fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n",
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  749 |    seqLinePtr->rowNum,
      |    ~~~~~~~~~~~~~~~~~~~
  750 |    cLineType,
      |    ~~~~~~~~~~
  751 |    seqLinePtr->sequence);
      |    ~~~~~~~~~~~~~~~~~~~~~
aliparse.c:723:20: note: ‘cLineType’ was declared here
  723 |   Char             cLineType;
      |                    ^~~~~~~~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3276 |    SeqAlignAddInSeqEntry (sep_head, sanp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from aliread.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliread.c:6:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignval.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignval.c: In function ‘ValidateSeqlengthInDenseSeg’:
alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1267 |               if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
      |                 ^
alignval.c: In function ‘PercentStringMatch’:
alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable]
 1579 |   Int4 len1, len2, min_len, k, max_len;
      |                                ^~~~~~~
alignval.c: In function ‘CheckAlnSeqLens’:
alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable]
 2004 |   Int4     aln_len, start, stop;
      |            ^~~~~~~
alignval.c: In function ‘ValidateSeqAlign’:
alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 2125 |   MsgAnswer    ans;
      |                ^~~
alignval.c: In function ‘GetAlignmentColumnPercentIdentities’:
alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable]
 2511 |   Int4       num_match;
      |              ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function]
 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~
alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function]
 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
      |                ^~~~~~~~~~~~~~~~~~~~~~
alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function]
  602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
      |             ^~~~~~~~~~~~~~
alignval.c: In function ‘ValMessage’:
alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  465 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  448 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil1.c: In function ‘GeneExtendFunc’:
sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 2012 |   GeneRefPtr     grp;
      |                  ^~~
sqnutil1.c: In function ‘ParseAnticodon’:
sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3494 |   Uint1      strand;
      |              ^~~~~~
sqnutil1.c: In function ‘ParseCodeBreak’:
sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3617 |   Uint1         strand;
      |                 ^~~~~~
sqnutil1.c: In function ‘CleanUpPubdescAuthors’:
sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 9093 |   ValNodePtr PNTR  prev;
      |                    ^~~~
sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’:
sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable]
11948 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’:
sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable]
12007 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘ConsolidateBioSourceNotes’:
sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable]
13250 |   OrgModPtr    mod, note_mod;
      |                     ^~~~~~~~
sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable]
13249 |   SubSourcePtr ssp, note_ssp;
      |                     ^~~~~~~~
sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’:
sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
15059 |   Int2                 count;
      |                        ^~~~~
sqnutil1.c: In function ‘LinkTwoFeatures’:
sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
17930 |   SeqFeatXrefPtr  xref, prev_xref, next_xref;
      |                         ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function]
10386 | static CharPtr CleanUpSgml (
      |                ^~~~~~~~~~~
sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function]
10272 | static void SortGoTermsSfp (
      |             ^~~~~~~~~~~~~~
sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function]
 7405 | static Boolean IsStringSingleToken (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~
sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function]
 4942 | static void CleanupConsSplice (GBQualPtr gbq)
      |             ^~~~~~~~~~~~~~~~~
sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function]
 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~
sqnutil1.c: In function ‘PromoteXrefsExEx’:
sqnutil1.c:2336:34: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2336 |               sprintf (lcl, "lcl|%s", id);
      |                                  ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2321:32: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2321 |             sprintf (lcl, "lcl|%s", id);
      |                                ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2561:44: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2561 |                         sprintf (lcl, "lcl|%s", id);
      |                                            ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2546:42: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2546 |                       sprintf (lcl, "lcl|%s", id);
      |                                          ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2623:44: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2623 |                         sprintf (lcl, "lcl|%s", id);
      |                                            ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2608:42: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2608 |                       sprintf (lcl, "lcl|%s", id);
      |                                          ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2755:32: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2755 |             sprintf (lcl, "lcl|%s", id);
      |                                ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2740:30: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2740 |           sprintf (lcl, "lcl|%s", id);
      |                              ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil2.c: In function ‘FindResidueByName’:
sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5223 |   Uint1   last;
      |           ^~~~
sqnutil2.c: In function ‘ReadFeatureTableEx’:
sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable]
 7254 |   Boolean        isnote;
      |                  ^~~~~~
sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable]
 7246 |   Boolean        endsinspace;
      |                  ^~~~~~~~~~~
sqnutil2.c: In function ‘SeqEntryCopyReplace’:
sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
 9270 |  Uint1 type = 0;
      |        ^~~~
sqnutil2.c: In function ‘StreamingReadBioseq’:
sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable]
10095 |     Int2 level;
      |          ^~~~~
sqnutil2.c: In function ‘StreamAsnForDescriptors’:
sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10328 |     while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
      |            ^~~~
sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’:
sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10749 |     while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
      |            ^~~~
sqnutil2.c: In function ‘ReadFeatureTableFile’:
sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable]
11700 |   Int4           begin;
      |                  ^~~~~
sqnutil2.c: In function ‘ReadFastaOnly’:
sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
11894 |   Char           seqid [2048];
      |                  ^~~~~
sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’:
sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
12446 |   Char         line [4096], seqid [2048];
      |                             ^~~~~
sqnutil2.c: In function ‘SortSeqGraphProc’:
sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
13002 |   } else if (gip2->right < gip2->right) {
      |                          ^
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13052 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘GetScoresbySeqId’:
sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13461 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’:
sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
15480 |   Uint1       strand;
      |               ^~~~~~
sqnutil2.c: In function ‘IsStringInSpanInList’:
sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable]
16693 |   Int4    str_val;
      |           ^~~~~~~
sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable]
16691 |   Int4    prefix_len = 0, suffix_len;
      |                           ^~~~~~~~~~
sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’:
sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable]
18415 |   ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
      |                                   ^~~~~
sqnutil2.c: In function ‘AlignmentIntervalToString’:
sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable]
18779 |   Uint1      target_strand;
      |              ^~~~~~~~~~~~~
sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
18778 |   Int4       seq_len;
      |              ^~~~~~~
sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’:
sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                 ^~~~~~~~~~~~~
sqnutil2.c: In function ‘RemoveGIProc’:
sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
20926 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’:
sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable]
22812 |   Uint1     rcodon [4];
      |             ^~~~~~
sqnutil2.c: In function ‘CompareStructuredComment’:
sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                       ^~~~
sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                 ^~~~
sqnutil2.c: In function ‘UniqueAndCountValNodeCS’:
sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable]
25546 |   ValNodePtr    curr;
      |                 ^~~~
sqnutil2.c: In function ‘PerformArticleQuery’:
sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable]
25810 |   Boolean          debug_mode = FALSE;
      |                    ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function]
18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list)
      |                   ^~~~~~~~~~~~~~~~~
sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function]
18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil)
      |                     ^~~~~~~~~~~~
sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function]
16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function]
16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function]
 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function]
 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
      |                ^~~~~~~~~~~~
sqnutil2.c: In function ‘ReplaceLocalID’:
sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                      ^~
sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                 ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘DoAddToSecAccn’:
sqnutil2.c:2429:28: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 2429 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                            ^~~~
sqnutil2.c:2429:27: note: directive argument in the range [-2147483648, 2147483647]
 2429 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                           ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’:
sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                                ^~~~~~~~~~~~~
sqnutil2.c: In function ‘DoAddToSeqHist’:
sqnutil2.c:2593:28: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 2593 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                            ^~~~
sqnutil2.c:2593:27: note: directive argument in the range [-2147483648, 2147483647]
 2593 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                           ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘ReadAsnFastaOrFlatFileEx’:
sqnutil2.c:7919:52: warning: ‘%s’ directive writing up to 2047 bytes into a region of size 103 [-Wformat-overflow=]
 7919 |           sprintf (note, "No vector hits found for %s", seqid);
      |                                                    ^~
......
11125 |             sap = ReadVecScreenTable (&fc, seqid, annotname);
      |                                            ~~~~~    
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 26 and 2073 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13110:47: warning: ‘, Max: ’ directive writing 7 bytes into a region of size between 2 and 63 [-Wformat-overflow=]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                                               ^~~~~~~
sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 103) into a destination of size 84
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’:
sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  528 |   Int2               count;
      |                      ^~~~~
sqnutil3.c: In function ‘CautiousSeqEntryCleanup’:
sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable]
 2178 |   Boolean      taxserver;
      |                ^~~~~~~~~
sqnutil3.c: In function ‘AddGapSeqLit’:
sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable]
 3127 |   CharPtr         gap_chars = "NNNNNNNNNN"
      |                   ^~~~~~~~~
sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’:
sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable]
 3382 |   SeqEntryPtr   sub_sep, prev_sep, next_sep;
      |                          ^~~~~~~~
sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’:
sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable]
 4797 |   Int4        index, curr_seg, num_sets;
      |                                ^~~~~~~~
sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |                          ^~~~~~~~~
sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |               ^~~~~~~~~
sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’:
sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
12824 |   Uint1      strand;
      |              ^~~~~~
sqnutil3.c: In function ‘OrgNameMatchExceptOldName’:
sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
13713 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’:
sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable]
19281 |   Boolean    has_seq_submit = TRUE;
      |              ^~~~~~~~~~~~~~
sqnutil3.c: In function ‘GetCDSformRNA’:
sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
20267 |   Int2 count;
      |        ^~~~~
sqnutil3.c: In function ‘FindTextInFlatfileOncaller’:
sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
22140 |   Boolean         okay;
      |                   ^~~~
sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’:
sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable]
23168 |   Boolean    author_conflict = FALSE;
      |              ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘SortVnpByBspProjectId’:
sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress]
26956 |     if (vnp1 != NULL &&& vnp2 != NULL) {
      |                               ^~
sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’:
sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
31033 |   Boolean           special_flag = FALSE;
      |                     ^~~~~~~~~~~~
sqnutil3.c: In function ‘CollectionDateIsInTheFuture’:
sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable]
34586 |   CharPtr     str, time;
      |                    ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35189:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
35189 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function]
36777 | static void TestLatLonFormatting (FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function]
34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp)
      |                      ^~~~~~~~~~~~~~
sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function]
33998 | static CharPtr GetColon (CharPtr str)
      |                ^~~~~~~~
sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function]
17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
      |                        ^~~~~~~~~~~~~~~~
sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function]
10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’:
sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |             } else if (diff < best_diff) {
      |                       ^
sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’:
sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16769 |     if (strand == Seq_strand_minus) {
      |        ^
sqnutil3.c: In function ‘CheckForDivConflicts’:
sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8132 |          else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8131 |             ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FindMismatchedComments’:
sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
26612 |     sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
      |                                      ~~~~~~~~~^~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil4.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil4.c: In function ‘ListClauses’:
sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable]
 8566 |   FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
      |                                           ^~~~~~~~~
sqnutil4.c: In function ‘SmashOneTallClause’:
sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable]
 9900 |   ValNodePtr       subclause_featlist;
      |                    ^~~~~~~~~~~~~~~~~~
sqnutil4.c: In function ‘GetFeatureClauseForSeg’:
sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
10787 |   Int4              start, stop;
      |                     ^~~~~
sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’:
sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable]
13618 |     BioseqSetPtr bssp;
      |                  ^~~~
sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable]
13617 |     BioseqPtr bsp;
      |               ^~~
sqnutil4.c: In function ‘ConvertProtToImpFunc’:
sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15072 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil4.c: In function ‘ExtraCDSCreationActions’:
sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15989 |   SeqEntryPtr        psep, nsep;
      |                            ^~~~
sqnutil4.c: In function ‘TESTDisplayQualCombo’:
sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
17099 |   Int4             val;
      |                    ^~~
sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’:
sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable]
18589 |   CdRegionPtr crp;
      |               ^~~
sqnutil4.c: In function ‘AddNewUniqueAnnotations’:
sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable]
18780 |   SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
      |                                       ^~~~~~~~~~~~
sqnutil4.c: In function ‘AssignBioseqToLineageGroup’:
sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable]
19443 |   ValNodePtr   list, vnp, vnp_last = NULL;
      |                           ^~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sqnutil4.c:64:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function]
17248 | static void TESTDisplayList (ValNodePtr new_list)
      |             ^~~~~~~~~~~~~~~
sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function]
17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function]
16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function]
10029 | static ValNodePtr RemoveAllButLastCDS (
      |                   ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function]
 9998 | static void SmashTallClauses (
      |             ^~~~~~~~~~~~~~~~
sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function]
 9834 | static void RemoveFeats (
      |             ^~~~~~~~~~~
sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function]
 5211 | static Int4 CountFeatures (
      |             ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF subutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from subutil.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
subutil.c: In function ‘AddSeqLitToBioseq’:
subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  769 |     ValNodePtr vnp;
      |                ^~~
subutil.c: In function ‘AddReferenceToSegmentedEntry’:
subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 1163 |     SeqEntryPtr tmp, prev;
      |                      ^~~~
subutil.c: In function ‘GetDNAConv’:
subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1624 |        dnaconv[*ptr] = *ptr;
      |                ^~~~
subutil.c: In function ‘GetProteinConv’:
subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1646 |        protconv[*ptr] = *ptr;
      |                 ^~~~
subutil.c: In function ‘AddBasesToByteStore’:
subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1669 |         residue = dnaconv[ch];
      |                          ^
subutil.c: In function ‘AddAAsToByteStore’:
subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1700 |         residue = aaconv[ch];
      |                         ^
subutil.c: In function ‘CitArtBuild’:
subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 2683 |     ValNodePtr vnp, tmp;
      |                     ^~~
subutil.c: In function ‘MakeRNAFeature’:
subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 3639 |             if (AA_for_tRNA != '\0')
      |                             ^~
subutil.c:3639:17: note: did you mean to dereference the pointer?
 3639 |             if (AA_for_tRNA != '\0')
      |                 ^
At top level:
subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function]
 3546 | static SeqEntryPtr TranslateCdRegionNew (
      |                    ^~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF edutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/edutil.h:188,
                 from edutil.c:365:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
edutil.c: In function ‘SeqLocsToDeltaSeqs’:
edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
  795 |     SeqIdPtr sip;
      |              ^~~
edutil.c: In function ‘SeqLocCopyPart’:
edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
 2243 |     Boolean done, started, wasa_null, hada_null;
      |             ^~~~
edutil.c: In function ‘IndexedSeqFeatsCopy’:
edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2400 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqFeatsCopy’:
edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2504 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqLocInsert’:
edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 3686 |     Int4 diff, numpnt, i, tpos;
      |          ^~~~
edutil.c: In function ‘SeqEdRecreateDeletedFeats’:
edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 4212 |   SeqFeatPtr      sfp;
      |                   ^~~
edutil.c: In function ‘SeqEdSeqLocInsert’:
edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 4512 |   Int4 diff, numpnt, i, tpos;
      |        ^~~~
edutil.c: In function ‘SeqEdSeqLocDelete’:
edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 5069 |     Int4 diff;
      |          ^~~~
edutil.c: In function ‘SeqEdInsertAdjustFeat’:
edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 5300 |       && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c: In function ‘SeqEdDeleteFromBsp’:
edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6485 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6548 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable]
 6437 |   Boolean           merge_mode;
      |                     ^~~~~~~~~~
edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable]
 6428 |   Boolean           feats_altered = FALSE;
      |                     ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff1.c: In function ‘asn2ff_print’:
asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable]
  289 |  DescrStructPtr dsp = NULL;
      |                 ^~~
asn2ff1.c: In function ‘Asn2ffJobCreate’:
asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable]
  351 |  Uint4           itemID = 0;
      |                  ^~~~~~
asn2ff1.c: In function ‘SeqEntryToEntrez’:
asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable]
  498 |  SeqLocPtr    slp = NULL;
      |               ^~~
asn2ff1.c: In function ‘SeqLocToFlat’:
asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable]
 1518 |  Uint4            itemID=0;
      |                   ^~~~~~
asn2ff1.c: In function ‘asn2ff_setup’:
asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 1579 |  BioseqPtr bsp;
      |            ^~~
asn2ff1.c: In function ‘PrintStatusLine’:
asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable]
 2197 |  CharPtr   u, ptr=NULL;
      |               ^~~
asn2ff1.c: In function ‘asn2gb_setup’:
asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2403 |   if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
At top level:
asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function]
 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |             ^~~~~~~~~~~~~~~
asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function]
 2171 | static Boolean find_user_object(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~
asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function]
  816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
      |                   ^~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff1.c:45:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff1.c: In function ‘print_taxinfo’:
asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 4356 |   sprintf(tmp, "%d", gcode);
      |                   ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff1.c: In function ‘asn2embl_setup’:
asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2754 |    if (max == index+1) {
      |       ^
asn2ff1.c: In function ‘asn2gp_setup’:
asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2942 |    for (index=0; index < feat_num; index++) {
      |    ^~~
asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’:
asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1292 |     Boolean   rsult;
      |               ^~~~~
asn2ff1.c: In function ‘PrintSequence’:
asn2ff1.c:5218:25: warning: ‘%9ld’ directive writing between 9 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 5218 |       sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start));
      |                         ^~~~
asn2ff1.c:5218:24: note: directive argument in the range [-2147483648, 2147483647]
 5218 |       sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start));
      |                        ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from asn2ff2.c:216:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff2.c: In function ‘GetStrForBankit’:
asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable]
  518 |  Int2   i=0, ptrlen = 0;
      |         ^
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable]
  769 |  CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
      |                                  ^~~~~~
asn2ff2.c: In function ‘GP_GetSeqDescrComms’:
asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable]
 1163 |  Boolean got_comment=FALSE;
      |          ^~~~~~~~~~~
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1358 | static ChoicePID(SeqIdPtr sid)
      |        ^~~~~~~~~
asn2ff2.c: In function ‘GetGibbsqCommentLength’:
asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable]
 1600 |  Int4 gibbsq=0, total;
      |       ^~~~~~
asn2ff2.c: In function ‘GatherDescrByChoice’:
asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable]
 1864 |  Uint2 bspID;
      |        ^~~~~
At top level:
asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function]
 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~
asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function]
  680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~~
asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable]
  232 | static Boolean has_comment;
      |                ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff2.c:218:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |     if (is_other == TRUE  && mfp->completeness) {
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff3.c: In function ‘PutGeneFirst’:
asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable]
 1073 |  GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
      |                          ^~~~~~~~~
asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable]
 1072 |  Boolean still_looking=TRUE;
      |          ^~~~~~~~~~~~~
asn2ff3.c: In function ‘mRNAEvidenceComment’:
asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable]
 1157 |  Int4   Locus_id = 0;
      |         ^~~~~~~~
asn2ff3.c: In function ‘Add_gene_id’:
asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=]
 2717 |  sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
      |                       ~^   ~~~~~~~~~~~~~~~~~~
      |                        |            |
      |                        char *       Nlm_VoidPtr {aka void *}
      |                       %p
asn2ff3.c: In function ‘Add_trid’:
asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable]
 3123 |  BIG_ID gi = -1;
      |         ^~
At top level:
asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function]
 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
      |             ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff3.c:39:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘Add_dbxref.isra.0’:
../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
asn2ff3.c:216:10: note: ‘val’ was declared here
  216 |  CharPtr val;
      |          ^~~
asn2ff3.c: In function ‘GettRNAaa’:
asn2ff3.c:1619:11: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1619 |     ptr = Get3LetterSymbol(seq_code, table, trna->aa, error_msgs);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘mRNAEvidenceComment’:
../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
asn2ff3.c:1153:32: note: ‘ne_name’ was declared here
 1153 |  CharPtr   method = NULL, ptr, ne_name;
      |                                ^~~~~~~
asn2ff3.c: In function ‘ConvertToNAImpFeat’:
asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                       ^~~
asn2ff3.c:2254:22: note: directive argument in the range [1, 255]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                      ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff4.c: In function ‘FlatLocPoint’:
asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable]
  437 |  static Uint1 order[NUM_SEQID];
      |               ^~~~~
asn2ff4.c: In function ‘do_FlatLoc’:
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1122 |    if ( ! FlatVirtLoc( bsp, slp))
      |       ^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
      |        ^~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 1659 |  GeneRefPtr  grp;
      |              ^~~
asn2ff4.c: In function ‘MatchNAGeneToFeat’:
asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2196 |  NoteStructPtr  nsp; /* UNUSED */
      |                 ^~~
asn2ff4.c: In function ‘MatchAAGeneToFeat’:
asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2367 |  NoteStructPtr   nsp; /* UNUSED */
      |                  ^~~
asn2ff4.c: In function ‘SortOrganizeFeat’:
asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2457 |  if (ofp == NULL)
      |  ^~
asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2459 |   if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) {
      |   ^~
asn2ff4.c: In function ‘OrganizeSeqFeat’:
asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2578 |  if (ajp->ignore_top)
      |  ^~
asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2580 |   gsc.seglevels = 1;
      |   ^~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff4.c:273:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff4.c: In function ‘CheckNewSfpLoc.isra.0’:
asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1767 |   if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
      |       ^~~~~~~~~~~~~~
asn2ff4.c: In function ‘FlatLocHalfCaret’:
asn2ff4.c:388:35: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 2 and 22 [-Wformat-overflow=]
  388 |     sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)",
      |                                   ^~~
asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647]
  388 |     sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)",
      |                      ^~~~~~~~~~~~~~~~~~~~~~
asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 53 bytes into a destination of size 30
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                  ^~
asn2ff4.c:1723:17: note: directive argument in the range [1, 255]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                 ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff5.c: In function ‘format_cit_sub’:
asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1023 |             format == EMBLPEPT_FMT && afp->choice == 1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable]
  926 |   Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
      |                                         ^~~~~~~~~~
asn2ff5.c: In function ‘format_thesis’:
asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1213 |  Boolean /*UNUSED*/embl_format = FALSE;
      |                    ^~~~~~~~~~~
asn2ff5.c: In function ‘format_book’:
asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1296 |  Boolean embl_format = FALSE;
      |          ^~~~~~~~~~~
asn2ff5.c: In function ‘format_jourarticle’:
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1680 |    if (ip->pages != NULL)
      |       ^
asn2ff5.c: In function ‘StripParanthesis’:
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
 2124 |    temp++; *ptr_in++;
      |            ^~~~~~~~~
asn2ff5.c: In function ‘PostARefErrMessage’:
asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable]
 3005 |  Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
      |                    ^~~~~~~~~~~
asn2ff5.c: At top level:
asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function]
  188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
      |                          ^~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff5.c:177:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff5.c: In function ‘FlatJournal’:
asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~
asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~
asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1193:31: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1193 |    temp = StringMove(temp,afp -> country);
      |                           ~~~~^~~~~~~~~~
asn2ff5.c:1051:11: note: ‘afp’ was declared here
 1051 |  AffilPtr afp;
      |           ^~~
asn2ff5.c: In function ‘CheckPubs’:
asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2772 |     PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff6.c: In function ‘AddGBQual’:
asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable]
 1327 |  GBQualPtr curq, note = NULL;
      |                  ^~~~
asn2ff6.c: In function ‘FlatOrganelle’:
asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1483 |      if (! retval )
      |      ^~
asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1486 |       break;
      |       ^~~~~
asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’:
asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 1700 |  Int2 tech, /*UNUSED*/diff, retval = 0;
      |                       ^~~~
asn2ff6.c: In function ‘GR_PrintPubs’:
asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                         ^~~~
asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                ^~~~~
asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |             ^~~~
asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable]
 2296 |  CharPtr descr = NULL;
      |          ^~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                 ^~~~~~~~~~~~~~
asn2ff6.c: In function ‘ValidateOtherAccession’:
asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |                             ^~~~~~~
asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |          ^~~~~~~~~~~
asn2ff6.c: In function ‘AddExtraAccessions’:
asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable]
 3498 |  Boolean /*UNUSED*/ncbi = FALSE;
      |                    ^~~~
At top level:
asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function]
 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from asn2ff6.c:347:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:44: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                                            ^~~
asn2ff6.c: In function ‘MakeBaseLocusAwp’:
asn2ff6.c:3070:49: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3070 |  Int2  index, length, base_locus_max, name_len, num_of_digits, num_seg;
      |                                                 ^~~~~~~~~~~~~
asn2ff6.c: In function ‘GetLocusPartsAwp’:
asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3449 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3447 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3372 |        sprintf(gbp->locus, "%-16s", buf_acc);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3370 |        sprintf(gbp->locus, "%-10s", buf_acc);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3313:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3313 |      sprintf(gbp->locus, "%-16s", buf_acc);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3311:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3311 |      sprintf(gbp->locus, "%-10s", buf_acc);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3270:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3270 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3268:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3268 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb1.c: In function ‘IsWholeWordSubstr’:
asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 2202 |     Boolean left, right;
      |                   ^~~~~
asn2gnb1.c: In function ‘s_LocusGetBaseName’:
asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2350 |     else
      |     ^~~~
asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2352 |       newLength = segNameLen - deleteChars;
      |       ^~~~~~~~~
asn2gnb1.c: In function ‘DoOneSection’:
asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 2522 |   IntAsn2gbSectPtr     iasp;
      |                        ^~~~
asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable]
 2514 |   BlockMask            bkmask;
      |                        ^~~~~~
asn2gnb1.c: In function ‘Count2Seg’:
asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 3438 |   Int4           to;
      |                  ^~
asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable]
 3436 |   BioseqPtr      parent;
      |                  ^~~~~~
asn2gnb1.c: At top level:
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
 3714 | static ModeFlags flagTable [] = {
      |                                 ^
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c: In function ‘SeqIdWriteForTable’:
asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable]
 5808 |             pdb = NULL, general = NULL, gi = NULL;
      |             ^~~
asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable]
 5807 |   SeqIdPtr  accn = NULL, local = NULL, patent = NULL,
      |                                        ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘DoImmediateFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’
 6951 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable]
 6930 |   Boolean          is_www;
      |                    ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘asn2gnbk_format’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’
 7072 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c: In function ‘asn2gnbk_cleanup’:
asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 7118 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
asn2gnb1.c: In function ‘SeqEntryToGnbk’:
asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable]
 7304 |   Pointer            userdata = NULL;
      |                      ^~~~~~~~
asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable]
 7299 |   GBSeqPtr           gbseq = NULL;
      |                      ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb1.c: In function ‘PrintFtableIntervals’:
asn2gnb1.c:5463:28: warning: ‘
   ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=]
 5463 |   sprintf (str, "%s\t%s\t%s\n", str1, str2, label);
      |                            ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5487 |       sprintf (str, "%s\t%s\n", str1, str2);
      |                              ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb2.c: In function ‘s_LocusAddSuffix’:
asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable]
  217 |   Char    ch;
      |           ^~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1361 |       } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
      |                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
asn2gnb2.c: In function ‘IsSuccessor’:
asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |               ^~
asn2gnb2.c:1742:10: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |          ^
asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                                  ^~
asn2gnb2.c:1742:28: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                            ^
asn2gnb2.c: In function ‘IsProjectAccn’:
asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                      ^~
asn2gnb2.c:1767:34: note: did you mean to dereference the pointer?
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                  ^
asn2gnb2.c: In function ‘AddDblinkBlock’:
asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable]
 2892 |   Int4               parentID;
      |                      ^~~~~~~~
asn2gnb2.c: In function ‘AddSPBlock’:
asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration]
 3409 |     string = PrintDate (spb->created);
      |              ^~~~~~~~~
asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3409 |     string = PrintDate (spb->created);
      |            ^
asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3417 |     string = PrintDate (spb->sequpd);
      |            ^
asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3424 |     string = PrintDate (spb->annotupd);
      |            ^
asn2gnb2.c: In function ‘AddSourceOrganismBlock’:
asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable]
 5056 |   CharPtr            common;
      |                      ^~~~~~
asn2gnb2.c: In function ‘GetRefsOnBioseq’:
asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5893 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5890 |   Boolean            split;
      |                      ^~~~~
asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 5884 |   Int4               right;
      |                      ^~~~~
asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable]
 5878 |   Int4               left;
      |                      ^~~~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                        ^~
asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                       ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                         ^~~~
asn2gnb2.c:244:23: note: directive argument in the range [0, 65535]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                        ^~~~
asn2gnb2.c:246:23: note: directive argument in the range [0, 65535]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1514 |       sprintf (sect, "<li><a href=\"#comment_%s\" title=\"Jump to the comment section of this record\">Comment</a></li>",
      |                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1518 |     sprintf (sect, "<li><a href=\"#feature_%s\" title=\"Jump to the feature table of this record\">Features</a></li>",
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1527 |       sprintf (sect, "<li><a href=\"#genome_%s\" title=\"Jump to the genome section of this record\">Genome</a></li>",
      |                                                                                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1532 |       sprintf (sect, "<li><a href=\"#contig_%s\" title=\"Jump to the contig section of this record\">Contig</a></li>",
      |                                                                                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1579 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) nextGi, seqid);
      |                                                                                 ^~                                  ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1587 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) awp->nextGi, seqid);
      |                                                                                 ^~                                       ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1600 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) prevGi, seqid);
      |                                                                                 ^~                                      ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1608 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) awp->prevGi, seqid);
      |                                                                                 ^~                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb3.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb3.c: In function ‘GetStatusForRefTrack’:
asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable]
  796 |   UserFieldPtr  ufp, urf = NULL;
      |                      ^~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable]
 2656 |   Boolean            is_wgs = FALSE;
      |                      ^~~~~~
asn2gnb3.c: In function ‘GetSourcesOnBioseq’:
asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5472 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5470 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5468 |   Boolean            split;
      |                      ^~~~~
asn2gnb3.c: In function ‘AddSourceFeatBlock’:
asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable]
 5989 |   SeqIdPtr           sip;
      |                      ^~~
asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’:
asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6446 |   Boolean            isRefSeq;
      |                      ^~~~~~~~
asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’:
asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable]
 6595 |   SeqFeatPtr       lastsfp;
      |                    ^~~~~~~
asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable]
 6594 |   SeqAnnotPtr      lastsap;
      |                    ^~~~~~~
asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable]
 6593 |   Int4             lastright;
      |                    ^~~~~~~~~
asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable]
 6592 |   Int4             lastleft;
      |                    ^~~~~~~~
asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6591 |   Boolean          isRefSeq;
      |                    ^~~~~~~~
asn2gnb3.c: In function ‘GetFeatsOnBioseq’:
asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 6895 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable]
 6866 |   IntCdsBlockPtr     icp;
      |                      ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable]
 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable]
 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3429 |                         if (IS_protdb_accession (nm)) {
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb4.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockQuals’:
asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment]
 3723 |                 StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
      |                                                   
asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 3101 |   Boolean              split;
      |                        ^~~~~
asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable]
 3042 |   Boolean              at_end = FALSE;
      |                        ^~~~~~
asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’:
asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
 5325 |   CharPtr      prefix = "?";
      |                ^~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 6572 |   Boolean            split;
      |                      ^~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb4.c:42:
asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’
 8796 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb4.c: In function ‘FormatFeatureQuals’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’
 8869 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7695 |               oldscope = SeqEntrySetScope (sep);
      |                          ^~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb5.c: In function ‘FormatCitBookArt’:
asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2108 |   ValNodePtr   vnp;
      |                ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb5.c: In function ‘FormatReferenceBlock’:
asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                      ^~~
asn2gnb5.c:2553:19: note: directive argument in the range [-2147483648, 2147483647]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 14 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                      ^~~
asn2gnb5.c:2550:19: note: directive argument in the range [-2147483648, 2147483647]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 15 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb6.c: In function ‘FlatLocElement’:
asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2546 |         if (sintp->to > 0 &&
      |             ~~~~~~~~~~~~~~^~
 2547 |             (sintp->to != sintp->from ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2548 |              sintp->if_from != NULL ||
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~
 2549 |              sintp->if_to != NULL) ||
      |              ~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatContigBlock’:
asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5701 |   DeltaSeqPtr      dspnext;
      |                    ^~~~~~~
asn2gnb6.c: In function ‘ProcessGapSpecialFormat’:
asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable]
 6041 |   SeqIdPtr  sip;
      |             ^~~
asn2gnb6.c: In function ‘FormatSequenceBlock’:
asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 6168 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable]
   76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?";
      |                ^~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatSourceFeatBlock’:
asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=]
 4322 |   sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]);
      |                      ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatBasecountBlock’:
asn2gnb6.c:5365:58: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 10 and 50 [-Wformat-overflow=]
 5365 |     sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;",
      |                                                          ^~~
asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647]
 5365 |     sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;",
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 44 and 104 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ftusrstr.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function ‘CkLabelType’:
gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1465 |   for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbftglob.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbparint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/parsegb.h:57,
                 from gbparint.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbparint.c: In function ‘Nlm_gbparselex’:
gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2134 |                     if (*current_col != '\0')
      |                        ^
gbparint.c: In function ‘Nlm_gbparselex_ver’:
gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2520 |                     if (*current_col != '\0')
      |                        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces]
  112 |  ParFlat_AA_array[ParFlat_TOTAL_AA] = {
      |                                       ^
  113 |        "Ala", 'A',
      |        {         }
  114 |         "Asx", 'B',
      |         {         }
  115 |         "Cys", 'C',
      |         {         }
  116 |         "Asp", 'D',
      |         {         }
  117 |         "Glu", 'E',
      |         {         }
  118 |         "Phe", 'F',
      |         {         }
  119 |         "Gly", 'G',
      |         {         }
  120 |         "His", 'H',
      |         {         }
  121 |         "Ile", 'I',
      |         {         }
  122 |         "Xle", 'J',  /* was - notice no 'J', breaks naive meaning of index -Karl */
      |         {         }
  123 |         "Lys", 'K',
      |         {         }
  124 |         "Leu", 'L',
      |         {         }
  125 |         "Met", 'M',
      |         {         }
  126 |         "Asn", 'N',
      |         {         }
  127 |         "Pyl", 'O',  /* was - no 'O' */
      |         {         }
  128 |         "Pro", 'P',
      |         {         }
  129 |         "Gln", 'Q',
      |         {         }
  130 |         "Arg", 'R',
      |         {         }
  131 |         "Ser", 'S',
      |         {         }
  132 |         "Thr", 'T',
      |         {         }
  133 |         "Val", 'V',
      |         {         }
  134 |         "Trp", 'W',
      |         {         }
  135 |         "Sec", 'U', /* was - not in iupacaa */
      |         {         }
  136 |         "Xxx", 'X',
      |         {         }
  137 |         "Tyr", 'Y',
      |         {         }
  138 |         "Glx", 'Z',
      |         {         }
  139 |         "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/
      |         {          }
  140 |         "OTHER", 'X'};
      |         {           }
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF utilpub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from utilpub.c:13:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
utilpub.c: In function ‘FindCit’:
utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
  998 |  ImpFeatPtr  /*UNUSED*/ifp;
      |                        ^~~
utilpub.c: In function ‘ChangeCitQual’:
utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable]
 1053 |  ValNodePtr  vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
      |                                                     ^~~
utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 1052 |  ValNodePtr PNTR vnpp, /*UNUSED*/descr;
      |                                  ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ffprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from ffprint.c:127:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ffprint.c: In function ‘FFBSPrint’:
ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable]
  347 |     ByteStorePtr  byte_sp = NULL;
      |                   ^~~~~~~
At top level:
ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function]
  420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
      |                ^~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from ffprint.c:127:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF wprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
wprint.c: In function ‘LocPrintGenome’:
wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable]
 1696 |  SeqEntryPtr sep = NULL;
      |              ^~~
wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |                         ^
wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |             ^~~
wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable]
 1692 |  static Char  buf[14], val[166], temp[166];
      |                                  ^~~~
At top level:
wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable]
wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable]
   79 | static Char link_gdb_map[MAX_WWWBUF];
      |             ^~~~~~~~~~~~
wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable]
   77 | static Char link_pir[MAX_WWWBUF];
      |             ^~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from wprint.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
wprint.c: In function ‘PrintDate’:
wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  188 |    sprintf(day, "%d", (int) (date -> data[3] ));
      |                    ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wprint.c: In function ‘www_db_xref’:
wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                    ^~
wprint.c:969:17: note: directive argument in the range [-32768, 32767]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                 ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:19: note: ‘prefix’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:13: note: ‘link’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |             ^~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref_button’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1398:19: note: ‘prefix’ was declared here
 1398 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1398:13: note: ‘link’ was declared here
 1398 |  CharPtr s, link, prefix, ss;
      |             ^~~~
wprint.c: In function ‘PrintSPBlock’:
wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |      AddLink(s);
      |      ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF satutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/satutil.h:12,
                 from satutil.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
satutil.c: In function ‘CopyFeatureFromAlign’:
satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
 1011 |  Boolean check_gap;
      |          ^~~~~~~~~
At top level:
satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function]
  168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
      |                ^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from seqmgr.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmgr.c: In function ‘SeqEntrySetScope’:
seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  311 |     Boolean found;
      |             ^~~~~
seqmgr.c: In function ‘ClearBioseqFindCache’:
seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable]
  897 |   SeqMgrPtr  smp;
      |              ^~~
seqmgr.c: In function ‘GetUniGeneIDForSeqId’:
seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3676 |     if(StringCmp(db_tag->db, "BSNR") == 0)
      |     ^~
seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3678 |         if(StringCmp(db_tag->db, "HUMGEN") == 0)
      |         ^~
seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’:
seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 3736 |   ObjMgrPtr  omp;
      |              ^~~
seqmgr.c: In function ‘CheckForTransSplice’:
seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 5657 |   SeqLocPtr  prev, tmp;
      |              ^~~~
seqmgr.c: In function ‘SeqEntryAsnOut’:
seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                                         ^~~~~~~~~
seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                       ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqmgr.c:63:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from objmgr.c:51:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmgr.c: In function ‘ObjMgrReapOne’:
objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2727 |     if (omp->reaping)   /* protect against recursion caused by ObjMgrSendMsg */
      |     ^~
objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2730 |         lowest = UINT4_MAX;
      |         ^~~~~~
objmgr.c: In function ‘ObjMgrDeSelectStructFunc’:
objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3767 |     if (next != NULL)
      |     ^~
objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |         ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region);
      |         ^~~~~~~~~~~~~~~~~~
objmgr.c: In function ‘ObjMgrSelectFunc2’:
objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 4031 |         Boolean      retval = FALSE;
      |                      ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gather.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gather.c: In function ‘AttachDataProc’:
gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable]
 4827 |     Boolean no_good = FALSE, into_seqentry = FALSE;
      |                              ^~~~~~~~~~~~~
gather.c: In function ‘GatherSeqFeat’:
gather.c:1570:44: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |                                     tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c:1495:17: warning: ‘numcheck’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1495 |                 for (j = 0; ((j < numcheck) && (! takeit) && (!stop_now)); j++)
      |                 ^~~
gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1530 |                                 lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
      |                                                                                      ^
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
gather.c:1404:38: note: ‘lrdp’ was declared here
 1404 |     GatherRangePtr rdp = NULL, trdp, lrdp;
      |                                      ^~~~
gather.c: In function ‘gather_align_data’:
gather.c:2280:11: warning: ‘h_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2280 |         if(!(h_stop < m_start || h_start > m_stop))    /*it is within the range*/
      |           ^
gather.c:2280:12: warning: ‘h_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2280 |         if(!(h_stop < m_start || h_start > m_stop))    /*it is within the range*/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2219 |     SeqLocPtr master_loc, m_loc;
      |               ^~~~~~~~~~
gather.c:2470:90: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2470 |                                         stop = inverse ? SeqLocLen(master_loc) * mag_val : SeqLocLen(master_loc)/mag_val;
      |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c: In function ‘GatherBioseqFunc’:
gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3307 |                                 rdp->right = offset + tlen - 1;
      |                                              ~~~~~~~^~~~~~
gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3280 |                                    if (trunc_r)
      |                                       ^
gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3285 |                                     if (trunc_l)
      |                                        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accmmdbs.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from acccn3ds.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lsqfetch.c: In function ‘ChangeLocalToGenbank’:
lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1403 |   sprintf (tmp, "gb|%s", id);
      |                     ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF findrepl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from findrepl.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF codon.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/codon.h:61,
                 from codon.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
codon.c: In function ‘make_cds_paragraph’:
codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable]
  262 |  Int4 space_len, i;
      |       ^~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzcoll.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from jzcoll.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
jzcoll.c: In function ‘load_default_matrix’:
jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |       ~~~~~~^~~
jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |                  ~~~~~~^~~
jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |      ~~~~~~^~~
jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |                                ~~~~~~^~~
jzcoll.c: In function ‘GetUseThisGi’:
jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable]
  143 |  Boolean retval=FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘buffer_for_feature’:
jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable]
  514 |  Int2 i=0;
      |       ^
jzcoll.c: In function ‘ProcessTextInsertion’:
jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable]
  878 |  Int4 last_ins;
      |       ^~~~~~~~
jzcoll.c: In function ‘satcollfunc’:
jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable]
 1723 |  SeqLocPtr head;
      |            ^~~~
jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 1721 |  Uint1 strand;
      |        ^~~~~~
jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable]
 1720 |  Int4 current_pos;
      |       ^~~~~~~~~~~
jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable]
 1714 |  SeqLocPtr slp = NULL;
      |            ^~~
jzcoll.c: In function ‘coll_align_data’:
jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 2631 |     sprintf(buf, "%d", gilist->data.intvalue);
      |                   ~^   ~~~~~~~~~~~~~~~~~~~~~
      |                    |               |
      |                    int             Nlm_Int8 {aka long int}
      |                   %ld
jzcoll.c: In function ‘collect_anpnode_with_option’:
jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable]
 3053 |  ValNodePtr prev = NULL;
      |             ^~~~
jzcoll.c: In function ‘ck_seqfeat_extra’:
jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable]
 3414 |  Boolean has_gb = FALSE, has_med = FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘collseqfunc’:
jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3768 |      if(omtp->labelfunc !=NULL)
      |      ^~
jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |       fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority);
      |       ^~~
jzcoll.c: In function ‘load_open_close_sts_mark’:
jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable]
 4010 |  Boolean collected = FALSE;
      |          ^~~~~~~~~
jzcoll.c: In function ‘FeatNodeCompProc’:
jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |                    ^~~
jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |               ^~~
At top level:
jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function]
 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function]
 1654 | static Boolean collect_sequence_label(Uint1 format)
      |                ^~~~~~~~~~~~~~~~~~~~~~
jzcoll.c: In function ‘load_text’:
jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  421 |                             stdaa_res = SeqMapTableConvert(smtp, m_res);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jzmisc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jzmisc.h:86,
                 from jzmisc.c:23:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF maputil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from maputil.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
maputil.c: In function ‘load_gene_list’:
maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  690 |  Uint1 val;
      |        ^~~
maputil.c: In function ‘gmarkfunc’:
maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable]
  985 |  ValNodePtr syn = NULL;
      |             ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mconsist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/mconsist.h:4,
                 from mconsist.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macroapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macroapi.c: In function ‘AdvancedStringCompare’:
macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable]
 4463 |   Int4    len1, len2, init_target_match_len = 0, target_match_len = 0;
      |                       ^~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘RemoveGBQualMatch’:
macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable]
 6981 |   Boolean   rval = FALSE, does_match, do_remove;
      |                           ^~~~~~~~~~
macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’:
macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign]
 7726 |         wobble_list = ExpandWobbleCodon(codon);
      |                                         ^~~~~
      |                                         |
      |                                         Nlm_Uint1 * {aka unsigned char *}
macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon)
macroapi.c: In function ‘GetQualFromFeatureAnyType’:
macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 8536 |   if (str == NULL
      |       ~~~~~~~~~~~
 8537 |        && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo)
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 8681 |       sprintf (buf, "%d", vnp->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~
      |                       |            |
      |                       int          Nlm_Int8 {aka long int}
      |                      %ld
macroapi.c: In function ‘SetNameInPrimerList’:
macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10682 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘SetSeqInPrimerList’:
macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10703 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’:
macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12881 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’:
macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12916 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’:
macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12957 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘GetPubFieldFromPub’:
macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15043 |         sprintf (str, "%d", the_pub->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                         |                |
      |                         int              Nlm_Int8 {aka long int}
      |                        %ld
macroapi.c: In function ‘GetCitListsForSeqEntry’:
macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15825 |   Uint2           entityID;
      |                   ^~~~~~~~
macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
15823 |   Boolean         okay;
      |                   ^~~~
macroapi.c: In function ‘GetPubclassQualFromPub’:
macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable]
18324 |   CharPtr str = NULL;
      |           ^~~
macroapi.c: In function ‘GetPubMLStatus’:
macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
18681 |   CitSubPtr  csp;
      |              ^~~
macroapi.c: In function ‘CollectDBLinkObjectsForApply’:
macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                                        ^~~~~~~~
macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                       ^~~~~~~~
macroapi.c: In function ‘DoConvertActionToObjectListEx’:
macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable]
20844 |   Boolean          already_added, field_change;
      |                    ^~~~~~~~~~~~~
macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’:
macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25749 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’:
macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25872 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’:
macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25939 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘FindPosBeforeFeat’:
macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable]
26236 |   SeqFeatPtr  regulator = NULL, candidate;
      |               ^~~~~~~~~
macroapi.c: In function ‘PerformAutofixInSeqEntry’:
macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable]
29471 |   Int4 num_created = 0;
      |        ^~~~~~~~~~~
macroapi.c: In function ‘AddFileDescriptors’:
macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
29871 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’:
macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args]
31907 |           fprintf (log_fp, "Instantiated protein titles\n", num);
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘PreprocessAddDescriptorListMacro’:
macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
32020 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘FieldTypeFromString’:
macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
32370 |     if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) {
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘SummarizeRemoveOutsideAction’:
macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable]
32939 |   CharPtr case_insensitive = " (case insensitive)";
      |           ^~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetObjectTableForTabTable’:
macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
37508 |   ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
      |                                                               ^~~~
macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’:
macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
37987 |     sprintf (buf, "%d", vnp->data.intvalue + 1);
      |                    ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                     |                      |
      |                     int                    Nlm_Int8 {aka long int}
      |                    %ld
macroapi.c: In function ‘CheckObjTableForExistingText’:
macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
38084 |   Uint2      entityID;
      |              ^~~~~~~~
macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’:
macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
40352 |   CharPtr        prefix = NULL;
      |                  ^~~~~~
In file included from ../include/tax3api.h:51,
                 from macroapi.c:67:
macroapi.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function]
37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
      |                ^~~~~~~~~~~~~~~~~~~~~~
macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function]
27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function]
21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
      |             ^~~~~~~~~~~~~~~~~
macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function]
20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra)
      |                ^~~~~~~~~~~~~
macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function]
16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function]
10389 | static Boolean HasMultiplePrimerSets (CharPtr value)
      |                ^~~~~~~~~~~~~~~~~~~~~
macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function]
 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function]
 4590 | static void TestAdvancedStringMatch (void)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function]
 2806 | static Int4 OriginFromOriginName (CharPtr origin_name)
      |             ^~~~~~~~~~~~~~~~~~~~
macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function]
 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘AlsoChangeMrnaForObject’:
macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20637 |       if (mrna != NULL) {
      |          ^
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
In function ‘memset’,
    inlined from ‘MacroMakeGeneXrefs’ at macroapi.c:28641:3,
    inlined from ‘ApplyMacroToSeqEntryExEx’ at macroapi.c:31730:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:71:10: warning: ‘__builtin_memset’ offset [4121, 4128] from the object at ‘ld’ is out of the bounds of referenced subobject ‘lid’ with type ‘struct loginfo’ at offset 0 [-Warray-bounds]
   71 |   return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘memset’,
    inlined from ‘MacroRemoveXrefs’ at macroapi.c:28578:3,
    inlined from ‘ApplyMacroToSeqEntryExEx’ at macroapi.c:31723:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:71:10: warning: ‘__builtin_memset’ offset [4121, 4128] from the object at ‘ld’ is out of the bounds of referenced subobject ‘lid’ with type ‘struct loginfo’ at offset 0 [-Warray-bounds]
   71 |   return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpedit.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpedit.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpedit.c: In function ‘SeqAlignInsert’:
salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
  162 |  StdSegPtr ssp;
      |            ^~~
salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
  161 |         DenseDiagPtr ddp;
      |                      ^~~
At top level:
salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function]
 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
      |                  ^~~~~~~~~~~~~~~~~~~~~
salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function]
 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp)
      |                 ^~~~~~~~~~~
salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function]
 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp)
      |                ^~~~~~~~~~~~~~~~~~
salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function]
 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
      |                  ^~~~~~~~~~~~
salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function]
 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
      |                  ^~~~~~~~~~~~~~~~~~
salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function]
 3937 | static void reverse_seqloc (SeqLocPtr s_loc)
      |             ^~~~~~~~~~~~~~
salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function]
 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
      |             ^~~~~~~~~~~
salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function]
 3836 | static Int4 get_align_list_len(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~~~~~~
salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function]
 2939 | static SeqAnnotPtr open_annot(CharPtr f_name)
      |                    ^~~~~~~~~~
salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
 2835 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function]
 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
      |                ^~~~~~~~~~~~~~~~
salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function]
 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
      |                ^~~~~~~~~~~~~~~~~
salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function]
 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
      |                ^~~~~~~~~~
salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function]
 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function]
 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
      |                ^~~~~~~~~~~~~~~
salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function]
 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
      |                ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function]
 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
      |              ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function]
 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
      |             ^~~~~~~~~~~~~~~~
salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function]
 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
      |                    ^~~~~~~~~~~~~~~
salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function]
  254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
      |                ^~~~~~~~~~~~~~
salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function]
  158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
      |                    ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpstat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpstat.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  310 |   if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
      |      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignScoreFix’:
salpstat.c:172:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |      sp_last->next = (ScorePtr) MemNew(sizeof(Score));
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:382:7: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  382 |       SeqPortFree(spp_2);
      |       ^~~~~~~~~~~~~~~~~~
salpstat.c:363:36: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  363 |                           res_1 =  SeqPortGetResidue(spp_1);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignWindowScoreFN’:
salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2038 |                           residue_score[pos]=score;
      |                           ~~~~~~~~~~~~~~~~~~^~~~~~
salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2020 |                       qgaps_score[last_pos]=-(g_open+len*g_ext);
      |                                  ^
salpstat.c: In function ‘SeqAlignWindowScore’:
salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2214 |     return scoreptr;
      |            ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpacc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salpacc.h:33,
                 from salpacc.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpacc.c: In function ‘SeqAlignStrand’:
salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable]
  334 |           Uint1Ptr this_strand=Seq_strand_unknown;
      |                    ^~~~~~~~~~~
salpacc.c: In function ‘SeqAlignStop’:
salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  561 |           if(this_stop!=-1)
      |             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salprop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salprop.h:46,
                 from salprop.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salprop.c: In function ‘CopySeqLocFromSeqAlign’:
salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  398 |             else
      |             ^~~~
salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  401 |                if(crp != NULL)   /*for coding region features*/
      |                ^~
salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
  291 |    Boolean check_gap;
      |            ^~~~~~~~~
salprop.c: In function ‘FeatListToProp’:
salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable]
 1336 |   Uint4            feat_itemID;
      |                    ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salprop.c:46:
salprop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from salprop.c:42:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
salprop.c: In function ‘ApplyNewSeqFeat’:
salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  620 |         j = stop - SeqLocStop(sfp_location);
      |         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:514:17: note: ‘stop’ was declared here
  514 |                 stop,
      |                 ^~~~
salprop.c:674:17: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  674 |   SeqFeatPtr    sfp;
      |                 ^~~
salprop.c:733:24: warning: ‘*((void *)&ppp+1)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  733 |            if (!sfp_p5 && ppp.p5)
      |                ~~~~~~~~^~~~~~~~~
salprop.c:679:17: note: ‘*((void *)&ppp+1)’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:737:12: warning: ‘ppp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  737 |            SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:679:17: note: ‘ppp’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  861 |                              if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsap.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salsap.h:57,
                 from salsap.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsap.c: In function ‘DenseDiagToDenseSegFunc’:
salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                              ^~~~~~~~
salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                ^~~~~~~~
salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                               ^~~~~~~~~
salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                ^~~~~~~~~
salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                            ^~~~~~
salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function]
 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
      |             ^~~~~~~~~~~~~~~~~~~~
salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function]
 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
salsap.c: In function ‘SeqAlignEndExtend’:
salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  986 |    Uint1Ptr      n_strands;
      |                  ^~~~~~~~~
salsap.c: In function ‘CleanStrandsSeqAlign’:
salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1662 |         for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++)
      |                       ~~~~~~^~~~
salsap.c:1669:39: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1669 |         for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
      |                                 ~~~~~~^~
salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |   Int4Ptr     startp;
      |               ^~~~~~
salsap.c:1610:15: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1610 |   Int4Ptr     lenp;
      |               ^~~~
salsap.c: In function ‘LocalAlignToSeqAnnotDimn’:
salsap.c:1795:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1795 |   while ( j < lens )
      |         ^
salsap.c: In function ‘multseqalign_from_pairseqalign’:
salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4394 |            strandp++;
      |            ~~~~~~~^~
salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4245 |   if (!ok)
      |      ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salstruc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salstruc.h:56,
                 from salstruc.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salstruc.c: In function ‘prot_to_rputprot’:
salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  734 |      if (strptmp == '\0') break;
      |                  ^~
salstruc.c:734:10: note: did you mean to dereference the pointer?
  734 |      if (strptmp == '\0') break;
      |          ^
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable]
 1338 |   Int4               maxscroll;
      |                      ^~~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 2203 |   Uint2           entityID, itemtype;
      |                             ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salstruc.c:41:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:920:22: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |             bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID,
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  921 |                              from + adp->bufferstart, to + adp->bufferstart,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  922 |                              bspsip, Seq_strand_plus, TRUE, NULL, (Pointer) tdp, 0, 1);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salstruc.c:872:19: note: ‘entityID’ was declared here
  872 |   Uint2           entityID;
      |                   ^~~~~~~~
salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1093 |                          seq_info->entityID=entityID;
      |                          ~~~~~~~~~~~~~~~~~~^~~~~~~~~
salstruc.c:1005:17: note: ‘entityID’ was declared here
 1005 |   Uint2         entityID;
      |                 ^~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2194:19: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2194 |   SeqIdPtr        bspsip;
      |                   ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salutil.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salutil.c: In function ‘ReadBufferFromSap’:
salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable]
  128 |   Int4        bufflen, buffstart;
      |                        ^~~~~~~~~
salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable]
  127 |   Int4        sumstart;
      |               ^~~~~~~~
salutil.c: In function ‘IS_protSeqLoc’:
salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable]
  594 |   CharPtr seq;
      |           ^~~
salutil.c: In function ‘ReplaceSeqIdWithSeqId’:
salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 1236 |   SeqEntryPtr      oldscope;
      |                    ^~~~~~~~
salutil.c: In function ‘del_ssp_fromid’:
salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable]
 1722 |   SelEdStructPtr ssp,  pressp = NULL;
      |                        ^~~~~~
salutil.c: In function ‘checkCDSselect_forprotein’:
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2510 |         if (feat != NULL)
      |            ^
salutil.c: In function ‘NoMoreSegGapForOneAlignment’:
salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration]
 3647 |        AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salutil.c: In function ‘sesp_to_slp’:
salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1927 |   Int2           j,k;
      |                  ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udvseq.h:100,
                 from udvseq.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvseq.c: In function ‘UDV_EncodeIdxFeat’:
udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  448 |  return *((Int4Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_BigEncodeIdxFeat’:
udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  473 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_ParaGFTableFeatures’:
udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  947 |       pgp->nFeatLines=nFeatLines/*-decal*/;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~
udvseq.c:753:19: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  753 | Int4 BeginLines=0,PosFeat,StartLetter,StopLetter;
      |                   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blocks.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/blocks.h:88,
                 from blocks.c:93:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blocks.c: In function ‘IndexBlocks’:
blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
  928 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘IndexNewBlocks’:
blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
 1084 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘GetBlockOrientation’:
blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2383 |    return orient;
      |           ^~~~~~
blocks.c: In function ‘SAMergeBlocks’:
blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2165 |                tmp2 = tmp2->next;
      |                ~~~~~^~~~~~~~~~~~
blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1572 |          merged->segp_head = tmp_head;
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1470 |                tmp1->prev = tmp_curr;
      |                ~~~~~~~~~~~^~~~~~~~~~
blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1709 |                tmp1->prev = prev;
      |                ~~~~~~~~~~~^~~~~~
blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |             new_sabp1->segp_head = tmp_head;
      |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c: In function ‘SASplitBlock’:
blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2796 |             segp2->prev = segp2_prev;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces]
   58 |  {
      |  ^
   59 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
   60 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
   61 |    255,  00, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
   62 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
   63 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
   64 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
   65 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
   66 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
   67 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
   68 |      0, 255,   0, /* green       8                 0x00ff00 - */
      |      {          }
   69 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
   70 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
   71 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
   72 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
   73 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
   74 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
   75 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
   76 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
   77 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
   78 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
   79 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
   80 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
   81 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
   82 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
   83 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
   84 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
   85 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
   86 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
   87 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
   88 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
   89 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
   90 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
   91 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
   92 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
   93 |  };
      |  }
pgppop.c: In function ‘DDV_WWW_get_CDS_minus’:
pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  329 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
  327 |     numivals2=0;
      |     ^~~~~~~~~
pgppop.c: In function ‘DDV_WWW_get_CDS_plus’:
pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  451 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_DisplayTopScale’:
pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable]
 1300 | Char  szBlank[TABLE_LEFT_MARGIN+5]={""};
      |       ^~~~~~~
pgppop.c: In function ‘DDV_GetBLASTCompLine_1’:
pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                               ^
pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                                  ^
pgppop.c: In function ‘DDV_DisplayDefaultAlign’:
pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable]
 3169 | SABlockPtr  sabp=NULL;/*indexed SeqAlign*/
      |             ^~~~
pgppop.c: In function ‘DDV_ShowSeqAlign’:
pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable]
 3512 |     Char szPopSetAuth[INFO_SIZE+1]={""};
      |          ^~~~~~~~~~~~
pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable]
 3510 |     Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
      |          ^~~~~~~~~~~~
pgppop.c: In function ‘DDV_PrintPopSetSummary’:
pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable]
 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
      |         ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from pgppop.c:49:
pgppop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from pgppop.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function]
 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function]
 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function]
 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function]
  314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
      |             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from pgppop.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
pgppop.c: In function ‘DDV_GetPubValues’:
pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2873 |   sprintf(szBuf,"%d",year);
      |                    ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from pgppop.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_PopDisplay2’:
pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  998 |      pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1;
      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1004 |     vnp->next=NULL;
      |              ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF samutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/samutil.h:230,
                 from samutil.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
samutil.c: In function ‘SAM_AlignIdComp’:
samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  796 |     if ((a == NULL) || (b == NULL))
      |     ^~
samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  799 |  choice = a->choice;
      |  ^~~~~~
samutil.c: In function ‘SAM_AlignIdDup’:
samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  852 |     if (oldid == NULL)
      |     ^~
samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  855 |  newid = ValNodeNew(NULL);
      |  ^~~~~
samutil.c: In function ‘DDE_FreeStack’:
samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point]
 1556 |     Index = ++Index % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Add’:
samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point]
 1611 |     pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1622 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Prev’:
samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1686 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Next’:
samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1717 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_ShowRow’:
samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable]
 1984 |   Int4                i, NumRows, HiRow, LowRow, tmp1, tmp2;
      |                          ^~~~~~~
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3106 |   ValNodePtr        ptxtList, last_vnp, vnp;
      |                                         ^~~
samutil.c: In function ‘DDE_RightAddNode’:
samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable]
 3707 |   ValNodePtr     vnp, next_vnp, new_vnp;
      |                                 ^~~~~~~
samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’:
samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3757 |   Boolean     RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
      |                        ^~~~~~~
samutil.c: In function ‘DDE_RightMergeAndAddNodeList’:
samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3813 |   Boolean     RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
      |                                      ^~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable]
 4592 |   Int4           NumBlocks, i, NumRows, Index, BlockCount=0;
      |                                         ^~~~~
samutil.c: In function ‘DDE_CreateArraysForDenseSeg’:
samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable]
 5028 |   Int4      NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
      |                      ^~~~~~~
samutil.c: In function ‘DDE_GetLastVNP’:
samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3143 |   return(last_vnp);
      |         ^
samutil.c: In function ‘DDE_GetNumResidues’:
samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3166 |   return((to-from) + 1);
      |          ~~~^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvcolor.c:160:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcolor.c: In function ‘DDV_GetColor’:
ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1422 |     Int4 retval = 0;
      |          ^~~~~~
In file included from ../include/samutil.h:234,
                 from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/viewmgr.h:111,
                 from viewmgr.c:165:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from viewmgr.c:168:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function]
  683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
      |             ^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ddvcreate.h:142,
                 from ddvcreate.c:245:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces]
  290 |  {
      |  ^
  291 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
  292 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
  293 |    255,   0, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
  294 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
  295 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
  296 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
  297 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
  298 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
  299 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
  300 |      0, 192,   0, /* green       8                 0x00ff00 - */
      |      {          }
  301 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
  302 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
  303 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
  304 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
  305 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
  306 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
  307 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
  308 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
  309 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
  310 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
  311 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
  312 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
  313 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
  314 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
  315 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
  316 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
  317 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
  318 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
  319 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
  320 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
  321 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
  322 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
  323 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
  324 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
  325 |  };
      |  }
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’:
ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  493 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’:
ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable]
  529 |    Boolean          more;
      |                     ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’:
ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  779 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
  690 |    Boolean          last;
      |                     ^~~~
ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable]
  686 |    Int4             PopulateTo;
      |                     ^~~~~~~~~~
ddvcreate.c: In function ‘DDV_DisplayNewBLAST’:
ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable]
 1942 | Uint1          what;
      |                ^~~~
ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’:
ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 2878 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ddvcreate.c:249:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function]
 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
      |                ^~~~~~~~~~~~~~~~~~~
ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function]
  525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘UAMgrIntUAMsg’:
ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1141 |  ubd->from=Start;
      |  ~~~~~~~~~^~~~~~
ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                                         ^~~~~~~~~~~
ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1195 |    UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:60: note: ‘start_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                            ^~~~~~~~~~~~
ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1201 |    UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
      |                                                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:24: note: ‘halfBspLengthSeqR’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                        ^~~~~~~~~~~~~~~~~
ddvcreate.c:1200:50: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1200 |    UABitDescrInit(&uamp->ubd[0],BspStart,BspStart+halfBspLengthSeqL-1,FALSE);
      |                                          ~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:6: note: ‘halfBspLengthSeqL’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |      ^~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’:
ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   vnp_list[n-1]=vnp_para;
      |   ~~~~~~~~~~~~~^~~~~~~~~
ddvcreate.c: In function ‘UABuildDescriptor2’:
ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1541 |   *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
      |             ^~
ddvcreate.c: In function ‘DDV_DumpSAPInAFile’:
ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1798 |  DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1799 |   LineSize,hFile,byteSpp,matrix,gclr,NULL);
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_ReadSeqBin’:
ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2593 |  return btr;
      |         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jsavlt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jsavlt.h:4,
                 from jsavlt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF needleman.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/needleman.h:40,
                 from needleman.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’:
needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |                        ^~~~~~~~~
needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |          ^~~~~~~~~~~~
needleman.c: In function ‘FetchSequenceByLoc’:
needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  243 |     return query;
      |            ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF txalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
txalign.c: In function ‘addLinkoutForDefline’:
txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  188 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘addLinkoutForBioseq’:
txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  256 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘DrawTextToBuffer’:
txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 1254 |        snprintf(checkboxBuf, 200, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%d\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%d', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
      |                                                                                       ~^                                                                                              ~~~~~~~~~~~~~~~~~~
      |                                                                                        |                                                                                                       |
      |                                                                                        int                                                                                                     Nlm_Int8 {aka long int}
      |                                                                                       %ld
txalign.c: In function ‘load_align_sum_for_StdSeg’:
txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2230 |             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
      |                 ^~~
txalign.c: In function ‘ShowAlignNodeText2Ex’:
txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable]
 3030 |     Boolean is_end, strip_semicolon=TRUE;
      |             ^~~~~~
txalign.c: In function ‘Tx_PrintDefLine’:
txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable]
 4079 |  Int4 seqid_length = 0, total_length = 0;
      |       ^~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’:
txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4494 |             } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
      |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 4498 |                             if (bsp = BioseqLockById(bestid)) {
      |                                 ^~~
txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable]
 4200 |     Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
      |          ^~~~~~~~~~~~~~
txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable]
 4192 |     SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
      |                                           ^~~~~~~~
txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable]
 4188 |     Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
      |                 ^~~~~~~~~
txalign.c: In function ‘FormatScoreFromSeqAlignEx’:
txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable]
 4817 |         Int4 m_adj = 0, t_adj = 0;
      |                         ^~~~~
txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable]
 4816 |         Int4 last_m_to = 0, last_t_to = 0;
      |                             ^~~~~~~~~
txalign.c: In function ‘FSFPrintOneDefline’:
txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable]
 4925 |     Int4 gi, seqid_len = 0;
      |              ^~~~~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable]
 5142 |     Boolean allocated, first;
      |             ^~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment’:
txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                            ~~~~~^~~~~~~~~~~~
txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                                               ~~~~~^~~~~~~~~~~~
txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable]
 5575 |     Int4 i, lines, k, shift_info = 0;
      |             ^~~~~
txalign.c: In function ‘OOFDisplayTraceBack1’:
txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c: In function ‘OOFDisplayTraceBack2’:
txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c: In function ‘FDGetTaxNamesFromBioseq’:
txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable]
 6239 |     BlastDefLinePtr bdsp;
      |                     ^~~~
txalign.c: At top level:
txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function]
  310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
      |                   ^~~~~~~~~~~~~~~~~~~~
txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function]
 2915 | get_seq_id(SeqAlignPtr sap, Int2 index)
      | ^~~~~~~~~~
txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function]
 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame)
      |                ^~~~~~~~~~~~~~~~~
txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function]
  112 | static CharPtr getNameInitials(CharPtr name){
      |                ^~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
txalign.c: In function ‘DrawTextToBuffer’:
../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
txalign.c:1094:10: note: ‘HTML_buffer’ was declared here
 1094 |  CharPtr HTML_buffer;
      |          ^~~~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment.isra.0’:
txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:48: note: ‘pro_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                                ^~~~~~~~~~~~~~
txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:32: note: ‘dna_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                ^~~~~~~~~~~~~~
txalign.c: In function ‘find_score_in_align’:
txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2080 |                       stdaa_res = SeqMapTableConvert(smtp, t_res);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:1980:20: note: ‘smtp’ was declared here
 1980 |     SeqMapTablePtr smtp;
      |                    ^~~~
txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1945 |             SeqPortFree(t_spp);
      |             ^~~~~~~~~~~~~~~~~~
txalign.c:1876:23: note: ‘t_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                       ^~~~~
txalign.c:1961:5: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1961 |     SeqPortFree(m_spp);
      |     ^~~~~~~~~~~~~~~~~~
txalign.c:1876:16: note: ‘m_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                ^~~~~
txalign.c: In function ‘ShowAlignNodeText2Ex.isra.0’:
txalign.c:3025:10: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3025 |     Int4 m_len;   /*length of the master sequence*/
      |          ^~~~~
txalign.c: In function ‘ShowTextAlignFromAnnot3’:
txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  949 |     return retval;
      |            ^~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5359:37: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 5359 |         sprintf(buffer, " <a name = %s_%ld></a>"
      |                                     ^~
......
 5362 |                 id_buffer, (long) score, id_buffer, (long) score,
      |                 ~~~~~~~~~            
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
 5359 |         sprintf(buffer, " <a name = %s_%ld></a>"
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 63 and 4238 bytes into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’:
txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 4647 |                     sprintf(buffer1, "<a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                  ^~          ~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=]
 4645 |                     sprintf(buffer1, " <a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                   ^~          ~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 18 or more bytes (assuming 2066) into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fdlobj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from fdlobj.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fdlobj.c: In function ‘BlastDefLineSetAsnRead’:
fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
fdlobj.c: In function ‘BlastDefLineAsnRead’:
fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  202 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr2.h:110,
                 from alignmgr2.c:242:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’:
alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value]
  885 |             for (j; j<dsp->numseg && next == -1; j++)
      |             ^~~
alignmgr2.c: In function ‘AlnMgr2CopySeg’:
alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2984 |       if (ldelta = ABS(s->beg - beg)) {
      |           ^~~~~~
alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’:
alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3221 |   while (a = AlnMgr2GetNextSeqPiece(a)) {
      |          ^
alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3223 |     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
      |            ^
alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3233 |   while (A = AlnMgr2GetNextSeqPiece(A)) {
      |          ^
alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3237 |       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
      |              ^
alignmgr2.c: In function ‘AlnMgr2SetUnaln’:
alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable]
 5410 |    DenseSegPtr       dsp;
      |                      ^~~
alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’:
alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 5623 |          while (more = AlnMgr2GetNextAlnBit(sap, amp))
      |                 ^~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
 5719 |    Boolean          found;
      |                     ^~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable]
 6085 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value]
 6331 |       for (i; i<interrupt->segnum; i++)
      |       ^~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |                    ^~
alignmgr2.c:6774:8: note: did you mean to dereference the pointer?
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |        ^
alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’:
alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable]
 8341 |    Int4         numseqs;
      |                 ^~~~~~~
alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable]
 8339 |    Int4         mismatch;
      |                 ^~~~~~~~
alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8338 |    Int4         len;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignmgr2.c:242:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function]
 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function]
 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
      |                  ^~~~~~~~~~~~~~~~~~
alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function]
 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function]
 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetLongestSeqLoc’:
alignmgr2.c:10131:15: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10131 |    SeqLocPtr  slp_longest;
      |               ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexLite’:
alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1001 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here
  968 |    SeqAlignPtr  sap_segs_prev;
      |                 ^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6122 |             *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
      |                                                   ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’:
alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7068 |       for (i=0; i<saip->srdp[row]->numunaln && !found; i++)
      |                   ~~~~^~~~~~
alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7077 |    for (i=0; i<dsp->dim; i++)
      |                ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6353 |    iip->strand = strand;
      |    ~~~~~~~~~~~~^~~~~~~~
alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6182 |       trans = saip->srdp[saip->anchor-1]->sect;
      |               ~~~~^~~~~~
alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6337 |                iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1];
      |                                             ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’:
alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6478 |    srdp = saip->srdp[n-1];
      |           ~~~~^~~~~~
alignmgr2.c:6489:57: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6489 |       beg = dsp->starts[srdp->sect[srdp->numsect-1]*(dsp->dim) + n-1];
      |                                                     ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’:
alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6550 |       *start = saip->aligncoords[i];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6558 |       *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
      |                                      ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6789 |          len += AlnMgr2GetMaxUnalignedLength(salp, i);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6780 |          lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1];
      |                    ~~~~^~~~~~
alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6788 |          len += dsp->lens[i];
      |                 ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6025 |    if (saip->anchor <= 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:5717:21: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5717 |    DenseSegPtr      dsp;
      |                     ^~~
alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’:
alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6813 |    if (saip->numunaln > 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’:
alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6836 |    if (saip->numunaln >= 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’:
alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6870 |       *start = saip->aligncoords[saip->unaln[n-1]+1];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’:
alignmgr2.c:6889:22: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6889 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c:6936:65: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6936 |       *start = dsp->starts[(saip->srdp[row-1]->unaligned[i])*dsp->dim+row-1] + dsp->lens[(saip->srdp[row-1]->unaligned[i])];
      |                                                              ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’:
alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7019 |             maxseg = saip->unaln[*seg];
      |                      ~~~~^~~~~~~
alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7024 |             (*len) += dsp->lens[i];
      |                       ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’:
alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7185 |    start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
      |                                                           ~~~^~~~~~~~
alignmgr2.c:7150:21: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7150 |    Uint4Ptr         aligncoords;
      |                     ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’:
alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7652 |    if (saip->anchor > 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:7590:21: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7590 |    DenseSegPtr      dsp;
      |                     ^~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’:
alignmgr2.c:7715:11: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7715 |    sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:7730:36: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7730 |       return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset);
      |                                ~~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetSubAlign’:
alignmgr2.c:8036:13: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8036 |    if ((a = AlnMgr2FindAnchor(sap_real)) > 0)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’:
alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9869 |       curr = curr + 1 + offset;
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF alnread.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function ‘DoesSeqStringMatchBsp’:
acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
  201 |   Int4 ctr, pos = 0, i, len, seq_len;
      |                              ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function]
 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq)
      |            ^~~~~~~~~~~~~~~~~~~~~
aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function]
  276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function]
  247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function]
  134 | static int s_IsGapChar (char ch, char *gap_chars)
      |            ^~~~~~~~~~~
aceread.c: In function ‘s_ReadContig’:
aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1477 |         if (linestring != NULL) free (linestring);
      |            ^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdentrez.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function]
  283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
      |                       ^~~~~~~~~~~~~
cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function]
  310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
      |                       ^~~~~~~~~~~~~~
cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function]
 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
      |                       ^~~~~~~~~~~~~
cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function]
 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
      |                          ^~~~~~~~~~~~~~~
cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable]
  307 | static AsnTypePtr  BIOSEQ_id_E = NULL;
      |                    ^~~~~~~~~~~
cdentrez.c: In function ‘CdEntrezMergeTerm’:
cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2675 |           *totl = total;
      |           ~~~~~~^~~~~~~
cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2672 |           *spcl = special;
      |           ~~~~~~^~~~~~~~~
cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2640 |     cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdLinkUidList’:
cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  938 |  return count;
      |         ^~~~~
cdentrez.c: In function ‘CdTermListByTerm’:
cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1036 |    rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
In function ‘strncpy’,
    inlined from ‘FindTermNode’ at cdentrez.c:1813:11,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:617:14,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:600:24:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntTLAddTerm’:
cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1895 |             if (scanOk && total > 0) {
      |                 ~~~~~~~^~~~~~~~~~~~
cdentrez.c:1787:13: note: ‘total’ was declared here
 1787 |   Int4      total;
      |             ^~~~~
cdentrez.c: In function ‘CdEntrezFindTerm’:
cdentrez.c:1123:3: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1123 |   CdTermFree(ctp);
      |   ^~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntMedlineEntryListGet’:
cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2720 |      cd3_CdDocAsnClose(aip);
      |      ^~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdSeqSumAsnRead’:
cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3424 |             sprintf (cds, " cds%d", (int) proteins);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c:3503:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3503 |       sprintf (caption, "%s, %s", author, year);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 51 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdromlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdromlib.c:73:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces]
  600 | struct CdFInfo _finfo[] = {
      |                           ^
  601 |  "", 0, 0,
      |  {       }
  602 |  "hca", MAGIC_hca, FORMAT_hca,
      |  {                           }
  603 |  "sum", MAGIC_sum, FORMAT_sum,
      |  {                           }
  604 |  "lnk", MAGIC_lnk, FORMAT_lnk,
      |  {                           }
  605 |  "ofs", MAGIC_ofs, FORMAT_ofs,
      |  {                           }
  606 |  "oix", MAGIC_oix, FORMAT_oix,
      |  {                           }
  607 |  "trm", MAGIC_trm, FORMAT_trm,
      |  {                           }
  608 |  "tix", MAGIC_tix, FORMAT_tix,
      |  {                           }
  609 |  "pst", MAGIC_pst, FORMAT_pst,
      |  {                           }
  610 |  "inf", MAGIC_inf, FORMAT_inf
      |  {
  611 | };
      | }
cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces]
  614 | struct CdDirInfo _dir[] = {
      |                           ^
cdnewlib.c: In function ‘cd3_CdDocAsnOpen’:
cdnewlib.c:1342:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1342 |     return (AsnIo*) CatastrophicFailure(1);
      |            ^
cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable]
 1327 |   char *fdir = NULL;
      |         ^~~~
cdnewlib.c: In function ‘UidIndex_ReadPage’:
cdnewlib.c:1937:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1937 |   return (long*)CatastrophicFailure(1);
      |          ^
cdnewlib.c:1945:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1945 |   return (long*)CatastrophicFailure(1);
      |          ^
cdnewlib.c: In function ‘CdDevice_Init’:
cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable]
 2739 |  int cd_num;
      |      ^~~~~~
At top level:
cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function]
 3605 | static void Cache_Purge (Cache *cache)
      |             ^~~~~~~~~~~
cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function]
 3592 | static void* Cache_Peek (Cache *cache, long id)
      |              ^~~~~~~~~~
cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function]
 3569 | static int Cache_Touch (Cache *cache, long id)
      |            ^~~~~~~~~~~
cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function]
 3506 | static int Cache_Delete (Cache *cache, long id)
      |            ^~~~~~~~~~~~
cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable]
  638 | static DivInfo * _div;
      |                  ^~~~
cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable]
  582 | static char * _empty_string = "";
      |               ^~~~~~~~~~~~~
cdnewlib.c: In function ‘trmncmp’:
cdnewlib.c:2375:5: warning: ‘c1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2375 |  if (c1 == '/')
      |     ^
cdnewlib.c:2362:13: warning: ‘c2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2362 |  int i, c1, c2;
      |             ^~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_FileBuildPath.part.0’ at cdnewlib.c:2679:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=]
cdnewlib.c: In function ‘UnixFileGets’:
cdnewlib.c:1509:6: warning: ‘ch’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1509 |   if (ch == '\0') {
      |      ^
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c: In function ‘TrmIndex_Lookup’:
cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |                           ^~~~~~~~~~~~
cdnewlib.c:2168:6: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |      ^
cdnewlib.c:2136:14: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2136 |  int lo, hi, mid, len, d;
      |              ^~~
cdnewlib.c: In function ‘UidIndex_Lookup’:
cdnewlib.c:1956:15: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1956 |  long *page, *p;
      |               ^
cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF casn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from casn.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdconfig.c:75:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:58,
                 from cdconfig.c:75:
cdconfig.c: In function ‘ChangeMedia’:
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’
  144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd)  FALSE
      |                                                                            ^~~~~
cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’
  941 |                             EjectCd(toBeEjected->entrez_info->volume_label,
      |                             ^~~~~~~
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’
  145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd)                 FALSE
      |                                                                            ^~~~~
cdconfig.c:960:17: note: in expansion of macro ‘MountCd’
  960 |                 MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
      |                 ^~~~~~~
cdconfig.c: At top level:
cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function]
  191 | static void     UnMarkLRUineligible       PROTO((void));
      |                 ^~~~~~~~~~~~~~~~~~~
cdconfig.c: In function ‘EntrezInfoMerge’:
cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1257 |                                     besttype->fields[f].num_terms;
      |                                     ~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/cdrom.h:9,
                 from objentr.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentr.c: In function ‘CdRomAsnLoad’:
objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  170 |     if (loaded)
      |     ^~
objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  172 |         loaded = TRUE;
      |         ^~~~~~
objentr.c: In function ‘DocSumAsnRead’:
objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  970 |    AsnReadFunc func;
      |                ^~~~
objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable]
  969 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function]
  806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
      |                       ^~~~~~~~~~~~~~~~~~~~~~
objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function]
  771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
objentr.c: In function ‘EntrezInfoAsnRead’:
objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  392 |    EntrezDivInfo_AsnRead(div++,stream,atp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  763 |  link->datasize = (int) val.intvalue;
      |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
objentr.c:240:18: note: ‘link’ was declared here
  240 |  EntrezLinkInfo *link;
      |                  ^~~~
objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  704 |    fld->post_type = (PostType) val.intvalue;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:239:19: note: ‘fld’ was declared here
  239 |  EntrezFieldInfo *fld;
      |                   ^~~
objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |    tinf->asntype = (char*) val.ptrvalue;
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
objentr.c:238:18: note: ‘tinf’ was declared here
  238 |  EntrezTypeInfo *tinf;
      |                  ^~~~
objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |     div->docs[i++] = val.intvalue;
      |               ~^~
objentr.c:824:7: note: ‘i’ was declared here
  824 |   int i;
      |       ^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibbutns.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibextra.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_LongToStr’:
vibfiles.c:735:19: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                   ^~~~
vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                  ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibforms.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibgroup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viblists.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmenus.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibsbars.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibslate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibtexts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibutils.c: In function ‘Nlm_VibMessageHook’:
vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  776 |   percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" );
      |             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibwndws.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawing.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapping.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF picture.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF document.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF table.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF palette.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF diagnost.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF image.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictur3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prim3d5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF viewer3d.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vibmouse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF netscape.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF imagelst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF treeview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
treeview.c: In function ‘getNodeLength’:
treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  177 |     length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size);
      |             ^
treeview.c: In function ‘getIconId’:
treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  187 |     a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size);
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                              ^~~
shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                        ^~~
shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                  ^~~
shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                            ^~~
shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                      ^~~
shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                ^~~
shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |          ^~~
shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                               ^~
shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                          ^~
shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                     ^~
shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                ^~
shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                           ^~
shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |               ^~
shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |                     ^~
shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |               ^~~~
shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |         ^~~~
shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                                 ^~~~~~~
shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                             ^~
shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                         ^~
shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                     ^~
shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                 ^~
shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |             ^~
shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |         ^~
shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |                     ^~~~
shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |               ^~~~
shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |         ^~~~
shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable]
 3464 |     GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
      |              ^~~
shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                       ^
shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                    ^
shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                 ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF odlbox.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_LongToStr’:
vibfiles.c:735:19: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                   ^~~~
vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                  ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_Set3DColorMap’:
vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable]
 2686 |         Boolean testvisual;
      |                 ^~~~~~~~~~
vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 2685 |         int defaultdepth;
      |             ^~~~~~~~~~~~
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibutils.c: In function ‘Nlm_VibMessageHook’:
vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  776 |   percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" );
      |             ^
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
At top level:
vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function]
 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap,
      |                ^~~~~~~~~~~~~~~~~~~~
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
treeview.c: In function ‘getNodeLength’:
treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  177 |     length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size);
      |             ^
treeview.c: In function ‘getIconId’:
treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  187 |     a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size);
      |        ^
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function ‘OGL_AddCylinder3D’:
shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable]
  918 |     Nlm_Int4 iCount;
      |              ^~~~~~
shim3d.c: In function ‘OGL_AddText3D’:
shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable]
 1210 |     Nlm_Int4 Length, i;
      |                      ^
shim3d.c: In function ‘OGL_Zoom_DragMA’:
shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable]
 1770 |     TOGL_Data *OGL_Data = MAToOGL(ma);
      |                ^~~~~~~~
shim3d.c: In function ‘write_row_callback’:
shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2923 |             (((float) row) / (-nRows)) * ((end - start) / 15)
      |                                           ~~~~~^~~~~~~~
shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from shim3d.c:331:
In function ‘strncpy’,
    inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
shim3d.c: In function ‘SetOGLFont’:
shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized]
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3667:28: warning: ‘prevlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3667 |                 if (m == 0 || len < prevlen) {
      |                     ~~~~~~~^~~~~~~~~~~~~~~~
shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accentr.c: In function ‘EntrezBiostrucGet’:
accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable]
 2113 |     BiostrucPtr retval = NULL;
      |                 ^~~~~~
accentr.c: In function ‘EntrezGIForSeqIdFunc’:
accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
accentr.c: In function ‘EntrezMedlineEntryGet’:
accentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
accentr.c: In function ‘EntrezSeqEntryGet’:
accentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF accutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
In function ‘strncpy’,
    inlined from ‘EntrezFieldToString’ at accutils.c:691:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF drawseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from drawseq.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
drawseq.c: In function ‘AddFlatNodeSymbol’:
drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable]
  811 |  Int4 symbol_height = 8;
      |       ^~~~~~~~~~~~~
drawseq.c: In function ‘AddAlignBlocks’:
drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable]
  970 |  Int2 c_num;
      |       ^~~~~
drawseq.c: In function ‘AddAlignFeature’:
drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable]
 1369 |  Uint1 ptype = 0;
      |        ^~~~~
drawseq.c: In function ‘AddAlignmentMismatch’:
drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable]
 1523 |  Int4 i_right;
      |       ^~~~~~~
drawseq.c: In function ‘DrawRestrictionMap’:
drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1811 |  Boolean retval = FALSE;
      |          ^~~~~~
drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1802 |  Int4 x1, x2, center;
      |               ^~~~~~
drawseq.c: In function ‘DrawFeatures’:
drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2563 |  Int2 entityID;
      |       ^~~~~~~~
drawseq.c: In function ‘DrawOneSeqLoc’:
drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable]
 3020 |  Boolean show_seq_label = TRUE; /*show the label of a sequence*/
      |          ^~~~~~~~~~~~~~
drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable]
 3009 |  Boolean ends;
      |          ^~~~
drawseq.c: In function ‘Label_GData’:
drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable]
 3439 |  Boolean success = FALSE;
      |          ^~~~~~~
drawseq.c: In function ‘DrawEquivAlign’:
drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable]
 3594 |  Uint1 my_gray_color[]={63, 63, 63};
      |        ^~~~~~~~~~~~~
drawseq.c: In function ‘load_align_label_rectangle’:
drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable]
 4352 |  Boolean found_it;
      |          ^~~~~~~~
drawseq.c: In function ‘PicForAlignNode’:
drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable]
 4558 |  Int4 max_width, min_scale;
      |                  ^~~~~~~~~
At top level:
drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function]
 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
      |                      ^~~~~~~~~~~
drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function]
 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
      |                  ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dotmatrx.h:47,
                 from dotmatrx.c:32:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fea2seg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fea2seg.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF fstyle.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fstyle.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg1.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg2.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg2.c: In function ‘Nlm_CreateDlgGroup’:
smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable]
  631 |   Handle   toAlign[3];
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smdlg3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg3.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smtools.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smtools.c: In function ‘Nlm_CtreateToolsSM’:
smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                              ^~
smtools.c:534:29: note: directive argument in the range [-32768, 32767]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                             ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF styleman.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from styleman.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stylemui.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from stylemui.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF glbpic.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from glbpic.c:22:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
glbpic.c: In function ‘label_linear_mark’:
glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable]
 1295 |  Int4 tick_len = TICK_LEN;
      |       ^~~~~~~~
glbpic.c: In function ‘add_alignment_to_global’:
glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable]
 1552 |  Uint1 p_val;
      |        ^~~~~
At top level:
glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function]
 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
      |                ^~~~~~~~~~~~~~~
glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function]
  584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
      |                   ^~~~~~~~~~~~~~~~~~~
glbpic.c: In function ‘get_circle_label_align’:
glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2349 |  return align;
      |         ^~~~~
In file included from ../include/glbpic.h:7,
                 from glbpic.c:23:
glbpic.c: In function ‘add_alignment_to_global’:
../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  520 | #define AddTextLabel Nlm_AddTextLabel
      |                      ^~~~~~~~~~~~~~~~
glbpic.c:1560:7: note: ‘g_top’ was declared here
 1560 |  Int4 g_top, g_bottom;
      |       ^~~~~
glbpic.c: In function ‘label_circle_mark’:
glbpic.c:2479:6: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2479 |      switch(label_align)
      |      ^~~~~~
glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2474 |        if(ABS(first_left - left) < (t_width +3))
      |                          ^
glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2473 |       if(ABS(first_top - top )< (font_height+3))
      |                        ^
glbpic.c: In function ‘Draw_Global’:
glbpic.c:1943:8: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1943 |   Int4 seglen;
      |        ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF layout.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/layout.h:3,
                 from layout.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
layout.c: In function ‘LayoutNodeFlat’:
layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
  326 |  ValNodePtr vnp, next, prev;
      |                        ^~~~
layout.c: In function ‘layout_uncompressed_group’:
layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable]
 1244 |  Int2 group_start, group_stop;
      |                    ^~~~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable]
 1365 |  Int4 cur_line, y_next;
      |                 ^~~~~~
layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable]
 1364 |  Int4 segstyle, labelstyle;
      |                 ^~~~~~~~~~
layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable]
 1363 |  Boolean show_trunc = FALSE;
      |          ^~~~~~~~~~
layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 1350 |  Int2 i, k;
      |          ^
layout.c: In function ‘LayoutAlignNode’:
layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable]
 2208 |  Int4 num = 0;
      |       ^~~
At top level:
layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function]
 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
      |                ^~~~~~~~~~~~~~~~~~
layout.c: In function ‘GroupFeatNode’:
layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  636 |   prev->next = new;
      |   ~~~~~~~~~~~^~~~~
layout.c:594:35: note: ‘prev’ was declared here
  594 |  ValNodePtr my_node = NULL, curr, prev, next;
      |                                   ^~~~
layout.c: In function ‘OrderCdsmRNA’:
layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  969 |       else if(missed == m_missed && m_offset > offset)
      |              ^
layout.c:940:15: note: ‘m_missed’ was declared here
  940 |  Int2 missed, m_missed; /*number of exons missed at both end*/
      |               ^~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1503 |    p_right = MAX(right, p_right);
layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1502 |    p_left = MIN(left, p_left);
layout.c: In function ‘LayoutAlignNode’:
layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |  Int4 cur_line, next_line;
      |                 ^~~~~~~~~
layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2251 |   i = find_align_line_number(anp, vnp->next,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2252 |    label_align, &next, &line_status_list, m_right, maxScale);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saldist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/saldist.h:48,
                 from saldist.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saldist.c: In function ‘AAcode’:
saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |   ^~
saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |                             ^~
saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |   ^~
saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |                             ^~
saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |   ^~
saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |                             ^~
saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |   ^~
saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |                             ^~
saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |   ^~
saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |                             ^~
saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |   ^~
saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |                             ^~
saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |   ^~
saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |                             ^~
saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |   ^~
saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |                             ^~
saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |   ^~
saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |                             ^~
saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |   ^~
saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |                             ^~
saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |   ^~
saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |                             ^~
saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |   ^~
saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |                             ^~
saldist.c: In function ‘copy_string’:
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
 1289 |            *from++;
      |            ^~~~~~~
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
 1302 |           *from++;
      |           ^~~~~~~
saldist.c: In function ‘nss_ref_complength’:
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1479 |              if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                 ^
saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |                ^~
saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_pw_complength’:
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1572 |               if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                  ^
saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |                ^~
saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_gp_complength’:
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1675 |                  if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                     ^
saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |                ^~
saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |            ^~
saldist.c: In function ‘SortbySimProc’:
saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable]
 2139 |   SeqAlignPtr        newsalp, newsalpd;
      |                               ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function]
 1853 | static Int4Ptr PNTR  scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
      |                      ^~~~~~~~~~~~~
saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function]
 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
      |                        ^~~~~~~~~~~~~
saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function]
  999 | static Int2 AAcode(Char car)
      |             ^~~~~~
saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function]
  928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path)
      |                ^~~~~~~~~~~
saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable]
  910 | static Char *matrixlst [] = {"", "idmat",
      |              ^~~~~~~~~
saldist.c: In function ‘writematrixhalf.constprop’:
saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1225 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c: In function ‘PwDistanceItem’:
saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1151 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c:1104:19: note: ‘vnp’ was declared here
 1104 |   ValNodePtr      vnp,
      |                   ^~~
saldist.c: In function ‘SortbyLenItem’:
saldist.c:2191:14: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |      sortlst [mink] = j + 1;
      |              ^
saldist.c:2172:28: note: ‘mink’ was declared here
 2172 |   Int2               j, k, mink;
      |                            ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF saled.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from saled.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saled.c: In function ‘ReadAlignmentForSeqEntry’:
saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable]
 3310 |                     dirty = FALSE;
      |                     ^~~~~
saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable]
 3306 |   SeqAlignPtr       salp=NULL,
      |                     ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saled.c:49:
saled.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from saled.c:55:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from ../include/salfiles.h:48,
                 from salfiles.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salfiles.c: In function ‘NewFastaRead’:
salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable]
  315 |   SeqIdPtr      segsip=NULL, lastsegsip=NULL;
      |                              ^~~~~~~~~~
salfiles.c: In function ‘ReadAlignmentToStrings’:
salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable]
  664 |   Int2         nseq = 0;
      |                ^~~~
salfiles.c: In function ‘MacawRead’:
salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable]
 1257 |               vnp = NULL;
      |               ^~~
salfiles.c: In function ‘ReadLocalAlign’:
salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1444:22: note: did you mean to dereference the pointer?
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1446 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1446:19: note: did you mean to dereference the pointer?
 1446 |               if (tmp!='\0')
      |                   ^
salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1455:22: note: did you mean to dereference the pointer?
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1457 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1457:19: note: did you mean to dereference the pointer?
 1457 |               if (tmp!='\0')
      |                   ^
salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1536:22: note: did you mean to dereference the pointer?
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1538 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1538:19: note: did you mean to dereference the pointer?
 1538 |               if (tmp!='\0')
      |                   ^
salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1547:22: note: did you mean to dereference the pointer?
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1549 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1549:19: note: did you mean to dereference the pointer?
 1549 |               if (tmp!='\0')
      |                   ^
salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable]
 1370 |              tmp1;
      |              ^~~~
salfiles.c: In function ‘ImportFromFile’:
salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable]
 2072 |   SeqEntryPtr      sep = NULL;
      |                    ^~~
salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable]
 2071 |   SeqAnnotPtr      sap = NULL;
      |                    ^~~
salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’:
salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2672 |            if (SeqIdForSameBioseq(cip->sip, sip))
      |            ^~
salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2674 |               cip->bsp = bsp;
      |               ^~~
salfiles.c: In function ‘sesp_to_pept’:
salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable]
 2713 |                  bufferPtr = NULL;
      |                  ^~~~~~~~~
salfiles.c: In function ‘SaveFeatProc’:
salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 3387 |   Int2               handled;
      |                      ^~~~~~~
salfiles.c: In function ‘CCReadAnythingLoop’:
salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 3685 |   Uint2        entityID;
      |                ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function]
  501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
      |                   ^~~~~~~~~~~~~~~~~~~~~
salfiles.c: In function ‘CCDownloadProc’:
salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |   vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salfiles.c:2286:15: note: ‘new_sep’ was declared here
 2286 |   SeqEntryPtr new_sep;
      |               ^~~~~~~
salfiles.c: In function ‘NewFastaRead.constprop’:
salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  460 |   if (sip!=NULL)
      |      ^
salfiles.c: In function ‘GapFastaRead’:
salfiles.c:654:16: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  654 |                seqstr;
      |                ^~~~~~
salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  724 |            if (!startp) {
      |               ^
salfiles.c:660:16: note: ‘startp’ was declared here
  660 |   Boolean      startp;
      |                ^~~~~~
salfiles.c: In function ‘ReadLocalAlignment’:
salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1287 |   ValNodeFree (seqvnp);
      |   ^~~~~~~~~~~~~~~~~~~~
salfiles.c:1113:19: note: ‘seqvnp’ was declared here
 1113 |   ValNodePtr vnp, seqvnp;
      |                   ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from salpanel.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpanel.c: In function ‘go_to_next_to_draw’:
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
  331 |                 offsettmp;
      |                 ^~~~~~~~~
salpanel.c: In function ‘next_to_draw’:
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  471 |                 if ( curstr != NULL )
      |                    ^
salpanel.c: In function ‘AssociatePropagatedSubloc’:
salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3131 |   ValNodePtr   vnp;
      |                ^~~
salpanel.c: In function ‘FeaturePropagateForm’:
salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 4674 |   PrompT      ppt;
      |               ^~~
salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 4669 |   ButtoN      b;
      |               ^
salpanel.c: In function ‘OkToContinueWithFeatureApply’:
salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable]
 6103 |   Int4       num_missing = 0, seq_num, start_num;
      |              ^~~~~~~~~~~
salpanel.c: In function ‘DoApplyFeatureToAlignment’:
salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable]
 6219 |   Boolean                     found_null = FALSE;
      |                               ^~~~~~~~~~
salpanel.c: In function ‘ApplyFeatureToAlignment’:
salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 6421 |   ButtoN                      b;
      |                               ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salpanel.c:52:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function]
 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function]
  224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
      |             ^~~~~~~~~~~~~~~~~
salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable]
  113 | static Uint1 leftOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~
salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable]
  110 | static Uint1 rightOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~~
salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable]
  107 | static Uint1 leftOvalSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable]
  104 | static Uint1 rightOvalSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable]
  101 | static Uint1 downTriFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable]
   98 | static Uint1 upTriFillSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable]
   89 | static Uint1 ovalFillSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable]
   86 | static Uint1 diamondFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable]
   80 | static Uint1 downTriSym [] = {
      |              ^~~~~~~~~~
salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable]
   77 | static Uint1 upTriSym [] = {
      |              ^~~~~~~~
salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable]
   68 | static Uint1 ovalSym [] = {
      |              ^~~~~~~
salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable]
   65 | static Uint1 diamondSym [] = {
      |              ^~~~~~~~~~
salpanel.c: In function ‘draw_feat.isra.0.part.0’:
salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1939 |   Int4          col1;
      |                 ^~~~
salpanel.c: In function ‘on_draw’:
salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2527 |                       draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salparam.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salparam.c: In function ‘mergelst’:
salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1325 |   Boolean          val;
      |                    ^~~
salparam.c: In function ‘unmergelst’:
salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable]
 1340 |   DialogBoxDataPtr dbdp;
      |                    ^~~~
salparam.c: In function ‘FormulaDialog’:
salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable]
 1398 |   ButtoN           b1, b2, b3, b4, b5;
      |                                    ^~
salparam.c: In function ‘JK_NTPattern2Ex’:
salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable]
 1596 |   CharPtr         debug_str;
      |                   ^~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1936 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘DotPlotDialog’:
salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable]
 1973 |   ButtoN           bt1, bt2;
      |                    ^~~
salparam.c: In function ‘DotPlotItem’:
salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 2004 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘SelectSeqFunc’:
salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 2308 |   CharPtr          str;
      |                    ^~~
salparam.c: In function ‘HighlightSelectionFunc’:
salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable]
 2344 |   SeqEditViewFormPtr wdp;
      |                      ^~~
salparam.c: In function ‘PropagateFeatureProc’:
salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable]
 2623 |   Uint2            eID, iID,
      |                         ^~~
salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable]
 2614 |   SeqAlignPtr      salp;
      |                    ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salparam.c:58:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salparam.c: In function ‘FileInProc’:
salparam.c:782:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  782 |          fscanf(fp, "%d %ld", &n, &lens);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1951 |         bsp = (BioseqPtr) sep->data.ptrvalue;
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘SalsaExportDialog’:
salparam.c:2258:19: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 2258 |   sprintf (str2, "%ld", (long) adp->int4value);
      |                   ^~~
salparam.c:2258:18: note: directive argument in the range [-2147483648, 2147483647]
 2258 |   sprintf (str2, "%ld", (long) adp->int4value);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2261:19: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 2261 |   sprintf (str2, "%ld", (long) adp->int4value2);
      |                   ^~~
salparam.c:2261:18: note: directive argument in the range [-2147483648, 2147483647]
 2261 |   sprintf (str2, "%ld", (long) adp->int4value2);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘PropagateFeatDialog’:
salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                                ^~~
salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                                ^~~
salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salsa.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsa.c: In function ‘SelectSubsProc’:
salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable]
 2140 |   SeqEditViewProcsPtr svpp=NULL;
      |                       ^~~~
salsa.c: In function ‘SetSeqInfo’:
salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable]
 3195 |   ValNodePtr    vnp = NULL;
      |                 ^~~
salsa.c: In function ‘SetupAlignDataSap’:
salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable]
 3410 |   Uint2        entityID_sap;
      |                ^~~~~~~~~~~~
salsa.c: In function ‘get_bestpos_formerge’:
salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable]
 4304 |                 insert_after=FALSE;
      |                 ^~~~~~~~~~~~
salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable]
 4303 |   Boolean       insert_before=FALSE,
      |                 ^~~~~~~~~~~~~
salsa.c: In function ‘CreateSeqAlignViewForm’:
salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable]
 4689 |   ButtoN             mergebtn;
      |                      ^~~~~~~~
salsa.c: In function ‘AlgEditFunc’:
salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable]
 4976 |   SeqEditViewFormPtr  wdp = NULL;
      |                       ^~~
salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable]
 4974 |   WindoW              w = NULL;
      |                       ^
salsa.c: In function ‘OldAlignmentEditor’:
salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 5106 |   Int2         rval;
      |                ^~~~
salsa.c: In function ‘LaunchAnnotAlignEditor’:
salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5293 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditor’:
salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5310 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignViewer’:
salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5327 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop’:
salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5342 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop2’:
salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5359 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘InsertSeqProc’:
salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable]
 5538 |   ButtoN insbt, cnclbt;
      |                 ^~~~~~
salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable]
 5536 |   PrompT insprt;
      |          ^~~~~~
salsa.c: In function ‘SeqAlignBestHit’:
salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5605 |    Int4              last;
      |                      ^~~~
salsa.c: In function ‘SeqAlignStartUpdate’:
salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 5791 |   Int2        index, k, j;
      |                      ^
salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5790 |               start;
      |               ^~~~~
salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable]
 5789 |   Int4        len_sum,
      |               ^~~~~~~
salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable]
 5786 |   Int4Ptr     lenp,
      |               ^~~~
salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable]
 5785 |   SeqIdPtr    pre, sip, next;
      |               ^~~
salsa.c: In function ‘CCNormalizeSeqAlignId’:
salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable]
 6746 |   Int4                gi = 0;
      |                       ^~
salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable]
 6745 |   CharPtr       missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
      |                 ^~~~~~~~~~~
salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable]
 6744 |   CharPtr       missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
      |                 ^~~~~~~~~~~~~~~~
salsa.c: In function ‘ValidateSeqAlignandACCEx’:
salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 7106 |   MsgAnswer    ans;
      |                ^~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salsa.c:68:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function]
   87 | static void InsertSequenceDlg (ButtoN b);
      |             ^~~~~~~~~~~~~~~~~
salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function]
 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function]
 2360 | static void MakeCdRgnrProc (IteM i) {
      |             ^~~~~~~~~~~~~~
salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function]
 2356 | static void MakeCdRgnProc (IteM i) {
      |             ^~~~~~~~~~~~~
salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function]
 1760 | static void AcceptCloseWindowButton (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
In file included from salsa.c:52:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportFASTAForUnselectedUpdates’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6350:23: note: ‘fp’ was declared here
 6350 |   FILE               *fp;
      |                       ^~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportBadAlignments’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6318:23: note: ‘fp’ was declared here
 6318 |   FILE               *fp;
      |                       ^~
salsa.c: In function ‘SeqAlignBestHit.isra.0’:
salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5748 |          *nonly = -(beg+end);
      |                    ~~~~^~~~~
salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c: In function ‘BioseqEditMsgFunc’:
salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  912 |         ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
      |                                                ~~~^~~~~~~~~~~~
salsa.c:890:20: note: ‘anp’ was declared here
  890 |   AlignNodePtr     anp;
      |                    ^~~
salsa.c: In function ‘DeleteProc’:
salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1955 |               if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0)
      |                                                                                                                                                                  ~~~^~~~~~
salsa.c: In function ‘SkipThisWindowProc’:
salsa.c:4591:6: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4591 |      LaunchAlignViewer(salp);
      |      ^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqfltr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqfltr.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqfltr.c: In function ‘FilterSeq’:
seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |         sgp->values = (Pointer) fptr;
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgraph.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgraph.c: In function ‘EndPointDialogToEndPointValNode’:
seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return (Pointer) eplist;
      |          ^~~~~~~~~~~~~~~~
seqgraph.c: In function ‘SeqLocGraphViewProc’:
seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1136 |   while (eplist != NULL)
      |         ^
seqgraph.c: In function ‘CutOffProc’:
seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  911 |       val = fval/2;
      |       ~~~~^~~~~~~~
seqgraph.c:841:14: note: ‘fval’ was declared here
  841 |   FloatHi    fval;
      |              ^~~~
seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1018 |   while (eplist != NULL)
      |         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgrphx.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function]
  301 | static void CleanupGCFilterForm  (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~
seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function]
  152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function]
   28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqmtrx.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function]
  387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype)
      |                    ^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpcc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqpcc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpcc.c: In function ‘PCCProc’:
seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |   if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqanal.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqanal.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aacomp.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from aacomp.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function]
   86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
      |                    ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqscrl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from ../include/seqscrl.h:4,
                 from seqscrl.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF valdlg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vibforms.h:46,
                 from valdlg.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valdlg.c: In function ‘ClickRulesDoc’:
valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable]
  373 |   Int2               scroll_pos = 0;
      |                      ^~~~~~~~~~
valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable]
  372 |   BaR                sb_vert = NULL;
      |                      ^~~~~~~
valdlg.c: In function ‘UpdateRuleList’:
valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable]
  479 |   CommentRulePtr new_cr, last_cr = NULL;
      |                          ^~~~~~~
valdlg.c: In function ‘SaveRuleChanges’:
valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
  540 |   CommentSetDlgPtr    dlg;
      |                       ^~~
valdlg.c: In function ‘LaunchCommentRulesEditor’:
valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable]
  553 |   MenU                m;
      |                       ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsm.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsm.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsm.c: In function ‘VSMDrawAbout’:
vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1436 |     if (vsmp->title != NULL)
      |     ^~
vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1438 |  if (vsmp->aboutinfo != NULL)
      |  ^~
vsm.c: In function ‘VSMAboutProc’:
vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 1466 |  PaneL p;
      |        ^
vsm.c: In function ‘VSeqMgrCreateMainWindow’:
vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 1569 |  ObjMgrPtr omp;
      |            ^~~
vsm.c: In function ‘VSeqMgrPopulateMain’:
vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable]
 1710 |  AsnTypePtr atp;
      |             ^~~
vsm.c: In function ‘VSMGatherPictProc’:
vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 2193 |  BioseqSetPtr bssp;
      |               ^~~~
vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable]
 2188 |  Int4 top, lineheight, left, bottom, width, maxwidth;
      |                              ^~~~~~
vsm.c: In function ‘VSMAddPictureToEntity’:
vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2821 |  Pointer ptr;
      |          ^~~
vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2820 |  ValNodePtr vnp;
      |             ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmfile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsmfile.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmfile.c: In function ‘VSMGenericBinAsnOpen’:
vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  259 |     ButtoN b;
      |            ^
vsmfile.c: In function ‘VSMGenericFastaSave’:
vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  395 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’:
vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  527 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMSaveSetsAsFiles’:
vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 1368 |   OMProcControlPtr ompcp;
      |                    ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vsmutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmutil.c: In function ‘GetDocPosForError’:
vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1743 |   Int2           val;
      |                  ^~~
At top level:
vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function]
 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
      |                ^~~~~~~~~~~~~~~~
vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function]
  387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
      |                    ^~~~~~~~~~~~~~~~~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2255:5: note: within this loop
 2255 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2222:5: note: within this loop
 2222 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2296:5: note: within this loop
 2296 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~~~~~~~^~~
vsmutil.c:612:7: note: within this loop
  612 |       for (sev = SEV_NONE; sev <= SEV_MAX; sev++) {
      |       ^~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2619:9: note: within this loop
 2619 |         for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |         ^~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~^~~~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘ShowValidateDoc’:
vsmutil.c:2758:61: warning: ‘      REJECT: ’ directive writing 14 bytes into a region of size between 13 and 43 [-Wformat-overflow=]
 2758 |   sprintf (str, "INFO: %ld      WARNING: %ld      ERROR: %ld      REJECT: %ld",
      |                                                             ^~~~~~~~~~~~~~
vsmutil.c:2758:17: note: directive argument in the range [-2147483648, 2147483647]
 2758 |   sprintf (str, "INFO: %ld      WARNING: %ld      ERROR: %ld      REJECT: %ld",
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 53 and 93 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvgraph.c: In function ‘UDV_click_item’:
udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable]
  877 | Boolean IsTransNeeded=FALSE;
      |         ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_SendBSPSelectMsg’:
udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1230 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable]
 1226 | Int4        first_bsp_coord, bsp_coord_old,old_pos;
      |                              ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_helixDNA’:
udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable]
 1827 | Int2 cxChar_2,cyChar_2;
      |               ^~~~~~~~
udvgraph.c: In function ‘draw_logo’:
udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable]
 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
      |                                      ^~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_minus’:
udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2337 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
 2332 |     numivals2=0,
      |     ^~~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_plus’:
udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2461 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_panel’:
udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4111 |         if(vdp->vgp->MasterViewer == SAMVIEWDDV)
      |         ^~
udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4113 |             Row = ViewMgr_GetRow(svpp, vdp->userkey);
      |             ^~~
udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable]
 4041 | ValNodePtr          vnp_seqinfo=NULL;
      |                     ^~~~~~~~~~~
udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                             ^~~~~~~~~~
udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                     ^~~~~~~
At top level:
udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function]
 3921 | static Int4  UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
      |              ^~~~~~~~~~~~~~~~
udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function]
 3433 | static void  UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function]
 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
      |             ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function]
  971 | static void  UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function]
  948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from udvgraph.c:180:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
udvgraph.c: In function ‘UDV_GetCurrentDispRange’:
udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  638 |  *from_bsp=pgp->StartLetter;
      |            ~~~^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_select_feature’:
udvgraph.c:813:25: warning: ‘ [from ’ directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
  813 |        sprintf(szTmp,"%s [from %d to %d]. ",
      |                         ^~~~~~~
udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647]
  813 |        sprintf(szTmp,"%s [from %d to %d]. ",
      |                      ^~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 291 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:808:25: warning: ‘ [from ’ directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
  808 |        sprintf(szTmp,"%s [from %d to %d in %d segments]. ",
      |                         ^~~~~~~
udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647]
  808 |        sprintf(szTmp,"%s [from %d to %d in %d segments]. ",
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647]
udvgraph.c:808:22: note: directive argument in the range [2, 32767]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 31 and 309 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_Draw_features’:
udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3196 |     stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
      |                                               ^
udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3182 |     start2=_max_(pgp->StartLetter,context->ivals[idx1]);
      |                                                 ^
In file included from ../include/udviewer.h:225,
                 from udvgraph.c:177:
../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  187 | #define _max_(a,b)        ((a)>=(b)?(a):(b))
      |                                        ^
udvgraph.c:2803:21: note: ‘stop_x2’ was declared here
 2803 | Int2 start_x,stop_x,stop_x2,  /*id. but in pixels*/
      |                     ^~~~~~~
udvgraph.c: In function ‘UDV_ClickProc’:
udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |        UDV_SelectFeatInFeatDlg(vmp,entityID,itemID);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvopen.c:101:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvopen.c: In function ‘UDV_FileOpen’:
udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |                ^~
udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |           ^
udvopen.c: In function ‘UDV_CreateListBioseqDlg’:
udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress]
 1180 |     if (szName){
      |         ^~~~~~
udvopen.c: In function ‘UDV_FOpenCancelProc’:
udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  792 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
udvopen.c: In function ‘UDV_analyze_SEP_for_open’:
udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  325 |  vmp->entityID=entityID;
      |  ~~~~~~~~~~~~~^~~~~~~~~
udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  327 |  vmp->dataptr=dataptr;
      |  ~~~~~~~~~~~~^~~~~~~~
udvopen.c: In function ‘UDV_FOpenAcceptProc’:
udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  855 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF udvpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvpanel.c:197:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvpanel.c: In function ‘UDV_GotoBtnProc’:
udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable]
 2080 | Int4          iValue,old_ivalue,line_num,from_bsp,to_bsp,
      |                      ^~~~~~~~~~
udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2079 | ValNodePtr    vnp;
      |               ^~~
udvpanel.c: In function ‘CreateMainControls’:
udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 2165 | Int2   cxChar,cyChar,Margins;
      |        ^~~~~~
udvpanel.c: In function ‘UDV_SearchFeatForKey’:
udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3478 | ButtoN    b1,b2;
      |              ^~
At top level:
udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function]
 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/udviewer.h:220,
                 from udvpanel.c:197:
udvpanel.c: In function ‘InitFeaturesListDlg’:
../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  342 | #define PopupItem Nlm_PopupItem
      |                   ^~~~~~~~~~~~~
udvpanel.c:3194:7: note: ‘pop’ was declared here
 3194 | PopuP pop;
      |       ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/dotviewer.h:15,
                 from dotvibrant.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotvibrant.c: In function ‘DOT_DisplayHits’:
dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable]
  564 |   Int4           ycomp, xcomp;
      |                  ^~~~~
dotvibrant.c: In function ‘DOT_VscrlProc’:
dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  918 |   Int2         visLines, vmargin, hmargin;
      |                ^~~~~~~~
dotvibrant.c: In function ‘DOT_HscrlProc’:
dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  972 |   Int2         dx, visLines, offset, hmargin, vmargin;
      |                    ^~~~~~~~
dotvibrant.c: In function ‘DOT_VCrossHairs’:
dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1402 |   Int4   cursor_size =15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_HCrossHairs’:
dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1427 |   Int4  cursor_size = 15;
      |         ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_MoveCrossHairs’:
dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 1453 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1452 |   Int4   cursor_size = 15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_DrawXAxis’:
dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable]
 1532 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c: In function ‘DOT_DrawYAxis’:
dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable]
 1642 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable]
 1641 |   Int4         pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
      |                                                       ^~~~
dotvibrant.c: In function ‘DOT_SVDisplayDiags’:
dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                            ^~~~~~~~
dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                      ^~~~
dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 1766 |   Int4               width, height;
      |                      ^~~~~
dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                               ^~~~~~~
dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                      ^~~~~~~
dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable]
 1762 |   Int4               stop, cutoff=0, q_start, s_start, length;
      |                            ^~~~~~
dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable]
 1760 |   SegmenT            seg1, seg2, seg3, seg4;
      |                                  ^~~~
dotvibrant.c: In function ‘DOT_FillNewSeqBufs’:
dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable]
 2197 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c: In function ‘DOT_InitCInfo’:
dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable]
 2258 |   Char       colBuf[12]={""};
      |              ^~~~~~
dotvibrant.c: In function ‘DOT_SVDisplaySequence’:
dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable]
 2379 |   Int4Ptr PNTR matrix;
      |                ^~~~~~
dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable]
 2367 |   Int4       vis_2, buf_len;
      |              ^~~~~
dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable]
 2364 |   Int4       prot_threshold=0, bloc_cntr;
      |              ^~~~~~~~~~~~~~
dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable]
 2350 |   DOTMainDataPtr mip1, mip2;
      |                        ^~~~
dotvibrant.c: In function ‘DOT_SVClickProc’:
dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable]
 2807 |   Int2          handled=0;
      |                 ^~~~~~~
dotvibrant.c: In function ‘DOT_ResizeFeatWindow’:
dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                               ^~~~~~~~~~~~~
dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                   ^~~~~~~~~~~
dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                     ^~~
dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’:
dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |                         ^~~~~~~~~~~
dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |            ^~~~~~~~~~~
dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable]
 3095 |   Int2     height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
      |                                                   ^~~~~~~~
dotvibrant.c: In function ‘DOT_HideFeatDlg’:
dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3745 |     ButtoN b;
      |            ^
dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’:
dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable]
 4031 |   DOTMainDataPtr mip;
      |                  ^~~
dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |                            ^~~~
dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |             ^~~~
dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |                  ^~~
dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |             ^~~
dotvibrant.c: In function ‘DOT_UpdateDataRects’:
dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |                   ^~
dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |               ^~
dotvibrant.c: In function ‘DOT_MsgFunc’:
dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable]
 4215 |   DOTVibDataPtr vdp2 = NULL;
      |                 ^~~~
dotvibrant.c: In function ‘DOT_ReleaseProc’:
dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |                                ^~~~~~~~~~
dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |               ^~~~~~~~~~
dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable]
 4371 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable]
 4370 |   DOTMainDataPtr mip1=NULL;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_StartDOTPLOT’:
dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable]
 4891 |   DOTVibDataPtr       vdp;
      |                       ^~~
dotvibrant.c: In function ‘DOT_DoZoom’:
dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 5106 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_ZoomProc’:
dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable]
 5204 |   WindoW              temport, w;
      |                       ^~~~~~~
dotvibrant.c: In function ‘AlnMgr2GetNextLine’:
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
 5315 |   *n++;
      |   ^~~~
dotvibrant.c: In function ‘DOT_GetAlign’:
dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
 5332 |   Int4         x1, y1, x2, y2, numlines=0, n=0, i=0;
      |                                            ^
dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’:
dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable]
 5565 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’:
dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable]
 5681 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable]
 5680 |   Int4         numsaps = 0, numlines = 0;
      |                ^~~~~~~
dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable]
 5678 |   SeqAlignPtr  sap=NULL, salp=NULL, sap_tmp=NULL;
      |                                     ^~~~~~~
dotvibrant.c: In function ‘DOT_DoBlast’:
dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable]
 5918 |   Char                eval[11]={""};
      |                       ^~~~
dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 5917 |   Boolean             is_local;
      |                       ^~~~~~~~
dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable]
 5915 |   Uint2               entityID=0;
      |                       ^~~~~~~~
dotvibrant.c: In function ‘DOT_CreateWindowDetails’:
dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                           ^~~
dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                      ^~~
dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable]
 6207 |   GrouP          g, g1, g2;
      |                     ^~
dotvibrant.c: In function ‘DOT_ResizeMainWindow’:
dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 6273 |   Int2        height, width, in , gap;
      |                                   ^~~
dotvibrant.c: In function ‘DOT_FindAlignment’:
dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |                             ^~~~~~~~
dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |             ^~~~~~~~
dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 6661 |   DOTSelDataPtr data;
      |                 ^~~~
dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’:
dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 6792 |    Uint4                itemID=0;
      |                         ^~~~~~
dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’:
dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable]
 6873 |    Int4             indextype;
      |                     ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function]
 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function]
 6346 | static void DOT_NewAnalysis (ButtoN b)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function]
 5894 | static FloatHi DOT_get_eval(Int4 exp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function]
 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function]
 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
      |                ^~~~~~~~~~~~~~~~~~
dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function]
 4767 | static void DOT_FeatAnalysisProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~
dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function]
 4749 | static void DOT_GetInfoProc (IteM i)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function]
 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~
dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function]
 3688 | static void DOT_HideAcceptProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function]
 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
      |             ^~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function]
 2954 | static void DOT_SVChangeLabels (GrouP g)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function]
 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
      |                ^~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’:
dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5087 |   SeqPortFree(spp);
      |   ^~~~~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’:
dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:23: note: ‘strand2’ was declared here
 2380 |   Uint1      strand1, strand2;
      |                       ^~~~~~~
dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:14: note: ‘strand1’ was declared here
 2380 |   Uint1      strand1, strand2;
      |              ^~~~~~~
dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2561 |                       sBuf[c]=*residue_names[(int)*s];
      |                                             ^
dotvibrant.c:2378:16: note: ‘residue_names’ was declared here
 2378 |   CharPtr PNTR residue_names;
      |                ^~~~~~~~~~~~~
dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:42: note: ‘s_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                          ^~~~~
dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:35: note: ‘q_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                   ^~~~~
dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2504 |   hit_stop+=hit_stop/10;
      |             ~~~~~~~~^~~
dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                         ^~~~~~~~
dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2572 |                           DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:14: note: ‘hit_start’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |              ^~~~~~~~~
dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |                ^
dotvibrant.c:2367:21: note: ‘buf_len’ was declared here
 2367 |   Int4       vis_2, buf_len;
      |                     ^~~~~~~
dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2545 |               if (is_na)
      |                  ^
dotvibrant.c:2361:27: note: ‘is_na’ was declared here
 2361 |   Boolean    ambig=FALSE, is_na;
      |                           ^~~~~
dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |   ~~~^~~~~~~~~~~~
dotvibrant.c:2357:14: note: ‘s’ was declared here
 2357 |   Uint1Ptr   s;
      |              ^
dotvibrant.c:2626:16: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2626 |               q++;
      |               ~^~
dotvibrant.c:2356:14: note: ‘q’ was declared here
 2356 |   Uint1Ptr   q;
      |              ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil1.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil1.c: In function ‘IsAuthList’:
dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 2962 |   Int4 len;
      |        ^~~
dlgutil1.c: In function ‘TestIntervalEditor’:
dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable]
 5324 |   Int2             fuzz_to;
      |                    ^~~~~~~
dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable]
 5323 |   Int2             fuzz_from;
      |                    ^~~~~~~~~
dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable]
 5322 |   Boolean          isInterval, isPoint, fuzz_before, fuzz_after;
      |                                         ^~~~~~~~~~~
dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’:
dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable]
 7254 |   long int     val;
      |                ^~~
dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable]
 7250 |   CharPtr      ptr;
      |                ^~~
dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable]
 7247 |   Int2         num_digits;
      |                ^~~~~~~~~~
dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable]
 7246 |   Boolean      notallzero;
      |                ^~~~~~~~~~
dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable]
 7243 |   Boolean      leadingzero;
      |                ^~~~~~~~~~~
dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable]
 7238 |   Boolean      alldigits;
      |                ^~~~~~~~~
dlgutil1.c: In function ‘CreateStandardEditMenu’:
dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
 9427 |   IteM i;
      |        ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function]
 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
      |                         ^~~~~~~~~~~~~~~~~~~
dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function]
 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~~~~
dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function]
 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil2.c: In function ‘CreateImportFields’:
dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable]
 1401 |   Boolean         is_gap = FALSE;
      |                   ^~~~~~
dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’:
dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |           ^
dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |        ^
dlgutil2.c: In function ‘GetTableDisplayCell’:
dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
 3951 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
dlgutil2.c: In function ‘NewCreateInferenceDialog’:
dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable]
 7633 |   FonT            fnt;
      |                   ^~~
dlgutil2.c: In function ‘ClickableListOnKey’:
dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable]
10479 |   ClickableListPtr clp;
      |                    ^~~
dlgutil2.c: In function ‘GetSelectedClickableListText’:
dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable]
11151 |   Int2             item, row, col, char_offset;
      |                                    ^~~~~~~~~~~
dlgutil2.c: In function ‘AutomatchFeatures’:
dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable]
14210 |   SeqIntPtr                s1, s2, s3;
      |                                    ^~
At top level:
dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function]
12342 | static Boolean ParseMultiListQualOk (CharPtr val)
      |                ^~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function]
10336 | static void ClickClickableListItem (DoC d, PoinT pt)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function]
10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
      |             ^~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function]
 8854 | static Int4 GetCategoryNumFromName (CharPtr category)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function]
 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp)
      |                ^~~~~~~~~~~~~~~~~
dlgutil2.c: In function ‘PopulateDayPopup’:
dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
11438 |       sprintf (day, "%d", i);
      |                        ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from e2trmlst.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2trmlst.c: In function ‘ReadAFew’:
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 2230 |   for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
      |                                                             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF e2docsum.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2docsum.c: In function ‘FormatCdsSeq’:
e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1523 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
e2docsum.c: In function ‘FetchSequence’:
e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable]
 1591 |   CharPtr      currDbName;
      |                ^~~~~~~~~~
e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1580 |   Uint1        group_segs = 0;
      |                ^~~~~~~~~~
e2docsum.c: In function ‘SaveDocsumProject’:
e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3606 |   SummFormPtr  sfp;
      |                ^~~
e2docsum.c: In function ‘RetrieveGeneration’:
e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable]
 4135 |   Entrez2InfoPtr  e2ip;
      |                   ^~~~
e2docsum.c: In function ‘SetupMenus’:
e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
 4849 |   ChoicE       c;
      |                ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/bspview.h:48,
                 from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strucapi.h:52,
                 from e2docsum.c:62:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2981:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2981 |   system (cmmd);
      |   ^~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin’:
e2docsum.c:2838:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2838 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function]
 2883 | static Int4 GetBiostrucMaxModels (void)
      |             ^~~~~~~~~~~~~~~~~~~~
e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function]
 2850 | static Int4 GetBiostrucComplexity (void)
      |             ^~~~~~~~~~~~~~~~~~~~~
e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable]
 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
      |                    ^~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 2980 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin.isra.0’:
e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=]
 2837 |   sprintf (cmmd, "sequin -x < %s &", path);
      |                               ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2graphic.c: In function ‘ParseFilterItem’:
asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
 1191 |   Int2           i, j;
      |                     ^
asn2graphic.c: In function ‘GeneProductsLayoutInternal’:
asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable]
 3730 |   Int4                    newLeft, featureStart, rowMaxRight;
      |                                    ^~~~~~~~~~~~
asn2graphic.c: In function ‘ScaleSntDrawProc’:
asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable]
 4402 |   RecT                     r;
      |                            ^
asn2graphic.c: In function ‘GphSentProc’:
asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
 4997 |   Int4         scaleY;
      |                ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2graphic.c: In function ‘ParseConfigFile’:
asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=]
 1198 |   sprintf (sect, "filters.%s", filterItemName);
      |                           ^~
......
 1500 |       FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP);
      |                              ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  946 |   sprintf (sect, "%s.master", appearanceNameInFile);
      |                     ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1006 |   sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile);
      |                             ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1008 |   sprintf (outputBuffer, "%s.imp", appearanceNameInFile);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1011 |     sprintf (outputBuffer, "%s.import", appearanceNameInFile);
      |                               ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 129) into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF medview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/medview.h:48,
                 from medview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medview.c: In function ‘PrintMedlineViewForm’:
medview.c:588:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from bspview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gbfview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbfview.c: In function ‘RelModeFailText’:
gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable]
 1004 |   Boolean            hasPubs;
      |                      ^~~~~~~
gbfview.c: In function ‘PopulateFlatFile’:
gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable]
 1292 |   Boolean            doColors;
      |                      ^~~~~~~~
gbfview.c: In function ‘PopulateFasta’:
gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 1717 |     if (ISA_na (bsp->mol)) {TRUE,
      |                                 ^
gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1649 |   Uint1            group_segs;
      |                    ^~~~~~~~~~
gbfview.c: In function ‘PopulateAsnOrXML’:
gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable]
 1972 |   Boolean      lookupFar = FALSE;
      |                ^~~~~~~~~
gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable]
 1971 |   Boolean      lockFar = FALSE;
      |                ^~~~~~~
gbfview.c: In function ‘PrintFlatFileFastaOrAsn’:
gbfview.c:2494:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2494 |     system (cmmd);
      |     ^~~~~~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:667:21: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  667 |                     system (cmmd);
      |                     ^~~~~~~~~~~~~
At top level:
gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function]
 1234 | static void LookForFarProds (
      |             ^~~~~~~~~~~~~~~
gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function]
 1215 | static void LookForFarBsp (
      |             ^~~~~~~~~~~~~
gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function]
  944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~
gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function]
  289 | static Boolean ColorIcon (
      |                ^~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  666 |                     sprintf (cmmd, "open %s", path);
      |                                          ^~   ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gphview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphview.c: In function ‘ReleaseAlignment’:
gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1306 |   SeqLocPtr      slp;
      |                  ^~~
gphview.c: In function ‘DrawAlignOnAllSequences’:
gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable]
 1391 |  ValNode vn;
      |          ^~
gphview.c: In function ‘ReleaseDesktop’:
gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable]
 1836 |   SegmenT        seg;
      |                  ^~~
gphview.c: In function ‘AutoScrollGeneName’:
gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
 2100 |   Int2              num;
      |                     ^~~
gphview.c: In function ‘DisplayGeneChoiceWindow’:
gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2426 |   PrompT             p;
      |                      ^
gphview.c: In function ‘PrintGraphical’:
gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable]
 3268 |   MsgAnswer  ans;
      |              ^~~
gphview.c: In function ‘PopulateAsn2GphGraphic’:
gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable]
 3868 |   Int4         min;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gphdraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gphdraw.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphdraw.c: In function ‘GraphSentProc’:
gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
  195 |   Int4           scaleY;
      |                  ^~~~~~
gphdraw.c: In function ‘DrawGraphToPanel’:
gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable]
  453 |   Int4Ptr        xpoints, xp;
      |                           ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gxydraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gxydraw.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gxydraw.c: In function ‘DotXYPlot’:
gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |   gsp->xaxiscount = xaxiscount;
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
gxydraw.c:182:19: note: ‘xaxiscount’ was declared here
  182 |   Int4            xaxiscount, yaxiscount;
      |                   ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gtrdraw.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpanel.c: In function ‘FillFeatureInfo’:
seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘DrawFeatureCodonLines’:
seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 1897 |   Char              tmp[2];
      |                     ^~~
seqpanel.c: In function ‘DrawFeature’:
seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable]
 2127 |   Int4              prot_len;
      |                     ^~~~~~~~
seqpanel.c: In function ‘GetSeqChapterFeatureInfo’:
seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’:
seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable]
 3406 |   Int4          totallines;
      |                 ^~~~~~~~~~
seqpanel.c: In function ‘PrintFeature’:
seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                            ^~~~~~
seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                     ^~~~~
seqpanel.c: In function ‘PrintTranslatedFrame’:
seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 3966 |   Char          tmp[2];
      |                 ^~~
seqpanel.c: In function ‘ExportSequenceText’:
seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign]
 4372 |               complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
      |                                            ^
      |                                            |
      |                                            Nlm_Uint1Ptr {aka unsigned char *}
In file included from ../include/alignmgr2.h:112,
                 from seqpanel.c:39:
../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’}
   78 | NLM_EXTERN CharPtr complement_string (CharPtr str);
seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable]
 4236 |   ValNodePtr    curr_para_strings = NULL;
      |                 ^~~~~~~~~~~~~~~~~
seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
 4229 |   Uint1Ptr      buf;
      |                 ^~~
seqpanel.c: In function ‘SeqEdOnClick’:
seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable]
 4946 |   Int4              direction;
      |                     ^~~~~~~~~
seqpanel.c: In function ‘SeqAlnOnDrag’:
seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                                  ^~~~~~~
seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                 ^~~~~~~~~~~~~~~
seqpanel.c: In function ‘ResizeSeqEdView’:
seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable]
 5760 |   Int4 sequence_pos = 0;
      |        ^~~~~~~~~~~~
seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 5755 |   Int4 height, width;
      |        ^~~~~~
seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’:
seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                      ^~
      |                      |
      |                      FILE * {aka struct _IO_FILE *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ {aka ‘struct _IO_FILE *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                          ^~~~~~~~~~~~
      |                          |
      |                          Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:64: note: expected ‘FILE * restrict’ {aka ‘struct _IO_FILE * restrict’} but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘WriteAlignmentContiguousToFile’:
seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                    ^~
      |                    |
      |                    FILE * {aka struct _IO_FILE *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ {aka ‘struct _IO_FILE *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                        ^~~~~~~~~~~~
      |                        |
      |                        Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:64: note: expected ‘FILE * restrict’ {aka ‘struct _IO_FILE * restrict’} but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’:
seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9008 |   SeqEntryPtr   sep;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function]
 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘SeqEdFindPatternDialog’:
../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
seqpanel.c:7632:25: note: ‘g1’ was declared here
 7632 |   GrouP              h, g1, g2;
      |                         ^~
In file included from ../include/ncbi.h:62,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘PrintFeature’:
../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
seqpanel.c:3810:21: note: ‘str_prot’ was declared here
 3810 |   CharPtr           str_prot;
      |                     ^~~~~~~~
seqpanel.c: In function ‘SeqEdExportProc’:
seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4329 |             SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:4233:17: note: ‘seq_pos’ was declared here
 4233 |   Int4          seq_pos;
      |                 ^~~~~~~
seqpanel.c: In function ‘onDrawSeqPanel’:
seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1301 |     MemCpy(buf, alnbuf + from, len);
      |                 ~~~~~~~^~~~~~
seqpanel.c:2466:33: note: ‘alnbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                                 ^~~~~~
seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1252 |   AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1253 |                              bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1254 |                              bvp->showAlnSubstitutions);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:2466:25: note: ‘seqbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                         ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingengraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’:
ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’:
ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  355 |   else
      |   ^~~~
ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  357 |     prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0);
      |     ^~~~
ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable]
  347 |   BioseqPtr bsp=NULL;
      |             ^~~
ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’:
ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable]
  372 |   Char           buf[41]={""};
      |                  ^~~
ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable]
  367 |   Boolean        NewLine=FALSE;
      |                  ^~~~~~~
ingengraph.c: In function ‘Ing_DrawOverviewPage’:
ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
  492 |   Int4       offset;
      |              ^~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/ingengraph.h:54,
                 from ingengraph.c:45:
../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable]
  468 | #define Visible Nlm_Visible
      |                 ^~~~~~~~~~~
ingengraph.c:488:14: note: in expansion of macro ‘Visible’
  488 |   Boolean    Visible=FALSE;
      |              ^~~~~~~
ingengraph.c: In function ‘Ing_PopOverviewPage’:
ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable]
  715 |   Int4         margin, len;
      |                ^~~~~~
ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable]
  714 |   Char         buf[50]={""};
      |                ^~~
ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable]
  708 |   SeqAnnotPtr  sanp=NULL;
      |                ^~~~
ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’:
ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1097 |       if ((start - offset - (label_len - feat_len)/2)<0)
      |       ^~
ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1099 |         if (bOver_the_edge)
      |         ^~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable]
 1437 |   SegmenT      CurrentSeg=NULL;
      |                ^~~~~~~~~~
ingengraph.c: In function ‘Ing_ExploreSegments’:
ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable]
 1829 |   Boolean            isDraft = FALSE;
      |                      ^~~~~~~
ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable]
 1827 |   ValNodePtr         vnp = NULL;
      |                      ^~~
ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable]
 1826 |   GBBlockPtr         gbp = NULL;
      |                      ^~~
ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable]
 1824 |   Uint1              orange[3], black[3];
      |                                 ^~~~~
ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                                 ^~~~
ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                      ^~~~~~
ingengraph.c: In function ‘Ing_AddGCRect’:
ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable]
 1933 |    FloatHi      comp2, comp_prev;
      |                 ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/ingengraph.h:63,
                 from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function]
   71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
      |             ^~~~~~~~~~~~~~~~~~~~~
ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function]
  602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
      |                            ^~~~~~~~~~~~~~~~~~~~
ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function]
  583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
      |                        ^~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1092:27: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1092 |         sprintf(label,"gi|%s", buf);
      |                           ^~   ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenext.c: In function ‘Ing_KeepTheBestAlignments’:
ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
  167 |   AMAlignIndex2Ptr amaip = NULL;
      |                    ^~~~~
ingenext.c: In function ‘Ing_HandleQBlastResults’:
ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  272 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_HandleResults’:
ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  535 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable]
  739 |   ValNodePtr     paramlist = NULL;
      |                  ^~~~~~~~~
ingenext.c: In function ‘Ing_tRNAscanProc’:
ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable]
  915 |   ValNodePtr         moveMe = NULL;
      |                      ^~~~~~
ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable]
  906 |   TexT               first = NULL;
      |                      ^~~~~
ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  902 |   ButtoN             b;
      |                      ^
ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable]
  896 |   CharPtr       args = NULL;
      |                 ^~~~
ingenext.c: In function ‘Ing_ReadtRNAConfigFile’:
ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable]
 1125 |   Boolean     demomode = FALSE;
      |               ^~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 1312 |   Boolean             is_local, first_bsp=TRUE;
      |                       ^~~~~~~~
ingenext.c: In function ‘Ing_CreateDotMatrixForm’:
ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1834 |       while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |              ^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable]
 1994 |   SeqAnnotPtr      sanp = NULL;
      |                    ^~~~
ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable]
 1993 |   SPI_mRNAPtr      spidp_next = NULL;
      |                    ^~~~~~~~~~
ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable]
 1992 |   SPI_mRNAPtr      spidp_head = NULL;
      |                    ^~~~~~~~~~
ingenext.c: In function ‘Ing_ReadmRNAs_ext’:
ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2025 |    while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |           ^~~~~~~
ingenext.c: In function ‘Ing_DeleteInsertInGenomic’:
ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable]
 2522 |   Int2         newsegs = 0, offset = 0;
      |                ^~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2777 |           if (!All)
      |           ^~
ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2781 |             SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand);
      |             ^~~~~~~~~~~~~
ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable]
 2615 |   Char              str[200] = {""};
      |                     ^~~
ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable]
 2612 |   AMAlignIndex2Ptr   amaip = NULL;
      |                      ^~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable]
 3025 |   SeqIdPtr    sip = NULL;
      |               ^~~
ingenext.c: In function ‘Ing_PrintSpideyReport’:
ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable]
 3471 |   Int4              mmis, gmis, miscount = 0;
      |                           ^~~~
ingenext.c: In function ‘Ing_PrintBlastReport’:
ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable]
 3853 |   Boolean        more = FALSE;
      |                  ^~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable]
  652 | #define DkGray Nlm_DkGray
      |                ^~~~~~~~~~
ingenext.c:3850:18: note: in expansion of macro ‘DkGray’
 3850 |   Uint1          DkGray[3];
      |                  ^~~~~~
ingenext.c: In function ‘Ing_PopulateReport’:
ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable]
 4328 |   SeqIdPtr         sip=NULL;
      |                    ^~~
ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable]
 4324 |   CharPtr          temp = NULL;
      |                    ^~~~
ingenext.c: In function ‘Ing_ResizeReportWindow’:
ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
 4484 |   BaR      hsb;
      |            ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable]
  130 | static Int4 querytimercount = 0;
      |             ^~~~~~~~~~~~~~~
ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable]
  129 | static Int4 querytimerlimit = 100;
      |             ^~~~~~~~~~~~~~~
ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function]
   59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
      |                            ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1457 |      e_tmp->next=e_head;
      |      ~~~~~~~~~~~^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:2003:45: warning: ‘%s’ directive writing up to 30 bytes into a region of size 14 [-Wformat-overflow=]
 2003 |     sprintf(buf, "Spidey returned NULL for  %s", str);
      |                                             ^~   ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 57 bytes into a destination of size 40
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_PrintBlastReport.isra.0’:
ingenext.c:3893:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3893 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:3911:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3911 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3170 |         gstart = start + (stop - gstart);
      |                          ~~~~~~^~~~~~~~~
ingenext.c:3206:45: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3206 |       else if (mstart == R1 || mstart == R2 || mstart == R3){
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  780 |            sprintf (cpy, "%s=%s", upp->param, last);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  794 |          sprintf (cpy, "%s=%s", upp->param, last);
      |                              ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2617:33: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2617 |   Int4              gmis, mmis, nmismatches, nkeep = 0;
      |                                 ^~~~~~~~~~~
ingenext.c: In function ‘Ing_PrintSpideyReport.isra.0’:
ingenext.c:3534:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3534 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:3552:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3552 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ingenwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenwin.c: In function ‘Ing_PopulateDetailedPage’:
ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable]
  134 |   Boolean            bSelected = FALSE;
      |                      ^~~~~~~~~
ingenwin.c: In function ‘Ing_DoRange’:
ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
  394 |   BioseqPtr          bsp;
      |                      ^~~
ingenwin.c: In function ‘Ing_PopulateCpG’:
ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  576 |   Int2    cxChar, nchars;
      |                   ^~~~~~
ingenwin.c: In function ‘Ing_ResizeCpGWindow’:
ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  642 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_PopulateMotif’:
ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  718 |   Int2           cxChar, nchars;
      |                          ^~~~~~
ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                        ^~~~~~
ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                  ^~~~
ingenwin.c: In function ‘Ing_ResizeMotifWindow’:
ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable]
  785 |   CharPtr  name = NULL;
      |            ^~~~
ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  783 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_ShowComplexity’:
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1270 |   while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
      |          ^
ingenwin.c: In function ‘Ing_CreateNewFeature’:
ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable]
 1301 |   Uint1              rnatype=0;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_GetAlignmentIntervals’:
ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable]
 1418 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’:
ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable]
 1494 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’:
ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |                          ^~~~
ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |             ^~~~
ingenwin.c: In function ‘Ing_OM_MsgFunc’:
ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress]
 2380 |           if (&sfc)
      |               ^
ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable]
 2284 |   Uint2              segID=0;
      |                      ^~~~~
ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable]
 2280 |   SeqEntryPtr        sep=NULL;
      |                      ^~~
ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                               ^~~~~~
ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                      ^~~~~
ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                                  ^
ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                            ^~
ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                      ^~
ingenwin.c: In function ‘Ing_MoveCursor’:
ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable]
 2631 |   Uint1 grayClr2[3];
      |         ^~~~~~~~
ingenwin.c: In function ‘Ing_FeatViewerClickProc’:
ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2814 |   if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
      |       ^~~~~~
ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable]
 2804 |   SeqLocPtr  slp=NULL;
      |              ^~~
ingenwin.c: In function ‘Ing_SequenceClickProc’:
ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
 2908 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c: In function ‘Ing_ReadInBlastAsn’:
ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable]
 3077 |   IngReportPtr    Report=NULL;
      |                   ^~~~~~
ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable]
 3075 |   SeqIdPtr        sip=NULL;
      |                   ^~~
ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable]
 3074 |   SeqAlignPtr     salp=NULL;
      |                   ^~~~
ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable]
 3073 |   SeqAlignPtr     n_sap=NULL;
      |                   ^~~~~
ingenwin.c: In function ‘Ing_ParseSeqIdFile’:
ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable]
 3142 |    BioseqPtr       bsp=NULL;
      |                    ^~~
ingenwin.c: In function ‘Ing_ReadInFeatureTable’:
ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable]
 3194 |    SeqAnnotPtr     sanp;
      |                    ^~~~
ingenwin.c: In function ‘Ing_AssembleGenscanInfo’:
ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable]
 3258 |    SeqLocPtr    slp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInGenscan’:
ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                                 ^~~
ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                    ^~~~~~
ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable]
 3298 |    Boolean         found=FALSE, first_pass=FALSE;
      |                                 ^~~~~~~~~~
ingenwin.c: In function ‘Ing_AssembleTabDelimited’:
ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable]
 3519 |    Int4         score;
      |                 ^~~~~
ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable]
 3516 |    CharPtr      tmp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInTabDelimited’:
ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                                        ^~~~~~~~~
ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                    ^~~
ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable]
 3653 |    IngInfoPtr      lip_tmp=NULL;
      |                    ^~~~~~~
ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3650 |    CharPtr         letter=NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable]
 3984 |   IngReportPtr Report=NULL;
      |                ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenMain’:
ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable]
 4078 |   SeqEntryPtr       sep_orig=NULL, sep=NULL;
      |                     ^~~~~~~~
ingenwin.c: In function ‘Ing_ResizeMainWindow’:
ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable]
 4187 |   Int2     RulerHeight, InfoHeight;
      |                         ^~~~~~~~~~
ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’:
ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4491 |   ButtoN              b,b2;
      |                         ^~
ingenwin.c: In function ‘Ing_EditFeature’:
ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable]
 4640 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_MarkSeqAnnot’:
ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable]
 4713 |  Boolean       bNoParent = FALSE;
      |                ^~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateClickProc’:
ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable]
 5064 |   Uint2              primID=0;
      |                      ^~~~~~
ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable]
 5063 |   Uint2              itemtype=0;
      |                      ^~~~~~~~
ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable]
 5062 |   Uint4              itemID=0;
      |                      ^~~~~~
ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable]
 5061 |   Uint2              entityID=0;
      |                      ^~~~~~~~
ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable]
 5060 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable]
 5059 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_PrintCompProteins’:
ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable]
 5146 |   Char       str1[200] = {""}, str2[10] = {""};
      |                                ^~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable]
 5282 |   Uint1      ARROW=NO_ARROW;
      |              ^~~~~
ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable]
 5279 |   Int4       stringwidth = 0;
      |              ^~~~~~~~~~~
ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable]
 5277 |   Int4       left = 10;
      |              ^~~~
ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable]
 5276 |   PrimitivE  prim;
      |              ^~~~
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable]
 5596 |   Char       strErr[50]={""};
      |              ^~~~~~
ingenwin.c: In function ‘Ing_GetFromNetwork’:
ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7518 |   Char    szAppName  [10]={"Ingenue"};
      |           ^~~~~~~~~
ingenwin.c: In function ‘Ing_SetupMainWindow’:
ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7761 | Char           szAppName [10]={"Ingenue"};
      |                ^~~~~~~~~
ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                                ^~~~
ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                 ^~~~
ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function]
 7552 | static void Ing_ItemtoNetwork(IteM i){
      |             ^~~~~~~~~~~~~~~~~
ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function]
 6717 | static void Ing_BspListProc(IteM i)
      |             ^~~~~~~~~~~~~~~
ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function]
 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function]
 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function]
 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function]
 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’:
ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4902 |   Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function ‘Ing_SearchOK’:
ingenwin.c:7355:22: warning: ‘%s’ directive writing up to 254 bytes into a region of size 50 [-Wformat-overflow=]
 7355 |     sprintf(strErr, "%s was not found in record", str);
      |                      ^~                           ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 279 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_AnnotateAlignmentForm’:
ingenwin.c:6113:30: warning: ‘%s’ directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=]
 6113 |     sprintf(buf_mrna, "from: %s", str_mrna);
      |                              ^~   ~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 106 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:6117:27: warning: ‘%s’ directive writing up to 99 bytes into a region of size 96 [-Wformat-overflow=]
 6117 |     sprintf(buf_gen, "to: %s", str_gen);
      |                           ^~   ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 104 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=]
 5353 |   sprintf(str, "%s", pfp->name);
      |                 ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5229 |     for (i = last_pos; i <= exit; i += nchars_row){
      |                                   ~~^~~~~~~~~~~~~
ingenwin.c:5137:17: note: ‘j’ was declared here
 5137 |   Int4       i, j, k, row;
      |                 ^
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=]
 5625 |     sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3290 |    slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:3255:17: note: ‘strand’ was declared here
 3255 |    Uint1        strand;
      |                 ^~~~~~
ingenwin.c: In function ‘Ing_FindMotif’:
ingenwin.c:1145:17: warning: ‘%s’ directive writing up to 99 bytes into a region of size 50 [-Wformat-overflow=]
 1145 |   sprintf(str, "%s", motif);
      |                 ^~   ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 100 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_KozakProc’:
ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1006:22: note: ‘ReportW’ was declared here
 1006 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_SignalPeptideProc’:
ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1099 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1057:22: note: ‘ReportW’ was declared here
 1057 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_RepeatsProc’:
ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  997 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:955:22: note: ‘ReportW’ was declared here
  955 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_PolyAProc’:
ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  946 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:904:22: note: ‘ReportW’ was declared here
  904 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_CpGProc’:
ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  895 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:857:22: note: ‘ReportW’ was declared here
  857 |   WindoW             ReportW;
      |                      ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF macrodlg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from macrodlg.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macrodlg.c: In function ‘ExistingTextDialog’:
macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 1959 |   PrompT             ppt;
      |                      ^~~
macrodlg.c: In function ‘EndDistanceToDialog’:
macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3076 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3082 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3088 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c: In function ‘SourceQualChoiceDialog’:
macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                                ^~
macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                     ^~
macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                 ^~
macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                             ^~
macrodlg.c: In function ‘SourceConstraintDialog’:
macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’:
macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘QuantityConstraintToDialog’:
macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7368 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7373 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7378 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c: In function ‘TestApplyActionDialog’:
macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
12965 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestEditActionDialog’:
macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13170 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestRemoveOutsideActionDialog’:
macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13328 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘ApplyFeatureActionToDialog’:
macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15186 |         sprintf (num, "%d^", action->location->data.intvalue);
      |                        ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                          |
      |                         int                        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15188 |         sprintf (num, "%d", action->location->data.intvalue + 1);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                                   |
      |                         int                                 Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c: In function ‘AddMacroActions’:
macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
20523 |   Boolean               rval = FALSE;
      |                         ^~~~
macrodlg.c: In function ‘PointerToSampleDialog’:
macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable]
20659 |   Int4            max_char_per_line;
      |                   ^~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘SampleDialogCopy’:
macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
macrodlg.c: In function ‘SingleMacroAcceptButton’:
macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                                 ^~~~~~~~~~~~
macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                     ^~~~~~~~~~
macrodlg.c: In function ‘LaunchMacroTemplateEditor’:
macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable]
23785 |   BaseFormPtr         bfp;
      |                       ^~~
macrodlg.c: In function ‘SearchFuncToDialog’:
macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
25755 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long int}
      |                      %ld
macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
25776 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long int}
      |                      %ld
At top level:
macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function]
20095 | static void ChangeMacroActionPopup (LisT t)
      |             ^~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function]
20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function]
19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function]
19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘ActionToSingleMacroActionForm’:
macrodlg.c:22216:25: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22216 |   Int2                  val, i;
      |                         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF biosrc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/biosrc.h:48,
                 from biosrc.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
biosrc.c: In function ‘CreateSimpleBioSourceDialog’:
biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable]
 2455 |   Boolean        indexerVersion;
      |                  ^~~~~~~~~~~~~~
biosrc.c: In function ‘CreateBioSourceDialog’:
biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3615 |   PrompT         y;
      |                  ^
At top level:
biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function]
 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function]
 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function]
 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function]
 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function]
 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cdrgn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/cdrgn.h:89,
                 from cdrgn.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdrgn.c: In function ‘SetBestProteinFeature’:
cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable]
 1003 |     ProtRefPtr      prp;
      |                     ^~~
cdrgn.c: In function ‘CdRegionPtrToForm’:
cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable]
 1050 |   ValNodePtr      vnp;
      |                   ^~~
cdrgn.c: In function ‘ProductToSeqLocPtr’:
cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable]
 1293 |   RnaFormPtr      rfp = NULL;
      |                   ^~~
cdrgn.c: In function ‘CreateCodeBreakAlist’:
cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1926 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’:
cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable]
 1977 |   Uint1           aa;
      |                   ^~
cdrgn.c: In function ‘PopulateAAPopup’:
cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 7041 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘RnaRefPtrToForm’:
cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable]
 7557 |   Boolean       is_iMet = FALSE;
      |                 ^~~~~~~
cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable]
 7556 |   Boolean       is_fMet = FALSE;
      |                 ^~~~~~~
At top level:
cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function]
 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function]
 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
      |             ^~~~~~~~~~~~~~~~
cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function]
 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
      |                  ^~~~~~~~~~~~~
cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function]
 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function]
 6246 | static Uint1 check_rna_type (Uint1 type)
      |              ^~~~~~~~~~~~~~
cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function]
 3183 | static void SetComment (CharPtr new_comment, WindoW w)
      |             ^~~~~~~~~~
cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
 2149 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function]
  961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp)
      |             ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF import.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’
 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea.";
      |                      ^~~~~~~~~~~~~~~
import.c: In function ‘ExpandSecondaries’:
import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                              ^~~~
import.c:3394:29: note: directive argument in the range [-2147483648, 2147483647]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                             ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pubdesc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pubdesc.c: In function ‘MakeReplaceAuthorsForm’:
pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable]
 4303 |   PubdescEditProcsPtr  pepp;
      |                        ^~~~
pubdesc.c: In function ‘DisplayDocSum’:
pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable]
 4865 |   Int2  lineheight;
      |         ^~~~~~~~~~
At top level:
pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function]
 5377 | static void Quit (ButtoN b)
      |             ^~~~
pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function]
 5113 | static  void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
      |              ^~~~~~
pubdesc.c: In function ‘QueryFromForm’:
pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5096 |       sprintf (year_buf, "%d", year - 1);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5099 |       sprintf (year_buf, "%d", year);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5102 |       sprintf (year_buf, "%d", year + 1);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/seqsub.h:58,
                 from seqsub.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsub.c: In function ‘SeqSubmitFromTemplateEditor’:
seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 3250 |   ObjMgrDataPtr    omdp;
      |                    ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mapgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapgene.c: In function ‘load_new_align’:
mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable]
   79 |  SeqLocPtr slp, match_slp, t_slp;
      |                 ^~~~~~~~~
mapgene.c: In function ‘figure_loc_by_position’:
mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1039 |  Int4 start, stop, center;
      |                    ^~~~~~
mapgene.c: In function ‘cvt_loc_for_single_gene’:
mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable]
 1958 |  Int4 offset, align_offset, p_align_offset;
      |                             ^~~~~~~~~~~~~~
mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable]
 1957 |  Int4 shift = 0;
      |       ^~~~~
mapgene.c: In function ‘print_header_for_center’:
mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 2693 |  CharPtr link;
      |          ^~~~
mapgene.c: In function ‘PrintGeneticMarkerForOneMap’:
mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 3635 |  CharPtr link;
      |          ^~~~
At top level:
mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function]
 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function]
 1788 | static void adjust_slp_list(ValNodePtr slp_list)
      |             ^~~~~~~~~~~~~~~
mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function]
 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
      |                ^~~~~~~~~~~~~~
mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function]
 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
      |             ^~~~~~~~~~~~~~~~~~~~~~
mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function]
  200 | static Int4 get_center_pointer(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~~~~~~
mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function]
   27 | static void print_this_id (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~
mapgene.c: In function ‘PrintHTMLContigAlign.isra.0’:
mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=]
 2798 |    sprintf(link_name, "CONTIG%s", alpha_name);
      |                              ^~   ~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c: In function ‘PrintContigForOneMap’:
mapgene.c:3152:7: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3152 |  Int4 yac_num;
      |       ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prtgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtgene.c: In function ‘print_sfp_ext’:
prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  108 |      if(ufp->choice == 2) /*integer */
      |      ^~
prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  110 |       print_store_buf(temp, buf, buf_size, &len, fp);
      |       ^~~~~~~~~~~~~~~
prtgene.c: In function ‘print_store_for_html’:
prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable]
  749 |  Char white_sp;
      |       ^~~~~~~~
prtgene.c: In function ‘PrintSequenceToFile.isra.0’:
prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=]
  950 |    sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2);
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvclick.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvclick.c:248:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’:
ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
  979 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg’:
ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1090 |   Boolean        bDeselectAll=TRUE;
      |                  ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_DragProc’:
ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2013 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
ddvclick.c: In function ‘DDV_HoldProc’:
ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable]
 2494 | Boolean     Scroll=FALSE;
      |             ^~~~~~
ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2490 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function]
 1823 | static void EraseOutline(PaneL p) {
      |             ^~~~~~~~~~~~
ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function]
 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
      |                ^~~~~~~~~~~~~~~~~
ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function]
  970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function]
  611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’:
ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  956 |   if (!sip)
      |      ^
ddvclick.c: In function ‘DDV_ReleaseProc’:
ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1127 |   slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1091:18: note: ‘pgp’ was declared here
 1091 |   ParaGPtr       pgp;
      |                  ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvgraph.c:210:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvgraph.c: In function ‘DDV_DrawSequence’:
ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable]
  701 | Int2            decal=1,i,x,y,pos=0;
      |                               ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvopen.c:372:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’:
ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1739 | Uint2  nRet=DVV_MSG_M_OK;
      |        ^~~~
ddvopen.c: In function ‘DDV_FOpenAcceptProc’:
ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1932 | Uint2     nRet=DVV_MSG_M_OK,The_entityID;
      |           ^~~~
ddvopen.c: In function ‘DDV_NetOpen_okProc’:
ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable]
 2141 | Int2   AccessType,procval;
      |        ^~~~~~~~~~
ddvopen.c: In function ‘DDV_StartMainWin_Slave’:
ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2411 |     else
      |     ^~~~
ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2417 |  if (!w) return(NULL);
      |  ^~
ddvopen.c: In function ‘DDV_ImportBioseqDlg’:
ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 2819 |     ButtoN b;
      |            ^
ddvopen.c: In function ‘DDV_HideDlg’:
ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3135 |     ButtoN b;
      |            ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function]
 2111 | static Boolean DDV_IsInt(CharPtr szAccess)
      |                ^~~~~~~~~
ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function]
 1285 | static void DDV_NoConvert(ButtoN g) {
      |             ^~~~~~~~~~~~~
ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function]
 1272 | static void DDV_Convert(ButtoN g) {
      |             ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvpanel.c:389:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvpanel.c: In function ‘DDV_CreateViewerPanel’:
ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 1177 | Int2   cxChar,cyChar;
      |        ^~~~~~
ddvpanel.c: In function ‘DDV_DispStyles_OkProc’:
ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable]
 1543 | Char                szBuf[15]={""};
      |                     ^~~~~
ddvpanel.c: In function ‘DDV_ExportTexte’:
ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable]
 2799 | ButtoN        chk2,chk3,chk4,chk5,chk6,browse,ok;
      |                                        ^~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function]
 3377 | static void write_annot(SeqAlignPtr align)
      |             ^~~~~~~~~~~
ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function]
 3296 | static void DDV_MoveRightBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function]
 3290 | static void DDV_MoveRightBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function]
 3284 | static void DDV_MoveLeftBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function]
 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function]
 3272 | static void DDV_MoveRowRight(IteM i)
      |             ^~~~~~~~~~~~~~~~
ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function]
 3266 | static void DDV_MoveRowLeft(IteM i)
      |             ^~~~~~~~~~~~~~~
ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function]
 3024 | static void DDV_DeleteRow(IteM i)
      |             ^~~~~~~~~~~~~
ddvpanel.c: In function ‘DDV_SortPGPLineNum’:
ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2441 |   n+=pgp->nLines;
      |      ~~~^~~~~~~~
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF corematx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corematx.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dvncode.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from dvncode.c:69:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb1.c: In function ‘BiostrucAsnRead’:
objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   90 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucIdFree’:
objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  323 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable]
  358 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucSetAsnRead’:
objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’:
objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  716 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’:
objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  885 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucDescrFree’:
objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1015 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1059 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucHistoryAsnRead’:
objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1270 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucReplaceAsnRead’:
objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1450 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’:
objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1618 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1652 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’:
objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1753 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphAsnRead’:
objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2001 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiomolDescrFree’:
objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2139 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2189 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphAsnRead’:
objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2446 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘MoleculeGraphAsnRead’:
objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2654 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘InterResidueBondAsnRead’:
objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2856 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2855 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueAsnRead’:
objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3037 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3036 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrFree’:
objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3177 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3212 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’:
objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3399 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3398 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’:
objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3565 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3564 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomAsnRead’:
objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3732 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘IntraResidueBondAsnRead’:
objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3924 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3923 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ChiralCenterAsnRead’:
objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4097 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrAsnRead’:
objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4286 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4285 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrSetAsnRead’:
objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4441 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  411 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1126 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1802 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c:1752:10: note: ‘choice’ was declared here
 1752 |    Uint1 choice;
      |          ^~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3265 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb2.c: In function ‘BiostrucModelAsnRead’:
objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelDescrFree’:
objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  242 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable]
  289 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ModelSpaceAsnRead’:
objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  512 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable]
  511 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Coordinates_coordinatesFree’:
objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  709 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  743 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’:
objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable]
  831 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ReferenceFrameAsnRead’:
objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1063 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1062 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘CoordinatesFree’:
objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1193 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’:
objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1420 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Surface_surfaceFree’:
objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1640 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1686 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Surface_surfaceAsnRead’:
objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1766 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘DensityCoordinatesAsnRead’:
objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2030 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelSpacePointsAsnRead’:
objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’:
objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2404 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2439 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’:
objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2615 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’:
objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2760 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ConformationEnsembleAsnRead’:
objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2890 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3054 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3221 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TMeshAsnRead’:
objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3426 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TrianglesAsnRead’:
objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  366 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1281 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2485 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  877 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:830:10: note: ‘choice’ was declared here
  830 |    Uint1 choice;
      |          ^~~~~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1828 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:1765:10: note: ‘choice’ was declared here
 1765 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’:
objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphPntrsFree’:
objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  220 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AtomPntrsAsnRead’:
objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  443 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’:
objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  626 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’:
objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  824 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘SphereAsnRead’:
objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1024 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ConeAsnRead’:
objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1192 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CylinderAsnRead’:
objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1372 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BrickAsnRead’:
objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1557 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransformAsnRead’:
objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1796 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’:
objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1921 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘Location_locationFree’:
objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2161 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2206 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘Property_propertyFree’:
objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2722 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘ColorPropAsnRead’:
objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2798 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CameraAsnRead’:
objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2986 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptAsnRead’:
objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3171 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3330 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionSimilarityAsnRead’:
objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3648 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘OtherFeatureAsnRead’:
objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3825 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’:
objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3999 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoleculePntrsAsnRead’:
objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4342 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’:
objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4505 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’:
objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4673 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionCoordinatesAsnRead’:
objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4845 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionBoundaryFree’:
objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4981 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AlignStatsAsnRead’:
objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5212 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RealValueAsnRead’:
objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5454 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ModelSpacePointAsnRead’:
objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5615 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoveFree’:
objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5759 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘RotMatrixAsnRead’:
objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5967 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransMatrixAsnRead’:
objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6200 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘GLMatrixAsnRead’:
objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6379 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’:
objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6680 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’:
objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  307 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’:
objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2024 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘ResiduePntrsAsnRead’:
objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4213 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionBoundaryAsnRead’:
objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘MoveAsnRead’:
objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5839 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3464 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:3409:10: note: ‘choice’ was declared here
 3409 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2691 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2626:10: note: ‘choice’ was declared here
 2626 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2308:10: note: ‘choice’ was declared here
 2308 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcn3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcn3d.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’:
objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’:
objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  251 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dColorAsnRead’:
objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  415 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable]
  414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’:
objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  605 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable]
  604 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’:
objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  789 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable]
  788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’:
objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  972 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable]
  971 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’:
objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1175 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1174 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’:
objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1578 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’:
objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1707 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1706 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’:
objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1872 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1871 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’:
objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2035 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’:
objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2198 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’:
objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2363 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’:
objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2555 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2554 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dVectorAsnRead’:
objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2843 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’:
objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3016 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3015 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi.c:116:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi.c: In function ‘MakeAModelstruc’:
mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable]
  192 |     Int4  iCount = 0;
      |           ^~~~~~
mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable]
  189 |     PDNMS pdnmsCount = NULL;
      |           ^~~~~~~~~~
mmdbapi.c: In function ‘AddPFBSelect’:
mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable]
  532 |     PMSD  pmsdStruc = NULL;
      |           ^~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’:
mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable]
 1037 |    CoordinatesPtr   pcoThis = NULL;
      |                     ^~~~~~~
mmdbapi1.c: In function ‘FetchBS’:
mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable]
 1242 |     Boolean bIsNetwork = FALSE;
      |             ^~~~~~~~~~
mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’:
mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable]
 1627 |     ValNodePtr pvnX = NULL;
      |                ^~~~
mmdbapi1.c: In function ‘MakeChemGraphNodeList’:
mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable]
 2343 |     ValNodePtr pvnThis = NULL;
      |                ^~~~~~~
mmdbapi1.c: In function ‘DoApplyTransform’:
mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2573 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘DoReverseTransform’:
mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2713 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 2860 |   PSFS psfsThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable]
 2859 |   BiostrucFeaturePtr pbsfThis = NULL;
      |                      ^~~~~~~~
mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2855 |   PMSD  pmsdThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 2978 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 2967 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3174 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3408 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 3397 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘InstallAlignedSlave’:
mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3877 |    Int2 iTest;
      |         ^~~~~
mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 3874 |    PSFS psfsThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAddFeature’:
mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable]
 4184 |   Boolean ncbiVast = FALSE;
      |           ^~~~~~~~
mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable]
 4182 |   Boolean pdbFootnote  = FALSE;
      |           ^~~~~~~~~~~
mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable]
 4181 |   Boolean pdbSite = FALSE;
      |           ^~~~~~~
mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable]
 4172 |   DValNodePtr pdvnThis = NULL;
      |               ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAsnGet’:
mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable]
 5289 |     AsnOptionPtr aop;
      |                  ^~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3083 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3127 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3275 |     sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3515 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3559 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2885 |   pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi2.c:159:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi2.c: In function ‘GetAtomLocs’:
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1471 |      if (pmadThis)
      |         ^
mmdbapi2.c: In function ‘AssignAtomLocId’:
mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1537 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignBackBone’:
mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1686 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignVirtual’:
mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1790 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignIons’:
mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1846 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘MolFromPDBChain’:
mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1931 |     Int2 iTest;
      |          ^~~~~
mmdbapi2.c: In function ‘SeqStringFromMol’:
mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable]
 1948 |    Int4 iTest =0;
      |         ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi3.c:207:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi3.c: In function ‘WritePDBHeader’:
mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  840 |     if(org)
      |     ^~
mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  845 |         src = orgstring;
      |         ^~~
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  840 |     if(org)
      |       ^
mmdbapi3.c: In function ‘WritePDBRemarks’:
mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable]
 1389 |    int len;
      |        ^~~
mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable]
 1388 |    Char pcThis[81];
      |         ^~~~~~
mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable]
 1387 |    BiostrucDescrPtr pbsdrLast = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable]
 1386 |    BiostrucDescrPtr pbsdrThis = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c: In function ‘WritePDBConnect’:
mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1610 |    Int2 iTest;
      |         ^~~~~
mmdbapi3.c: In function ‘WritePDBModelList’:
mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable]
 1625 |     Int4 iCount;
      |          ^~~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable]
 2287 |   CharPtr pcElName = NULL;
      |           ^~~~~~~~
mmdbapi3.c: In function ‘WriteFASTAMolecule’:
mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3537 |    Int4 iTest =0;
      |         ^~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2314 |         if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
      |            ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi4.c: In function ‘RefreshSurface’:
mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable]
  147 |     Int4 iVal = 0;
      |          ^~~~
mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’:
mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable]
  335 |     DensityCoordinatesPtr  pdcThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c: In function ‘FreeRedundantAsn’:
mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable]
  370 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
  367 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘RefreshModelAsnMem’:
mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable]
  474 |     Int4    iCoordSets = 0;
      |             ^~~~~~~~~~
mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable]
  465 |     AtomPntrsPtr   pappThis = NULL;
      |                    ^~~~~~~~
mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable]
  464 |     ModelSpacePointsPtr   pmspThis = NULL;
      |                           ^~~~~~~~
mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable]
  463 |     AtomicOccupanciesPtr   pocThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable]
  458 |     AlternateConformationIdsPtr  paciThis = NULL;
      |                                  ^~~~~~~~
mmdbapi4.c: In function ‘RebuildChemGraphAsn’:
mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable]
  931 |     Boolean   bOK = TRUE;
      |               ^~~
mmdbapi4.c: In function ‘WriteASNChemGraphOnly’:
mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable]
 1192 |     Int4 iHash = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘FreeSingleModel’:
mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable]
 1336 |     PDNML pdnml = NULL;
      |           ^~~~~
mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable]
 1332 |     BiostrucModelPtr pbsmTemp = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable]
 1505 |     AsnIoPtr paioAIP = NULL;
      |              ^~~~~~~
mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1502 |     PMLD  pmldThis = NULL;
      |           ^~~~~~~~
mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1498 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
 1496 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable]
 1495 |     BiostrucPtr pBSThis = NULL;
      |                 ^~~~~~~
mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable]
 1494 |     Boolean bFirst = TRUE;
      |             ^~~~~~
mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable]
 1493 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 1741 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1632 |      return bRet;
      |             ^~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 1828 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1872 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbentr.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function ‘LoadSubsetTable’:
vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  212 |  fscanf(fd, "%d", &ndoms);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  239 |  fscanf(fd, "%d", &nsubs);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  258 |   fscanf(fd, "%d", &j);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  287 |   fscanf(fd, "%8c", domid);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  296 |   fscanf(fd, "%d", &n);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  302 |    fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  304 |   fscanf(fd, "\n");
      |   ^~~~~~~~~~~~~~~~
vastsubs.c:202:16: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  202 |  Int4 i, j, n, len, strindex, ndoms, nsubs;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF prunebsc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prunebsc.c: In function ‘PruneFeatureSet’:
prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable]
  220 |   BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
      |                      ^~~~~~~
prunebsc.c: In function ‘PruneModel’:
prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable]
  272 |   ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
      |                              ^~~~~~
prunebsc.c: In function ‘PruneBiostruc’:
prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  559 |     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  574 |     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  663 |     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
      |         ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  339 | #define StringICmp Nlm_StringICmp
      |                    ^~~~~~~~~~~~~~
prunebsc.c:522:25: note: ‘feature_name’ was declared here
  522 |   CharPtr chnid, hetid, feature_name;
      |                         ^~~~~~~~~~~~
prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |         pirbnew->next = pirb;
      |         ~~~~~~~~~~~~~~^~~~~~
prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  695 |       bsmpHead = PruneModel(bsmp, pvnIds, mol_id);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |         currenthet->next = het;
      |         ~~~~~~~~~~~~~~~~~^~~~~
prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |     if (*chnid == *chain)
      |         ^~~~~~
prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  182 |       switch(mtype)
      |       ^~~~~~
prunebsc.c:173:8: note: ‘mtype’ was declared here
  173 |   Int4 mtype, molecule_id;
      |        ^~~~~
prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  102 |   Int4 mtype;
      |        ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objcdd.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcdd.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcdd.c: In function ‘CddIdFree’:
objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   53 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable]
   85 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddIdSetAsnRead’:
objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable]
  245 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddAsnRead’:
objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  402 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddSetAsnRead’:
objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  798 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable]
  795 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddTreeAsnRead’:
objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  935 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable]
  934 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddTreeSetAsnRead’:
objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable]
 1144 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodesAsnRead’:
objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1281 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1280 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddProjectAsnRead’:
objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1478 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddOrgRefAsnRead’:
objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1668 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1667 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddOrgRefSetAsnRead’:
objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1838 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable]
 1835 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodeDescrFree’:
objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1932 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1967 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’:
objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2130 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable]
 2127 |    DataVal av;
      |            ^~
objcdd.c: In function ‘GlobalIdAsnRead’:
objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2262 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddRepeatAsnRead’:
objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2450 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddBookRefAsnRead’:
objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2627 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2626 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddDescrSetAsnRead’:
objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3183 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable]
 3180 |    DataVal av;
      |            ^~
objcdd.c: In function ‘MatrixAsnRead’:
objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3315 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘TriangleAsnRead’:
objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3504 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘UpdateCommentFree’:
objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3641 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘UpdateAlignAsnRead’:
objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3889 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘RejectIdAsnRead’:
objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4064 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘FeatureEvidenceFree’:
objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4188 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlignAnnotAsnRead’:
objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4437 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘AlignAnnotSetAsnRead’:
objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4606 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable]
 4603 |    DataVal av;
      |            ^~
objcdd.c: In function ‘DomainParentAsnRead’:
objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4738 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4737 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SequenceTreeAsnRead’:
objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4919 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4918 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlgorithmTypeAsnRead’:
objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5107 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5106 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘Children_footprintAsnRead’:
objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5595 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5594 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘NodeAnnotationAsnRead’:
objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5887 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5886 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerRectAsnRead’:
objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6053 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerAsnRead’:
objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6235 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddScriptAsnRead’:
objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6409 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from objcdd.c:6:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:6:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:7:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  134 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2016 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddDescrAsnRead’:
objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3007 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3746 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4293 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5561 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c:5510:10: note: ‘choice’ was declared here
 5510 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddutil.c: In function ‘CddGetPmIds’:
cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable]
  649 |   Boolean       bRefOpen = FALSE;
      |                 ^~~~~~~~
cddutil.c: In function ‘CddGetAnnotNames’:
cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  807 |   ValNodePtr      vnp, vnpHead = NULL;
      |                   ^~~
cddutil.c: In function ‘CddCheckForRepeats’:
cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress]
 1034 |   if (!CddHasConsensus) return FALSE;
      |       ^
cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1013 |   Int2                iStatus;
      |                       ^~~~~~~
cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’:
cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                              ^~~~~
cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                       ^~~~~
cddutil.c: In function ‘SeqAlignInform’:
cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1938 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddAlignInform’:
cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2125 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPssmInform’:
cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2248 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPosFreqInform’:
cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2306 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComputation’:
cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2368 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2365 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddCposComputation’:
cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2571 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2568 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddRetrieveBioseqById’:
cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable]
 3379 |   Int2        retcode = 1;
      |               ^~~~~~~
cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable]
 3377 |   Int4        uid = 0;
      |               ^~~
cddutil.c: In function ‘CddCalculateTriangle’:
cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddCalculateQuerySim’:
cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddConsensus’:
cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable]
 3853 |   Int4                m_last, m_frst, s_insert, m_end;
      |                                                 ^~~~~
cddutil.c: In function ‘CddCposCompPart1’:
cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 4247 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddGetNewIndexForThreading’:
cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable]
 4392 |     Int4  i, Index=0;
      |              ^~~~~
cddutil.c: In function ‘CddCposComp’:
cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4474 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4745 |   ValNodePtr              ColumnHead, LetterHead, newRow, RowHead, newLetter;
      |                                                           ^~~~~~~
cddutil.c: In function ‘CddDumpTaxLinks’:
cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable]
 5727 |   Int4         txid = 0, gi = 0;
      |                ^~~~
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
 6267 | /*---------------------------------------------------------------------------*/
      |  
In file included from ../include/cddutil.h:205,
                 from cddutil.c:353:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:353:
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function]
 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:349:
../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  343 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable]
  342 | static AsnTypePtr at = atx;
      |                   ^~
../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  341 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "cdd.h24";
      |               ^~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
In function ‘strncpy’,
    inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from cddutil.c:336:
cddutil.c: In function ‘CddRegularizeFileName’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’
  984 |     Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx));
      |                          ^~~~~~~~~~
cddutil.c: In function ‘CddCopyMSLDenDiag’:
cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3015 |           ddpTail->next = ddpNew;
      |           ~~~~~~~~~~~~~~^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from cddutil.c:336:
cddutil.c: In function ‘CddCalculateTriangle’:
../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
cddutil.c:3415:19: note: ‘buffer1’ was declared here
 3415 |    Uint1Ptr       buffer1, buffer2, buffer3;
      |                   ^~~~~~~
cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3524 |        pscTail->next = psc; pscTail = psc; psc = NULL;
      |        ~~~~~~~~~~~~~~^~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4974 |     return(pssm);
      |           ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cddposutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddposutil.c:119:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddposutil.c: In function ‘CddfindThreshSequences’:
cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  359 |   SeqIdPtr    thisId;         /* Ids of target sequences in current SeqAlign */
      |               ^~~~~~
cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’:
cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  386 |   SeqIdPtr     thisId;        /* Ids of target sequences in current SeqAlign */
      |                ^~~~~~
cddposutil.c: In function ‘CddposFreqsToMatrix’:
cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((long unsigned int)length * 8)) + (sizetype)((long unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1038 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
cddposutil.c: In function ‘CddposDenseDiagDemographics’:
cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable]
 1094 |    Boolean      is_new_id = FALSE;
      |                 ^~~~~~~~~
cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable]
 1093 |    Int4         segIndex;                   /*Index for which piece we are at*/
      |                 ^~~~~~~~
cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                         ^~~~~~
cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                 ^~~~~~
cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable]
 1091 |    SeqIdPtr     curId; /*Used to compare seq. coming from different SeqAligns*/
      |                 ^~~~~
cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’:
cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable]
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                       ^~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable]
 2040 |       Int4        final_virtual_db_seq=0, final_db_seq=0;
      |                                           ^~~~~~~~~~~~
cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                            ^~~~~~~~~~~~~~~
cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                   ^~~~~~~
cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                              ^~~~~~~~~~~~~~~~~~
cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                  ^~~~~~~~~~
cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable]
 2004 |  OIDListPtr       alias_oidlist;
      |                   ^~~~~~~~~~~~~
cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable]
 2003 |  Boolean          use_private_gilist = FALSE;
      |                   ^~~~~~~~~~~~~~~~~~
cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable]
 2000 |   ValNodePtr       vnp;
      |                    ^~~
cddposutil.c: In function ‘CddposReadAlignment’:
cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable]
 2226 |   Int4         alignPos, queryOffset, subjectOffset, matchLength;
      |                ^~~~~~~~
In file included from ../include/cddutil.h:205,
                 from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddposutil.c:131:
../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function]
  507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
      |                           ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function]
  512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function]
  516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
      |             ^~~~~~~~~~~~~~~
../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function]
  518 | static void CddputMatrixMatrix(FILE *checkFile,
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function]
  522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  591 | static  void            CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
      |                         ^~~~~~~~~~~~~~~~~
../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function]
  592 | static  Int4            CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
      |                         ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function]
  593 | static  SeqIdPtr        CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function]
  623 | static Boolean         HitYet(Int4Ptr retlist, Int4 index, Int4 i);
      |                        ^~~~~~
../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function]
  649 | static CharPtr CddFixForXML(CharPtr pc);
      |                ^~~~~~~~~~~~
cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function]
  971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
      |             ^~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddposComputeSequenceWeights’:
cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  840 |       posSearch->posSigma[qplace] = intervalSigma;
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |       if (Sigma > 0) {
      |          ^
cddposutil.c: In function ‘CddposDemographics’:
cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1199 |          subjectOffset = curSegs->starts[startS] - retrievalOffset;
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1740 |         if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
      |                                               ~^~~~~~~~~~~~~~~~~
cddposutil.c:1246:63: note: ‘min_query_length’ was declared here
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                                               ^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF objmime.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmime.c:76:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmime.c: In function ‘NcbiMimeAsn1Free’:
objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  126 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable]
  173 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataFree’:
objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  382 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  428 |    AsnReadFunc func;
      |                ^~~~
objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable]
  427 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataAsnRead’:
objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable]
  522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BiostrucAlignAsnRead’:
objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  801 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucAlignSeqAsnRead’:
objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqAsnRead’:
objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1220 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqsAsnRead’:
objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1415 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataFree’:
objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1613 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1647 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’:
objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1734 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BundleSeqsAlignsAsnRead’:
objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1973 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:6,
                 from objmime.c:81:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  584 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:521:10: note: ‘choice’ was declared here
  521 |    Uint1 choice;
      |          ^~~~~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1780 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:1733:10: note: ‘choice’ was declared here
 1733 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF strucapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from strucapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function ‘atd’:
thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      | ^~~
thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      | ^~~
thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      |                                                   ^~~~~~
thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                                   ^~~~~~
thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                                   ^~~~~~
thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      | ^~~
thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      | ^~~
thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      |                                              ^~~~~~
thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                              ^~~~~~
thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                              ^~~~~~
thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      | ^~~
thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      |                                       ^~~~
thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      | ^~~
thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      |                                         ^~~~
thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      | ^~~
thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      |                                         ^~~~
thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      | ^~~
thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      |                                         ^~~~
thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      | ^~~
thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      |                                         ^~~~
thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable]
  201 |  float hh;
      |        ^~
thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable]
  198 |  int rf;  /* Reference position for a core element              */
      |      ^~
thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |              ^
thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |            ^
thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable]
  171 |  int nrp;  /* Number of residue-peptide contacts in motif        */
      |      ^~~
thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable]
  170 |  int nrr;  /* Number of residue-residue contacts in motif        */
      |      ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function ‘bwfi’:
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   64 | int nt;  /* Number of threads within specified ensemble cutoff */
      |     ^~
thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
      |                    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function ‘cpal’:
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
  210 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function ‘cpll’:
thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   74 | int nrt;  /* Number of residue types */
      |     ^~~
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
  229 | }
      | ^
thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  220 |   cl->rf.t2[k]=r2;
      |   ~~~~~~~~~~~~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function ‘cprl’:
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
  261 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function ‘cxei’:
thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable]
   94 | int     ntot, ms;
      |               ^~
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
  205 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function ‘g’:
thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable]
   72 | int s0;
      |     ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function ‘salu’:
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
   83 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function ‘sgoi’:
thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |   ^~~
thrdsgoi.c:98:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |                                   ^~~~~
thrdsgoi.c:115:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |   ^~~
thrdsgoi.c:115:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |                                 ^~~~~
thrdsgoi.c:119:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |   ^~~
thrdsgoi.c:119:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |                                 ^~~~~
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
  123 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslor.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function ‘slou’:
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspci.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function ‘spea’:
thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   91 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
  189 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function ‘spel’:
thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   88 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
  188 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function ‘spni’:
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
  238 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function ‘ttb0’:
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
   75 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function ‘zsc’:
thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable]
  107 | int g,gs;
      |       ^~
thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable]
  102 | float tg,tgp,tgm,zsc;         /* Energy of shuffled sequence */
      |                  ^~~
thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable]
   95 | int ps,ms,cs,
      |     ^~
thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable]
   80 | int temp;         /* Random index of the query sequence */
      |     ^~~~
thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable]
   79 |  kk,itr,ii,jj; /* Counters */
      |  ^~
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
  369 | }
      | ^
thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  357 |  ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
      |                                ~~~~~~~^~~~~
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF csim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from csim.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
csim.c: In function ‘set_pam_200’:
csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces]
  163 |  static Int2 wgts[23][23] = { /* the PAM200 matrix */
      |                             ^
  164 | 
  165 |  2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
      |  {                                                                  }
  166 |  -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0,
      |  {                                                                   }
  167 |   0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0,
      |   {                                                                  }
  168 |   0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0,
      |   {                                                                  }
  169 |  -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0,
      |  {                                                                   }
  170 |  -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0,
      |  {                                                                   }
  171 |   0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0,
      |   {                                                                  }
  172 |   1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0,
      |   {                                                                  }
  173 |  -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0,
      |  {                                                                   }
  174 |  -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0,
      |  {                                                                   }
  175 |  -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0,
      |  {                                                                   }
  176 |  -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0,
      |  {                                                                   }
  177 |  -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0,
      |  {                                                                   }
  178 |  -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0,
      |  {                                                                   }
  179 |   1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0,
      |   {                                                                  }
  180 |   1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0,
      |   {                                                                  }
  181 |   1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0,
      |   {                                                                  }
  182 |  -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0,
      |  {                                                                   }
  183 |  -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0,
      |  {                                                                   }
  184 |   0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0,
      |   {                                                                  }
  185 |   1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0,
      |   {                                                                  }
  186 |   1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0,
      |   {                                                                  }
  187 |   0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
      |   {
  188 | };
      | }
csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |          ~~~~~~^~~
csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |                     ~~~~~~^~~
csim.c: In function ‘set_pam_file’:
csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |              ~~~~^~~
csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |                       ~~~~^~~
csim.c: In function ‘big_pass’:
csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  668 |       va = v[A[i]];
      |              ~^~~
csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  692 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘diff1’:
csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  799 |       va = v[A[1]];
      |              ~^~~
csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  805 |             { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
      |                      ~^~~
csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  849 |       va = v[A[i]];
      |              ~^~~
csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                            ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 |       va = v[A[i+1]];
      |              ~^~~~~
csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                            ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                                    ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  893 |       if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
      |                       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
csim.c: In function ‘locate’:
csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  974 |       va = v[A[i]];
      |              ~^~~
csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  991 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1030 |        va = v[A[(plist->m1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1043 |     DIAG((plist->m1), j, c, p+va[B[j]])  /* diagonal */
      |                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1061 |     if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                       ~~~~~~~~^~~~~~~~~~
csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1062 |                                 || fi > rl && fj > cl ) )
      |                                    ~~~~~~~~^~~~~~~~~~
csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1072 |         || fi > rl && fj > cl ) )
      |            ~~~~~~~~^~~~~~~~~~
csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1084 |        va = v[B[(plist->n1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1110 |            DIAG(i, (plist->n1), c, p+va[A[i]])
      |                                         ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1128 |            if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                              ~~~~~~~~^~~~~~~~~~
csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1129 |                  || fi > rl && fj > cl ) )
      |                     ~~~~~~~~^~~~~~~~~~
csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1138 |        if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1139 |                                    || fi > rl && fj > cl ) )
      |                                       ~~~~~~~~^~~~~~~~~~
csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1144 |       if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
      |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
csim.c: In function ‘small_pass’:
csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1186 |       va = v[A[i]];
      |              ~^~~
csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1212 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘display’:
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1360 |  if (i < M || j < N)
      |     ^
csim.c: In function ‘set_pam_file’:
csim.c:227:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  227 |            fscanf(fp, "%f", &weight);      /**get the matrix**/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
csim.c: In function ‘SIM’:
csim.c:1071:56: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                ~~~~~~~~^~~~~~~~~~
csim.c:928:23: note: ‘dj’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                       ^~
csim.c:1071:45: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
csim.c:928:19: note: ‘di’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                   ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF db_slist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from db_slist.c:97:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from dust.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_dust.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   39 | static char const rcsid[] =
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF falign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from falign.c:92:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
falign.c: In function ‘fbld_table’:
falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  490 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  494 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bbld_table’:
falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  517 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  521 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rcbld_table’:
falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  544 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  548 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘ex_table’:
falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  567 |  ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                           ^~
falign.c: In function ‘free_all’:
falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  668 |   if (df = cdiag_prev[l]) {
      |       ^~
falign.c: In function ‘scan’:
falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  688 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  694 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  710 |   if (df = diag_prev[len1+len2-1-pos]) {
      |       ^~
falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  719 |   if (df=diag_prev[l]) {
      |       ^~
falign.c: In function ‘fscan’:
falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  763 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  769 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bscan’:
falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  794 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  800 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rfscan’:
falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  870 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  876 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  881 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  889 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c: In function ‘trcscan’:
falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1476 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1482 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rclocal’:
falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1547 |  if (pf = diag_prev[ocur_diag]) {
      |      ^~
falign.c: In function ‘enterS’:
falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1897 |  if (s = findS(f->bgf)) {
      |      ^
falign.c: In function ‘local’:
falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1958 |  if (pf = diag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘align’:
falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1999 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘calign’:
falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2054 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘malign’:
falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2109 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
At top level:
falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF g_any.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from g_any.c:89:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
g_any.c: In function ‘k_align’:
g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  212 |   va = vv[A[i+1]];
      |           ~^~~~~
g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  229 |    if (j < J2) c = s + va[B[j+1]];
      |                           ~^~~~~
g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  319 |   b2 = PP[t1][b1];
      |          ^
g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  322 |   t2 = PT[t1][b1];
      |          ^
g_any.c: In function ‘z_ALIGN’:
g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable]
  367 |  Int4 check_score;
      |       ^~~~~~~~~~~
g_any.c: In function ‘CHECK_SCORE’:
g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |              ~^~~~~
g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |                      ~^~~~~
At top level:
g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                                   ^~~~~
g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                        ^~~~~
g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |             ^~~~~
g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function ‘SIM2’:
sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable]
   19 |  CharPtr A, B, compB = NULL;
      |                ^~~~~
sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable]
   17 |  SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
      |                          ^~~~
At top level:
sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sim3.c:28:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim3.c: In function ‘locate’:
sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  103 |   ecode = (ecode << 2) + encoding[*p++];
      |                                   ^~~~
sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  105 |   ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                            ^~~~
sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  113 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  115 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  129 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  133 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  152 |   ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
      |                                              ^~~~
sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  155 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
At top level:
sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function]
 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
      |                ^~~~~~~~~~
sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function]
 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length)
      |             ^~~~~~~~~~~~~~~
sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function]
 1048 | static Int4 get_start_pos(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~
sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
  806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
      |             ^~~~~~~~~~~~
sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim3.c: In function ‘locate’:
sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  *j2 = paired_bj+1;
      |        ~~~~~~~~~^~
sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |  *j1 = paired_fj;
      |  ~~~~^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sim4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sim4.c:18:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  630 |   while(i1 = sgp->Blist[i].next) {
      |         ^~
sim4.c: In function ‘greedy’:
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1770 |              if (row == 0 && col == 0)
      |                 ^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1794 |              if (row == 0)
      |                 ^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1838 |              if (col == 0)
      |                 ^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1962 |                if (row == m && col == n)
      |                   ^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1991 |                if (row == m)
      |                   ^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2037 |                if (col == n)
      |                   ^
sim4.c: In function ‘DISPLAY’:
sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2625 |       if (a >= ALINE+50 || i >= M && j >= N)
      |                            ~~~~~~~^~~~~~~~~
At top level:
sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function]
 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
      |             ^~~~~~~
sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function]
 2563 | static void S2A(EditScriptPtr head, Int4Ptr S)
      |             ^~~
sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
      |             ^~~~~~~~~~~~
sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim4.c: In function ‘locate’:
sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2919 |   *j2 = paired_bj + 1;
      |         ~~~~~~~~~~^~~
sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2918 |   *j1 = paired_fj;
      |   ~~~~^~~~~~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                                     ^
sim4.c:1609:18: note: ‘forth’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |                  ^~~~~
sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                      ^
sim4.c:1609:12: note: ‘back’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |            ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF simutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from simutil.c:103:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
simutil.c: In function ‘make_align’:
simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
  495 |   Uint1 strand;
      |         ^~~~~~
At top level:
simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function]
  848 | static Boolean is_alu_seq(CharPtr name)
      |                ^~~~~~~~~~
simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function]
  814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
      |                ^~~~~~~~~~~~
simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function]
  344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
      |                 ^~~~~~~
simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF slist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from slist.c:101:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF sec.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sec.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sec.c: In function ‘Region’:
sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                    ~~~~^~~
sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                             ~~~~^~~
At top level:
sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sec.c: In function ‘Region’:
sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     LB[i] = old_l;
      |     ~~~~~~^~~~~~~
sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:172:20: note: ‘ppj’ was declared here
  172 |  Int4 pi, pj, ppi, ppj;
      |                    ^~~
sec.c:172:15: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |  Int4 pi, pj, ppi, ppj;
      |               ^~~
sec.c:172:7: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |  Int4 pi, pj, ppi, ppj;
      |       ^~
sec.c:502:10: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  502 |       tr = Min(cj + Width, ej);
      |          ^
sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  163 |  Int4 bi, bj, ei, ej, t;
      |               ^~
sec.c:516:13: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  516 |       old_l = Max(tl,bj);
      |             ^
sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |                ^
sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |      MemFree(RB+bi);
      |              ~~^~~
sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |              ~~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function ‘find_orf’:
tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |                          ^~~~
tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |             ^~~~~~
At top level:
tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function]
  977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
      |             ^~~~~~~~~~~~~~~~~~~~
tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toasn3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from toasn3.c:10:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
toasn3.c: In function ‘FindOrg’:
toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 1444 |     Int4        len;
      |                 ^~~
toasn3.c: In function ‘CheckQualsWithComm’:
toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1731 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CheckQuals’:
toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1768 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CountSourceFeat’:
toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2570 |     Pointer pnt;
      |             ^~~
toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2561 |     ValNodePtr    vnp;
      |                   ^~~
toasn3.c: In function ‘TASNTrimInternalSemicolons’:
toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 4155 |   CharPtr  tmp;
      |            ^~~
toasn3.c: In function ‘ImpFeatToProtRef’:
toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable]
 4861 |     Boolean lfree = FALSE, partial5, partial3;
      |             ^~~~~
toasn3.c: In function ‘RemovePeptideImpFeats’:
toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
 5160 |     ImpFeatPtr         ifp;
      |                        ^~~
At top level:
toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function]
 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
      |                ^~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from toasn3.c:19:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $";
      |                   ^~~~~
toasn3.c: In function ‘FixNucProtSet’:
toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2205 |         bseg->annot = sap;
      |         ~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function ‘ChkSegset’:
toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
   64 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
   63 |   OrgRefPtr     orp;
      |                 ^~~
toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   60 |   Pointer       pnt;
      |                 ^~~
toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
   55 |   ValNodePtr    vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
      |                 ^~~
toporg.c: In function ‘ChkNucProt’:
toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
  608 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c: In function ‘StripBSfromParts’:
toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable]
 1330 |   Boolean       empty;
      |                 ^~~~~
toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable]
 1329 |   BSMapPtr      bsmp;
      |                 ^~~~
toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable]
 1328 |   ValNodePtr    descr, vnp, set_vnp;
      |                             ^~~~~~~
toporg.c: In function ‘MapsToGenref’:
toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable]
 2021 |   SeqLocPtr     loc;
      |                 ^~~
toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 2016 |   ValNodePtr    descr = NULL, head, last, vnp;
      |                 ^~~~~
toporg.c: In function ‘FindOldLineage’:
toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable]
 2606 |   CharPtr       lineage;
      |                 ^~~~~~~
toporg.c: In function ‘ArePubsMergeableForFig’:
toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses]
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |                                    ^~
toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
      |            (                      )
toporg.c: In function ‘StripBadTitleFromProteinProducts’:
toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 5311 |   Uint1              tech;
      |                      ^~~~
toporg.c: In function ‘FindPubWithFig’:
toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable]
 5647 |     Int4 a = 0;
      |          ^
toporg.c: In function ‘AddMissingGeneXref’:
toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 5955 |   Int2               count;
      |                      ^~~~~
toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’:
toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable]
 7093 |   CharPtr        str, ttl = NULL;
      |                  ^~~
toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable]
 7086 |   ObjValNodePtr  ovp;
      |                  ^~~
At top level:
toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function]
 5475 | static void SynchronizePseudogenesProc (
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function]
 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~
toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $";
      |                   ^~~~~
toporg.c: In function ‘MergeEquivCitSubs’:
toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3905 |   if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE;
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3925:18: note: ‘csp1’ was declared here
 3925 |   CitSubPtr      csp1, csp2;
      |                  ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pobutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pobutil.c: In function ‘build_repeat_feat’:
pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable]
  187 |  Char c='%';
      |       ^
pobutil.c: In function ‘merge_StdSeg’:
pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable]
 1033 |  Int4 start_1, stop_1, start_2, stop_2;
      |       ^~~~~~~
pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable]
 1031 |  Int4 overlap = -1;
      |       ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
pobutil.c: In function ‘FindHumanRepeats’:
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2380:2: note: in expansion of macro ‘MemSet’
 2380 |  MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
      |  ^~~~~~
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2381:2: note: in expansion of macro ‘MemSet’
 2381 |  MemSet((Pointer) (&si), sizeof(SeqInt), 0);
      |  ^~~~~~
pobutil.c: In function ‘AluFeat’:
pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable]
 2431 |  Pointer my_userdata;
      |          ^~~~~~~~~~~
At top level:
pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF stsutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from stsutil.c:88:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
stsutil.c: In function ‘InitSTSSearch_r’:
stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable]
  270 |     Int4 StsCount=0;
      |          ^~~~~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
  635 |     CharPtr p;
      |             ^
stsutil.c: In function ‘STSCalculateHash’:
stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  753 |         if ((j = HashCode[*p++]) < 0)
      |                           ^~~~
stsutil.c: In function ‘STSReverse’:
stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  771 |         if ((*t = ComplCode[*s]) == 0)
      |                             ^~
stsutil.c: In function ‘InitHashTable’:
stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |                     ^~~~~~~
stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |             ^~~~~~
stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |                       ^~
stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |          ^~~~~~
stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable]
  907 |     Int4  LineLength, error= FALSE;
      |                       ^~~~~
At top level:
stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function]
  892 | static void STSHashInitFree(STSHashInitPtr sts)
      |             ^~~~~~~~~~~~~~~
stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggadj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggadj.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggadj.c: In function ‘score_possible_splice_sites’:
suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c: In function ‘check_split_codon’:
suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  986 |  vx[seq_or_rev[right_starts-2]]*4+
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  987 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  999 |  vx[seq_or_rev[left_ends+2]] * 4 +
      |     ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1000 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c: In function ‘overlapping_fixer’:
suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1370 |     test_val = vx[seq_or_rev[left_exon_ends]]*16 +
      |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1371 |      vx[seq_or_rev[right_exon_starts-1]];
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1373 |      test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1375 |      test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
At top level:
suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggest.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggest.c:199:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggest.c: In function ‘get_frames’:
suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |             ~^~~
suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |                           ~^~~
At top level:
suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function]
 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function]
 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
      | ^~~~~~~~~~~~~~~~~~~
suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF suggslp.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggslp.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggslp.c: In function ‘MakeReverseSequence’:
suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  190 |   *t++ = r[*--s];
      |            ^~~~
At top level:
suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blast.c:2572:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast.c: In function ‘BlastReevaluateWithAmbiguities’:
blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable]
 2954 |  Uint1Ptr query_start, query_end, subject_real_start=NULL;
      |                        ^~~~~~~~~
blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable]
 2949 |  Int4 context, hspcnt, hspcnt_max, index, index1, status;
      |                ^~~~~~
blast.c: In function ‘BlastGetVirtualOIDList’:
blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3179 |         if (virtual_oidlist = rdfp_chain->oidlist) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastGetDbChunk’:
blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3210 |         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastCreateQueryDNAP’:
blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable]
 4100 |     Uint1 strand_option;
      |           ^~~~~~~~~~~~~
blast.c: In function ‘BlastReapPartialHitlistByEvalue’:
blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 6486 |          else
      |          ^~~~
blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 6490 |      if( !search->mult_queries )
      |      ^~
blast.c: In function ‘BlastWordFinder_contig’:
blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 7094 |  register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                ^~~~~~~~~~~~~
blast.c: In function ‘BlastWordExtend’:
blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7835 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNewWordExtend’:
blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7982 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNtWordFinder_mh’:
blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 8843 |         register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                       ^~~~~~~~~~~~~
blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable]
 8842 |         Int4            s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
      |                                                                                                       ^~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastNtWordFinder’:
blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 9076 |         Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |              ^~~~~~~~~~~~~
blast.c: In function ‘BlastSaveCurrentHitlist’:
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
10115 |         if( hitlist_max > 1 )
      |           ^
blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9785 |  Int4 query_length;
      |       ^~~~~~~~~~~~
blast.c: In function ‘SumHSPEvalue’:
blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable]
10588 |    Int4 gap_size, num, subject_length;
      |         ^~~~~~~~
blast.c: In function ‘link_hsps’:
blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable]
11267 |  Boolean frame_change, linked_set, ignore_small_gaps;
      |          ^~~~~~~~~~~~
At top level:
blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $";
      |                   ^~~~~
blast.c: In function ‘blastMergeFilterLocs’:
blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3985 |        dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue;
      |        ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastLinkHsps’:
blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10455 |                 search->current_hitlist = orig_hitlist;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastutl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastutl.c:1836:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastutl.c: In function ‘BlastSeqLocFilterEx’:
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
 7554 | stop_timer("after repeat filtering");
      |           ^
blastutl.c: In function ‘BlastPreliminaryGappedScore’:
blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9853 |  Int4 index, max_offset = 0, query_length, min_score;
      |                              ^~~~~~~~~~~~
blastutl.c: In function ‘BlastGetGappedScore’:
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
10282 | stop_timer("after BlastGappedScoreInternal");
      |           ^
At top level:
blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $";
      |                   ^~~~~
blastutl.c: In function ‘BlastNtFindWords’:
blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11445 |      end = MIN(end, len-initial_wordsize);
blastutl.c: In function ‘BlastFindWords’:
blastutl.c:11522:43: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11522 |  Int4    loop_increment, loop_increment2, stop;
      |                                           ^~~~
blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11711 |     start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11704 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11695 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWords_Old’:
blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11931 |     start_score2 += MtrxScorePosSearch(search->sbp,
blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11924 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11915 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWordsEx’:
blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12124 |                 start_score2 += posMatrix[offset+index2][*(words+index2)];
      |                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12118 |                 start_score = second_score + first_score;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12110 |                 diff2 += diff;
      |                 ~~~~~~^~~~~~~
blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’:
blastutl.c:9008:42: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9008 |     SeqAlignPtr seqalign, seqalign_var, *seqalign_array;
      |                                          ^~~~~~~~~~~~~~
blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’:
blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9670 |   HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps);
      |                            ~~~~~^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastool.c:946:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastool.c: In function ‘BlastScaleMatrix’:
blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 3032 |     else
      |     ^~~~
blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 3035 |  if (new_lambda > lambda)
      |  ^~
blastool.c: In function ‘OOFBlastHSPGetNumIdentical’:
blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable]
 6081 |    Int2 context;
      |         ^~~~~~~
At top level:
blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $";
      |                   ^~~~~
blastool.c: In function ‘BlastInsertList2Heap’:
blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3595 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BlastFreeHeap’:
blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3687 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BLASTFilterOverlapRegions’:
blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4531 |             tail->next = seqalign;
      |             ~~~~~~~~~~~^~~~~~~~~~
blastool.c: In function ‘BlastPrintAlignInfo’:
blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4800 |             sap->next = SeqAlignNew();
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~
blastool.c: In function ‘MegaBlastPrintAlignInfo’:
blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |                              ^~~~~~~~~~~~~~~~~~
blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |            ^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastconcat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastconcat.c:89:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastconcat.c: In function ‘BlastMakeFakeBspConcat’:
blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
  648 |  SeqLocPtr slp = NULL;
      |            ^~~
At top level:
blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF splutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from splutil.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/gapxdrop.h:150,
                 from gapxdrop.c:368:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gapxdrop.c: In function ‘ALIGN_EX’:
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  864 |       if (s == 1)
      |          ^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  867 |       if (s == 2)
      |          ^
At top level:
gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg0.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg0.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg0.c: In function ‘g_band0_align’:
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  273 |       if(leftd >= 1)
      |         ^
At top level:
bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg1.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg1.c: In function ‘gband_quadratic’:
bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
bandalg1.c: In function ‘g_band1_align’:
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  205 |     if(leftd >= 1)
      |       ^
At top level:
bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg2.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                        ^~~~~
bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                 ^~~~~
bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable]
  207 |   register Uint1 AA;
      |                  ^~
At top level:
bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:202:38: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  202 |   Int4 rmid, k =0, l=0, r, v, kt, X, Y;
      |                                      ^
In file included from bandalg2.c:36:
../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k));
      |                                                                            ^
bandalg2.c:202:35: note: ‘X’ was declared here
  202 |   Int4 rmid, k =0, l=0, r, v, kt, X, Y;
      |                                   ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg3.c:37:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
At top level:
bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:185:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  185 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  313 |   if(X != M) _DEL(M - X)
      |                     ^
bandalg3.c:185:25: note: ‘X’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg4.c:37:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg4.c: In function ‘g_band4_align_small’:
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  826 |     if (e == 1)
      |        ^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  829 |     if (e == 2)
      |        ^
bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable]
  630 |   Int4 band, j;
      |        ^~~~
At top level:
bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg4.c: In function ‘g_band4_align’:
bandalg4.c:534:17: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |          ~~~~~~~^~~~~~~~~
bandalg4.c:534:9: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |         ^
bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |       g_band4_align(A, B, r - 1, r + rmid, rmid + 1,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  563 |      MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data);
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bandalg4.c:640:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  640 |   Int4 ib, best=MININT, X, Y;
      |                            ^
In file included from bandalg4.c:37:
../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k));
      |                                                                            ^
bandalg4.c:640:25: note: ‘X’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalg5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg5.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   56 |   Int4 c, i, j;
      |              ^
bandalg5.c: In function ‘g_band5_align’:
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  292 |     if (e == 1)
      |        ^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  295 |     if (e == 2)
      |        ^
At top level:
bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:146:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  146 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  319 |   if (X != M) _DEL(M - X);
      |                      ^
bandalg5.c:146:25: note: ‘X’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bandalgn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from bandalgn.c:118:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalgn.c: In function ‘ExtendSeqAlign’:
bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1113 |        DenseDiagPtr  ddp;
      |                      ^~~
bandalgn.c: In function ‘CC_ExtendSeqAlign’:
bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1188 |        DenseDiagPtr  ddp;
      |                      ^~~
At top level:
bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable]
  699 | static Uint1 HSblastna_to_ncbi4na[] = {   1, /* A, 0 */
      |              ^~~~~~~~~~~~~~~~~~~~
bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalgn.c: In function ‘LocalBandToEditBlock’:
bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |   lbsp->edit_block = edit_block;
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bandalgn.c: In function ‘SetLowUpFromBlast’:
bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |    if (maxsc < val) {
      |       ^
bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1060 |    if (maxlen < alnlen) {
      |       ^
bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1070 |    maxy = MAX(maxy,maxdi_up);
bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1069 |    miny = MIN(miny,mindi_low);
bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1055 |     maxy = maxdi + width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1056 |     miny = mindi - width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c: In function ‘GetAlignExtremes’:
bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |  *yy2 = y2;
      |  ~~~~~^~~~
bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1308 |  *yy1 = y1;
      |  ~~~~~^~~~
bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1307 |  *xx2 = x2;
      |  ~~~~~^~~~
bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1306 |  *xx1 = x1;
      |  ~~~~~^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blastkar.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable]
 2373 | static BLAST_LetterProb Altschul_prob[] = {
      |                         ^~~~~~~~~~~~~
blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable]
 2347 | static BLAST_LetterProb Dayhoff_prob[] = {
      |                         ^~~~~~~~~~~~
blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable]
 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
      |             ^~~~~~~~~~~~~~~~~
blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable]
 1053 | static Nlm_FloatHi  blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
      |                     ^~~~~~~~~~~~~~~~~~
blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $";
      |                   ^~~~~
blastkar.c: In function ‘BlastScoreBlkMatCreate’:
blastkar.c:1574:36: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1574 |  sprintf(buffer, "blastn matrix:%ld %ld", (long) sbp->reward, (long) sbp->penalty);
      |                                    ^
blastkar.c:1574:18: note: directive argument in the range [-2147483648, 2147483647]
 1574 |  sprintf(buffer, "blastn matrix:%ld %ld", (long) sbp->reward, (long) sbp->penalty);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 38 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF actutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
actutils.c: In function ‘SlideToHit’:
actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |                       ^~~~
actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |             ^~~~~~~~
actutils.c: In function ‘ResolveSpinConflict’:
actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |                                   ^~~~~~~~~~~~~
actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |            ^~~~~~~~~~~~~
actutils.c: In function ‘ACT_FindBestAlnByDotPlot’:
actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2002 |    Uint1           strand;
      |                    ^~~~~~
actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2001 |    Int4            start2;
      |                    ^~~~~~
actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2000 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function]
 3132 | static void DumpAlignments (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~
actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function]
 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function]
 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
      |                ^~~~~~~~~~~~~
actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function]
 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
      |             ^~~~~~~~~~~~~
actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function]
 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
      |                ^~~~~~~~~~
actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function]
  749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
      |             ^~~~~~~~~~~~~~~~
actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
actutils.c: In function ‘GetOldBlastAlignmentPiece’:
../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
actutils.c:3089:25: note: ‘program’ was declared here
 3089 |    CharPtr              program;
      |                         ^~~~~~~
actutils.c: In function ‘ACT_FindPeakScores’:
actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1342 |             ats_newprev->next = ats_new;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~
actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1321 |             ats_prev->next = ats;
      |             ~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit.c:402:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit.c: In function ‘posDemographics’:
posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1110 |    Int4 numseq, numSeqAligns;  /*number of matching sequences and SeqAligns*/
      |                 ^~~~~~~~~~~~
posit.c: In function ‘posFreqsToMatrix’:
posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((long unsigned int)length * 8)) + (sizetype)((long unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1679 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
posit.c: In function ‘posComputePseudoFreqs’:
posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable]
 1840 |    Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
      |                ^~~~~~
posit.c: In function ‘WposComputation’:
posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1988 |     Int4 i, numSeqAligns, numseq, qlength;
      |             ^~~~~~~~~~~~
posit.c: In function ‘posPrintInformation’:
posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable]
 2319 |   Int4 querySize;
      |        ^~~~~~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3064:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3064 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3070:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3070 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3079:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3079 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3086:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3086 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posPreprocessAlignment’:
posit.c:3137:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3137 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3152:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3152 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posReadAlignment’:
posit.c:3253:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3253 |  fgets(nextline, ALIGN_LINE_LENGTH,checkFile);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $";
      |                   ^~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3090 |       testCountSeqs++;
      |       ~~~~~~~~~~~~~^~
posit.c: In function ‘posComputeSequenceWeights’:
posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1447 |        posSearch->posSigma[qplace] = intervalSigma;
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1424 |        if (Sigma > 0) {
      |           ^
posit.c: In function ‘posReadCheckpoint’:
posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2873 |   if (i < pssm->numColumns || j < pssm->numRows) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
posit.c:2702:11: note: ‘j’ was declared here
 2702 |   Int4 i, j, c;
      |           ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from lookup.c:308:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/blastdef.h:922,
                 from ../include/blast.h:470,
                 from lookup.c:309:
lookup.c: In function ‘MegaBlastBuildLookupTable’:
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1047 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1051 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1078 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1082 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable]
  914 |    register Int4 ecode, extra_code;
      |                         ^~~~~~~~~~
At top level:
lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $";
      |                   ^~~~~
lookup.c: In function ‘MegaBlastBuildLookupTable’:
lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  975 |       if (word_weight >= 12) {
      |          ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF readdb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
readdb.c: In function ‘readdb_parse_db_names’:
readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2503 |         if (**filenames == '"')
      |            ^
readdb.c: In function ‘s_GetBlastDirInfo’:
readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 2734 |     memset(blast_dir, 0, sizeof(blast_dir));
      |                                ^
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3167:33: warning: format ‘%lld’ expects argument of type ‘long long int *’, but argument 3 has type ‘Nlm_Int8 *’ {aka ‘long int *’} [-Wformat=]
 3167 |                 sscanf(ptr, "%lld", &(rdbap->len));
      |                              ~~~^   ~~~~~~~~~~~~~
      |                                 |   |
      |                                 |   Nlm_Int8 * {aka long int *}
      |                                 long long int *
      |                              %ld
readdb.c: In function ‘IndexFileExists’:
readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3320 |         if (rdfp->cih)
      |         ^~
readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3326 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3400 |         if (rdfp->cih && rdfp->aliasfilebit == 0)
      |         ^~
readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3406 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c: In function ‘FindBlastDBFileEx’:
readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable]
 3480 |     CharPtr    buffer, buffer1, envp = NULL;
      |                                 ^~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable]
 3558 |     CharPtr    charptr, envp = NULL;
      |                         ^~~~
readdb.c: In function ‘readdb_get_link’:
readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable]
 4752 |    Boolean loaded_new = FALSE;
      |            ^~~~~~~~~~
readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable]
 4751 |    ReadDBFILEPtr last, last_used, rdfp_var;
      |                        ^~~~~~~~~
readdb.c: In function ‘readdb_check_oid’:
readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses]
 4896 |                  if (rdfp_var->start <= oid <= rdfp_var->stop)
      |                      ~~~~~~~~~~~~~~~~^~~~~~
readdb.c: In function ‘readdb_seqid2fasta’:
readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable]
 5236 |                 Int4 dummy_gi = 0; /* Not used, should have been handled above. */
      |                      ^~~~~~~~
readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable]
 5180 |     CharPtr chptr = NULL;
      |             ^~~~~
readdb.c: In function ‘FDBuildOldStyleDefline’:
readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 6366 |     MemSet(defline, '\0', sizeof(defline));
      |                                 ^
readdb.c: In function ‘PrintDbInformationWithRID’:
readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 7571 |     if (rdfp == FALSE)
      |              ^~
readdb.c:7571:9: note: did you mean to dereference the pointer?
 7571 |     if (rdfp == FALSE)
      |         ^
readdb.c: In function ‘FDBLoadMembershipsTable’:
readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable]
 8265 |         const char* fn_name = NULL;
      |                     ^~~~~~~
readdb.c: In function ‘SeqIdE2Index’:
readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8613 |     if ((tsip->version > 0) && (tsip->release == NULL))
      |     ^~
readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8615 |         break;
      |         ^~~~~
readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8618 |     if (tsip->version > 0)
      |     ^~
readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8620 |         break;
      |         ^~~~~
readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable]
 8577 |     CharPtr tmp, ptr=NULL;
      |             ^~~
readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable]
 8576 |     Uint1 tmptype;
      |           ^~~~~~~
readdb.c: In function ‘SeqIdSetE2Index’:
readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable]
 8881 |     SeqIdPtr oldanp;
      |              ^~~~~~
readdb.c: In function ‘FindDBbyGI’:
readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
11397 |    if (gi > cih->maxgi)
      |    ^~
readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
11400 |     cigi = cih->ci + gi;
      |     ^~~~
readdb.c: In function ‘Fastacmd_Search_ex’:
readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable]
12080 |     Int4             guess_gi = -1;
      |                      ^~~~~~~~
readdb.c: In function ‘DumpOneSequence’:
readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12407 |      fprintf(fp, "%d\n", gi->data.intvalue);
      |                   ~^     ~~~~~~~~~~~~~~~~~
      |                    |             |
      |                    int           Nlm_Int8 {aka long int}
      |                   %ld
readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable]
12417 |      Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
      |              ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from readdb.c:2067:
readdb.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function]
12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
      | ^~~~~~~~~~~~~~~~~~~~
In file included from readdb.c:2060:
../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable]
  191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
      |              ^~~~~~
../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable]
  183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
      |              ^~~~~~~~~~~
readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $";
      |                   ^~~~~
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3084 |                         sprintf(full_buffer, "%s%c%s", file_path,
      |                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3090 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2994 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘Int4ListReadFromFile’:
readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2656 |     sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname));
      |                               ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’:
readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2277 |       sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2296 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2259 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_get_taxonomy_names’:
readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5679 |             ufp_last->next = ufp;
      |             ~~~~~~~~~~~~~~~^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
readdb.c: In function ‘readdb_get_descriptor’:
../include/ncbimem.h:192:21: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  192 | #define Nlm_MemCpy  memcpy
      |                     ^~~~~~
readdb.c:6622:26: note: ‘new_defline_length’ was declared here
 6622 |     Int4 defline_length, new_defline_length;
      |                          ^~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3600 |         sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3635:45: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3635 |         sprintf(rdfp->full_filename, "%s%s%s", database_dir, DIRDELIMSTR, Nlm_FileNameFind(filename));
      |                                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3633:45: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3633 |         sprintf(rdfp->full_filename, "%s%s%s", database_dir, DIRDELIMSTR, filename);
      |                                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3660:53: warning: ‘%s’ directive writing 11 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
 3660 |             sprintf(commonindex_full_filename, "%s%s%s", database_dir, DIRDELIMSTR, COMMONINDEX_FN);
      |                                                     ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3671 |     sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n');
      |                         ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3811 |     sprintf(buffer,  "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3812 |     sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3825 |     sprintf(buffer,  "%s.%csd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3826 |     sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3845 |         sprintf(buffer,  "%s.ppd", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3846 |         sprintf(buffer1, "%s.ppi", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘GetAccList’:
readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11821 |           AccListLast->next = AccListTmp;
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
readdb.c: In function ‘FD_ConstructMultivolumeDBList’:
readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                               ^~~~~
readdb.c:12690:29: note: directive argument in the range [0, 2147483646]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:12688:31: warning: ‘%02ld’ directive writing between 2 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12688 |             sprintf(numstr, ".%02ld ", (long) i);
      |                               ^~~~~
readdb.c:12688:29: note: directive argument in the range [0, 2147483646]
12688 |             sprintf(numstr, ".%02ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisam.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisam.c:198:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisam.c: In function ‘ISAMMakeStringIndex’:
ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable]
  842 |                 Int4 file_pos = ftell(data->db_fd);
      |                      ^~~~~~~~
ncbisam.c: In function ‘ISAMInitSearch’:
ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable]
 1399 |     Int4 reserved2;
      |          ^~~~~~~~~
At top level:
ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $";
      |                   ^~~~~
ncbisam.c: In function ‘ISAMMakeIndex’:
ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  984 |     NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
      |                     ^~~~~~~~~~~
ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  983 |     Uint4Ptr KeyInfo, KeySamples;
      |              ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘ISAMCreateDatabase’:
../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1181:13: note: ‘prevterm’ was declared here
 1181 |     CharPtr prevterm;
      |             ^~~~~~~~
In file included from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbisam.c:198:
../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  246 | #define ErrLogPrintf  Nlm_ErrLogPrintf
      |                       ^~~~~~~~~~~~~~~~
ncbisam.c:1177:37: note: ‘field_in’ was declared here
 1177 |     unsigned long uid_in, uid_last, field_in;
      |                                     ^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘NISAMSearch’:
../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here
 1622 |     NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart;
      |                                                       ^~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here
 1619 |     Int4 NumElements, *KeyPage, *KeyPageStart;
      |                                  ^~~~~~~~~~~~
ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1750 |             Key = SwapUint4(KeyPage[current]);
      |                                    ^
ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1593 |     *Start = SampleNum * data->PageSize;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
ncbisam.c:1618:27: note: ‘SampleNum’ was declared here
 1618 |     Int4 Start = 0, Stop, SampleNum;
      |                           ^~~~~~~~~
ncbisam.c: In function ‘SISAMSearch’:
ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2373 |     if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbisort.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from ../include/ncbisrti.h:60,
                 from ncbisort.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisort.c: In function ‘SORTFracCompare’:
ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |            ^~~~
ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |                              ^~~~
In file included from ncbisort.c:86:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function]
  213 | static void inthandler(int i);
      |             ^~~~~~~~~~
ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salign.h:10,
                 from salign.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salign.c: In function ‘BandAlignTwoSeqLocsFunc’:
salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable]
  173 |   Boolean   is_prot;
      |             ^~~~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable]
  391 |               totalvalmax = INT4_MAX,
      |               ^~~~~~~~~~~
salign.c: In function ‘link_solution’:
salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable]
 1188 |   Boolean     first = TRUE;
      |               ^~~~~
At top level:
salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $";
      |                   ^~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  455 |      SeqAlignSetFree (salpdup);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
salign.c: In function ‘TranslateSeqLoc.constprop’:
salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  660 |   return slpp;
      |          ^~~~
salign.c: In function ‘BlastTwoSeqLocs’:
salign.c:591:18: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |      sit->strand = strand2;
      |      ~~~~~~~~~~~~^~~~~~~~~
salign.c:589:18: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  589 |      sit->strand = strand1;
      |      ~~~~~~~~~~~~^~~~~~~~~
salign.c: In function ‘BlastBandAlignTwoSeqLocs.isra.0’:
salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |      tail->next = salptmp;
      |      ~~~~~~~~~~~^~~~~~~~~
salign.c:1408:15: note: ‘tail’ was declared here
 1408 |               tail,
      |               ^~~~
salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:30: note: ‘stop’ was declared here
 1301 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:22: note: ‘start1’ was declared here
 1301 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:30: note: ‘stop’ was declared here
 1229 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:22: note: ‘start1’ was declared here
 1229 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c: In function ‘SeqLocListToSeqAlign’:
salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |            salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF salptool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from salptool.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salptool.c: In function ‘MergeTwoDspBySIM4’:
salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable]
  285 |  Boolean has_overlap;
      |          ^~~~~~~~~~~
salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
  281 |  Int4 gap=0,gap_1, gap_2;
      |       ^~~
salptool.c: In function ‘extend_dsp_ends’:
salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1329 |                     else
      |                     ^~~~
salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1331 |    if(extend_len > 0)
      |    ^~
salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1346 |                     else
      |                     ^~~~
salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1348 |    if(extend_len > 0)
      |    ^~
salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1363 |                     else
      |                     ^~~~
salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1365 |    if(extend_len > 0)
      |    ^~
salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1380 |                     else
      |                     ^~~~
salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1382 |    if(extend_len > 0)
      |    ^~
In file included from ../include/sqnutils.h:51,
                 from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salptool.c:14:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function]
 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
      |                        ^~~~~~~~~~~~~
salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function]
 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function]
 1453 | static Int4 getlengthforid (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~~
salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function]
 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
      |                ^~~~~~~~~~~~~~
salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function]
  838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
      |             ^~~~~~~~~~~~~~~~~~~
salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
   46 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from urkutil.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkpcc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkpcc.h:54,
                 from urkpcc.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkptpf.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from urkptpf.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkepi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkepi.h:54,
                 from urkepi.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkepi.c: In function ‘PredictEpiI0’:
urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  214 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  239 |       episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
      |                                                           ^~~~
urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  240 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  241 |       episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
      |                                                         ^~~~
urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  263 |       episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                           ^~~~~~~~~~~~~
urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  264 |       epip->epiarray[*(seq-window)] -= 1;
      |                      ^~~~~~~~~~~~~
urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  265 |       episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                         ^~~~~~~~~~~~~
urkepi.c: In function ‘OptimizeEpiComp’:
urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  605 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  621 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  651 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  657 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c: In function ‘OptimizeEpiHP’:
urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  782 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  797 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  837 |           epip->epiarray[seq[n]] -= 1;
      |                          ~~~^~~
urkepi.c: In function ‘OptimizeEpiProbFunc’:
urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  982 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  994 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
At top level:
urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkepi.c: In function ‘FilterEpi’:
urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |         cfap->right = right;
      |         ~~~~~~~~~~~~^~~~~~~
urkepi.c:936:56: note: ‘right’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                        ^~~~~
urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1052 |         cfap->left = left;
      |         ~~~~~~~~~~~^~~~~~
urkepi.c:936:50: note: ‘left’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                  ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkfltr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkfltr.h:51,
                 from urkfltr.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkdust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkdust.h:51,
                 from urkdust.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkdust.c: In function ‘DustMe_h’:
urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  196 |             (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
urkdust.c: In function ‘DustForGraph’:
urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable]
  776 |   DustRegionPtr drphead;
      |                 ^~~~~~~
At top level:
urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urksigu.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urksigu.h:57,
                 from urksigu.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
seg.c: In function ‘getprob’:
seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  935 |    ans = ans1 + ans2 - totseq;
      |          ~~~~~^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkbias.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from urkbias.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkcnsrt.h:60,
                 from urkcnsrt.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function]
 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
      |             ^~~~~~~~~
urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkcnsrt.c: In function ‘Scan3Frames’:
urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1385 |     for (i = n; i < length; i++)
      |     ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF urktree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urktree.h:51,
                 from urktree.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pseed3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pseed3.c:176:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’:
pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable]
  230 |     DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
      |                 ^~~~~~~
pseed3.c: In function ‘seedEngineCore’:
pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  507 |     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
      |            ^~~~~~~
pseed3.c: In function ‘output_hits’:
pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable]
 1202 |     Int4 posBaseIndex; /*loop index for copying pos results arrays*/
      |          ^~~~~~~~~~~~
pseed3.c: In function ‘init_order’:
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                                      ^
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                    ~~~~~~~~~~~~~~~~~~^~~
pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1487 |         seedSearch->charMultiple[i] = 0;
      |                                 ^
pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1489 |  if (seedSearch->standardProb[i] > seedepsilon) {
      |                              ^
pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1490 |    matrixRow = matrix[i];
      |                      ^
pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1493 |      if (seedSearch->standardProb[j] > seedepsilon)
      |                                  ^
pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                          ^
pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                                                                      ^
pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1496 |    seedSearch->charMultiple[i] = rowSum;
      |                            ^
At top level:
pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $";
      |                   ^~~~~
pseed3.c: In function ‘seedParallelFill’:
pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations]
  712 |      returnData->seedSearch->name_space[i] = seedSearch->name_space[i];
      |                                              ~~~~~~~~~~~~~~~~~~~~~~^~~
pseed3.c:711:4: note: within this loop
  711 |    for( i = 0; i <= BUF_SIZE; i++)
      |    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pattern1.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  286 |      positionProbability = seedSearch->standardProb[seedSearch->order[c]];
      |                                                     ~~~~~~~~~~~~~~~~~^~~
pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  303 |      positionProbability += seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  317 |      positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c: In function ‘find_hitsS_DNA’:
pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  534 |     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |         ^~~
pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  547 |   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |       ^~~
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
  744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
      |        ^~~
pattern1.c: In function ‘and’:
pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  750 |       if (result[i] = (a[i] & b[i]))
      |           ^~~~~~
pattern1.c: In function ‘align’:
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1102 |    if (leftd >= 1)
      |       ^
pattern1.c: In function ‘pat_output’:
pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1637 |  else
      |  ^~~~
pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1639 |           ValNodeCopyStr(info_vnp, 0, buffer);
      |           ^~~~~~~~~~~~~~
At top level:
pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $";
      |                   ^~~~~
pattern1.c: In function ‘get_patL’:
pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |     *end = wordIndex*BITS_PACKED_PER_WORD+j;
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘align.isra.0’:
pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1158 |  score = (CDrow-1)->CC;
      |  ~~~~~~^~~~~~~~~~~~~~~
pattern1.c: In function ‘get_patLL’:
pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1393 |     for (j = 0; j < pos; j+= wordIndex) {
      |     ^~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:192:11: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  192 |     Int4  tj; /*temporary copy of j*/
      |           ^~
pattern1.c: In function ‘align_of_pattern’:
pattern1.c:1562:19: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1562 |    local_score += ALIGN_B(querySeq-1, dbSeq-1, queryMatchOffset, dbMatchOffset,
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1563 |          BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF impatool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from impatool.c:73:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from impatool.c:73:
impatool.c: In function ‘IMPALAPrintHelp’:
../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
impatool.c:288:10: note: ‘ret_buffer’ was declared here
  288 |  CharPtr ret_buffer;
      |          ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF posit2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit2.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mbalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mbalign.h:4,
                 from mbalign.c:176:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF vecscrn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vecscrn.h:74,
                 from vecscrn.c:103:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $";
      |                   ^~~~~
vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’:
vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1078 |   while (tmp)
      |         ^
vecscrn.c: In function ‘VSPrintListFromSeqLocs’:
vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1188 |   while (tmp)
      |         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF mblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mblast.c:710:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mblast.c: In function ‘BioseqMegaBlastEngineCore’:
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
  961 |  stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
      |            ^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
  987 |  stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
      |            ^
mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable]
  942 |  SeqAlignPtr seqalign, PNTR seqalignp;
      |              ^~~~~~~~
mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’:
mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable]
 1167 |    Nlm_FloatHi avglen;
      |                ^~~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1829 |    SeqLocPtr slp;
      |              ^~~
mblast.c: In function ‘MegaBlastWordFinder_disc_1b’:
mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable]
 2372 |    register Int4 s_off, ecode, mask, q_off, extra_code;
      |                                ^~~~
At top level:
mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $";
      |                   ^~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1864 |         sap->next = seqalign_var;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~
mblast.c: In function ‘MegaBlastWordFinder_disc’:
mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2250 |                        (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                              ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2151 |          for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0;
      |                                               ^
mblast.c: In function ‘MegaBlastWordFinder’:
mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2620 |                         (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                               ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:17: note: ‘ecode2’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |                 ^~~~~~
mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2475 |                       (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
      |                                             ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:9: note: ‘ecode1’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |         ^~~~~~
mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’:
mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3504 |    SeqAlignPtr seqalign, seqalign_var, sap;
      |                ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF rpsutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rpsutil.c: In function ‘RPSBlastSearchLight’:
rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1838 |     Int2 status;
      |          ^~~~~~
rpsutil.c: In function ‘SaveUntilChar’:
rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 2190 |     if (ptr != NULLB)
      |             ^~
rpsutil.c:2190:9: note: did you mean to dereference the pointer?
 2190 |     if (ptr != NULLB)
      |         ^
rpsutil.c: In function ‘RPSBgetCddHits’:
rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable]
 2210 |   Boolean           found_score = FALSE;
      |                     ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘getAuxInformation’:
rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  398 |     fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  404 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_open);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  405 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_extend);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  406 |     fscanf(matrixAuxiliaryFile, "%le", &Kungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  407 |     fscanf(matrixAuxiliaryFile, "%le", &Hungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  408 |     fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  409 |     fscanf(matrixAuxiliaryFile, "%d", &dbLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  410 |     fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  415 |      fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  416 |      fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index]));
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
rpsutil.c: In function ‘RPSInitEx’:
rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  451 |     sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  452 |     sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  453 |     sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSAlignTraceBack’:
rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1444 |         search->sbp->posMatrix = posMatrix;
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |             seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1434 |                                             subject, subject_length,
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~
 1435 |                                             rev_subject, rev_subject_length);
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSCalcEValue’:
rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1269 |       search->sbp->posMatrix = posMatrix;
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
rpsutil.c: In function ‘RPSBgetCddHits’:
../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 | #define Nlm_StrCmp strcmp
      |                    ^~~~~~
rpsutil.c:2212:21: note: ‘dbname’ was declared here
 2212 |   CharPtr           dbname;
      |                     ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function ‘Kappa_SequenceGetProteinRange’:
kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable]
 1399 |   int i;
      |       ^
At top level:
kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF xmlblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/xmlblast.h:89,
                 from xmlblast.c:171:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
xmlblast.c: In function ‘PSIXmlInit’:
xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 1239 |     Boolean retval = FALSE;
      |             ^~~~~~
At top level:
xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’:
xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  373 |     CharPtr genetic_code1, genetic_code2;
      |                            ^~~~~~~~~~~~~
xmlblast.c: In function ‘BXMLSeqAlignToHits’:
xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  867 |                     if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                         is_ooframe, mask_loc)) == NULL)
      |                                         ~~~~~~~~~~~~~~~~~~~~~~
xmlblast.c: In function ‘SeqAlignToHits’:
xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1646 |             hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from bxmlobj.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bxmlobj.c: In function ‘BlastOutputAsnRead’:
bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   96 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘ParametersAsnRead’:
bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  361 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable]
  360 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘IterationAsnRead’:
bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘StatisticsAsnRead’:
bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  829 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable]
  828 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘HitAsnRead’:
bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1039 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘HspAsnRead’:
bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1244 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1243 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dotseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from ../include/dotseq.h:63,
                 from dotseq.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces]
   96 | static Int4  DOTblosum62[24][24] = {
      |                                    ^
   97 |   4, -1, -2, -2,  0, -1, -1,  0, -2, -1, -1, -1, -1, -2, -1,  1,  0, -3, -2,  0, -2, -1,  0, -4,
      |   {                                                                                            }
   98 |  -1,  5,  0, -2, -3,  1,  0, -2,  0, -3, -2,  2, -1, -3, -2, -1, -1, -3, -2, -3, -1,  0, -1, -4,
      |  {                                                                                             }
   99 |  -2,  0,  6,  1, -3,  0,  0,  0,  1, -3, -3,  0, -2, -3, -2,  1,  0, -4, -2, -3,  3,  0, -1, -4,
      |  {                                                                                             }
  100 |  -2, -2,  1,  6, -3,  0,  2, -1, -1, -3, -4, -1, -3, -3, -1,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  101 |   0, -3, -3, -3,  9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4,
      |   {                                                                                            }
  102 |  -1,  1,  0,  0, -3,  5,  2, -2,  0, -3, -2,  1,  0, -3, -1,  0, -1, -2, -1, -2,  0,  3, -1, -4,
      |  {                                                                                             }
  103 |  -1,  0,  0,  2, -4,  2,  5, -2,  0, -3, -3,  1, -2, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  104 |   0, -2,  0, -1, -3, -2, -2,  6, -2, -4, -4, -2, -3, -3, -2,  0, -2, -2, -3, -3, -1, -2, -1, -4,
      |   {                                                                                            }
  105 |  -2,  0,  1, -1, -3,  0,  0, -2,  8, -3, -3, -1, -2, -1, -2, -1, -2, -2,  2, -3,  0,  0, -1, -4,
      |  {                                                                                             }
  106 |  -1, -3, -3, -3, -1, -3, -3, -4, -3,  4,  2, -3,  1,  0, -3, -2, -1, -3, -1,  3, -3, -3, -1, -4,
      |  {                                                                                             }
  107 |  -1, -2, -3, -4, -1, -2, -3, -4, -3,  2,  4, -2,  2,  0, -3, -2, -1, -2, -1,  1, -4, -3, -1, -4,
      |  {                                                                                             }
  108 |  -1,  2,  0, -1, -3,  1,  1, -2, -1, -3, -2,  5, -1, -3, -1,  0, -1, -3, -2, -2,  0,  1, -1, -4,
      |  {                                                                                             }
  109 |  -1, -1, -2, -3, -1,  0, -2, -3, -2,  1,  2, -1,  5,  0, -2, -1, -1, -1, -1,  1, -3, -1, -1, -4,
      |  {                                                                                             }
  110 |  -2, -3, -3, -3, -2, -3, -3, -3, -1,  0,  0, -3,  0,  6, -4, -2, -2,  1,  3, -1, -3, -3, -1, -4,
      |  {                                                                                             }
  111 |  -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4,  7, -1, -1, -4, -3, -2, -2, -1, -2, -4,
      |  {                                                                                             }
  112 |   1, -1,  1,  0, -1,  0,  0,  0, -1, -2, -2,  0, -1, -2, -1,  4,  1, -3, -2, -2,  0,  0,  0, -4,
      |   {                                                                                            }
  113 |   0, -1,  0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1,  1,  5, -2, -2,  0, -1, -1,  0, -4,
      |   {                                                                                            }
  114 |  -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1,  1, -4, -3, -2, 11,  2, -3, -4, -3, -2, -4,
      |  {                                                                                             }
  115 |  -2, -2, -2, -3, -2, -1, -2, -3,  2, -1, -1, -2, -1,  3, -3, -2, -2,  2,  7, -1, -3, -2, -1, -4,
      |  {                                                                                             }
  116 |   0, -3, -3, -3, -1, -2, -2, -3, -3,  3,  1, -2,  1, -1, -2, -2,  0, -3, -1,  4, -3, -2, -1, -4,
      |   {                                                                                            }
  117 |  -2, -1,  3,  4, -3,  0,  1, -1,  0, -3, -4,  0, -3, -3, -2,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  118 |  -1,  0,  0,  1, -3,  3,  4, -2,  0, -3, -3,  1, -1, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  119 |   0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2,  0,  0, -2, -1, -1, -1, -1, -1, -4,
      |   {                                                                                            }
  120 |  -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4,  1
      |  {
  121 |  };
      |  }
dotseq.c: In function ‘DOT_BuildPLookup’:
dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable]
  887 |   Boolean         EXACTMATCH, found_ambig, saved_index = FALSE;
      |                               ^~~~~~~~~~~
dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable]
  885 |   Int4            threshold=13; /* one-hit heuristics T must be at least 13*/
      |                   ^~~~~~~~~
dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable]
  883 |   Int4            index = 0;
      |                   ^~~~~
dotseq.c: In function ‘DOT_ComputeHits’:
dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable]
 1043 |   Uint1Ptr                s, subject0, s_end, q_end;
      |                                               ^~~~~
dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable]
 1041 |   Boolean         saved_index = FALSE;
      |                   ^~~~~~~~~~~
dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable]
 1039 |   Int4            threshold=13;
      |                   ^~~~~~~~~
dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’:
dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2016 |    Uint1           strand;
      |                    ^~~~~~
dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2015 |    Int4            start2;
      |                    ^~~~~~
dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2014 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $";
      |                   ^~~~~
dotseq.c: In function ‘DOT_BuildHitList’:
dotseq.c:1286:9: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1286 |   while (i<index)
      |         ^
dotseq.c:1310:19: note: ‘index’ was declared here
 1310 |   Int4            index;
      |                   ^~~~~
dotseq.c:1309:19: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |   DOTDiagPtr PNTR hitlist;
      |                   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF spidey.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/spidey.h:102,
                 from spidey.c:263:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
spidey.c: In function ‘SPI_PrintResult’:
spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1740 |    Int4             offset;
      |                     ^~~~~~
spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’:
spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
 2854 |    if (spot->from == spot->to == 0)
      |        ~~~~~~~~~~~^~~~~~~~~~~
spidey.c: In function ‘SPI_FillInLastmRNAHoles’:
spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable]
 6299 |    Boolean          internal;
      |                     ^~~~~~~~
spidey.c: In function ‘SPI_FindBestAlnByDotPlot’:
spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 6445 |    Uint1           strand;
      |                    ^~~~~~
spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 6444 |    Int4            start2;
      |                    ^~~~~~
spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 6443 |    Int4            start1;
      |                    ^~~~~~
spidey.c: In function ‘SPI_ConnectAlnPieces’:
spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable]
 7814 |    SPI_FragPtr          PNTR tmparray;
      |                              ^~~~~~~~
spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable]
 7800 |    SPI_FragPtr          sfpprev;
      |                         ^~~~~~~
spidey.c: In function ‘SPI_AdjustSplicesInPieces’:
spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable]
 8448 |    Boolean            minus;
      |                       ^~~~~
spidey.c: In function ‘SPI_CheckMrnaOrder’:
spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10296 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10300 |                     || (ival->strand == Seq_strand_minus == ival2->strand
spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10313 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10315 |                     || (ival->strand == Seq_strand_plus == ival2->strand
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spidey.c:263:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF motif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/motif.h:45,
                 from motif.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
motif.c: In function ‘MOT_FindPolyA’:
motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
   86 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
motif.c: In function ‘MOT_FindKozak’:
motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
  216 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/motif.h:48,
                 from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blfmtutl.c:175:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blfmtutl.c: In function ‘CBStatisticsGetReference’:
blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  593 |  } else
      |    ^~~~
blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  595 |    add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1281 |                for (index=1; ssp->next; index++)
      |                ^~~
blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1283 |                    num_gap_opens = index / 2;
      |                    ^~~~~~~~~~~~~
At top level:
blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $";
      |                   ^~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1117 |          if (--alignments_count < 0)
      |             ^
blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1353 |             s_end += s_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1352 |             s_start += s_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1351 |             q_end += q_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1350 |             q_start += q_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1081 |          while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES)
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastSetUserErrorString’:
blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1413 |  CharPtr buf_start, ptr, title;
      |                          ^~~~~
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF compo_heap.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontg.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontmb.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pictogif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from pictogif.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfontl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontl.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gdfonts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfonts.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -DWIN_GIF -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidrwg.c: In function ‘Nlm_ClearRgn’:
ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6081 |   Nlm_RgnTool  ntool;
      |                ^~~~~
ncbidrwg.c: In function ‘Nlm_DiffRgn’:
ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6273 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6272 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6271 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_XorRgn’:
ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6324 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6323 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6322 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EqualRgn’:
ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6353 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6352 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EmptyRgn’:
ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6381 |   Nlm_RgnTool   ntool;
      |                 ^~~~~
ncbidrwg.c: In function ‘Nlm_CopyPixmap’:
ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 7040 |   Nlm_Int2              height;
      |                         ^~~~~~
ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 7039 |   Nlm_Int2              width;
      |                         ^~~~~
ncbidrwg.c: In function ‘Nlm_GetColorRGB’:
ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1373 |   return (Nlm_Uint4)i;
      |          ^~~~~~~~~~~~
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF algorend.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/viewer3d.h:125,
                 from algorend.c:584:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘RenderObject’:
algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                         ^~~~
algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                   ^~~~
algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |             ^~~~
algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                             ^~~~~~
algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                     ^~~~~~
algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |             ^~~~~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3757 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
algorend.c: In function ‘Do3DOrigin’:
algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 5756 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable]
 5751 |     FloatLo fTo[3];
      |             ^~~
algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable]
 5750 |     FloatLo fFrom[3];
      |             ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderLabel’:
../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:10: note: ‘iX’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |          ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:14: note: ‘iY’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |              ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:18: note: ‘iZ’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3449:22: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c:3442:22: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3442 |         fXt = (fXCen - fXFrom) + (fXCen - fXTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc.isra.0’:
algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1316 |             pars->SolventRender = k;
      |             ~~~~~~~~~~~~~~~~~~~~^~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderObject’:
../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:10: note: ‘iXFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:18: note: ‘iYFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:26: note: ‘iZFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:10: note: ‘iXTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:16: note: ‘iYTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:22: note: ‘iZTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘Do3DOrigin’:
../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:10: note: ‘iXFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:18: note: ‘iYFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:26: note: ‘iZFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:10: note: ‘iXTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:16: note: ‘iYTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:22: note: ‘iZTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet.isra.0’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Viewer3DViewer’:
cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1784 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3D_Menus’:
cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2131 |           (Nlm_VoidPtr) i, NULL);
      |           ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/shim3d.h:153,
                 from algorend.c:582:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘Cn3D_SetOGLFont’:
algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘MasterChangeLabelsProc’:
algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable]
 2075 |     Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
      |                                            ^~~~~
algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable]
 2073 |     Int2 i, k, nameval;
      |             ^
algorend.c: In function ‘ResetLabelCtrls’:
algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 2272 |     Int2 i, val, style, size, termStyle;
      |                         ^~~~
algorend.c: In function ‘LabelControls’:
algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable]
 2434 |     PrompT ppt10, ppt11;
      |                   ^~~~~
algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable]
 2431 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
      |                                    ^~~~
algorend.c: In function ‘Cn3D_SetQualityFromAppParams’:
algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable]
 2649 |     int i;
      |         ^
algorend.c: In function ‘OGL_Quality’:
algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                       ^
algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                    ^
algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                ^~
algorend.c: In function ‘RenderControls’:
algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 2893 |     PrompT ppt5;
      |            ^~~~
algorend.c: In function ‘RenderObject’:
algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable]
 3138 |     Int4 iCylRadius;
      |          ^~~~~~~~~~
algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable]
 3133 |     Int4 i = 0;
      |          ^
algorend.c: In function ‘RenderLabel’:
algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable]
 3394 |     PALD paldPrim = NULL;
      |          ^~~~~~~~
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |              ^~
algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |          ^~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc’:
algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1295 |             pars->PBBRender = k;
      |             ~~~~~~~~~~~~~~~~^~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3449:22: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c:3450:58: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                                   ~~~~~~~^~~~~~~~~
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_AddMatrix’:
cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable]
  206 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
      |                                         ^~~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet.isra.0’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Cn3D_Default_HLColor’:
cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                           ^~~~~~
cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                   ^~~~~~
cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |           ^~~~~~
cn3dwin.c: In function ‘Cn3D_RedrawEx’:
cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable]
 1251 |     DDV_ColorCell iColor;
      |                   ^~~~~~
cn3dwin.c: In function ‘fnPreCHLresidue’:
cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1543 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3D_Menus’:
cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2131 |           (Nlm_VoidPtr) i, NULL);
      |           ^
cn3dwin.c: In function ‘Cn3DWin’:
cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration]
 2364 |     Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
      |     ^~~~~~~~~~~~~~~~~
      |     Nlm_InitAppContext
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function]
 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
      |                         ^~~~~~~~~~~~~~
cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function]
  979 | static void Cn3D_Default_HLColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function]
  953 | static void Cn3D_BgColor(IteM i)
      |             ^~~~~~~~~~~~
cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function]
  936 | static void Cn3D_Default_BgColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable]
  719 | static GrouP Cn3D_gViewCtrl;
      |              ^~~~~~~~~~~~~~
cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable]
  713 | static GrouP Cn3D_gViewer;
      |              ^~~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable]
  676 | static Uint2 Cn3D_Vy, Cn3D_Rx;
      |              ^~~~~~~
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dshim.c: In function ‘Cn3D_Size’:
cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  413 |     PMSD pmsdThis;
      |          ^~~~~~~~
cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
  412 |     PDNMS pdnmsSlave;
      |           ^~~~~~~~~~
cn3dshim.c: In function ‘Cn3D_SizeCB’:
cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations]
  399 |                         BoundBox->x[i + 1]) BoundBox->x[i + 1] =
      |                         ~~~~~~~~~~~^~~~~~~
cn3dshim.c:395:17: note: within this loop
  395 |                 for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
      |                 ^~~
cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
  391 |                     BoundBox->x[i] = pflvDataThis[i / (int) 2];
      |                     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dshim.c:390:17: note: within this loop
  390 |                 for (i = 0; i < 6; i++) {
      |                 ^~~
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable]
  867 |         FALSE, TopOn = FALSE;
      |                ^~~~~
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable]
  864 |     Int2 i = 0, k = 0, nameval = 0;
      |                 ^
cn3dstyl.c: In function ‘ModelSetLabelCtrls’:
cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 1059 |     Int2 i = 0, val = 0, style = 0, size = 0;
      |                                     ^~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable]
 1363 |         ppt11;
      |         ^~~~~
cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                                            ^~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_engine.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_extend.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_filter.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hits.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_itree.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seg.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_sw.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_setup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_stat.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’:
blast_traceback.c:1500: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \
      | 
blast_traceback.c:1524: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1524 | #pragma omp critical(retval)
      | 
blast_traceback.c:1530: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 1530 | #pragma omp flush(has_been_interrupted)
      | 
blast_traceback.c:1561: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1561 | #pragma omp critical(tback_gen_code)
      | 
blast_traceback.c:1591: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1591 | #pragma omp critical(retval)
      | 
blast_traceback.c:1631: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1631 | #pragma omp critical(tback_gen_code)
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_util.c
blast_util.c: In function ‘BlastProgram2Number’:
blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  306 |     else if (strcasecmp("mapper", program) == 0)
      |          ^~
blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  309 |  return 0;
      |  ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gapinfo.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF greedy_align.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF link_hsps.c
link_hsps.c: In function ‘s_FwdCompareHSPs’:
link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  133 |     else if (h1->context > h2->context)
      |          ^~
link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  136 |  if (h1->query.offset < h2->query.offset)
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF pattern.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_extend.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF lookup_util.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’:
blast_kappa.c:3407: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 3407 | #pragma omp parallel \
      | 
blast_kappa.c:3426: warning: ignoring #pragma omp for [-Wunknown-pragmas]
 3426 | #pragma omp for schedule(static)
      | 
blast_kappa.c:3428: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3428 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3489: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3489 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3491: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3491 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3504: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3504 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3506: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3506 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3722: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3722 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3724: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3724 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3730: warning: ignoring #pragma omp barrier [-Wunknown-pragmas]
 3730 | #pragma omp barrier
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_posit.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_program.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tune.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’:
blast_nalookup.c:1850: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \
      | 
blast_nalookup.c:1858: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1858 | #pragma omp critical (get_sequence_for_word_counts)
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF split_query.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF boost_erf.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF jumper.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:149:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  149 |    fscanf(auxfile, "%s", buffer);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:151:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  151 |    fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:152:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  152 |    fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:153:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  153 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_k);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:154:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  154 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_h);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:155:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  155 |    fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:156:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  156 |    fscanf(auxfile, "%d", &info->aux_info.db_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:157:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  157 |    fscanf(auxfile, "%lf", &info->aux_info.scale_factor);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:161:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  161 |       fscanf(auxfile, "%d", &seq_size); /* not used */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:162:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  162 |       fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  104 |    sprintf(filename, "%s.loo", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  123 |    sprintf(filename, "%s.rps", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  144 |    sprintf(filename, "%s.aux", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastFindMatrixPath’:
blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  502 |                  sprintf(buf_full, "%s%s%s%s", buf_path,
      |                                       ^~
  503 |                           alphabet_type, DIRDELIMSTR, matrix_name);
      |                           ~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
  484 |          sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR);
      |                                   ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  470 |          sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR);
      |                                   ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_input.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $";
      |                   ^~~~~
blast_input.c: In function ‘BLAST_GetQuerySeqLoc’:
blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                     ^~~
blast_input.c:98:20: note: directive argument in the range [-131080, 131080]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                    ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_format.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_format.h:45,
                 from blast_format.c:38:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_format.c: In function ‘s_MBXmlInit’:
blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
  255 |     Boolean retval = FALSE;
      |             ^~~~~~
blast_format.c: In function ‘s_LoadMatrix’:
blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                     ~~~~~~^~~
blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                                ~~~~~~^~~
At top level:
blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from blast_mtlock.c:39:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] =
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’:
blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  100 |    Int2 status = 0;
      |         ^~~~~~
At top level:
blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_returns.c
blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from blast_seq.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’:
blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable]
  529 |    Uint1 seq_code, strand;
      |          ^~~~~~~~
At top level:
blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/blast_seqalign.h:42,
                 from blast_seqalign.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’:
blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable]
  343 |    Int4 hsp_cnt, index2, hspset_cnt_old;
      |                          ^~~~~~~~~~~~~~
At top level:
blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from blast_tabular.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/repeats_filter.h:41,
                 from repeats_filter.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/seqsrc_readdb.h:38,
                 from seqsrc_readdb.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’:
seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable]
  375 |     Uint4 real_readdb_entries;
      |           ^~~~~~~~~~~~~~~~~~~
At top level:
seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’:
twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable]
  100 |     Int2 status = 0;
      |          ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/algo/blast/api/twoseq_api.h:41,
                 from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF dust_filter.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/dust_filter.h:41,
                 from dust_filter.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust_filter.c: In function ‘s_GetFilteringLocations’:
dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable]
  171 |                   BlastSeqLoc* filter_slp_rev = NULL;
      |                                ^~~~~~~~~~~~~~
At top level:
dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_message_api.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from hspfilter_queue.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’:
hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable]
   65 |    BlastHSPQueueData * q_data = data;
      |                        ^~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’:
hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ {aka ‘int (*)(void *, struct BlastHSPResults *)’} [-Wincompatible-pointer-types]
  157 |    writer->InitFnPtr   = &s_BlastHSPQueueInit;
      |                        ^
hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ {aka ‘int (*)(void *, struct BlastHSPResults *)’} [-Wincompatible-pointer-types]
  158 |    writer->FinalFnPtr  = &s_BlastHSPQueueFinal;
      |                        ^
hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’:
hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘struct BlastHSPWriter * (*)(void *, struct BlastQueryInfo *, struct BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ {aka ‘struct BlastHSPWriter * (*)(void *, struct BlastQueryInfo *)’} [-Wincompatible-pointer-types]
  189 |    writer_info->NewFnPtr = &s_BlastHSPQueueNew;
      |                          ^
At top level:
hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   36 | static char const rcsid[] =
      |                   ^~~~~
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
s390x-linux-gnu-gcc -o asntool -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntool.c:64:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asncode.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asncode.c: In function ‘AsnCodeGenEnumDefines’:
asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
  736 |   sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf,
      |                           ~^
      |                            |
      |                            int
      |                           %ld
  737 |     CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue);
      |                                                       ~~~~~~~~~~~~~~
      |                                                           |
      |                                                           Nlm_Int8 {aka long int}
asncode.c: In function ‘AsnCode_SETOF_base_or_user’:
asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable]
 1518 |    Int2            real_type;
      |                    ^~~~~~~~~
asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 1517 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘userobj_and_basetype_SETOF’:
asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 2472 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIsReallyChoice’:
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 3201 |    if (now_atp)
      |       ^
asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’:
asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable]
 3623 |    CharPtr         obj_use = which_node->obj_name;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIter’:
asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 4238 |    if (iter->atp != NULL)
      |       ^
asncode.c: In function ‘AsnCode’:
asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable]
 4317 |    CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
      |                                                ^~~~~~~~~
At top level:
asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable]
  291 | static CharPtr  defbyte = "ASNCODE_BYTEVAL_SLOT";
      |                 ^~~~~~~
asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable]
  290 | static CharPtr  defbool = "ASNCODE_BOOLVAL_SLOT";
      |                 ^~~~~~~
asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable]
  289 | static CharPtr  defreal = "ASNCODE_REALVAL_SLOT";
      |                 ^~~~~~~
asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable]
  288 | static CharPtr  defbigint = "ASNCODE_BIGINTVAL_SLOT";
      |                 ^~~~~~~~~
asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable]
  286 | static CharPtr  defptr = "ASNCODE_PTRVAL_SLOT";
      |                 ^~~~~~
/usr/lib/gcc-cross/s390x-linux-gnu/9/../../../../s390x-linux-gnu/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
cp -p asntool ../bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC" \
    LDFLAGS="-Wl,-z,relro -Wl,-z,now" \
    NETENTREZVERSION="2.02c2ASN1SPEC6" \
    BLIB31=libvibnet.a OGLLIBS="-lGLU -lGL -lpng " all libncbimla.a libnetblast.a libncbitxc2.a libncbiid1.a shlib
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [makenet.unx:480: copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [makenet.unx:481: copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [makenet.unx:486: copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [makenet.unx:487: copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [makenet.unx:500: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [makenet.unx:501: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [makenet.unx:502: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [makenet.unx:503: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [makenet.unx:504: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [makenet.unx:505: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [makenet.unx:506: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [makenet.unx:507: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [makenet.unx:508: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [makenet.unx:509: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [makenet.unx:510: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [makenet.unx:511: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [makenet.unx:512: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [makenet.unx:513: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [makenet.unx:514: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [makenet.unx:515: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [makenet.unx:516: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [makenet.unx:517: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [makenet.unx:518: copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/export_cmt.c .
./ln-if-absent ../internal/parser/flat2asn.c .
make[2]: [makenet.unx:577: copy] Error 1 (ignored)
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [makenet.unx:579: copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ni_lib_.c:76:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_debug.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_service.c:125:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ni_service.c: In function ‘s_GenericGetService’:
ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable]
  201 |     CONNECTOR     c;
      |                   ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ../include/ni_error.h:76,
                 from ni_error.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from netentr.c:161:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netentr.c: In function ‘s_NetEntTLEvalCount’:
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
  798 |     /*MsgSetReadTimeout(Entrez_ni, 60);*/
      |      
netentr.c: In function ‘s_NetDocSumListGet’:
netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable]
  856 |     AsnModulePtr amp;
      |                  ^~~
netentr.c: In function ‘s_NetTermListByTerm’:
netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable]
 1212 |     int terms_to_read;
      |         ^~~~~~~~~~~~~
netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1200 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘s_NetTermListByPage’:
netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1343 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘NetEntTLEval’:
netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  675 |     return lsp;
      |            ^~~
netentr.c: In function ‘NetEntTLEvalCount’:
netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  800 |     if (atp == ENTREZ_BACK_eval_count)
      |        ^
netentr.c:782:16: note: ‘atp’ was declared here
  782 |     AsnTypePtr atp;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from netlib.c:82:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netlib.c: In function ‘BoolExprAsnWrite’:
netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable]
  307 |     static int n = 0;
      |                ^
At top level:
netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable]
netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable]
   96 | static Boolean loaded = FALSE;
      |                ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnneten.h:9,
                 from objneten.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objneten.c: In function ‘NetEntAsnLoad’:
objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  106 |     if (loaded)
      |     ^~
objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  108 |         loaded = TRUE;
      |         ^~~~~~
objneten.c: In function ‘EntrezNeighborTextAsnRead’:
objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2938 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘ChildLinkAsnRead’:
objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3148 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘EntrezHierarchyAsnRead’:
objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3442 |   AsnReadFunc func;
      |               ^~~~
objneten.c: In function ‘EntrezBlastreqAsnRead’:
objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3705 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘EntrezExtraInfoAsnRead’:
objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3911 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterArticlesAsnRead’:
objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4262 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4261 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterRespAsnRead’:
objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4455 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateConstraintsAsnRead’:
objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4622 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateVectorAsnRead’:
objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4785 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4784 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetByFidAsnRead’:
objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4963 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetFeatIdsAsnRead’:
objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5133 |    AsnReadFunc func;
      |                ^~~~
objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5132 |    Boolean isError = FALSE;
      |            ^~~~~~~
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Naccentr.c: In function ‘EntrezDocSumListGet’:
Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Naccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
Naccentr.c: In function ‘EntrezMedlineEntryGet’:
Naccentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Naccentr.c: In function ‘EntrezSeqEntryGet’:
Naccentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Caccentr.c: In function ‘EntrezDocSumListGet’:
Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Caccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
Caccentr.c: In function ‘EntrezMedlineEntryGet’:
Caccentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Caccentr.c: In function ‘EntrezSeqEntryGet’:
Caccentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netcnfg.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netcnfg.c: In function ‘ShowNetConfigForm’:
netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
  319 |   PrompT        ppt0, ppt1;
      |                       ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from trmlst.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trmlst.c: In function ‘FetchFromTermList’:
trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable]
 1048 |   Int2         numRead;
      |                ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
docsum.c: In function ‘ImportDocSumForm’:
docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable]
 2298 |   SeqEntryPtr       sephead = NULL;
      |                     ^~~~~~~
docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable]
 2296 |   Boolean           is_na = TRUE;
      |                     ^~~~~
docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable]
 2290 |   Uint1             choice = 0;
      |                     ^~~~~~
docsum.c: In function ‘SaveDocsumProject’:
docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3042 |   SummFormPtr  sfp;
      |                ^~~
docsum.c: In function ‘LaunchStructureViewer’:
docsum.c:4192:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4192 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable]
  439 | static Uint1  checkmark [] = {
      |               ^~~~~~~~~
docsum.c: In function ‘SetDefaultFailureMessage’:
docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=]
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                                                ^~~~
docsum.c:687:21: note: assuming directive output of 3 bytes
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
docsum.c: In function ‘FetchLocalBioseq’:
docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1223 |   if (str == NULL) return failed;
      |      ^
docsum.c: In function ‘LaunchStructureViewer.isra.0’:
docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 4191 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla.c: In function ‘MlaRequestFree’:
objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgAsnRead’:
objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgListAsnRead’:
objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  612 |    AsnReadFunc func;
      |                ^~~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla.c: In function ‘MlaBackAsnRead’:
objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  902 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function]
  758 | /*FCN*/s_MedArchPubSetEntryGetUid (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function]
  710 | /*FCN*/s_MedArchPubSetEntryGetPmId (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c: In function ‘MedArchPubSetCreate’:
medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1693 |         MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ni_types.h:85,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
      |                           ^~~~~~~~~~~~~~
medarch.c:1625:16: note: ‘pubSetAtp’ was declared here
 1625 |     AsnTypePtr pubSetAtp;
      |                ^~~~~~~~~
medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1655 |     AsnWrite (aip, startAtp, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/medutil.h:79,
                 from medutil.c:58:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medutil.c: In function ‘FixPubEquiv’:
medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable]
 1134 |     Boolean    got;
      |                ^~~
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objblst3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblst3.c: In function ‘BlastSearchAsnRead’:
objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   91 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastRequestFree’:
objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  287 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable]
  337 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff2_cutoff2Free’:
objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  999 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’:
objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1422 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffAsnRead’:
objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffFree’:
objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1871 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastMatrixAsnRead’:
objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1936 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoAsnRead’:
objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2153 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2152 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastMaskAsnRead’:
objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2357 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastKABlkAsnRead’:
objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2517 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2516 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastErrorAsnRead’:
objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2697 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2696 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPhialignAsnRead’:
objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2861 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoGetAsnRead’:
objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3022 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3021 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSeqIdAsnRead’:
objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3187 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3186 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSequenceAsnRead’:
objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3364 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3363 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPartsAsnRead’:
objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3532 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastQueuedAsnRead’:
objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3694 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3693 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastProgressAsnRead’:
objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3846 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3845 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastDeflineAsnRead’:
objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4000 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3999 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastVersionAsnRead’:
objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4168 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4167 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastHitAsnRead’:
objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4335 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4334 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastResultsAsnRead’:
objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4546 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  430 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastResponseAsnRead’:
objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  791 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1474 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1421:10: note: ‘choice’ was declared here
 1421 |    Uint1 choice;
      |          ^~~~~~
objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1840 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1787:10: note: ‘choice’ was declared here
 1787 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from netblap3.c:359:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netblap3.c: In function ‘BlastNetBioseqFetchFunc’:
netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 1835 |  OMUserDataPtr omdp;
      |                ^~~~
netblap3.c: In function ‘MegaBlastSeqLocNetCore’:
netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2049 |  Uint2 entityID = 0;
      |        ^~~~~~~~
In file included from ../include/netblap3.h:135,
                 from netblap3.c:364:
netblap3.c: At top level:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function]
  452 | BlastResetOldHook(void)
      | ^~~~~~~~~~~~~~~~~
netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function]
  445 | BlastGetErrorStatus(void)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function]
  438 | BlastSetErrorStatus(Boolean status)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function]
  430 | BlastSetErrorHook(void)
      | ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from netblap3.c:364:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’:
netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1212 |  if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netblap3.c: In function ‘SubmitRequest’:
netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1763 |     bllist->next = blresp;
      |     ~~~~~~~~~~~~~^~~~~~~~
netblap3.c:1698:19: note: ‘bllist’ was declared here
 1698 |  BlastResponsePtr bllist, blresp, head;
      |                   ^~~~~~
netblap3.c: In function ‘TraditionalBlastReportEngine’:
netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2570 |     while (seqalign) {
      |           ^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax1.c: In function ‘Taxon1ReqFree’:
objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable]
   92 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1InfoAsnRead’:
objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  502 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable]
  501 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1ErrorAsnRead’:
objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1131 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1130 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1NameAsnRead’:
objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1296 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1295 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1DataAsnRead’:
objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1482 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon2DataAsnRead’:
objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax1.c: In function ‘Taxon1RespAsnRead’:
objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/utilpub.h:4,
                 from taxutil.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxutil.c: In function ‘taxname_match’:
taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable]
   66 |    CharPtr             taxstr = NULL;
      |                        ^~~~~~
taxutil.c: In function ‘get_lineage’:
taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return Nlm_StringSave(onp->lineage);
      |                         ~~~^~~~~~~~~
taxutil.c: In function ‘get_gcode’:
taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  160 |    gclp->genomic = onp->gcode;
      |                    ~~~^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function ‘getIdByOrgRef’:
tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable]
  407 |         Boolean om_flag= FALSE;
      |                 ^~~~~~~
tc2proc.c: In function ‘bldLineage’:
tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable]
 1095 |     Int2 rank= 0;
      |          ^~~~
tc2proc.c: In function ‘storedTaxId’:
tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable]
 2114 |     ObjectIdPtr object_id;
      |                 ^~~~~~~~~
tc2proc.c: In function ‘tax1e_needUpdate’:
tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable]
 2181 |     CharPtr hit_name;
      |             ^~~~~~~~
tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable]
 2180 |     Boolean need_search_name= TRUE;
      |             ^~~~~~~~~~~~~~~~
tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable]
 2179 |     int is_species;
      |         ^~~~~~~~~~
tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable]
 2176 |     Taxon1DataPtr res;
      |                   ^~~
At top level:
tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function]
  403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
      |             ^~~~~~~~~~~~~
tc2proc.c: In function ‘mergeOrgMod’:
tc2proc.c:1611:22: warning: ‘lst’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |             lst->next= dst= OrgModNew();
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from txcdproc.c:116:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/txclient.h:73,
                 from parttree.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
parttree.c: In function ‘tax_ptree_addSubtree’:
parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable]
  392 |     Boolean need_remove= FALSE;
      |             ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast.c: In function ‘TXBHtmlReportInternal’:
taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable]
 1359 |     Int2 numtaxa, numorgs, numhits, linlines, longname;
      |                                     ^~~~~~~~
taxblast.c: In function ‘RDTaxLookupReset’:
taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type]
 2050 | }
      | ^
At top level:
taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function]
 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
      |             ^~~~~~~~~~~~~~~~~~
taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $";
      |                   ^~~~~
taxblast.c: In function ‘TXBGetTargetGi.isra.0’:
taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     return gi;
      |            ^~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
In function ‘strncpy’,
    inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17,
    inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from id1gen.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1gen.c: In function ‘ID1serverRequestFree’:
id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’:
id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  348 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable]
  347 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqHistAsnRead’:
id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  530 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable]
  529 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’:
id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  979 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable]
  978 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1blobInfoAsnRead’:
id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1146 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverDebugAsnRead’:
id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1368 |    AsnReadFunc func;
      |                ^~~~
id1gen.c: In function ‘ID1serverBackAsnRead’:
id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  811 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1arch.c: In function ‘ID1ArchSeqEntryGet’:
id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable]
  173 |  Int4 retval = 0;
      |       ^~~~~~
id1arch.c: In function ‘ID1ArchGIGet’:
id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable]
  486 |     Int4 retval = 0;
      |          ^~~~~~
id1arch.c: In function ‘SeqHistPrintTable’:
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
  553 |                                         sprintf(repl_date,"%0.2d/%0.2d/%0.4d",
      |                                                           ^~~~~~~~~~~~~~~~~~~
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=]
  563 |                         fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
      |                                               ^
id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  558 |                                         sprintf(repl_date,"%-20s",shp->replace_date->str);
      |                                                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -fPIC -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from accid1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accid1.c: In function ‘s_ID1BioseqFetchFunc’:
accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable]
  262 |  Int2   retcode=0;
      |         ^~~~~~~
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
mkdir ../shlib
rm -f ../shlib/*.a
ln ../lib/*.a ../shlib
cd ../shlib; make -f ../make/makeshlb.unx `ls *.a | sed "s/\.a/.so.6/"` SH1="s390x-linux-gnu-gcc -o" SH2="-shared *.o"
make[3]: Entering directory '/<<PKGBUILDDIR>>/shlib'
s390x-linux-gnu-gcc -shared -Wl,-soname=libblastcompadj.so.6 -o libblastcompadj.so.6.1.20170106 \
    -Wl,--whole-archive libblastcompadj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
     -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbi.so.6 -o libncbi.so.6.1.20170106 \
    -Wl,--whole-archive libncbi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
     -lm
/usr/lib/gcc-cross/s390x-linux-gnu/9/../../../../s390x-linux-gnu/bin/ld: libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
s390x-linux-gnu-gcc -shared -Wl,-soname=libblast.so.6 -o libblast.so.6.1.20170106 \
    -Wl,--whole-archive libblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastcompadj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libblast.so.6.1.20170106 libblast.so.6
ln -s libblast.so.6.1.20170106 libblast.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbiobj.so.6 -o libncbiobj.so.6.1.20170106 \
    -Wl,--whole-archive libncbiobj.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbitool.so.6 -o libncbitool.so.6.1.20170106 \
    -Wl,--whole-archive libncbitool.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastcompadj.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libblastapi.so.6 -o libblastapi.so.6.1.20170106 \
    -Wl,--whole-archive libblastapi.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblast.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libblastapi.so.6.1.20170106 libblastapi.so.6
ln -s libblastapi.so.6.1.20170106 libblastapi.so
ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so.6
ln -s libblastcompadj.so.6.1.20170106 libblastcompadj.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libconnssl.so.6 -o libconnssl.so.6.1.20170106 \
    -Wl,--whole-archive libconnssl.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lgnutls
ln -s libconnssl.so.6.1.20170106 libconnssl.so.6
ln -s libconnssl.so.6.1.20170106 libconnssl.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libnetcli.so.6 -o libnetcli.so.6.1.20170106 \
    -Wl,--whole-archive libnetcli.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbiid1.so.6 -o libncbiid1.so.6.1.20170106 \
    -Wl,--whole-archive libncbiid1.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbimmdb.so.6 -o libncbimmdb.so.6.1.20170106 \
    -Wl,--whole-archive libncbimmdb.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiid1.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libvibrantOGL.so.6 -o libvibrantOGL.so.6.1.20170106 \
    -Wl,--whole-archive libvibrantOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lGLU -lGL -lpng  -lXm -lXmu -lXt -lX11  -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbidesk.so.6 -o libncbidesk.so.6.1.20170106 \
    -Wl,--whole-archive libncbidesk.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libblastapi.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
s390x-linux-gnu-gcc -shared -Wl,-soname=libddvlib.so.6 -o libddvlib.so.6.1.20170106 \
    -Wl,--whole-archive libddvlib.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbidesk.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libddvlib.so.6.1.20170106 libddvlib.so.6
ln -s libddvlib.so.6.1.20170106 libddvlib.so
ln -s libncbi.so.6.1.20170106 libncbi.so.6
ln -s libncbi.so.6.1.20170106 libncbi.so
ln -s libncbiNacc.so.6.1.20170106 libncbiCacc.so.6.1.20170106
ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so.6
ln -s libncbiCacc.so.6.1.20170106 libncbiCacc.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbicdr.so.6 -o libncbicdr.so.6.1.20170106 \
    -Wl,--whole-archive libncbicdr.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbiNacc.so.6 -o libncbiNacc.so.6.1.20170106 \
    -Wl,--whole-archive libncbiNacc.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbicdr.so.6.1.20170106 libnetentr.a libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so.6
ln -s libncbiNacc.so.6.1.20170106 libncbiNacc.so
ln -s libncbiNacc.so.6.1.20170106 libncbiacc.so.6.1.20170106
ln -s libncbiacc.so.6.1.20170106 libncbiacc.so.6
ln -s libncbiacc.so.6.1.20170106 libncbiacc.so
ln -s libncbicdr.so.6.1.20170106 libncbicdr.so.6
ln -s libncbicdr.so.6.1.20170106 libncbicdr.so
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3d.so.6.1.20170106
ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so.6
ln -s libncbicn3d.so.6.1.20170106 libncbicn3d.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbicn3dOGL.so.6 -o libncbicn3dOGL.so.6.1.20170106 \
    -Wl,--whole-archive libncbicn3dOGL.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiNacc.so.6.1.20170106 libddvlib.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 -lm
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so.6
ln -s libncbicn3dOGL.so.6.1.20170106 libncbicn3dOGL.so
ln -s libncbidesk.so.6.1.20170106 libncbidesk.so.6
ln -s libncbidesk.so.6.1.20170106 libncbidesk.so
ln -s libncbiid1.so.6.1.20170106 libncbiid1.so.6
ln -s libncbiid1.so.6.1.20170106 libncbiid1.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbimla.so.6 -o libncbimla.so.6.1.20170106 \
    -Wl,--whole-archive libncbimla.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiobj.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libncbimla.so.6.1.20170106 libncbimla.so.6
ln -s libncbimla.so.6.1.20170106 libncbimla.so
ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so.6
ln -s libncbimmdb.so.6.1.20170106 libncbimmdb.so
ln -s libncbiobj.so.6.1.20170106 libncbiobj.so.6
ln -s libncbiobj.so.6.1.20170106 libncbiobj.so
ln -s libncbitool.so.6.1.20170106 libncbitool.so.6
ln -s libncbitool.so.6.1.20170106 libncbitool.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libncbitxc2.so.6 -o libncbitxc2.so.6.1.20170106 \
    -Wl,--whole-archive libncbitxc2.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 -lm
ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so.6
ln -s libncbitxc2.so.6.1.20170106 libncbitxc2.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libnetblast.so.6 -o libnetblast.so.6.1.20170106 \
    -Wl,--whole-archive libnetblast.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbitool.so.6.1.20170106 libnetcli.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libnetblast.so.6.1.20170106 libnetblast.so.6
ln -s libnetblast.so.6.1.20170106 libnetblast.so
ln -s libnetcli.so.6.1.20170106 libnetcli.so.6
ln -s libnetcli.so.6.1.20170106 libnetcli.so
ln -s libncbiNacc.so.6.1.20170106 libnetentr.so.6.1.20170106
ln -s libnetentr.so.6.1.20170106 libnetentr.so.6
ln -s libnetentr.so.6.1.20170106 libnetentr.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libvibgif.so.6 -o libvibgif.so.6.1.20170106 \
    -Wl,--whole-archive libvibgif.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbi.so.6.1.20170106 -lm
ln -s libvibgif.so.6.1.20170106 libvibgif.so.6
ln -s libvibgif.so.6.1.20170106 libvibgif.so
s390x-linux-gnu-gcc -shared -Wl,-soname=libvibnet.so.6 -o libvibnet.so.6.1.20170106 \
    -Wl,--whole-archive libvibnet.a -Wl,--no-whole-archive -Wl,-z,relro -Wl,-z,now \
    libncbiNacc.so.6.1.20170106 libncbidesk.so.6.1.20170106 libncbimmdb.so.6.1.20170106 libvibrantOGL.so.6.1.20170106 libncbitool.so.6.1.20170106 libncbicdr.so.6.1.20170106 libncbiobj.so.6.1.20170106 libncbi.so.6.1.20170106 
ln -s libvibnet.so.6.1.20170106 libvibnet.so.6
ln -s libvibnet.so.6.1.20170106 libvibnet.so
ln -s libvibrantOGL.so.6.1.20170106 libvibrant.so.6.1.20170106
ln -s libvibrant.so.6.1.20170106 libvibrant.so.6
ln -s libvibrant.so.6.1.20170106 libvibrant.so
ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so.6
ln -s libvibrantOGL.so.6.1.20170106 libvibrantOGL.so
make[3]: Leaving directory '/<<PKGBUILDDIR>>/shlib'
rm -f ../shlib/*.a
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build clean
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
rm -f *.[acho] *.glo
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build all LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG" \
    LIB4=libvibrant.a LIB20=libncbidesk.a LIB28=libvibgif.a \
    LIB30=libncbicn3d.a LIB45=libddvlib.a LIB400=libvibrantOGL.a LIB3000=libncbicn3dOGL.a
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
chmod -R ug+rw,o+r . ../include
./ln-if-absent ../corelib/tsprintf.h ../include
./ln-if-absent ../corelib/gifgen.h ../include
./ln-if-absent ../corelib/ncbi*.h ../include
./ln-if-absent ../corelib/tree*.h ../include
./ln-if-absent ../corelib/regex.h ../include
./ln-if-absent ../corelib/matrix.h ../include
./ln-if-absent ../corelib/binary.h ../include
./ln-if-absent ../corelib/morefile/*.h ../include
./ln-if-absent ../corelib/morefile/*.c .
./ln-if-absent ../link/macmet/MoreCarbonAccessors.h ../include
./ln-if-absent ../corelib/ncbilcl.lnx ../include/ncbilcl.h
./ln-if-absent ../corelib/*.c .
./ln-if-absent ../corelib/core*.h .
./ln-if-absent ../asnlib/*.h .
rm -f ../include/asn.h
mv asn.h ../include
./ln-if-absent ../asnlib/*.c .
./ln-if-absent ../connect/*.c .
./ln-if-absent ../connect/ncbi_ansi_ext.h .
./ln-if-absent ../connect/ncbi_assert.h .
./ln-if-absent ../connect/ncbi_priv.h .
./ln-if-absent ../connect/ncbi_comm.h .
./ln-if-absent ../connect/ncbi_config.h .
./ln-if-absent ../connect/ncbi_connssl.h .
./ln-if-absent ../connect/ncbi_lbos.h .
./ln-if-absent ../connect/ncbi_lbosp.h .
./ln-if-absent ../connect/parson.h .
./ln-if-absent ../connect/ncbi_lbsm.h .
make[2]: [makefile:714: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_lbsm_ipc.h .
make[2]: [makefile:715: copy] Error 1 (ignored)
./ln-if-absent ../connect/ncbi_host_infop.h .
./ln-if-absent ../connect/ncbi_server_infop.h .
./ln-if-absent ../connect/ncbi_servicep.h .
./ln-if-absent ../connect/ncbi_socketp.h .
./ln-if-absent ../connect/ncbi_dispd.h .
./ln-if-absent ../connect/ncbi_lbsmd.h .
./ln-if-absent ../connect/ncbi_local.h .
./ln-if-absent ../connect/ncbi_lb.h .
./ln-if-absent ../connect/ncbi_version.h .
./ln-if-absent ../connect/ncbi_base64.h .
./ln-if-absent ../connect/urlquery.h ../include
mkdir ../include/connect
mkdir: cannot create directory ‘../include/connect’: File exists
make[2]: [makefile:727: copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/connect
cp -fp ../connect/ncbi_*.h ../connect/connect_export.h ../include/connect
./ln-if-absent ../util/tables/*.c .
mkdir -p ../include/util/tables
cp -fp ../util/tables/*.h ../include/util/tables
./ln-if-absent ../util/creaders/*.c .
mkdir -p ../include/util/creaders
cp -fp ../util/creaders/*.h ../include/util/creaders
./ln-if-absent ../ctools/*.c .
./ln-if-absent ../ctools/*.h .
mkdir ../include/ctools
mkdir: cannot create directory ‘../include/ctools’: File exists
make[2]: [makefile:738: copy] Error 1 (ignored)
chmod ug+rw,o+r ../include/ctools
cp -fp ../ctools/*.h ../include/ctools
./ln-if-absent ../object/*.c .
./ln-if-absent ../object/*.h ../include
./ln-if-absent ../access/*.c .
./ln-if-absent ../access/*.h ../include
./ln-if-absent ../asnstat/*.h ../include
./ln-if-absent ../api/*.h ../include
./ln-if-absent ../api/*.c .
./ln-if-absent ../api/*.inc .
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../cdromlib/*.c .
./ln-if-absent ../vibrant/*.h ../include
./ln-if-absent ../vibrant/*.c .
./ln-if-absent ../desktop/*.h ../include
./ln-if-absent ../desktop/*.c .
./ln-if-absent ../biostruc/*.h ../include
./ln-if-absent ../biostruc/*.c .
./ln-if-absent ../biostruc/cdd/*.h ../include
./ln-if-absent ../biostruc/cdd/*.c .
./ln-if-absent ../biostruc/cn3d/*.h ../include
./ln-if-absent ../biostruc/cn3d/*.c .
./ln-if-absent ../tools/*.h ../include
./ln-if-absent ../tools/*.c .
./ln-if-absent ../cn3d/*.h ../include
./ln-if-absent ../cn3d/*.c .
./ln-if-absent ../gif/*.c .
./ln-if-absent ../gif/*.h ../include
./ln-if-absent ../ddv/*.h ../include
./ln-if-absent ../ddv/*.c .
./ln-if-absent ../regexp/*.c .
./ln-if-absent ../regexp/*.h ../include
./ln-if-absent ../internal/compr/*.c .
set: No match.
make[2]: [makefile:771: copy] Error 1 (ignored)
./ln-if-absent ../internal/compr/*.h ../include
set: No match.
make[2]: [makefile:772: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.c .
set: No match.
make[2]: [makefile:773: copy] Error 1 (ignored)
./ln-if-absent ../internal/libindx/*.h ../include
set: No match.
make[2]: [makefile:774: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.c .
set: No match.
make[2]: [makefile:775: copy] Error 1 (ignored)
./ln-if-absent ../internal/libpars/*.h ../include
set: No match.
make[2]: [makefile:776: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.c .
set: No match.
make[2]: [makefile:777: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/*.dat .
set: No match.
make[2]: [makefile:778: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideochr*.h ../include
set: No match.
make[2]: [makefile:779: copy] Error 1 (ignored)
./ln-if-absent ../internal/ideogram/ideoorgs.h .
make[2]: [makefile:780: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.c .
set: No match.
make[2]: [makefile:781: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.dat .
set: No match.
make[2]: [makefile:782: copy] Error 1 (ignored)
./ln-if-absent ../internal/ccap/*.h ../include
set: No match.
make[2]: [makefile:783: copy] Error 1 (ignored)
./ln-if-absent ncbidraw.c ncbidrwg.c
./ln-if-absent ncbithr.c ncbithrs.c
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id2arch/*.h ../include
mkdir -p ../include/algo/blast/core
./ln-if-absent ../algo/blast/core/*.c .
./ln-if-absent ../algo/blast/core/*.h .
./ln-if-absent ../algo/blast/core/*.inl .
cp -fp ../algo/blast/core/*.h ../include/algo/blast/core
mkdir -p ../include/algo/blast/composition_adjustment
./ln-if-absent ../algo/blast/composition_adjustment/*.c .
cp -fp ../algo/blast/composition_adjustment/*.h \
	../include/algo/blast/composition_adjustment
mkdir -p ../include/algo/blast/api
./ln-if-absent ../algo/blast/api/*.c .
cp -fp ../algo/blast/api/*.h ../include/algo/blast/api
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithr.c:289:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithr.c: In function ‘s_TlsDestroyAll’:
ncbithr.c:2529:11: warning: variable ‘err_code’ set but not used [-Wunused-but-set-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
cp -p ncbithr.o ../lib
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimain.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimain.c:82:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
   82 | main(int argc, char *argv[])
      | ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbibs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbibs.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbibs.c: In function ‘Nlm_BSSeek’:
ncbibs.c:448:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  448 |     if (sp == bsp->seekptr)     /* already in right position */
      |     ^~
ncbibs.c:451:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  451 |  bsp->seekptr = sp;
      |  ^~~
In file included from ../include/ncbierr.h:105,
                 from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbibs.c:55:
ncbibs.c: In function ‘Nlm_BSGetUint2’:
../include/ncbimisc.h:345:31: warning: statement with no effect [-Wunused-value]
  345 | #define Nlm_SwapUint2(value)  (value)
      |                               ^
ncbibs.c:937:2: note: in expansion of macro ‘Nlm_SwapUint2’
  937 |  Nlm_SwapUint2(retval);
      |  ^~~~~~~~~~~~~
ncbibs.c: In function ‘Nlm_BSGetUint4’:
../include/ncbimisc.h:349:31: warning: statement with no effect [-Wunused-value]
  349 | #define Nlm_SwapUint4(value)  (value)
      |                               ^
ncbibs.c:947:2: note: in expansion of macro ‘Nlm_SwapUint4’
  947 |  Nlm_SwapUint4(retval);
      |  ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wwwutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbiwww.h:106,
                 from wwwutils.c:150:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbierr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbierr.c:235:
In function ‘strncat’,
    inlined from ‘ErrMsgRoot_fopen.isra.0’ at ncbierr.c:955:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 4096 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbienv.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_WorkGetAppParam.part.0’ at ncbienv.c:466:11:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_WorkGetAppParam.part.0’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:464:36: note: in expansion of macro ‘StrLen’
  464 |           Nlm_Int2 bytesToAppend = StrLen(eip->name) + 1;
      |                                    ^~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbienv.c:310:
In function ‘strncpy’,
    inlined from ‘Nlm_TransientLookup’ at ncbienv.c:1788:15,
    inlined from ‘Nlm_TransientLookup’ at ncbienv.c:1761:20:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from corepriv.h:85,
                 from ncbienv.c:310:
ncbienv.c: In function ‘Nlm_TransientLookup’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
../include/ncbistr.h:305:17: note: in expansion of macro ‘Nlm_StrLen’
  305 | #define StrLen  Nlm_StrLen
      |                 ^~~~~~~~~~
ncbienv.c:1786:31: note: in expansion of macro ‘StrLen’
 1786 |               bytesToAppend = StrLen(eip->name) + 1;
      |                               ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbifile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbifile.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiprop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbiprop.c:104:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimath.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbimath.h:69,
                 from ncbimath.c:90:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimath.c: In function ‘general_lngamma’:
ncbimath.c:230:5: warning: ‘y[0]’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  ++y[0];
      |    ~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimem.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimem.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimisc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbimisc.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbimisc.c: In function ‘Nlm_MD5Final’:
ncbimisc.c:2250:26: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to dereference it? [-Wsizeof-pointer-memaccess]
 2250 |     memset(ctx, 0, sizeof(ctx)); /* In case it's sensitive */
      |                          ^
ncbimisc.c: In function ‘XmlPathSuffixIs’:
ncbimisc.c:2966:58: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2966 |     if (StringHasNoText (parentFilter) || parent != NULL && StringICmp (parent->name, parentFilter) == 0) {
      |                                           ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbimsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corepriv.h:85,
                 from ncbimsg.c:167:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbistr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbistr.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisgml.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ncbisgml.c:83:
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:292:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2Ascii’ at ncbisgml.c:273:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:362:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘Nlm_Sgml2AsciiLen’ at ncbisgml.c:348:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 100 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbitime.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbitime.c:77:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbilang.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbilang.c:57:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnbufo.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnbufo.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asndebin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asndebin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndebin.c: In function ‘AsnBinReadVal’:
asndebin.c:565:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  565 |     else
      |     ^~~~
asndebin.c:568:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  568 |  if (atp == NULL)
      |  ^~
asndebin.c:634:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  634 |             else                     /* empty sequence written */
      |             ^~~~
asndebin.c:636:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  636 |       while (atp2 != NULL)
      |       ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnenbin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnenbin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asngen.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asngen.c: In function ‘AsnFindNthPieceOfObject’:
asngen.c:540:16: warning: variable ‘aeop’ set but not used [-Wunused-but-set-variable]
  540 |   AsnExpOptPtr aeop;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnio.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnio.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnio.c: In function ‘AsnIoWriteBlock’:
asnio.c:698:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  698 |     else                    /* use alternative write function */
      |     ^~~~
asnio.c:701:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  701 |  if (retval != bytes_to_write)
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlex.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlex.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnlex.c: In function ‘AsnTxtReadId’:
asnlex.c:198:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  198 |     if ((token == END_STRUCT) && ((isa == SEQ_TYPE) || (isa == SET_TYPE)))
      |     ^~
asnlex.c:201:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  201 |  if (token != IDENT)
      |  ^~
asnlex.c: In function ‘AsnTxtReadVal’:
asnlex.c:345:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  345 |             else                     /* empty sequence written */
      |             ^~~~
asnlex.c:347:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  347 |       while (atp2 != NULL)
      |       ^~~~~
At top level:
asnlex.c:1290:13: warning: ‘AsnLexWordUTF8’ defined but not used [-Wunused-function]
 1290 | static Int2 AsnLexWordUTF8 (AsnIoPtr aip)
      |             ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnlext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnlext.c:57:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnout.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnout.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnout.c: In function ‘AsnOutput’:
asnout.c:159:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  159 |     else
      |     ^~~~
asnout.c:162:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  162 |  for (i = 0; i < 12; i++)
      |  ^~~
asnout.c:213:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  213 |         if (! loader)
      |         ^~
asnout.c:216:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  216 |   attvp = p.root_tmpvalue.next;
      |   ^~~~~
asnout.c:270:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  270 |     if (! loader)
      |     ^~
asnout.c:273:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  273 |  attp = p.root_tmptype.next;
      |  ^~~~
asnout.c:450:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  450 |     if (! loader)
      |     ^~
asnout.c:453:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  453 |  i = 1;
      |  ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asnprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asnprint.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnprint.c: In function ‘GetXMLModuleName’:
asnprint.c:102:2: warning: statement with no effect [-Wunused-value]
  102 |  for (currmod; currmod != NULL; currmod = currmod->next)
      |  ^~~
asnprint.c: In function ‘AsnPrintCloseStruct’:
asnprint.c:1774:7: warning: variable ‘isa’ set but not used [-Wunused-but-set-variable]
 1774 |  Int2 isa;
      |       ^~~
asnprint.c: In function ‘AsnPrintModuleXMLInc’:
asnprint.c:2095:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2095 |  CharPtr ptr;
      |          ^~~
asnprint.c: In function ‘AsnPrintTreeType’:
asnprint.c:2575:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2575 |  ptr = (Uint4)(atp);
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asntypes.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntypes.c:111:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asntypes.c: In function ‘AsnEnumTypeStr’:
asntypes.c:1383:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1383 |     if ((atp->type->isa != ENUM_TYPE) && (atp->type->isa != INTEGER_TYPE))
      |     ^~
asntypes.c:1386:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1386 |  avnp = (AsnValxNodePtr) atp->branch;
      |  ^~~~
asntypes.c: In function ‘AsnTreeLoad’:
asntypes.c:1274:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1274 |     fscanf(fp, "%d %d %d", &numval, &numtype, &nummod);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1288:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1288 |         fscanf(fp, "%d %s %ld %lf %d", &isa, name, &intvalue, &realvalue, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1301:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1301 |         fscanf(fp, "%d %s %d %d %d %d %d %d %d %d %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1302 |             &isa, name, &tagclass, &tagnumber, bools, bools+1, bools+2,
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1303 |             bools+3, bools+4, &defaultvalue, &type, &branch, &next);
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asntypes.c:1333:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
 1333 |         fscanf(fp, "%s %s %d %d", name, fname, &type, &next);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asngenob.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asngenob.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gifgen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gifgen.c:137:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from gifgen.c:137:
gifgen.c: In function ‘gdImageSetClip’:
../include/ncbimem.h:194:21: warning: ‘__builtin_memcmp_eq’ reading 16 bytes from a region of size 8 [-Wstringop-overflow=]
  194 | #define Nlm_MemCmp  memcmp
../include/ncbimem.h:213:17: note: in expansion of macro ‘Nlm_MemCmp’
  213 | #define MemCmp  Nlm_MemCmp
      |                 ^~~~~~~~~~
gifgen.c:1850:17: note: in expansion of macro ‘MemCmp’
 1850 |   if (clip  &&  MemCmp(&clip, &empty_clip, sizeof(gdRect))) {
      |                 ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF togif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from togif.c:111:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
togif.c: In function ‘gdImageCreateFromGif’:
togif.c:961:12: warning: variable ‘AspectRatio’ set but not used [-Wunused-but-set-variable]
  961 |        int AspectRatio;
      |            ^~~~~~~~~~~
togif.c:960:12: warning: variable ‘Background’ set but not used [-Wunused-but-set-variable]
  960 |        int Background;
      |            ^~~~~~~~~~
togif.c:959:12: warning: variable ‘ColorResolution’ set but not used [-Wunused-but-set-variable]
  959 |        int ColorResolution;
      |            ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -DNCBI_NOTHREADS_AVAIL -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbithrs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ncbithrs.c:289:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbithrs.c: In function ‘s_TlsDestroyAll’:
ncbithrs.c:2529:11: warning: unused variable ‘err_code’ [-Wunused-variable]
 2529 |       int err_code = 0;
      |           ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_STRING_H -DREGEX_MALLOC regex.c
regex.c: In function ‘re_match_2’:
regex.c:3762:31: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 3762 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                               ^
regex.c:3762:54: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 3762 |                           if ((int) old_regend[r] >= (int) regstart[r])
      |                                                      ^
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3768:19: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3768 |                   PUSH_FAILURE_POINT (p1 + mcnt, d, -2);
      |                   ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3915:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3915 |           PUSH_FAILURE_POINT (p + mcnt, NULL, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:3968:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 3968 |           PUSH_FAILURE_POINT (p + mcnt, d, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2509 |   high_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |              ^
regex.c:4074:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4074 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2512 |   low_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |             ^
regex.c:4074:13: note: in expansion of macro ‘POP_FAILURE_POINT’
 4074 |             POP_FAILURE_POINT (sdummy, pdummy,
      |             ^~~~~~~~~~~~~~~~~
regex.c:4071:25: warning: variable ‘sdummy’ set but not used [-Wunused-but-set-variable]
 4071 |             const char *sdummy;
      |                         ^~~~~~
regex.c:4070:28: warning: variable ‘pdummy’ set but not used [-Wunused-but-set-variable]
 4070 |             unsigned char *pdummy;
      |                            ^~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4107:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4107 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2421:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2421 |     PUSH_FAILURE_ITEM (lowest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2342:42: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2342 |   fail_stack.stack[fail_stack.avail++] = (fail_stack_elt_t) item
      |                                          ^
regex.c:2424:5: note: in expansion of macro ‘PUSH_FAILURE_ITEM’
 2424 |     PUSH_FAILURE_ITEM (highest_active_reg);    \
      |     ^~~~~~~~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2368:11: warning: unused variable ‘destination’ [-Wunused-variable]
 2368 |     char *destination;       \
      |           ^~~~~~~~~~~
regex.c:4120:11: note: in expansion of macro ‘PUSH_FAILURE_POINT’
 4120 |           PUSH_FAILURE_POINT (0, 0, -2);
      |           ^~~~~~~~~~~~~~~~~~
regex.c:2509:14: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2509 |   high_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |              ^
regex.c:4288:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4288 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
regex.c:2512:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 2512 |   low_reg = (unsigned) POP_FAILURE_ITEM ();    \
      |             ^
regex.c:4288:11: note: in expansion of macro ‘POP_FAILURE_POINT’
 4288 |           POP_FAILURE_POINT (d, p,
      |           ^~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tsprintf.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbiargs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbiargs.c:82:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from tree.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/matrix.h:44,
                 from matrix.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket.c:75:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_socket.c: In function ‘s_GetLocalPort’:
ncbi_socket.c:440:50: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
  440 |     if (getsockname(fd, (struct sockaddr*) &sin, &sinlen) == 0
      |                                                  ^~~~~~~
      |                                                  |
      |                                                  TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_IsConnected_’:
ncbi_socket.c:2572:73: warning: pointer targets in passing argument 5 of ‘getsockopt’ differ in signedness [-Wpointer-sign]
 2572 |         if (getsockopt(sock->sock, SOL_SOCKET, SO_ERROR, (void*) error, &len)
      |                                                                         ^~~~
      |                                                                         |
      |                                                                         TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:210:32: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  210 |          socklen_t *__restrict __optlen) __THROW;
      |          ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~
ncbi_socket.c: In function ‘s_CreateOnTop’:
ncbi_socket.c:4435:35: warning: pointer targets in passing argument 3 of ‘getpeername’ differ in signedness [-Wpointer-sign]
 4435 |     if (getpeername(fd, &peer.sa, &peerlen) != 0) {
      |                                   ^~~~~~~~
      |                                   |
      |                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:131:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  131 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c:4471:43: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4471 |             if (getsockname(fd, &peer.sa, &peerlen) != 0)
      |                                           ^~~~~~~~
      |                                           |
      |                                           TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_CreateListening’:
ncbi_socket.c:4865:48: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 4865 |         error = getsockname(x_lsock, &addr.sa, &addrlen) != 0
      |                                                ^~~~~~~~
      |                                                |
      |                                                TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
ncbi_socket.c: In function ‘s_Accept’:
ncbi_socket.c:5105:49: warning: pointer targets in passing argument 3 of ‘accept’ differ in signedness [-Wpointer-sign]
 5105 |     if ((x_sock = accept(lsock->sock, &addr.sa, &addrlen)) == SOCK_INVALID) {
      |                                                 ^~~~~~~~
      |                                                 |
      |                                                 TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:233:28: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  233 |      socklen_t *__restrict __addr_len);
      |      ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘s_RecvMsg’:
ncbi_socket.c:5409:52: warning: pointer targets in passing argument 6 of ‘recvfrom’ differ in signedness [-Wpointer-sign]
 5409 |                           (struct sockaddr*) &sin, &sinlen);
      |                                                    ^~~~~~~
      |                                                    |
      |                                                    TSOCK_socklen_t * {aka int *}
In file included from /usr/s390x-linux-gnu/include/sys/socket.h:269,
                 from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/bits/socket2.h:65:49: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
   65 |    __SOCKADDR_ARG __addr, socklen_t *__restrict __addr_len)
      |                           ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
ncbi_socket.c: In function ‘TRIGGER_Create’:
ncbi_socket.c:5661:18: warning: unused variable ‘x_id’ [-Wunused-variable]
 5661 |     unsigned int x_id = ++s_ID_Counter;
      |                  ^~~~
ncbi_socket.c: In function ‘DSOCK_Bind’:
ncbi_socket.c:7390:51: warning: pointer targets in passing argument 3 of ‘getsockname’ differ in signedness [-Wpointer-sign]
 7390 |         error = getsockname(sock->sock, &addr.sa, &addrlen) != 0
      |                                                   ^~~~~~~~
      |                                                   |
      |                                                   TSOCK_socklen_t * {aka int *}
In file included from ncbi_socketp.h:54,
                 from ncbi_connssl.h:37,
                 from ncbi_socket.c:76:
/usr/s390x-linux-gnu/include/sys/socket.h:117:26: note: expected ‘socklen_t * restrict’ {aka ‘unsigned int * restrict’} but argument is of type ‘TSOCK_socklen_t *’ {aka ‘int *’}
  117 |    socklen_t *__restrict __len) __THROW;
      |    ~~~~~~~~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_buffer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_buffer.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_types.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_core_c.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_core_c.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_util.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_util.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_priv.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_priv.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ansi_ext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ansi_ext.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connection.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connection.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_connector.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_connutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_connutil.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_file_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_file_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_heapmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_assert.h:35,
                 from ncbi_priv.h:61,
                 from ncbi_heapmgr.c:115:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_http_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_http_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_memory_connector.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbsmd_stub.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_host_info.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_server_info.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_server_info.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_version.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_version.h:37,
                 from ncbi_version.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_service_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_service_connector.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ftp_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ftp_connector.c:49:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_dispd.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_dispd.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lb.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_local.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_local.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_socket_connector.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_socket_connector.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urlquery.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from urlquery.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF binary.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/binary.h:60,
                 from binary.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_sendmail.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_sendmail.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_base64.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn_connection.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_lbos.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_lbos.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_lbos.c: In function ‘s_LBOS_ReadLbosresolver’:
ncbi_lbos.c:756:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  756 |     if (s_LBOS_Lbosresolver == NULL)
      |     ^~
ncbi_lbos.c:759:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  759 |         s_LBOS_Lbosresolver = strdup(str + 7);
      |         ^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF parson.c
parson.c: In function ‘remove_comments’:
parson.c:281:13: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  281 |             for (i = 0; i < (ptr - string) + end_token_len; i++)
      |             ^~~
parson.c:283:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  283 |            string = ptr + end_token_len - 1;
      |            ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_ipv6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_ipv6.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF raw_scoremat.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnflpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnflpt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnfspc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnfspc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drwnmfls.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from drwnmfls.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libncbi.a
ar cru libncbi.a ncbimain.o ncbibs.o wwwutils.o ncbierr.o ncbienv.o ncbifile.o ncbiprop.o ncbimath.o ncbimem.o ncbimisc.o ncbimsg.o ncbistr.o ncbisgml.o ncbitime.o ncbilang.o asnbufo.o asndebin.o asnenbin.o asngen.o asnio.o asnlex.o asnlext.o asnout.o asnprint.o asntypes.o asngenob.o gifgen.o togif.o ncbithrs.o regex.o tsprintf.o ncbiargs.o tree.o matrix.o ncbi_socket.o ncbi_buffer.o ncbi_types.o ncbi_core.o ncbi_core_c.o ncbi_util.o ncbi_priv.o ncbi_ansi_ext.o ncbi_connection.o ncbi_connector.o ncbi_connutil.o ncbi_file_connector.o ncbi_heapmgr.o ncbi_http_connector.o ncbi_memory_connector.o ncbi_lbsmd_stub.o ncbi_host_info.o ncbi_server_info.o ncbi_service.o ncbi_version.o ncbi_service_connector.o ncbi_ftp_connector.o ncbi_dispd.o ncbi_lb.o ncbi_local.o ncbi_socket_connector.o urlquery.o binary.o ncbi_sendmail.o ncbi_base64.o asn_connection.o ncbi_lbos.o parson.o ncbi_ipv6.o raw_scoremat.o drwnflpt.o drwnfspc.o drwnmfls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbi.a ../lib
ranlib ../lib/libncbi.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -DHAVE_LIBGNUTLS ncbi_gnutls.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ncbi_config.h:38,
                 from ncbi_ansi_ext.h:37,
                 from ncbi_gnutls.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbi_gnutls.c: In function ‘s_GnuTlsCreate’:
ncbi_gnutls.c:293:5: warning: ‘gnutls_connection_end_t’ is deprecated [-Wdeprecated-declarations]
  293 |     gnutls_connection_end_t end = (side == eSOCK_Client
      |     ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ncbi_gnutls.c:35:
ncbi_gnutls.c: In function ‘s_GnuTlsInit’:
ncbi_priv.h:217:33: warning: ‘version’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  217 |             _mess.message     = NcbiMessagePlusError(&_mess.dynamic,    \
      |                                 ^~~~~~~~~~~~~~~~~~~~
ncbi_gnutls.c:582:17: note: ‘version’ was declared here
  582 |     const char* version;
      |                 ^~~~~~~
rm -f libconnssl.a
ar cru libconnssl.a ncbi_gnutls.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libconnssl.a ../lib
ranlib ../lib/libconnssl.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objacces.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnacces.h:9,
                 from objacces.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objacces.c: In function ‘LinkSetAsnWrite’:
objacces.c:140:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  140 |     if (atp == NULL)
      |     ^~
objacces.c:143:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  143 |  if (lsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objacces.c: In function ‘LinkSetAsnRead’:
objacces.c:216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  216 |     if (atp == NULL)
      |     ^~
objacces.c:219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  219 |  lsp = LinkSetNew();
      |  ^~~
objacces.c:220:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  220 |     if (lsp == NULL)
      |     ^~
objacces.c:223:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  223 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objacces.c:226:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  226 |     if (atp == NULL)
      |     ^~
objacces.c:228:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  228 |  if (AsnReadVal(aip, atp, &av) <= 0)     /* get the num */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objalign.h:103,
                 from objalign.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalign.c: In function ‘CommonSeqAlignLabelFunc’:
objalign.c:135:27: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
  135 |  CharPtr curr, typelabel, tmp;
      |                           ^~~
objalign.c: In function ‘SeqAlignAsnRead’:
objalign.c:597:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  597 |     if (atp == NULL)
      |     ^~
objalign.c:600:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  600 |  sap = SeqAlignNew();
      |  ^~~
objalign.c:601:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  601 |     if (sap == NULL)
      |     ^~
objalign.c:604:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  604 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseDiagAsnWrite’:
objalign.c:1020:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1020 |     if (atp == NULL)
      |     ^~
objalign.c:1023:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1023 |  if (ddp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseDiagAsnRead’:
objalign.c:1112:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1112 |     if (atp == NULL)
      |     ^~
objalign.c:1115:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1115 |  ddp = DenseDiagNew();
      |  ^~~
objalign.c:1116:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1116 |     if (ddp == NULL)
      |     ^~
objalign.c:1119:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1119 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘DenseSegAsnWrite’:
objalign.c:1268:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1268 |     if (atp == NULL)
      |     ^~
objalign.c:1271:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1271 |  if (dsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c: In function ‘DenseSegAsnRead’:
objalign.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objalign.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  dsp = DenseSegNew();
      |  ^~~
objalign.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (dsp == NULL)
      |     ^~
objalign.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘StdSegAsnWrite’:
objalign.c:1559:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1559 |     if (atp == NULL)
      |     ^~
objalign.c:1562:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1562 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1581:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1581 |     if (! SeqLocSetAsnWrite(ssp->loc, aip, STD_SEG_loc, STD_SEG_loc_E))
      |     ^~
objalign.c:1584:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1584 |  if (ssp->scores != NULL)
      |  ^~
objalign.c: In function ‘StdSegAsnRead’:
objalign.c:1626:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1626 |     if (atp == NULL)
      |     ^~
objalign.c:1629:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1629 |  ssp = StdSegNew();
      |  ^~~
objalign.c:1630:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1630 |     if (ssp == NULL)
      |     ^~
objalign.c:1633:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1633 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SeqAlignSetAsnWrite’:
objalign.c:1704:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1704 |     if (atp == NULL)
      |     ^~
objalign.c:1708:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1708 |  oldsap = sap;
      |  ^~~~~~
objalign.c: In function ‘PackSegAsnWrite’:
objalign.c:1892:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1892 |     if (atp == NULL)
      |     ^~
objalign.c:1895:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1895 |  if (psp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objalign.c:1926:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1926 |     if (! AsnCloseStruct(aip, PACKED_SEG_starts, (Pointer)psp->starts))
      |     ^~
objalign.c:1929:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1929 |  av.ptrvalue = psp->present;
      |  ^~
objalign.c: In function ‘PackSegAsnRead’:
objalign.c:1999:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1999 |     if (atp == NULL)
      |     ^~
objalign.c:2002:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2002 |  psp = PackSegNew();
      |  ^~~
objalign.c:2003:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2003 |     if (psp == NULL)
      |     ^~
objalign.c:2006:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2006 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
objalign.c: In function ‘SplicedSegAsnRead’:
objalign.c:2179:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2179 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegAsnRead’:
objalign.c:2422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2422 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedExonAsnRead’:
objalign.c:2614:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2614 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierFree’:
objalign.c:2875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2875 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘ProductPosFree’:
objalign.c:3050:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3050 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SplicedExonChunkFree’:
objalign.c:3225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3225 |    Pointer pnt;
      |            ^~~
objalign.c: In function ‘SpliceSiteAsnRead’:
objalign.c:3469:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3469 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘ProtPosAsnRead’:
objalign.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseAlignAsnRead’:
objalign.c:3798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3798 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SparseSegExtAsnRead’:
objalign.c:4020:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4020 |    AsnReadFunc func;
      |                ^~~~
objalign.c: In function ‘SplicedSegModifierAsnRead’:
objalign.c:2955:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2955 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘SplicedExonChunkAsnRead’:
objalign.c:3326:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3326 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalign.c: In function ‘ProductPosAsnRead’:
objalign.c:3130:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3130 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objall.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from objall.c:63:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objbibli.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnbibli.h:9,
                 from objbibli.c:113:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objbibli.c: In function ‘AffilAsnRead’:
objbibli.c:208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  208 |     if (atp == NULL)
      |     ^~
objbibli.c:211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  211 |  afp = AffilNew();
      |  ^~~
objbibli.c: In function ‘AffilAsnWrite’:
objbibli.c:296:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  296 |     if (atp == NULL)
      |     ^~
objbibli.c:299:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  299 |  if (afp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘AuthListFree’:
objbibli.c:458:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  458 |     if (alp->affil != NULL)
      |     ^~
objbibli.c:460:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  460 |  return (AuthListPtr)MemFree(alp);
      |  ^~~~~~
objbibli.c: In function ‘AuthListAsnRead’:
objbibli.c:489:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  489 |     if (atp == NULL)
      |     ^~
objbibli.c:492:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  492 |  alp = AuthListNew();
      |  ^~~
objbibli.c: In function ‘AuthListAsnWrite’:
objbibli.c:583:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  583 |     if (atp == NULL)
      |     ^~
objbibli.c:586:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  586 |  if (alp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:590:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  590 |     if (! AsnOpenStruct(aip, atp, (Pointer)alp))   /* open AuthList SEQUENCE */
      |     ^~
objbibli.c:593:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  593 |  av.ptrvalue = alp->names;
      |  ^~
objbibli.c: In function ‘AuthorFree’:
objbibli.c:677:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  677 |     if (ap->affil != NULL)
      |     ^~
objbibli.c:679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  679 |  return (AuthorPtr)MemFree(ap);
      |  ^~~~~~
objbibli.c: In function ‘AuthorAsnRead’:
objbibli.c:707:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  707 |     if (atp == NULL)
      |     ^~
objbibli.c:710:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  710 |  ap = AuthorNew();
      |  ^~
objbibli.c: In function ‘AuthorAsnWrite’:
objbibli.c:779:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  779 |     if (atp == NULL)
      |     ^~
objbibli.c:782:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  782 |  if (ap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitArtAsnRead’:
objbibli.c:925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  925 |     if (atp == NULL)
      |     ^~
objbibli.c:928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  928 |  cap = CitArtNew();
      |  ^~~
objbibli.c: In function ‘CitArtAsnWrite’:
objbibli.c:1027:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1027 |     if (atp == NULL)
      |     ^~
objbibli.c:1030:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1030 |  if (cap == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1034:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1034 |     if (! AsnOpenStruct(aip, atp, (Pointer)cap))  /* open the SEQUENCE */
      |     ^~
objbibli.c:1037:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1037 |  if (cap->title != NULL)
      |  ^~
objbibli.c: In function ‘ImprintAsnRead’:
objbibli.c:1152:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1152 |     if (atp == NULL)
      |     ^~
objbibli.c:1155:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1155 |  ip = ImprintNew();
      |  ^~
objbibli.c: In function ‘ImprintAsnWrite’:
objbibli.c:1251:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1251 |     if (atp == NULL)
      |     ^~
objbibli.c:1254:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1254 |  if (ip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitRetractAsnRead’:
objbibli.c:1391:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1391 |     if (atp == NULL)
      |     ^~
objbibli.c:1394:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1394 |  crp = CitRetractNew();
      |  ^~~
objbibli.c: In function ‘CitRetractAsnWrite’:
objbibli.c:1445:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1445 |     if (atp == NULL)
      |     ^~
objbibli.c:1448:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1448 |  if (crp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitJourAsnRead’:
objbibli.c:1524:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1524 |     if (atp == NULL)
      |     ^~
objbibli.c:1527:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1527 |  cjp = CitJourNew();
      |  ^~~
objbibli.c: In function ‘CitJourAsnWrite’:
objbibli.c:1576:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1576 |     if (atp == NULL)
      |     ^~
objbibli.c:1579:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1579 |  if (cjp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1585:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1585 |     if (! ImprintAsnWrite(cjp->imp, aip, CIT_JOUR_imp))
      |     ^~
objbibli.c:1587:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1587 |     if (! AsnCloseStruct(aip, atp, (Pointer)cjp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitBookAsnRead’:
objbibli.c:1676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1676 |     if (atp == NULL)
      |     ^~
objbibli.c:1679:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1679 |  cbp = CitBookNew();
      |  ^~~
objbibli.c: In function ‘CitBookAsnWrite’:
objbibli.c:1744:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1744 |     if (atp == NULL)
      |     ^~
objbibli.c:1747:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1747 |  if (cbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1760:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1760 |     if (! ImprintAsnWrite(cbp->imp, aip, CIT_BOOK_imp))
      |     ^~
objbibli.c:1762:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1762 |     if (! AsnCloseStruct(aip, atp, (Pointer)cbp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitProcAsnWrite’:
objbibli.c:1879:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1879 |     if (atp == NULL)
      |     ^~
objbibli.c:1882:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1882 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:1901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1901 |     if (! AsnCloseStruct(aip, CIT_PROC_meet, (Pointer)cpp->otherdata))
      |     ^~
objbibli.c:1903:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1903 |     if (! AsnCloseStruct(aip, atp, (Pointer)cpp))    /* end SEQUENCE */
      |     ^~
objbibli.c: In function ‘CitLetAsnWrite’:
objbibli.c:1995:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1995 |     if (atp == NULL)
      |     ^~
objbibli.c:1998:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1998 |  if (clp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitPatAsnRead’:
objbibli.c:2091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2091 |     if (atp == NULL)
      |     ^~
objbibli.c:2094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2094 |  cpp = CitPatNew();
      |  ^~~
objbibli.c: In function ‘CitPatAsnWrite’:
objbibli.c:2213:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2213 |     if (atp == NULL)
      |     ^~
objbibli.c:2216:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2216 |  if (cpp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘IdPatAsnRead’:
objbibli.c:2346:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2346 |     if (atp == NULL)
      |     ^~
objbibli.c:2349:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2349 |  idp = IdPatNew();
      |  ^~~
objbibli.c: In function ‘IdPatAsnWrite’:
objbibli.c:2412:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2412 |     if (atp == NULL)
      |     ^~
objbibli.c:2415:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2415 |  if (idp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitGenAsnRead’:
objbibli.c:2546:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2546 |     if (atp == NULL)
      |     ^~
objbibli.c:2549:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2549 |  cgp = CitGenNew();
      |  ^~~
objbibli.c: In function ‘CitGenAsnWrite’:
objbibli.c:2627:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2627 |     if (atp == NULL)
      |     ^~
objbibli.c:2630:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2630 |  if (cgp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘TitleAsnWrite’:
objbibli.c:2825:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2825 |     if (atp == NULL)
      |     ^~
objbibli.c:2828:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2828 |  if (tp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘CitSubFree’:
objbibli.c:2909:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2909 |     if (csp == NULL)
      |     ^~
objbibli.c:2912:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2912 |  AuthListFree(csp->authors);
      |  ^~~~~~~~~~~~
objbibli.c: In function ‘CitSubAsnRead’:
objbibli.c:2943:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2943 |     if (atp == NULL)
      |     ^~
objbibli.c:2946:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2946 |  csp = CitSubNew();
      |  ^~~
objbibli.c:2958:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2958 |     if (atp == NULL)
      |     ^~
objbibli.c:2961:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2961 |  if (atp == CIT_SUB_imp)
      |  ^~
objbibli.c: In function ‘CitSubAsnWrite’:
objbibli.c:3029:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3029 |     if (atp == NULL)
      |     ^~
objbibli.c:3032:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3032 |  if (csp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c:3038:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3038 |     if (! AuthListAsnWrite(csp->authors, aip, CIT_SUB_authors))
      |     ^~
objbibli.c:3041:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3041 |  if (csp->imp != NULL)
      |  ^~
objbibli.c: In function ‘PatPrioritySetAsnRead’:
objbibli.c:3694:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3694 |      if (ppp == NULL)
      |      ^~
objbibli.c:3697:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3697 |   if (head == NULL)
      |   ^~
objbibli.c:3715:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3715 |      if (atp == NULL)
      |      ^~
objbibli.c:3717:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3717 |   ppp->date = DateAsnRead(aip, atp);
      |   ^~~
objbibli.c: In function ‘PatPrioritySetAsnWrite’:
objbibli.c:3755:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3755 |     if (! AsnOpenStruct(aip, set, (Pointer)ppp))  /* open the SEQUENCE OF */
      |     ^~
objbibli.c:3758:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3758 |  for (tmp = ppp; tmp != NULL; tmp = tmp->next)
      |  ^~~
objbibli.c: In function ‘ArticleIdAsnRead’:
objbibli.c:3849:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3849 |     if (atp == NULL)
      |     ^~
objbibli.c:3852:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3852 |  aidp = ArticleIdNew();
      |  ^~~~
objbibli.c: In function ‘ArticleIdAsnWrite’:
objbibli.c:3925:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3925 |     if (atp == NULL)
      |     ^~
objbibli.c:3928:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3928 |  if (aidp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objbibli.c: In function ‘PubStatusDateAsnRead’:
objbibli.c:4039:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4039 |     if (atp == NULL)
      |     ^~
objbibli.c:4042:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4042 |  psdp = PubStatusDateNew();
      |  ^~~~
objbibli.c: In function ‘PubStatusDateAsnWrite’:
objbibli.c:4091:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4091 |     if (atp == NULL)
      |     ^~
objbibli.c:4094:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4094 |  if (psdp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfeat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from objfeat.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objfeat.c: In function ‘ModelEvidenceSupportAsnRead’:
objfeat.c:1500:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1500 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExperimentSupportAsnRead’:
objfeat.c:1748:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1748 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ProgramIdAsnRead’:
objfeat.c:1933:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1933 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘EvidenceBasisAsnRead’:
objfeat.c:2103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2103 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘InferenceSupportAsnRead’:
objfeat.c:2267:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2267 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ModelEvidenceItemAsnRead’:
objfeat.c:2483:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2483 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SeqFeatSupportAsnRead’:
objfeat.c:2688:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2688 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualAsnRead’:
objfeat.c:4244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4244 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAQualSetAsnRead’:
objfeat.c:4396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4396 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘RNAGenAsnRead’:
objfeat.c:4524:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4524 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘GeneNomenclatureAsnRead’:
objfeat.c:4707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4707 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘OrgNameMatch’:
objfeat.c:5957:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
 5957 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
objfeat.c: In function ‘TaxElementAsnWrite’:
objfeat.c:7399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 7399 |     if (! AsnOpenStruct(aip, atp, (Pointer)tep))
      |     ^~
objfeat.c:7402:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 7402 |         av.intvalue = (Int4)(tep->fixed_level);
      |         ^~
objfeat.c: In function ‘PCRPrimerAsnRead’:
objfeat.c:8276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8276 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRPrimerSetAsnRead’:
objfeat.c:8421:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8421 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionAsnRead’:
objfeat.c:8542:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8542 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PCRReactionSetAsnRead’:
objfeat.c:8685:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8685 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneRefAsnRead’:
objfeat.c:8812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8812 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqSetAsnRead’:
objfeat.c:9005:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9005 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘CloneSeqAsnRead’:
objfeat.c:9135:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9135 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginAsnRead’:
objfeat.c:9487:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9487 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘SomaticOriginConditionAsnRead’:
objfeat.c:9566:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9566 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VariationRefAsnRead’:
objfeat.c:9645:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9645 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_loss_of_heterozygosityAsnRead’:
objfeat.c:10687:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10687 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_frameshiftAsnRead’:
objfeat.c:10765:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10765 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘VarRefDataFree’:
objfeat.c:10865:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10865 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VarRefDataSetAsnRead’:
objfeat.c:10918:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10918 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Consequence_elementFree’:
objfeat.c:11112:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11112 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘VariationInstAsnRead’:
objfeat.c:11241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11241 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: At top level:
objfeat.c:11393:1: warning: "/*" within comment [-Wcomment]
11393 | /**************************************************
      |  
objfeat.c: In function ‘VariantPropertiesAsnRead’:
objfeat.c:11422:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11422 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PhenotypeAsnRead’:
objfeat.c:11746:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11746 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘PopulationDataAsnRead’:
objfeat.c:11945:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11945 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘ExtLocAsnRead’:
objfeat.c:12161:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12161 |    AsnReadFunc func;
      |                ^~~~
objfeat.c: In function ‘Seq_seqFree’:
objfeat.c:12327:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12327 |    Pointer pnt;
      |            ^~~
objfeat.c: In function ‘DeltaItemAsnRead’:
objfeat.c:12360:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12360 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asngen.h:9,
                 from objgen.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgen.c: In function ‘DateClean’:
objgen.c:161:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  161 |     if (dp == NULL)
      |     ^~
objgen.c:164:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  164 |  memset(dp, 0, sizeof(NCBI_Date));
      |  ^~~~~~
objgen.c: In function ‘DateAsnWrite’:
objgen.c:399:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  399 |     if (atp == NULL)
      |     ^~
objgen.c:402:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  402 |  if (dp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘DateAsnRead’:
objgen.c:494:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  494 |     if (atp == NULL)
      |     ^~
objgen.c:497:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  497 |  dp = DateNew();
      |  ^~
objgen.c:498:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  498 |     if (dp == NULL)
      |     ^~
objgen.c:501:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  501 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c: In function ‘DbtagFree’:
objgen.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (dbt == NULL)
      |     ^~
objgen.c:755:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  755 |  dbt->tag = ObjectIdFree(dbt->tag);
      |  ^~~
objgen.c: In function ‘DbtagAsnRead’:
objgen.c:784:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  784 |     if (atp == NULL)
      |     ^~
objgen.c:787:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  787 |  dbt = DbtagNew();
      |  ^~~
objgen.c:788:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  788 |     if (dbt == NULL)
      |     ^~
objgen.c:791:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  791 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c:799:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  799 |     if (dbt->tag == NULL)
      |     ^~
objgen.c:802:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  802 |  atp = AsnReadId(aip, amp, atp); if (atp == NULL) goto erret;   /* END_STRUCT */
      |  ^~~
objgen.c: In function ‘DbtagAsnWrite’:
objgen.c:833:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  833 |     if (atp == NULL)
      |     ^~
objgen.c:836:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  836 |  if (dbt == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘ObjectIdAsnRead’:
objgen.c:980:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  980 |     if (atp == NULL)
      |     ^~
objgen.c:983:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  983 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE value (nothing) */
      |  ^~
objgen.c:989:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  989 |     if (oid == NULL)
      |     ^~
objgen.c:991:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  991 |  if (atp == OBJECT_ID_id)
      |  ^~
objgen.c: In function ‘ObjectIdAsnWrite’:
objgen.c:1024:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1024 |     if (atp == NULL)
      |     ^~
objgen.c:1027:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1027 |  if (oid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘NameStdFree’:
objgen.c:1174:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1174 |     if (nsp == NULL)
      |     ^~
objgen.c:1177:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1177 |  for (i = 0; i < 7; i++)
      |  ^~~
objgen.c: In function ‘NameStdAsnRead’:
objgen.c:1208:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1208 |     if (atp == NULL)
      |     ^~
objgen.c:1211:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1211 |  nsp = NameStdNew();
      |  ^~~
objgen.c:1212:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1212 |     if (nsp == NULL)
      |     ^~
objgen.c:1215:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1215 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the START_STRUCT */
      |  ^~
objgen.c: In function ‘NameStdAsnWrite’:
objgen.c:1271:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1271 |     if (atp == NULL)
      |     ^~
objgen.c:1274:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1274 |  if (nsp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘PersonIdFree’:
objgen.c:1368:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1368 |     if (pid == NULL)
      |     ^~
objgen.c:1371:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1371 |  if (pid->choice == 1)          /* Dbtag */
      |  ^~
objgen.c: In function ‘PersonIdAsnWrite’:
objgen.c:1464:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1464 |     if (atp == NULL)
      |     ^~
objgen.c:1467:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1467 |  if (pid == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objgen.c: In function ‘IntFuzzAsnRead’:
objgen.c:1682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1682 |     if (atp == NULL)
      |     ^~
objgen.c:1685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1685 |  ifp = IntFuzzNew();
      |  ^~~
objgen.c:1686:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1686 |     if (ifp == NULL)
      |     ^~
objgen.c:1689:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1689 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the CHOICE (nothing) */
      |  ^~
objgen.c: In function ‘UserFieldAsnRead’:
objgen.c:1944:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1944 |     if (atp == NULL)
      |     ^~
objgen.c:1947:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1947 |  ufp = UserFieldNew();
      |  ^~~
objgen.c: In function ‘UserObjectAsnRead’:
objgen.c:2434:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2434 |     if (atp == NULL)
      |     ^~
objgen.c:2437:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2437 |  uop = UserObjectNew();
      |  ^~~
objgen.c:2438:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2438 |     if (uop == NULL)
      |     ^~
objgen.c:2441:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2441 |  if (AsnReadVal(aip, atp, &av) <= 0) goto erret;    /* read the start struct */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objloc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from objloc.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objloc.c: In function ‘SeqIdAsnWrite’:
objloc.c:313:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  313 |     if (atp == NULL)
      |     ^~
objloc.c:316:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  316 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIdAsnRead’:
objloc.c:443:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  443 |     if (atp == NULL)
      |     ^~
objloc.c:446:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  446 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c: In function ‘SeqIdDup’:
objloc.c:587:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  587 |     if (oldid == NULL)
      |     ^~
objloc.c:590:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  590 |  newid = ValNodeNew(NULL);
      |  ^~~~~
objloc.c: In function ‘SeqIdSetAsnRead’:
objloc.c:752:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  752 |     if (AsnReadVal(aip, atp, &av) <= 0)    /* end struct */
      |     ^~
objloc.c:754:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  754 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIdSetAsnWrite’:
objloc.c:786:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  786 |     if (atp2 == NULL)
      |     ^~
objloc.c:789:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  789 |  if (anp == NULL) { AsnNullValueMsg(aip, settype); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnWrite’:
objloc.c:864:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  864 |     if (atp == NULL)
      |     ^~
objloc.c:867:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  867 |  if (tsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘TextSeqIdAsnRead’:
objloc.c:934:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  934 |     if (atp == NULL)
      |     ^~
objloc.c:937:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  937 |  tsip = TextSeqIdNew();
      |  ^~~~
objloc.c:938:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  938 |     if (tsip == NULL)
      |     ^~
objloc.c:941:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  941 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnWrite’:
objloc.c:1018:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1018 |     if (atp == NULL)
      |     ^~
objloc.c:1021:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1021 |  if (psip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PatentSeqIdAsnRead’:
objloc.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objloc.c:1071:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1071 |  psip = PatentSeqIdNew();
      |  ^~~~
objloc.c:1072:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1072 |     if (psip == NULL)
      |     ^~
objloc.c:1075:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1075 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘GiimAsnWrite’:
objloc.c:1151:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1151 |     if (atp == NULL)
      |     ^~
objloc.c:1154:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1154 |  if (gip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘GiimAsnRead’:
objloc.c:1216:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1216 |     if (gip == NULL)
      |     ^~
objloc.c:1219:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1219 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnWrite’:
objloc.c:1305:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1305 |     if (atp == NULL)
      |     ^~
objloc.c:1308:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1308 |  if (pdbsip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PDBSeqIdAsnRead’:
objloc.c:1374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1374 |     if (atp == NULL)
      |     ^~
objloc.c:1377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1377 |  pdbsip = PDBSeqIdNew();
      |  ^~~~~~
objloc.c:1378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1378 |     if (pdbsip == NULL)
      |     ^~
objloc.c:1381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1381 |  if ((AsnReadVal(aip, oldtype, &av)) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqLocAsnWrite’:
objloc.c:1528:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1528 |     if (atp == NULL)
      |     ^~
objloc.c:1531:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1531 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocAsnRead’:
objloc.c:1624:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1624 |     if (atp == NULL)
      |     ^~
objloc.c:1627:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1627 |  anp = ValNodeNew(NULL);
      |  ^~~
objloc.c:1628:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1628 |     if (anp == NULL)
      |     ^~
objloc.c:1631:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1631 |  if (AsnReadVal(aip, atp, &av) <= 0)  /* read the CHOICE value (nothing) */
      |  ^~
objloc.c: In function ‘SeqLocMixAsnWrite’:
objloc.c:1738:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1738 |     if (atp == NULL)
      |     ^~
objloc.c:1741:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1741 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocEquivAsnWrite’:
objloc.c:1805:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1805 |     if (atp == NULL)
      |     ^~
objloc.c:1808:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1808 |  if (anp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnWrite’:
objloc.c:1873:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1873 |     if (atp2 == NULL)
      |     ^~
objloc.c:1876:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1876 |  if (anp == NULL) { AsnNullValueMsg(aip, set); goto erret; }
      |  ^~
objloc.c: In function ‘SeqLocSetAsnRead’:
objloc.c:1940:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1940 |     if (AsnReadVal(aip, atp, &av) <= 0)      /* read END_STRUCT */
      |     ^~
objloc.c:1942:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1942 |  if (first == NULL)
      |  ^~
objloc.c: In function ‘SeqIntAsnWrite’:
objloc.c:2022:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2022 |     if (atp == NULL)
      |     ^~
objloc.c:2025:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2025 |  if (sip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqIntAsnRead’:
objloc.c:2095:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2095 |     if (atp == NULL)
      |     ^~
objloc.c:2098:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2098 |  sip = SeqIntNew();
      |  ^~~
objloc.c:2099:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2099 |     if (sip == NULL)
      |     ^~
objloc.c:2102:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2102 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqIntAsnWrite’:
objloc.c:2179:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2179 |     if (atp == NULL)
      |     ^~
objloc.c:2181:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2181 |  oldsip = sip;
      |  ^~~~~~
objloc.c:2185:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2185 |     if (! AsnOpenStruct(aip, atp, (Pointer)oldsip))
      |     ^~
objloc.c:2187:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2187 |  for ( ;sip != NULL; sip = sip->next)
      |  ^~~
objloc.c: In function ‘SeqPntAsnWrite’:
objloc.c:2309:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2309 |     if (atp == NULL)
      |     ^~
objloc.c:2312:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2312 |  if (spp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqPntAsnRead’:
objloc.c:2374:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2374 |     if (atp == NULL)
      |     ^~
objloc.c:2377:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2377 |  spp = SeqPntNew();
      |  ^~~
objloc.c:2378:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2378 |     if (spp == NULL)
      |     ^~
objloc.c:2381:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2381 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘PackSeqPntAsnWrite’:
objloc.c:2479:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2479 |     if (atp == NULL)
      |     ^~
objloc.c:2482:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2482 |  if (pspp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘PackSeqPntAsnRead’:
objloc.c:2553:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2553 |     if (atp == NULL)
      |     ^~
objloc.c:2556:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2556 |  pspp = PackSeqPntNew();
      |  ^~~~
objloc.c:2557:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2557 |     if (pspp == NULL)
      |     ^~
objloc.c:2560:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2560 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
objloc.c: In function ‘SeqBondAsnWrite’:
objloc.c:2724:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2724 |     if (atp == NULL)
      |     ^~
objloc.c:2727:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2727 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objloc.c: In function ‘SeqBondAsnRead’:
objloc.c:2776:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2776 |     if (atp == NULL)
      |     ^~
objloc.c:2779:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2779 |  sbp = SeqBondNew();
      |  ^~~
objloc.c:2780:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2780 |     if (sbp == NULL)
      |     ^~
objloc.c:2783:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2783 |  if (AsnReadVal(aip, oldtype, &av) <= 0)    /* read the START_STRUCT */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmedli.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from objmedli.c:104:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmedli.c: In function ‘MedlineMeshAsnRead’:
objmedli.c:248:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  248 |     if (atp == NULL)
      |     ^~
objmedli.c:251:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  251 |  mmp = MedlineMeshNew();
      |  ^~~
objmedli.c: In function ‘DocRefFree’:
objmedli.c:1190:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1190 |     if (drp == NULL)
      |     ^~
objmedli.c:1193:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1193 |  return (DocRefPtr)MemFree(drp);
      |  ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objpub.h:70,
                 from objpub.c:125:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:831:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  831 |     if (AsnReadVal(aip, settype, &av) <= 0)    /* read START_STRUCT */
      |     ^~
objpub.c:834:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  834 |  if (settype == PUB_SET_pub)
      |  ^~
objpub.c:901:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  901 |     if (AsnReadVal(aip, settype, &av) <= 0)   /* read END_STRUCT for SET OF */
      |     ^~
objpub.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  if (anp == NULL)
      |  ^~
objpub.c: In function ‘PubLabelUnique’:
objpub.c:1360:17: warning: unused variable ‘pmid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |                 ^~~~
objpub.c:1360:7: warning: unused variable ‘muid’ [-Wunused-variable]
 1360 |  Int4 muid = 0, pmid = 0;
      |       ^~~~
objpub.c: In function ‘PubSetAsnRead’:
objpub.c:876:16: warning: ‘func’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |         pnt = (* func)(aip, atp);
      |               ~^~~~~~~~~~~~~~~~~
objpub.c:887:25: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  887 |             cit->choice = choice;
      |             ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objres.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from objres.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objscoremat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objscoremat.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objscoremat.c: In function ‘PssmAsnRead’:
objscoremat.c:93:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   93 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmIntermediateDataAsnRead’:
objscoremat.c:339:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  339 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmFinalDataAsnRead’:
objscoremat.c:548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  548 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmParametersAsnRead’:
objscoremat.c:766:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  766 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘PssmWithParametersAsnRead’:
objscoremat.c:946:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  946 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘BlockPropertyAsnRead’:
objscoremat.c:1113:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1113 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreBlockAsnRead’:
objscoremat.c:1289:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1289 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘LoopConstraintAsnRead’:
objscoremat.c:1480:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1480 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘CoreDefAsnRead’:
objscoremat.c:1646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1646 |    AsnReadFunc func;
      |                ^~~~
objscoremat.c: In function ‘FormatRpsDbParametersAsnRead’:
objscoremat.c:1817:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1817 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from objseq.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objseq.c: In function ‘LinkageEvidenceAsnRead’:
objseq.c:1609:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1609 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqGapAsnRead’:
objseq.c:1764:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1764 |    AsnReadFunc func;
      |                ^~~~
objseq.c: In function ‘SeqDescrAsnWriteExtra’:
objseq.c:2035:48: warning: variable ‘had_anp’ set but not used [-Wunused-but-set-variable]
 2035 |     Boolean retval = FALSE, had_extra = FALSE, had_anp = FALSE;
      |                                                ^~~~~~~
objseq.c: In function ‘AnnotIdAsnWrite’:
objseq.c:4841:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4841 |         else
      |         ^~~~
objseq.c:4843:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4843 |             break;
      |             ^~~~~
objseq.c:4849:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 4849 |         else
      |         ^~~~
objseq.c:4851:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 4851 |             break;
      |             ^~~~~
objseq.c: In function ‘AnnotDescAsnWrite’:
objseq.c:5226:9: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 5226 |         else
      |         ^~~~
objseq.c:5228:12: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 5228 |            break;
      |            ^~~~~
objseq.c: In function ‘BioseqAsnRead’:
objseq.c:977:21: warning: ‘osp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  977 |         else if (osp->load_by_id)   /* don't load it */
      |                  ~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objblock.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objblock.h:70,
                 from objblock.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblock.c: In function ‘EMBLBlockFree’:
objblock.c:900:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  900 |     if (ebp == NULL)
      |     ^~
objblock.c:903:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  903 |  DateFree(ebp->creation_date);
      |  ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcode.c
objcode.c:48:51: warning: "/*" within comment [-Wcomment]
   48 | * environment variables to allow reading from data/*.val, replaced tabs in source code with spaces
      |                                                    
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objcode.h:64,
                 from objcode.c:105:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsset.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from objsset.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsset.c: In function ‘BioseqSetFree’:
objsset.c:363:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  363 |     if (bsp == NULL)
      |     ^~
objsset.c:366:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  366 |  if (bsp->idx.parentptr == NULL || bsp->idx.parenttype == OBJ_SEQSUB) {
      |  ^~
objsset.c: In function ‘SeqEntryFree’:
objsset.c:878:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  878 |     else if (sep->choice == 2)
      |          ^~
objsset.c:881:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  881 |  return (SeqEntryPtr)MemFree(sep);
      |  ^~~~~~
objsset.c: In function ‘SeqEntryFreeComponents’:
objsset.c:898:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  898 |     else if (sep->choice == 2)
      |          ^~
objsset.c:901:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  901 |  return sep;
      |  ^~~~~~
objsset.c: In function ‘SeqEntryAsnGet’:
objsset.c:1075:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1075 |     if (retcode == 1)   /* just after a Bioseq */
      |     ^~
objsset.c:1077:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1077 |  av.ptrvalue = (Pointer) osp;
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objsub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnsubmt.h:9,
                 from objsub.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objsub.c: In function ‘SubmitAsnLoad’:
objsub.c:341:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  341 |     if (loaded)
      |     ^~
objsub.c:344:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  344 |  if (! SeqSetAsnLoad ())
      |  ^~
objsub.c:347:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  347 |     if (AsnLoad())
      |     ^~
objsub.c:350:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  350 |  ObjMgrTypeLoad(OBJ_SEQSUB, "Seq-submit", seqsubtypename, "Sequence Data Submission",
      |  ^~~~~~~~~~~~~~
objsub.c: In function ‘SeqSubmitAsnWrite’:
objsub.c:455:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  455 |     if (atp == NULL)
      |     ^~
objsub.c:458:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  458 |  if (ssp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:462:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  462 |     if (! AsnOpenStruct(aip, atp, (Pointer)ssp))
      |     ^~
objsub.c:465:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  465 |  if (! SubmitBlockAsnWrite(ssp->sub, aip, SEQ_SUBMIT_sub)) goto erret;
      |  ^~
objsub.c: In function ‘SeqSubmitAsnRead’:
objsub.c:539:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  539 |     if (atp == NULL)
      |     ^~
objsub.c:542:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  542 |  ssp = SeqSubmitNew();
      |  ^~~
objsub.c:543:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  543 |     if (ssp == NULL)
      |     ^~
objsub.c:546:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  546 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘SubmitBlockAsnWrite’:
objsub.c:682:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  682 |     if (atp == NULL)
      |     ^~
objsub.c:685:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  685 |  if (sbp == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:689:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  689 |     if (! AsnOpenStruct(aip, atp, (Pointer)sbp))
      |     ^~
objsub.c:692:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  692 |  if (! ContactInfoAsnWrite(sbp->contact, aip, SUBMIT_BLOCK_contact))
      |  ^~
objsub.c: In function ‘SubmitBlockAsnRead’:
objsub.c:770:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  770 |     if (atp == NULL)
      |     ^~
objsub.c:773:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  773 |  oldatp = atp;
      |  ^~~~~~
objsub.c:775:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  775 |     if (sbp == NULL)
      |     ^~
objsub.c:778:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  778 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
objsub.c: In function ‘ContactInfoAsnWrite’:
objsub.c:942:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  942 |     if (atp == NULL)
      |     ^~
objsub.c:945:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  945 |  if (cip == NULL) { AsnNullValueMsg(aip, atp); goto erret; }
      |  ^~
objsub.c:949:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  949 |     if (! AsnOpenStruct(aip, atp, (Pointer)cip))
      |     ^~
objsub.c:952:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  952 |  if (cip->name != NULL)
      |  ^~
objsub.c: In function ‘ContactInfoAsnRead’:
objsub.c:1068:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1068 |     if (atp == NULL)
      |     ^~
objsub.c:1070:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1070 |  oldatp = atp;
      |  ^~~~~~
objsub.c:1073:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1073 |     if (cip == NULL)
      |     ^~
objsub.c:1076:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1076 |  if (AsnReadVal(aip, atp, &av) <= 0)    /* read the start struct */
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from objprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objprt.c: In function ‘PrintFormBooleanAsnRead’:
objprt.c:853:22: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  853 |  PrintFormBooleanPtr ptr;
      |                      ^~~
objprt.c: In function ‘PrintFormEnumAsnRead’:
objprt.c:969:19: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  969 |  PrintFormEnumPtr ptr;
      |                   ^~~
objprt.c: In function ‘PrintFormTextAsnRead’:
objprt.c:1086:19: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1086 |  PrintFormTextPtr ptr;
      |                   ^~~
objprt.c: In function ‘UserFormatAsnRead’:
objprt.c:1192:16: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1192 |  UserFormatPtr ptr;
      |                ^~~
objprt.c: In function ‘PrintFormAsnRead’:
objprt.c:600:8: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  600 |  vnp = PrintFormFree(vnp);
      |        ^~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormatAsnRead’:
objprt.c:379:17: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  379 |  PrintFormatPtr ptr;
      |                 ^~~
objprt.c: In function ‘PrintTemplateAsnRead’:
objprt.c:250:6: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  250 |  ptr=PrintTemplateFree(ptr);
      |      ^~~~~~~~~~~~~~~~~~~~~~
objprt.c: In function ‘PrintFormBlockAsnRead’:
objprt.c:707:20: warning: ‘ptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  707 |  PrintFormBlockPtr ptr;
      |                    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objfdef.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objfeat.h:48,
                 from ../include/objfdef.h:48,
                 from objfdef.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objalignloc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objalignloc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objalignloc.c: In function ‘AlignLocSetAsnRead’:
objalignloc.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c: In function ‘Loc_locFree’:
objalignloc.c:196:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  196 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  233 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:232:12: warning: unused variable ‘isError’ [-Wunused-variable]
  232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘Loc_locAsnRead’:
objalignloc.c:313:12: warning: unused variable ‘isError’ [-Wunused-variable]
  313 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdFree’:
objalignloc.c:527:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  527 |    Pointer pnt;
      |            ^~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:559:12: warning: unused variable ‘isError’ [-Wunused-variable]
  559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignBoxAsnRead’:
objalignloc.c:750:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  750 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:749:12: warning: unused variable ‘isError’ [-Wunused-variable]
  749 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignRowsAsnRead’:
objalignloc.c:932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  932 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:931:12: warning: unused variable ‘isError’ [-Wunused-variable]
  931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignColumnsAsnRead’:
objalignloc.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objalignloc.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objalignloc.c: In function ‘AlignIdAsnRead’:
objalignloc.c:615:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  615 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c: In function ‘AlignLocAsnRead’:
objalignloc.c:370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objalignloc.c:312:10: note: ‘choice’ was declared here
  312 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtable.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtable.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtable.c: In function ‘SeqTableColumnInfoAsnRead’:
objtable.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objtable.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableColumnAsnRead’:
objtable.c:269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  269 |    AsnReadFunc func;
      |                ^~~~
objtable.c:268:12: warning: unused variable ‘isError’ [-Wunused-variable]
  268 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableAsnRead’:
objtable.c:474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  474 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonStringTableAsnRead’:
objtable.c:657:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  657 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘CommonBytesTableAsnRead’:
objtable.c:819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  819 |    AsnReadFunc func;
      |                ^~~~
objtable.c: In function ‘SeqTableSingleDataFree’:
objtable.c:1225:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1225 |    Pointer pnt;
      |            ^~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtable.c: In function ‘SeqTableMultiDataAsnRead’:
objtable.c:1111:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1111 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSingleDataAsnRead’:
objtable.c:1354:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1354 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtable.c: In function ‘SeqTableSparseIndexAsnRead’:
objtable.c:1559:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1559 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objpubme.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objpubme.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objpubme.c: In function ‘PubmedEntryAsnRead’:
objpubme.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objpubme.c: In function ‘PubmedUrlAsnRead’:
objpubme.c:288:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  288 |    AsnReadFunc func;
      |                ^~~~
objpubme.c:287:12: warning: unused variable ‘isError’ [-Wunused-variable]
  287 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmdrs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmdrs.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmdrs.c: In function ‘MedlarsEntryAsnRead’:
objmdrs.c:85:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   85 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c: In function ‘MedlarsRecordAsnRead’:
objmdrs.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objmdrs.c:258:12: warning: unused variable ‘isError’ [-Wunused-variable]
  258 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objproj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objproj.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objproj.c: In function ‘ProjectAsnRead’:
objproj.c:116:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  116 |    AsnReadFunc func;
      |                ^~~~
objproj.c:115:12: warning: unused variable ‘isError’ [-Wunused-variable]
  115 |    Boolean isError = FALSE;
      |            ^~~~~~~
objproj.c: In function ‘ProjectDescrAsnRead’:
objproj.c:720:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  720 |    AsnReadFunc func;
      |                ^~~~
objproj.c: In function ‘ProjdescFree’:
objproj.c:857:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  857 |    Pointer pnt;
      |            ^~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:898:12: warning: unused variable ‘isError’ [-Wunused-variable]
  898 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
objproj.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/mmdbapi.h:92,
                 from ../include/mapproj.h:45,
                 from objproj.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objproj.c: In function ‘ProjdescAsnRead’:
objproj.c:958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objgbseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objgbseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objgbseq.c: In function ‘GBSetAsnRead’:
objgbseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objgbseq.c: In function ‘GBSeqAsnRead’:
objgbseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBReferenceAsnRead’:
objgbseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBCommentAsnRead’:
objgbseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBStrucCommentAsnRead’:
objgbseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureAsnRead’:
objgbseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBFeatureSetAsnRead’:
objgbseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBAltSeqDataAsnRead’:
objgbseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c: In function ‘GBXrefAsnRead’:
objgbseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBStrucCommentItemAsnRead’:
objgbseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBIntervalAsnRead’:
objgbseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBQualifierAsnRead’:
objgbseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objgbseq.c: In function ‘GBAltSeqItemAsnRead’:
objgbseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objgbseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtseq.c: In function ‘TSeqAsnRead’:
objtseq.c:89:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   89 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘TSeqSetAsnRead’:
objtseq.c:325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  325 |    AsnReadFunc func;
      |                ^~~~
objtseq.c: In function ‘BioseqToTSeq’:
objtseq.c:452:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  452 |  Uint1 seqcode;
      |        ^~~~~~~
objtseq.c: In function ‘BioseqToMiniTSeq’:
objtseq.c:564:8: warning: variable ‘seqcode’ set but not used [-Wunused-but-set-variable]
  564 |  Uint1 seqcode;
      |        ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objinsdseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objinsdseq.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objinsdseq.c: In function ‘INSDSetAsnRead’:
objinsdseq.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:66:12: warning: unused variable ‘av’ [-Wunused-variable]
   66 |    DataVal av;
      |            ^~
objinsdseq.c: In function ‘INSDSeqAsnRead’:
objinsdseq.c:235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  235 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDReferenceAsnRead’:
objinsdseq.c:742:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  742 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDCommentAsnRead’:
objinsdseq.c:983:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  983 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDStrucCommentAsnRead’:
objinsdseq.c:1150:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1150 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureAsnRead’:
objinsdseq.c:1321:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1321 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDFeatureSetAsnRead’:
objinsdseq.c:1548:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1548 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDAltSeqDataAsnRead’:
objinsdseq.c:1715:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1715 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c: In function ‘INSDXrefAsnRead’:
objinsdseq.c:1882:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1882 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:1881:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1881 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDStrucCommentItemAsnRead’:
objinsdseq.c:2053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2053 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDIntervalAsnRead’:
objinsdseq.c:2233:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2233 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDQualifierAsnRead’:
objinsdseq.c:2447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2447 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2446:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objinsdseq.c: In function ‘INSDAltSeqItemAsnRead’:
objinsdseq.c:2622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2622 |    AsnReadFunc func;
      |                ^~~~
objinsdseq.c:2621:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2621 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmacro.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmacro.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmacro.c: In function ‘AECRActionAsnRead’:
objmacro.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseActionAsnRead’:
objmacro.c:272:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  272 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:271:12: warning: unused variable ‘isError’ [-Wunused-variable]
  271 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionListAsnRead’:
objmacro.c:478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  478 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:475:12: warning: unused variable ‘av’ [-Wunused-variable]
  475 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SuspectRuleSetAsnRead’:
objmacro.c:595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  595 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:592:12: warning: unused variable ‘av’ [-Wunused-variable]
  592 |    DataVal av;
      |            ^~
objmacro.c: In function ‘WordSubstitutionAsnRead’:
objmacro.c:731:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  731 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘WordSubstitutionSetAsnRead’:
objmacro.c:899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:896:12: warning: unused variable ‘av’ [-Wunused-variable]
  896 |    DataVal av;
      |            ^~
objmacro.c: In function ‘StringConstraintAsnRead’:
objmacro.c:1045:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1045 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1044:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1044 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StringConstraintSetAsnRead’:
objmacro.c:1307:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1307 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1304:12: warning: unused variable ‘av’ [-Wunused-variable]
 1304 |    DataVal av;
      |            ^~
objmacro.c: In function ‘LocationPosConstraintFree’:
objmacro.c:1403:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1403 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1432:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1432 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationConstraintAsnRead’:
objmacro.c:1633:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1633 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1632:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1632 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValAsnRead’:
objmacro.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalValChoiceFree’:
objmacro.c:1979:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1979 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualLegalValChoiceAsnRead’:
objmacro.c:2011:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2011 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatQualLegalSetAsnRead’:
objmacro.c:2165:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2165 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2162:12: warning: unused variable ‘av’ [-Wunused-variable]
 2162 |    DataVal av;
      |            ^~
objmacro.c: In function ‘FeatQualChoiceFree’:
objmacro.c:2261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2293:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2293 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldAsnRead’:
objmacro.c:2474:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2474 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2473:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2473 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldLegalAsnRead’:
objmacro.c:2641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2641 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FeatureFieldPairAsnRead’:
objmacro.c:2807:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2807 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:2806:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2806 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaFeatTypeFree’:
objmacro.c:2950:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2950 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:2982:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2982 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualAsnRead’:
objmacro.c:3232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RnaQualPairAsnRead’:
objmacro.c:3400:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3400 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3399:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3399 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualPairAsnRead’:
objmacro.c:3576:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3576 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3575:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3575 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceFree’:
objmacro.c:3704:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3704 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3733:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3733 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualTextValAsnRead’:
objmacro.c:3950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3950 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:3949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValChoiceFree’:
objmacro.c:4080:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4080 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4112:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4112 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualValSetAsnRead’:
objmacro.c:4310:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4310 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4307:12: warning: unused variable ‘av’ [-Wunused-variable]
 4307 |    DataVal av;
      |            ^~
objmacro.c: In function ‘CDSGeneProtFieldPairAsnRead’:
objmacro.c:4442:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4442 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4441:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4441 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldFree’:
objmacro.c:4570:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4570 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4599:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMoleculePairAsnRead’:
objmacro.c:4826:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4826 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4825:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4825 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTechniquePairAsnRead’:
objmacro.c:4990:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4990 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:4989:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4989 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoCompletednessPairAsnRead’:
objmacro.c:5154:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5154 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5153:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5153 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoMolClassPairAsnRead’:
objmacro.c:5318:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5318 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5317:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5317 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoTopologyPairAsnRead’:
objmacro.c:5482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5482 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoStrandPairAsnRead’:
objmacro.c:5646:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5646 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:5645:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5645 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldPairFree’:
objmacro.c:5774:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5774 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5821:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5821 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoFieldListAsnRead’:
objmacro.c:6015:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6015 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6012:12: warning: unused variable ‘av’ [-Wunused-variable]
 6012 |    DataVal av;
      |            ^~
objmacro.c: In function ‘MolinfoFieldConstraintAsnRead’:
objmacro.c:6149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6149 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldFree’:
objmacro.c:6280:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6280 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6312:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6312 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘StructuredCommentFieldPairAsnRead’:
objmacro.c:6508:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6508 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6507:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6507 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘DBLinkFieldPairAsnRead’:
objmacro.c:6678:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6678 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6677:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6677 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldConstraintAsnRead’:
objmacro.c:6843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6843 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:6842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeFree’:
objmacro.c:6974:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 6974 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7003:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7003 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintAsnRead’:
objmacro.c:7220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7220 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7219:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7219 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PublicationConstraintAsnRead’:
objmacro.c:7389:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7389 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7388:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7388 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceConstraintAsnRead’:
objmacro.c:7571:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7571 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7570:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7570 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtPseudoConstraintAsnRead’:
objmacro.c:7763:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 7763 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:7762:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7762 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldFree’:
objmacro.c:7891:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 7891 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CDSGeneProtConstraintFieldAsnRead’:
objmacro.c:7920:12: warning: unused variable ‘isError’ [-Wunused-variable]
 7920 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CDSGeneProtQualConstraintAsnRead’:
objmacro.c:8095:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8095 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8094:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8094 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldConstraintAsnRead’:
objmacro.c:8279:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 8279 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:8278:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8278 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldTypeFree’:
objmacro.c:8413:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8413 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8457:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintFree’:
objmacro.c:8666:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8666 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8695:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘QuantityConstraintFree’:
objmacro.c:8875:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 8875 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8904:12: warning: unused variable ‘isError’ [-Wunused-variable]
 8904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceConstraintAsnRead’:
objmacro.c:9104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9104 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TranslationConstraintAsnRead’:
objmacro.c:9332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9331:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceFree’:
objmacro.c:9487:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9487 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9549:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9549 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConstraintChoiceSetAsnRead’:
objmacro.c:9783:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 9783 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:9780:12: warning: unused variable ‘av’ [-Wunused-variable]
 9780 |    DataVal av;
      |            ^~
objmacro.c: In function ‘TextMarkerFree’:
objmacro.c:9879:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 9879 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9911:12: warning: unused variable ‘isError’ [-Wunused-variable]
 9911 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextPortionAsnRead’:
objmacro.c:10109:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10109 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10108:12: warning: unused variable ‘isError’ [-Wunused-variable]
10108 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldEditAsnRead’:
objmacro.c:10328:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10328 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10327:12: warning: unused variable ‘isError’ [-Wunused-variable]
10327 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FieldPairTypeFree’:
objmacro.c:10478:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
10478 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10528:12: warning: unused variable ‘isError’ [-Wunused-variable]
10528 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyActionAsnRead’:
objmacro.c:10747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10746:12: warning: unused variable ‘isError’ [-Wunused-variable]
10746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditActionAsnRead’:
objmacro.c:10927:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
10927 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:10926:12: warning: unused variable ‘isError’ [-Wunused-variable]
10926 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformFree’:
objmacro.c:11061:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
11061 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11096:12: warning: unused variable ‘isError’ [-Wunused-variable]
11096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TextTransformSetAsnRead’:
objmacro.c:11269:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11269 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11266:12: warning: unused variable ‘av’ [-Wunused-variable]
11266 |    DataVal av;
      |            ^~
objmacro.c: In function ‘ConvertActionAsnRead’:
objmacro.c:11405:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11405 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11404:12: warning: unused variable ‘isError’ [-Wunused-variable]
11404 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CopyActionAsnRead’:
objmacro.c:11600:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11600 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11599:12: warning: unused variable ‘isError’ [-Wunused-variable]
11599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SwapActionAsnRead’:
objmacro.c:11768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11768 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11767:12: warning: unused variable ‘isError’ [-Wunused-variable]
11767 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AECRParseActionAsnRead’:
objmacro.c:11932:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
11932 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:11931:12: warning: unused variable ‘isError’ [-Wunused-variable]
11931 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveActionAsnRead’:
objmacro.c:12151:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12151 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12150:12: warning: unused variable ‘isError’ [-Wunused-variable]
12150 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveOutsideActionAsnRead’:
objmacro.c:12312:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12312 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12311:12: warning: unused variable ‘isError’ [-Wunused-variable]
12311 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ActionChoiceFree’:
objmacro.c:12455:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12455 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12508:12: warning: unused variable ‘isError’ [-Wunused-variable]
12508 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceFree’:
objmacro.c:12697:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
12697 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12726:12: warning: unused variable ‘isError’ [-Wunused-variable]
12726 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcOrgAsnRead’:
objmacro.c:12911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
12911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:12910:12: warning: unused variable ‘isError’ [-Wunused-variable]
12910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdFree’:
objmacro.c:13042:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13042 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13074:12: warning: unused variable ‘isError’ [-Wunused-variable]
13074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseSrcFree’:
objmacro.c:13232:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13232 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13270:12: warning: unused variable ‘isError’ [-Wunused-variable]
13270 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDstOrgAsnRead’:
objmacro.c:13526:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13526 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13525:12: warning: unused variable ‘isError’ [-Wunused-variable]
13525 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ParseDestFree’:
objmacro.c:13657:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
13657 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13695:12: warning: unused variable ‘isError’ [-Wunused-variable]
13695 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationIntervalAsnRead’:
objmacro.c:13905:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
13905 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:13904:12: warning: unused variable ‘isError’ [-Wunused-variable]
13904 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationChoiceFree’:
objmacro.c:14033:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14033 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14065:12: warning: unused variable ‘isError’ [-Wunused-variable]
14065 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SequenceListAsnRead’:
objmacro.c:14241:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14241 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14238:12: warning: unused variable ‘av’ [-Wunused-variable]
14238 |    DataVal av;
      |            ^~
objmacro.c: In function ‘SequenceListChoiceFree’:
objmacro.c:14337:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
14337 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14369:12: warning: unused variable ‘isError’ [-Wunused-variable]
14369 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyFeatureActionAsnRead’:
objmacro.c:14560:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14560 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14559:12: warning: unused variable ‘isError’ [-Wunused-variable]
14559 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveFeatureActionAsnRead’:
objmacro.c:14827:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14827 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14826:12: warning: unused variable ‘isError’ [-Wunused-variable]
14826 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFromCDSOptionsAsnRead’:
objmacro.c:14994:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
14994 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:14993:12: warning: unused variable ‘isError’ [-Wunused-variable]
14993 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsFree’:
objmacro.c:15131:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15131 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureSrcOptionsAsnRead’:
objmacro.c:15163:12: warning: unused variable ‘isError’ [-Wunused-variable]
15163 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RegionTypeAsnRead’:
objmacro.c:15332:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15332 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15331:12: warning: unused variable ‘isError’ [-Wunused-variable]
15331 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsFree’:
objmacro.c:15451:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
15451 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15486:12: warning: unused variable ‘isError’ [-Wunused-variable]
15486 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ConvertFeatureActionAsnRead’:
objmacro.c:15702:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15702 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15701:12: warning: unused variable ‘isError’ [-Wunused-variable]
15701 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditLocationStrandAsnRead’:
objmacro.c:15911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
15911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:15910:12: warning: unused variable ‘isError’ [-Wunused-variable]
15910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial5SetActionAsnRead’:
objmacro.c:16075:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16075 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16074:12: warning: unused variable ‘isError’ [-Wunused-variable]
16074 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘Partial3SetActionAsnRead’:
objmacro.c:16239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16238:12: warning: unused variable ‘isError’ [-Wunused-variable]
16238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘PartialBothSetActionAsnRead’:
objmacro.c:16403:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16403 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16402:12: warning: unused variable ‘isError’ [-Wunused-variable]
16402 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ExtendToFeatureAsnRead’:
objmacro.c:16568:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
16568 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:16567:12: warning: unused variable ‘isError’ [-Wunused-variable]
16567 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘LocationEditTypeFree’:
objmacro.c:16708:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
16708 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16755:12: warning: unused variable ‘isError’ [-Wunused-variable]
16755 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘EditFeatureLocationActionAsnRead’:
objmacro.c:17032:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17032 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17031:12: warning: unused variable ‘isError’ [-Wunused-variable]
17031 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MolinfoBlockAsnRead’:
objmacro.c:17232:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17232 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17231:12: warning: unused variable ‘isError’ [-Wunused-variable]
17231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDescriptorActionAsnRead’:
objmacro.c:17415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17415 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17414:12: warning: unused variable ‘isError’ [-Wunused-variable]
17414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutodefActionAsnRead’:
objmacro.c:17584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17584 |    AsnReadFunc func;
      |                ^~~~
objmacro.c: In function ‘FixPubCapsActionAsnRead’:
objmacro.c:17758:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17758 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17757:12: warning: unused variable ‘isError’ [-Wunused-variable]
17757 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SortFieldsActionAsnRead’:
objmacro.c:17963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
17963 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:17962:12: warning: unused variable ‘isError’ [-Wunused-variable]
17962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixAuthorCapsAsnRead’:
objmacro.c:18142:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18142 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18141:12: warning: unused variable ‘isError’ [-Wunused-variable]
18141 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixCapsActionFree’:
objmacro.c:18261:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18261 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18296:12: warning: unused variable ‘isError’ [-Wunused-variable]
18296 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixFormatActionFree’:
objmacro.c:18470:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
18470 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18499:12: warning: unused variable ‘isError’ [-Wunused-variable]
18499 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveDuplicateFeatureActionAsnRead’:
objmacro.c:18705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18705 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18704:12: warning: unused variable ‘isError’ [-Wunused-variable]
18704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘GeneXrefTypeAsnRead’:
objmacro.c:18899:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
18899 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:18898:12: warning: unused variable ‘isError’ [-Wunused-variable]
18898 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘XrefTypeFree’:
objmacro.c:19036:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19036 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘XrefTypeAsnRead’:
objmacro.c:19068:12: warning: unused variable ‘isError’ [-Wunused-variable]
19068 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveXrefsActionAsnRead’:
objmacro.c:19239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19238:12: warning: unused variable ‘isError’ [-Wunused-variable]
19238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MakeGeneXrefActionAsnRead’:
objmacro.c:19410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19410 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19409:12: warning: unused variable ‘isError’ [-Wunused-variable]
19409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AuthorFixActionAsnRead’:
objmacro.c:19578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19578 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19577:12: warning: unused variable ‘isError’ [-Wunused-variable]
19577 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateSequencesActionAsnRead’:
objmacro.c:19747:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
19747 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:19746:12: warning: unused variable ‘isError’ [-Wunused-variable]
19746 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcFree’:
objmacro.c:19877:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
19877 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19909:12: warning: unused variable ‘isError’ [-Wunused-variable]
19909 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘CreateTSAIdsActionAsnRead’:
objmacro.c:20092:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20092 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20091:12: warning: unused variable ‘isError’ [-Wunused-variable]
20091 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AutofixActionAsnRead’:
objmacro.c:20274:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20274 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20273:12: warning: unused variable ‘isError’ [-Wunused-variable]
20273 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘FixSetsActionFree’:
objmacro.c:20395:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20395 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20424:12: warning: unused variable ‘isError’ [-Wunused-variable]
20424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchTypeFree’:
objmacro.c:20582:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
20582 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20614:12: warning: unused variable ‘isError’ [-Wunused-variable]
20614 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘TableMatchAsnRead’:
objmacro.c:20873:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
20873 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:20872:12: warning: unused variable ‘isError’ [-Wunused-variable]
20872 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableExtraDataFree’:
objmacro.c:21004:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
21004 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ApplyTableExtraDataAsnRead’:
objmacro.c:21033:12: warning: unused variable ‘isError’ [-Wunused-variable]
21033 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ApplyTableActionAsnRead’:
objmacro.c:21210:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21210 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21209:12: warning: unused variable ‘isError’ [-Wunused-variable]
21209 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddFileActionAsnRead’:
objmacro.c:21411:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21411 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21410:12: warning: unused variable ‘isError’ [-Wunused-variable]
21410 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AddDescriptorListActionAsnRead’:
objmacro.c:21582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21582 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21581:12: warning: unused variable ‘isError’ [-Wunused-variable]
21581 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RemoveSequencesActionAsnRead’:
objmacro.c:21753:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21753 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21752:12: warning: unused variable ‘isError’ [-Wunused-variable]
21752 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘UpdateReplacedEcNumbersActionAsnRead’:
objmacro.c:21911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
21911 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:21910:12: warning: unused variable ‘isError’ [-Wunused-variable]
21910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘RetranslateCdsActionAsnRead’:
objmacro.c:22084:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22084 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22083:12: warning: unused variable ‘isError’ [-Wunused-variable]
22083 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘AdjustFeaturesForGapsActionAsnRead’:
objmacro.c:22239:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
22239 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:22238:12: warning: unused variable ‘isError’ [-Wunused-variable]
22238 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘MacroActionChoiceFree’:
objmacro.c:22412:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
22412 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22522:12: warning: unused variable ‘isError’ [-Wunused-variable]
22522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SearchFuncFree’:
objmacro.c:23116:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23116 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23154:12: warning: unused variable ‘isError’ [-Wunused-variable]
23154 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SimpleReplaceAsnRead’:
objmacro.c:23425:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23425 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23424:12: warning: unused variable ‘isError’ [-Wunused-variable]
23424 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceFuncFree’:
objmacro.c:23564:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
23564 |    Pointer pnt;
      |            ^~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23599:12: warning: unused variable ‘isError’ [-Wunused-variable]
23599 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘ReplaceRuleAsnRead’:
objmacro.c:23781:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23781 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23780:12: warning: unused variable ‘isError’ [-Wunused-variable]
23780 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SuspectRuleAsnRead’:
objmacro.c:23955:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
23955 |    AsnReadFunc func;
      |                ^~~~
objmacro.c:23954:12: warning: unused variable ‘isError’ [-Wunused-variable]
23954 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmacro.c: In function ‘SourceQualChoiceAsnRead’:
objmacro.c:3806:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3806 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SourceQualValChoiceAsnRead’:
objmacro.c:4182:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4182 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldAsnRead’:
objmacro.c:4679:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4679 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MolinfoFieldPairAsnRead’:
objmacro.c:5883:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5883 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘StructuredCommentFieldAsnRead’:
objmacro.c:6371:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6371 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldTypeAsnRead’:
objmacro.c:8543:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8543 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConstraintChoiceAsnRead’:
objmacro.c:9631:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9631 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextTransformAsnRead’:
objmacro.c:11149:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11149 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcGeneralIdAsnRead’:
objmacro.c:13133:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13133 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixCapsActionAsnRead’:
objmacro.c:18363:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18363 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixFormatActionAsnRead’:
objmacro.c:18565:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
18565 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FixSetsActionAsnRead’:
objmacro.c:20483:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20483 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘MacroActionChoiceAsnRead’:
objmacro.c:22829:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22829 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationPosConstraintAsnRead’:
objmacro.c:1491:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1491 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FeatQualChoiceAsnRead’:
objmacro.c:2342:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2342 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘RnaFeatTypeAsnRead’:
objmacro.c:3076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘PubFieldSpecialConstraintTypeAsnRead’:
objmacro.c:7076:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7076 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceConstraintMolTypeConstraintAsnRead’:
objmacro.c:8768:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8768 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘QuantityConstraintAsnRead’:
objmacro.c:8963:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8963 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TextMarkerAsnRead’:
objmacro.c:9970:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9970 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘FieldPairTypeAsnRead’:
objmacro.c:10594:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10594 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ActionChoiceAsnRead’:
objmacro.c:12578:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12578 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcOrgChoiceAsnRead’:
objmacro.c:12778:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12778 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseSrcAsnRead’:
objmacro.c:13365:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13365 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ParseDestAsnRead’:
objmacro.c:13762:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13762 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationChoiceAsnRead’:
objmacro.c:14121:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14121 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SequenceListChoiceAsnRead’:
objmacro.c:14418:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14418 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ConvertFeatureDstOptionsAsnRead’:
objmacro.c:15556:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
15556 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘LocationEditTypeAsnRead’:
objmacro.c:16859:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16859 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘CreateTSAIdsSrcAsnRead’:
objmacro.c:19958:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
19958 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘TableMatchTypeAsnRead’:
objmacro.c:20712:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20712 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘SearchFuncAsnRead’:
objmacro.c:23259:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23259 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmacro.c: In function ‘ReplaceFuncAsnRead’:
objmacro.c:23648:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23648 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objent2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objent2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objent2.c: In function ‘Entrez2IdListAsnRead’:
objent2.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objent2.c:86:12: warning: unused variable ‘isError’ [-Wunused-variable]
   86 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanExpAsnRead’:
objent2.c:277:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  277 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanElementFree’:
objent2.c:416:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  416 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:457:12: warning: unused variable ‘isError’ [-Wunused-variable]
  457 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LimitsAsnRead’:
objent2.c:666:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  666 |    AsnReadFunc func;
      |                ^~~~
objent2.c:665:12: warning: unused variable ‘isError’ [-Wunused-variable]
  665 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanTermAsnRead’:
objent2.c:844:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  844 |    AsnReadFunc func;
      |                ^~~~
objent2.c:843:12: warning: unused variable ‘isError’ [-Wunused-variable]
  843 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2RequestAsnRead’:
objent2.c:1041:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1041 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1040:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1040 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2RequestFree’:
objent2.c:1203:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1203 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1256:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1256 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2EvalBooleanAsnRead’:
objent2.c:1493:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1493 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1492:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1492 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermQueryAsnRead’:
objent2.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1669:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1669 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermPosAsnRead’:
objent2.c:1849:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1849 |    AsnReadFunc func;
      |                ^~~~
objent2.c:1848:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1848 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2HierQueryAsnRead’:
objent2.c:2036:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2036 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2035:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2035 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2GetLinksAsnRead’:
objent2.c:2224:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2224 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2223:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2223 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2IdAsnRead’:
objent2.c:2419:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2419 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2418:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2418 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DtFilterAsnRead’:
objent2.c:2584:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2584 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2583:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2583 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2ReplyAsnRead’:
objent2.c:2762:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2762 |    AsnReadFunc func;
      |                ^~~~
objent2.c:2761:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2761 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘E2ReplyFree’:
objent2.c:2935:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2935 |    Pointer pnt;
      |            ^~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:2991:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2991 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2InfoAsnRead’:
objent2.c:3237:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3237 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2BooleanReplyAsnRead’:
objent2.c:3409:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3409 |    AsnReadFunc func;
      |                ^~~~
objent2.c:3408:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3408 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumListAsnRead’:
objent2.c:3587:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3587 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2TermListAsnRead’:
objent2.c:3749:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3749 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2HierNodeAsnRead’:
objent2.c:3922:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3922 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2LinkSetAsnRead’:
objent2.c:4122:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4122 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4121:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4121 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountListAsnRead’:
objent2.c:4299:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4299 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DbInfoAsnRead’:
objent2.c:4466:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4466 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2FieldInfoAsnRead’:
objent2.c:4706:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4706 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4705:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4705 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkInfoAsnRead’:
objent2.c:4950:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4950 |    AsnReadFunc func;
      |                ^~~~
objent2.c:4949:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4949 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumFieldInfoAsnRead’:
objent2.c:5149:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5149 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5148:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5148 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2DocsumAsnRead’:
objent2.c:5325:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5325 |    AsnReadFunc func;
      |                ^~~~
objent2.c: In function ‘Entrez2DocsumDataAsnRead’:
objent2.c:5488:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5488 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5487:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5487 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2TermAsnRead’:
objent2.c:5655:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5655 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5654:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5654 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2LinkCountAsnRead’:
objent2.c:5838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5838 |    AsnReadFunc func;
      |                ^~~~
objent2.c:5837:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5837 |    Boolean isError = FALSE;
      |            ^~~~~~~
objent2.c: In function ‘Entrez2BooleanElementAsnRead’:
objent2.c:524:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  524 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2RequestAsnRead’:
objent2.c:1333:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1333 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objent2.c: In function ‘E2ReplyAsnRead’:
objent2.c:3075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ent2api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ent2api.h:45,
                 from ent2api.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pmfapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pmfapi.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pmfapi.c:2813:24: warning: ‘SortByInt4’ defined but not used [-Wunused-function]
 2813 | static int LIBCALLBACK SortByInt4 (VoidPtr vp1, VoidPtr vp2)
      |                        ^~~~~~~~~~
pmfapi.c: In function ‘ConfirmAccStrInSep’:
pmfapi.c:1314:3: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1314 |   SeqIdFree (tmp);
      |   ^~~~~~~~~~~~~~~
pmfapi.c: In function ‘PubMedSynchronousQuery’:
pmfapi.c:1224:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1224 |     printf ("PubMedWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryEx’:
pmfapi.c:1479:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1479 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQueryTI’:
pmfapi.c:1663:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1663 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘PubSeqSynchronousQuerySRA’:
pmfapi.c:1744:58: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1744 |     printf ("PubSeqWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiRevHistSynchronousQuery’:
pmfapi.c:1817:61: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1817 |     printf ("GiRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                   ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiAccVerSynchronousQuery’:
pmfapi.c:1869:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1869 |     printf ("GiAccVerWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnRevHistSynchronousQuery’:
pmfapi.c:1920:63: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1920 |     printf ("AccnRevHistWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                     ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘GiSeqIdSetSynchronousQuery’:
pmfapi.c:1971:62: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1971 |     printf ("GiSeqIdSetWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                    ~~~~~~~~~~^~~~~~~~~~~~
pmfapi.c: In function ‘AccnListSynchronousQuery’:
pmfapi.c:2021:60: warning: ‘starttime’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2021 |     printf ("AccnListWaitForReply %ld\n", (long) (stoptime - starttime));
      |                                                  ~~~~~~~~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objtax3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax3.c: In function ‘Taxon3RequestAsnRead’:
objtax3.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RequestFree’:
objtax3.c:200:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  200 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘SequenceOfIntAsnRead’:
objtax3.c:418:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  418 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Taxon3ReplyAsnRead’:
objtax3.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3ReplyFree’:
objtax3.c:661:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  661 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3ErrorAsnRead’:
objtax3.c:872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  872 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3DataAsnRead’:
objtax3.c:1072:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1072 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘Value_valueFree’:
objtax3.c:1253:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1253 |    Pointer pnt;
      |            ^~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1283:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1283 |    AsnReadFunc func;
      |                ^~~~
objtax3.c: In function ‘T3RefreshFlagsAsnRead’:
objtax3.c:1608:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1608 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
objtax3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objtax3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objtax3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objtax3.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objtax3.c: In function ‘T3RequestAsnRead’:
objtax3.c:297:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  297 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3ReplyAsnRead’:
objtax3.c:741:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  741 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c: In function ‘T3StatusFlagsAsnRead’:
objtax3.c:1421:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1421 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax3.c:1362:10: note: ‘choice’ was declared here
 1362 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tax3api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tax3api.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tax3api.c: In function ‘Tax3SynchronousQuery’:
tax3api.c:189:27: warning: variable ‘t3’ set but not used [-Wunused-but-set-variable]
  189 |   time_t          t1, t2, t3;
      |                           ^~
tax3api.c: In function ‘CheckSuggestedFixes’:
tax3api.c:1030:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1030 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘TryNewSuggestedFixes’:
tax3api.c:1142:20: warning: variable ‘tep’ set but not used [-Wunused-but-set-variable]
 1142 |   T3ErrorPtr       tep;
      |                    ^~~
tax3api.c: In function ‘RemoveSpeciesSpecific’:
tax3api.c:1398:13: warning: unused variable ‘cp’ [-Wunused-variable]
 1398 |     CharPtr cp;
      |             ^~
At top level:
tax3api.c:3399:13: warning: ‘AddBioSourcesToChecklist’ defined but not used [-Wunused-function]
 3399 | static void AddBioSourcesToChecklist (ValNodePtr biop_list, ValNodePtr check_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
tax3api.c:2699:16: warning: ‘MatchesGenBankSynonym’ defined but not used [-Wunused-function]
 2699 | static Boolean MatchesGenBankSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:2682:16: warning: ‘MatchesSynonym’ defined but not used [-Wunused-function]
 2682 | static Boolean MatchesSynonym (CharPtr txt, OrgRefPtr response_org)
      |                ^~~~~~~~~~~~~~
tax3api.c:2273:16: warning: ‘EndsWithSp’ defined but not used [-Wunused-function]
 2273 | static Boolean EndsWithSp (CharPtr str)
      |                ^~~~~~~~~~
tax3api.c:990:19: warning: ‘MakeTaxFixRequestList’ defined but not used [-Wunused-function]
  990 | static ValNodePtr MakeTaxFixRequestList (ValNodePtr biop_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~
tax3api.c:362:16: warning: ‘HasMisspellingFlag’ defined but not used [-Wunused-function]
  362 | static Boolean HasMisspellingFlag (T3DataPtr t)
      |                ^~~~~~~~~~~~~~~~~~
tax3api.c:298:13: warning: ‘SaveTaxon3Request’ defined but not used [-Wunused-function]
  298 | static void SaveTaxon3Request (Taxon3RequestPtr t3rp, CharPtr path)
      |             ^~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objegkludge.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objegkludge.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objentgene.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentgene.c: In function ‘EntrezgeneAsnRead’:
objentgene.c:103:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  103 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘EntrezgeneSetAsnRead’:
objentgene.c:412:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  412 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:409:12: warning: unused variable ‘av’ [-Wunused-variable]
  409 |    DataVal av;
      |            ^~
objentgene.c: In function ‘GeneTrackAsnRead’:
objentgene.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘GeneCommentaryAsnRead’:
objentgene.c:768:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  768 |    AsnReadFunc func;
      |                ^~~~
objentgene.c: In function ‘Method_methodFree’:
objentgene.c:1073:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1073 |    Pointer pnt;
      |            ^~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1104:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1104 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1103:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1103 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘Method_methodAsnRead’:
objentgene.c:1184:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1184 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘GeneSourceAsnRead’:
objentgene.c:1426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1426 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1425:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1425 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘XtraTermsAsnRead’:
objentgene.c:1641:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1641 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1640:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1640 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘OtherSourceAsnRead’:
objentgene.c:1812:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1812 |    AsnReadFunc func;
      |                ^~~~
objentgene.c:1811:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1811 |    Boolean isError = FALSE;
      |            ^~~~~~~
objentgene.c: In function ‘MapsAsnRead’:
objentgene.c:1236:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1236 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objentgene.c:1183:10: note: ‘choice’ was declared here
 1183 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmla2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla2.c: In function ‘Mla2RequestFree’:
objmla2.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsg2AsnRead’:
objmla2.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla2.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla2.c: In function ‘TitleMsgList2AsnRead’:
objmla2.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
objmla2.c: In function ‘Mla22RequestAsnRead’:
objmla2.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla2.c: In function ‘Mla2BackAsnRead’:
objmla2.c:904:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  904 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mla2api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mla2api.h:45,
                 from mla2api.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF qblastapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
qblastapi.c: In function ‘SecondQBlastCallback’:
qblastapi.c:262:15: warning: variable ‘waiting’ set but not used [-Wunused-but-set-variable]
  262 |   Boolean     waiting = FALSE;
      |               ^~~~~~~
qblastapi.c: In function ‘BLASTGetSeqAnnotByRIDEx’:
qblastapi.c:826:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  826 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘BLASTGetQueryBioseqByRIDEx’:
qblastapi.c:871:18: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  871 |     EIO_Status   status;
      |                  ^~~~~~
qblastapi.c: In function ‘QBlastCheckQueue’:
qblastapi.c:688:36: warning: ‘&FORMAT_OBJECT=Alignment&FOR...’ directive writing 43 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
  688 |       sprintf (str, "CMD=Get&RID=%s&FORMAT_OBJECT=Alignment&FORMAT_TYPE=ASN.1\n", curr->rid);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from qblastapi.c:123:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 56 and 119 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscnapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscnapi.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmim.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmim.c: In function ‘MimSetAsnRead’:
objmim.c:86:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   86 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimDateAsnRead’:
objmim.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objmim.c:247:12: warning: unused variable ‘isError’ [-Wunused-variable]
  247 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEntryAsnRead’:
objmim.c:448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimCitAsnRead’:
objmim.c:909:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  909 |    AsnReadFunc func;
      |                ^~~~
objmim.c:908:12: warning: unused variable ‘isError’ [-Wunused-variable]
  908 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimTextAsnRead’:
objmim.c:1096:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1096 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1095:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1095 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimEditItemAsnRead’:
objmim.c:1276:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1276 |    AsnReadFunc func;
      |                ^~~~
objmim.c:1275:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1275 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAllelicVariantAsnRead’:
objmim.c:1448:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1448 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimIndexTermAsnRead’:
objmim.c:1640:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1640 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimReferenceAsnRead’:
objmim.c:1819:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1819 |    AsnReadFunc func;
      |                ^~~~
objmim.c: In function ‘MimLinkAsnRead’:
objmim.c:2195:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2195 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2194:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2194 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimAuthorAsnRead’:
objmim.c:2369:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2369 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2368:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2368 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmim.c: In function ‘MimPageAsnRead’:
objmim.c:2535:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2535 |    AsnReadFunc func;
      |                ^~~~
objmim.c:2534:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2534 |    Boolean isError = FALSE;
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objvalid.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objvalid.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objvalid.c: In function ‘FieldRuleAsnRead’:
objvalid.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:87:12: warning: unused variable ‘isError’ [-Wunused-variable]
   87 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘FieldSetAsnRead’:
objvalid.c:259:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  259 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:256:12: warning: unused variable ‘av’ [-Wunused-variable]
  256 |    DataVal av;
      |            ^~
objvalid.c: In function ‘DependentFieldRuleAsnRead’:
objvalid.c:396:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  396 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:395:12: warning: unused variable ‘isError’ [-Wunused-variable]
  395 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘DependentFieldSetAsnRead’:
objvalid.c:582:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  582 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:579:12: warning: unused variable ‘av’ [-Wunused-variable]
  579 |    DataVal av;
      |            ^~
objvalid.c: In function ‘CommentRuleAsnRead’:
objvalid.c:721:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  721 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:720:12: warning: unused variable ‘isError’ [-Wunused-variable]
  720 |    Boolean isError = FALSE;
      |            ^~~~~~~
objvalid.c: In function ‘CommentSetAsnRead’:
objvalid.c:926:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  926 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:923:12: warning: unused variable ‘av’ [-Wunused-variable]
  923 |    DataVal av;
      |            ^~
objvalid.c: In function ‘PhraseListAsnRead’:
objvalid.c:1043:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1043 |    AsnReadFunc func;
      |                ^~~~
objvalid.c:1040:12: warning: unused variable ‘av’ [-Wunused-variable]
 1040 |    DataVal av;
      |            ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mimapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mimapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqport.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqport.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqport.c: In function ‘productLoc_to_locationLoc’:
seqport.c:4260:13: warning: variable ‘is_cdregion’ set but not used [-Wunused-but-set-variable]
 4260 |     Boolean is_cdregion = FALSE;
      |             ^~~~~~~~~~~
seqport.c: In function ‘NaLocFromNaInterval’:
seqport.c:4590:8: warning: variable ‘p_end_pos’ set but not used [-Wunused-but-set-variable]
 4590 |   Int4 p_end_pos;    /*the end of the product sequence in the current loc*/
      |        ^~~~~~~~~
seqport.c: In function ‘dnaLoc_to_aaLoc’:
seqport.c:4706:18: warning: variable ‘cds_right’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |                  ^~~~~~~~~
seqport.c:4706:8: warning: variable ‘cds_left’ set but not used [-Wunused-but-set-variable]
 4706 |   Int4 cds_left, cds_right;
      |        ^~~~~~~~
seqport.c: In function ‘DeltaRevComp’:
seqport.c:5388:21: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5388 |   DeltaSeqPtr  dsp, dspnext;
      |                     ^~~~~~~
seqport.c: In function ‘SeqSearchEnterNucWord’:
seqport.c:6943:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 6943 |   Int2     next, patLen, state;
      |                  ^~~~~~
seqport.c: In function ‘ProtSearchEnterProtWord’:
seqport.c:7817:18: warning: variable ‘patLen’ set but not used [-Wunused-but-set-variable]
 7817 |   Int2     next, patLen, state;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqport.c:62:
seqport.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sequtil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from sequtil.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequtil.c: In function ‘GetPointsForLeftAndRightOffsets’:
sequtil.c:7994:11: warning: variable ‘first_strand’ set but not used [-Wunused-but-set-variable]
 7994 |     Uint1 first_strand, last_strand;
      |           ^~~~~~~~~~~~
sequtil.c: In function ‘SeqPointWriteEx’:
sequtil.c:8532:15: warning: variable ‘fuzzlen’ set but not used [-Wunused-but-set-variable]
 8532 |     Int4      fuzzlen, id_len;
      |               ^~~~~~~
sequtil.c: In function ‘TaxNameFromCommon’:
sequtil.c:8687:42: warning: missing braces around initializer [-Wmissing-braces]
 8687 |     static Nlm_TaxCommon taxcommon[40] = {
      |                                          ^
 8688 |     "Chinese hamsters", "Cricetulus sp."
      |     {
 8689 |     ,"Syrian golden hamsters", "Mesocricetus auratus"
      |     }{
 8690 |     ,"Syrian hamsters", "Mesocricetus sp."
      |     }{
 8691 |     ,"barley", "Hordeum sp."
      |     }{
 8692 |     ,"carrots", "Daucus sp."
      |     }{
 8693 |     ,"cats", "Felis sp."
      |     }{
 8694 |     ,"cattles", "Bos sp."
      |     }{
 8695 |     ,"chickens", "Gallus sp."
      |     }{
 8696 |     ,"chimpanzees", "Pan sp."
      |     }{
 8697 |     ,"chimpanzes", "Pan sp."
      |     }{
 8698 |     ,"corn", "Zea sp."
      |     }{
 8699 |     ,"cucumber", "Cucumis sativus"
      |     }{
 8700 |     ,"dogs", "Canis sp."
      |     }{
 8701 |     ,"goats", "Capra sp."
      |     }{
 8702 |     ,"gorillas", "Gorilla sp."
      |     }{
 8703 |     ,"guinea pigs", "Cavia sp."
      |     }{
 8704 |     ,"hamsters", "Cricetidae gen. sp."
      |     }{
 8705 |     ,"horses", "Equus sp."
      |     }{
 8706 |     ,"humans", "Homo sapiens"
      |     }{
 8707 |     ,"maize", "Zea sp."
      |     }{
 8708 |     ,"mice", "Mus sp."
      |     }{
 8709 |     ,"mouse", "Mus sp."
      |     }{
 8710 |     ,"peas", "Pisum sp."
      |     }{
 8711 |     ,"potatoes", "Solanum sp."
      |     }{
 8712 |     ,"potato", "Solanum sp."
      |     }{
 8713 |     ,"quails", "Phasianidae gen. sp."
      |     }{
 8714 |     ,"rabbits", "Oryctolagus sp."
      |     }{
 8715 |     ,"rats", "Rattus sp."
      |     }{
 8716 |     ,"rices", "Oryza sp."
      |     }{
 8717 |     ,"sheeps", "Ovis sp."
      |     }{
 8718 |     ,"sorghums", "Sorghum sp."
      |     }{
 8719 |     ,"soybeans", "Glycine sp."
      |     }{
 8720 |     ,"spinach", "Spinacia sp."
      |     }{
 8721 |     ,"swine", "Sus sp."
      |     }{
 8722 |     ,"tobacco", "Nicotiania sp."
      |     }{
 8723 |     ,"tomatoes", "Lycopersicon sp."
      |     }{
 8724 |     ,"tomato", "Lycopersicon sp."
      |     }{
 8725 |     ,"turkeys", "Meleagris sp."
      |     }{
 8726 |     ,"wheat", "Triticum sp."
      |     }{
 8727 |     ,"zebrafish", "Brachydanio sp."
      |     }{
 8728 | };
      | }
sequtil.c: In function ‘GetBestScoreAndEvalueFromScorePtr’:
sequtil.c:9510:48: warning: variable ‘sum_set’ set but not used [-Wunused-but-set-variable]
 9510 |     Boolean score_set=FALSE, evalue_set=FALSE, sum_set=FALSE, bit_set=FALSE;
      |                                                ^~~~~~~
sequtil.c: In function ‘SeqIdFromAccessionEx’:
sequtil.c:10110:38: warning: variable ‘sip2’ set but not used [-Wunused-but-set-variable]
10110 |                             SeqIdPtr sip2;
      |                                      ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objprt.h:67,
                 from ../include/prtutil.h:69,
                 from prtutil.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtutil.c: In function ‘StdFormatPrint’:
prtutil.c:1422:10: warning: unused variable ‘ptr’ [-Wunused-variable]
 1422 |  CharPtr ptr = NULL;
      |          ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simple.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from simple.c:68:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from simple.c:69:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofasta.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tofasta.c: In function ‘DoSpecialDefline’:
tofasta.c:1461:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1461 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
tofasta.c: In function ‘FastaIdEx’:
tofasta.c:3100:15: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
 3100 |     SeqIdPtr  sip;
      |               ^~~
tofasta.c: In function ‘CreateDefLineExEx’:
tofasta.c:4991:13: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4991 |             if (vnp != NULL)
      |             ^~
tofasta.c:4993:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4993 |               if (title != NULL) {
      |               ^~
tofasta.c: In function ‘x_SetSuffix’:
tofasta.c:8313:24: warning: variable ‘buf2’ set but not used [-Wunused-but-set-variable]
 8313 |   Char     buf1 [512], buf2 [256];
      |                        ^~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2838:9: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 2838 |         fgets(buffer+1, BuffSize, fd);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:2863:13: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 2863 |             fgets(buffer+i+1, FTSE_BUFF_CHUNK, fd);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
tofasta.c:8058:17: warning: ‘x_StringInList’ defined but not used [-Wunused-function]
 8058 |  static Boolean x_StringInList (
      |                 ^~~~~~~~~~~~~~
tofasta.c:3661:19: warning: ‘GatherGenesForCDS’ defined but not used [-Wunused-function]
 3661 | static ValNodePtr GatherGenesForCDS(SeqLocPtr slp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3627:19: warning: ‘GatherSeqFeatProt’ defined but not used [-Wunused-function]
 3627 | static SeqFeatPtr GatherSeqFeatProt(BioseqPtr bsp)
      |                   ^~~~~~~~~~~~~~~~~
tofasta.c:3541:19: warning: ‘GetCDSProtUnindexed’ defined but not used [-Wunused-function]
 3541 | static SeqFeatPtr GetCDSProtUnindexed (
      |                   ^~~~~~~~~~~~~~~~~~~
tofasta.c:3378:19: warning: ‘IndexedGatherDescrOnBioseq’ defined but not used [-Wunused-function]
 3378 | static ValNodePtr IndexedGatherDescrOnBioseq (ItemInfoPtr iip, BioseqPtr bsp, Uint1 choice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~
tofasta.c:3283:16: warning: ‘get_descr’ defined but not used [-Wunused-function]
 3283 | static Boolean get_descr (GatherContextPtr gcp)
      |                ^~~~~~~~~
tofasta.c:3254:16: warning: ‘get_descr_on_top’ defined but not used [-Wunused-function]
 3254 | static Boolean get_descr_on_top (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~
tofasta.c: In function ‘FastaReadSequenceInternalEx’:
tofasta.c:2713:27: warning: ‘mask_to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2713 |             mask_sint->to = mask_to;
      |             ~~~~~~~~~~~~~~^~~~~~~~~
tofasta.c: In function ‘FastaToSeqEntryInternalExEx’:
tofasta.c:2866:29: warning: ‘firstchar’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2866 |             for(i =0; (ch = *firstchar) != NULLB; firstchar++, i++) {
      |                             ^~~~~~~~~~
tofasta.c: In function ‘BioseqFastaStreamInternal’:
tofasta.c:1351:49: warning: ‘%s’ directive writing up to 40 bytes into a region of size between 32 and 42 [-Wformat-overflow=]
 1351 |         sprintf (spn, "oData.push({gi:%ld,acc:\"%s\"})", (long) sf.gi, acc);
      |                                                 ^~                     ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from tofasta.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 26 and 76 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tofile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tofile.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tomedlin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from tomedlin.c:153:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valid.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from valid.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valid.c: In function ‘GetUserFieldValueString’:
valid.c:2212:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 2212 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
valid.c: In function ‘ValidateSeqIdCase’:
valid.c:3574:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 3574 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateGenProdSet’:
valid.c:6046:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 6046 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘CountAdjacentProc’:
valid.c:6730:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
 6730 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘CheckBioseqEndsForNAndGap’:
valid.c:7040:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7040 |       if (str [0] == 'n' || str [0] == 'N' && begin_n != NULL) {
      |                                            ^
valid.c:7061:56: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 7061 |       if (str [len - 1] == 'n' || str [len - 1] == 'N' && end_n != NULL) {
      |                                                        ^
valid.c: In function ‘ValidateBioseqInst’:
valid.c:7341:19: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 7341 |   Uint1           tech;
      |                   ^~~~
valid.c:7278:19: warning: variable ‘prot’ set but not used [-Wunused-but-set-variable]
 7278 |   SeqFeatPtr      prot;
      |                   ^~~~
valid.c: In function ‘FixOrgModVoucher’:
valid.c:13882:22: warning: unused variable ‘allowed_type’ [-Wunused-variable]
13882 |   Uint1    type = 0, allowed_type = 0;
      |                      ^~~~~~~~~~~~
valid.c: In function ‘ValidateBioSource’:
valid.c:15514:19: warning: variable ‘isMicrosporidia’ set but not used [-Wunused-but-set-variable]
15514 |   Boolean         isMicrosporidia = FALSE;
      |                   ^~~~~~~~~~~~~~~
valid.c:15512:19: warning: variable ‘isEukaryote’ set but not used [-Wunused-but-set-variable]
15512 |   Boolean         isEukaryote = FALSE;
      |                   ^~~~~~~~~~~
valid.c:15503:19: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
15503 |   Int4            id;
      |                   ^~
valid.c: In function ‘ValidateDblink’:
valid.c:16786:21: warning: variable ‘gcp’ set but not used [-Wunused-but-set-variable]
16786 |   GatherContextPtr  gcp;
      |                     ^~~
valid.c: In function ‘ValidateSeqDescrCommon’:
valid.c:16883:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
16883 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘GetFeatsInGaps’:
valid.c:18858:21: warning: variable ‘realBases’ set but not used [-Wunused-but-set-variable]
18858 |   Int4              realBases;
      |                     ^~~~~~~~~
valid.c:18857:21: warning: variable ‘plusses’ set but not used [-Wunused-but-set-variable]
18857 |   Int4              plusses;
      |                     ^~~~~~~
valid.c:18854:21: warning: variable ‘Ns’ set but not used [-Wunused-but-set-variable]
18854 |   Int4              Ns;
      |                     ^~
valid.c:18851:21: warning: variable ‘dashes’ set but not used [-Wunused-but-set-variable]
18851 |   Int4              dashes;
      |                     ^~~~~~
valid.c: In function ‘ValidateBioseqContextIndexed’:
valid.c:20267:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
20267 |   if (bvsp->is_mrna || cdscount == 1 && genecount < 2) {
      |                        ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
valid.c:19476:65: warning: variable ‘cdsmgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                                                 ^~~~~~~~
valid.c:19476:33: warning: variable ‘cdspgene’ set but not used [-Wunused-but-set-variable]
19476 |   SeqFeatPtr         utr5pgene, cdspgene, utr3pgene, utr5mgene, cdsmgene, utr3mgene;
      |                                 ^~~~~~~~
valid.c:19475:51: warning: variable ‘utr5minus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                                   ^~~~~~~~~
valid.c:19475:41: warning: variable ‘utr3plus’ set but not used [-Wunused-but-set-variable]
19475 |   SeqFeatPtr         utr5plus, cdsplus, utr3plus, utr5minus, cdsminus, utr3minus;
      |                                         ^~~~~~~~
valid.c:19442:41: warning: variable ‘utr3gene’ set but not used [-Wunused-but-set-variable]
19442 |   SeqFeatPtr         cdsgene, utr5gene, utr3gene;
      |                                         ^~~~~~~~
valid.c: In function ‘ReportBadWGSGap’:
valid.c:21153:18: warning: unused variable ‘is_wgs’ [-Wunused-variable]
21153 |     Boolean      is_wgs = FALSE;
      |                  ^~~~~~
valid.c: In function ‘ValidateBarcodeIndexNumber’:
valid.c:21432:21: warning: variable ‘bin_len’ set but not used [-Wunused-but-set-variable]
21432 |   Int4              bin_len;
      |                     ^~~~~~~
valid.c: In function ‘ValidateRptUnit’:
valid.c:23411:32: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
23411 |   Boolean            badchars, found, just_nuc_letters, multi_rpt_unit, in_range;
      |                                ^~~~~
valid.c: In function ‘CheckForCommonCDSProduct’:
valid.c:25628:19: warning: variable ‘is_nw’ set but not used [-Wunused-but-set-variable]
25628 |   Boolean         is_nw = FALSE;
      |                   ^~~~~
valid.c:25625:19: warning: variable ‘is_nc’ set but not used [-Wunused-but-set-variable]
25625 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c: In function ‘CheckForIllegalDbxref’:
valid.c:26017:16: warning: variable ‘id’ set but not used [-Wunused-but-set-variable]
26017 |   Int4         id;
      |                ^~
valid.c: In function ‘ValidateAnticodon’:
valid.c:26781:53: warning: variable ‘circular’ set but not used [-Wunused-but-set-variable]
26781 |                   ordered = TRUE, adjacent = FALSE, circular = FALSE, exception = FALSE;
      |                                                     ^~~~~~~~
valid.c:26780:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
26780 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c: In function ‘IsGeneXrefRedundant’:
valid.c:28000:17: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28000 |   Int2          count;
      |                 ^~~~~
valid.c: In function ‘ValidateSeqFeat’:
valid.c:28328:19: warning: unused variable ‘is_nc’ [-Wunused-variable]
28328 |   Boolean         is_nc = FALSE;
      |                   ^~~~~
valid.c:28308:19: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
28308 |   Int2            count;
      |                   ^~~~~
valid.c:28286:19: warning: variable ‘pdp’ set but not used [-Wunused-but-set-variable]
28286 |   PubdescPtr      pdp;
      |                   ^~~
valid.c: In function ‘CdTransCheck’:
valid.c:30490:19: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
30490 |   GeneRefPtr      grp;
      |                   ^~~
valid.c: In function ‘SpliceCheckEx’:
valid.c:31313:19: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
31313 |   SeqEntryPtr     sep;
      |                   ^~~
valid.c: In function ‘CdsProductIdCheck’:
valid.c:31689:15: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
31689 |   GeneRefPtr  grp;
      |               ^~~
valid.c: In function ‘ValidateSeqLoc’:
valid.c:31754:19: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
31754 |   Boolean         retval = TRUE, tmpval, mixed_strand = FALSE, unmarked_strand = FALSE,
      |                   ^~~~~~
valid.c:31753:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
31753 |   SeqLocPtr       tmp, prev;
      |                        ^~~~
valid.c: In function ‘SortSeqGraphProc’:
valid.c:32156:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
32156 |   } else if (gip2->right < gip2->right) {
      |                          ^
At top level:
valid.c:30138:13: warning: ‘ValidateTranslExcept’ defined but not used [-Wunused-function]
30138 | static void ValidateTranslExcept (
      |             ^~~~~~~~~~~~~~~~~~~~
valid.c:27650:16: warning: ‘CouldExtendPartial’ defined but not used [-Wunused-function]
27650 | static Boolean CouldExtendPartial (SeqLocPtr slp, Boolean partial5)
      |                ^~~~~~~~~~~~~~~~~~
valid.c:20878:28: warning: ‘MultiGeneOverlapFree’ defined but not used [-Wunused-function]
20878 | static MultiGeneOverlapPtr MultiGeneOverlapFree (MultiGeneOverlapPtr m)
      |                            ^~~~~~~~~~~~~~~~~~~~
valid.c:20828:19: warning: ‘ListFeaturesContainedInLocation’ defined but not used [-Wunused-function]
20828 | static ValNodePtr ListFeaturesContainedInLocation (BioseqPtr bsp, SeqLocPtr slp, Uint1 seqfeatChoice, Uint1 featdefChoice)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:17541:16: warning: ‘IsEMBLAccn’ defined but not used [-Wunused-function]
17541 | static Boolean IsEMBLAccn (SeqEntryPtr sep, SeqLocPtr location)
      |                ^~~~~~~~~~
valid.c:14642:16: warning: ‘CountryIsClosestToLatLon’ defined but not used [-Wunused-function]
14642 | static Boolean CountryIsClosestToLatLon (
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
valid.c:14545:16: warning: ‘LatLonInRange’ defined but not used [-Wunused-function]
14545 | static Boolean LatLonInRange (
      |                ^~~~~~~~~~~~~
valid.c:13478:16: warning: ‘LatLonIsValid’ defined but not used [-Wunused-function]
13478 | static Boolean LatLonIsValid (CharPtr name)
      |                ^~~~~~~~~~~~~
valid.c:10462:16: warning: ‘ConsistentWithC’ defined but not used [-Wunused-function]
10462 | static Boolean ConsistentWithC (Char ch)
      |                ^~~~~~~~~~~~~~~
valid.c:6952:13: warning: ‘ReportLongSeqId’ defined but not used [-Wunused-function]
 6952 | static void ReportLongSeqId (SeqIdPtr sip, ValidStructPtr vsp, Int4 max_len)
      |             ^~~~~~~~~~~~~~~
valid.c:5932:13: warning: ‘CheckMutSetSources’ defined but not used [-Wunused-function]
 5932 | static void CheckMutSetSources (BioSourcePtr biop, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~
valid.c:4360:13: warning: ‘FindLongIdsThatCollideWhenTruncated’ defined but not used [-Wunused-function]
 4360 | static void FindLongIdsThatCollideWhenTruncated (SeqEntryPtr sep, ValidStructPtr vsp, Int4 trunc_len)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
valid.c:1511:16: warning: ‘IsNotUnclassifiedExcept’ defined but not used [-Wunused-function]
 1511 | static Boolean IsNotUnclassifiedExcept (ValidStructPtr vsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from valapi.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valapi.c: In function ‘DoesStringMatchExpression’:
valapi.c:263:15: warning: variable ‘errstr’ set but not used [-Wunused-but-set-variable]
  263 |   const char *errstr;
      |               ^~~~~~
valapi.c: In function ‘DoesFieldValueMatchExpression’:
valapi.c:292:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
  292 |     sprintf (buf, "%d", ufp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr.h:261,
                 from alignmgr.c:584:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr.c: In function ‘AlnMgrIndexParentSA’:
alignmgr.c:1607:19: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1607 |       sap->saip = (Pointer)AMAlignIndexFree(amaip);
      |                   ^
alignmgr.c: In function ‘AlnMgrGetNthBlockRange’:
alignmgr.c:4182:21: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
 4182 |    AMAlignIndexPtr  amaip;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMakeFakeMultipleEx’:
alignmgr.c:5157:21: warning: variable ‘nogap’ set but not used [-Wunused-but-set-variable]
 5157 |    Boolean          nogap;
      |                     ^~~~~
alignmgr.c: In function ‘AlnMgrMapBioseqToBioseq’:
alignmgr.c:10840:19: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
10840 |             Uint1 gap;
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from alignmgr.c:584:
alignmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr.c:10572:16: warning: ‘am_merge_after_edit’ defined but not used [-Wunused-function]
10572 | static Boolean am_merge_after_edit (SeqAlignPtr sap)
      |                ^~~~~~~~~~~~~~~~~~~
alignmgr.c:6650:16: warning: ‘AlnMgrJaggedIndex’ defined but not used [-Wunused-function]
 6650 | static Boolean AlnMgrJaggedIndex(SeqAlignPtr sap, AMmsmsPtr ams_head, AMmsmsPtr *ams_mhead, Int4 numrows)
      |                ^~~~~~~~~~~~~~~~~
alignmgr.c:6123:18: warning: ‘AlnMgrConstructOverlaps’ defined but not used [-Wunused-function]
 6123 | static AMmsmsPtr AlnMgrConstructOverlaps(AMmsmsPtr ams_head)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c:5405:13: warning: ‘AlnMgrMergeNeighbors’ defined but not used [-Wunused-function]
 5405 | static void AlnMgrMergeNeighbors(SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrUnpackSeqAlign’:
alignmgr.c:1149:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1149 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrGetNthSeqRangeInSA’:
alignmgr.c:4115:19: warning: ‘tmp_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4115 |             *stop = tmp_end;
      |             ~~~~~~^~~~~~~~~
alignmgr.c:4113:20: warning: ‘tmp_beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4113 |             *start = tmp_beg;
      |             ~~~~~~~^~~~~~~~~
alignmgr.c: In function ‘am_is_consistent’:
alignmgr.c:10114:13: warning: ‘n’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10114 |             AlnMgrGetNthUnalignedForNthRow(sap, n, i, &u_start, &u_stop);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘am_print_seqalign_indexes’:
alignmgr.c:2416:30: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2416 |             for (j=0; j<(saip->ssdp[i]->numsect); j++)
      |                          ~~~~^~~~~~
alignmgr.c:2478:30: warning: ‘amaip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2478 |             for (i=0; i<amaip->numbsqs; i++)
      |                         ~~~~~^~~~~~~~~
alignmgr.c: In function ‘AlnMgrGetSubAlign’:
alignmgr.c:9097:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9097 |          salp = am_cleanupsalp(salp);
      |                 ^~~~~~~~~~~~~~~~~~~~
alignmgr.c: In function ‘AlnMgrMakeMultByIntersectOnMaster’:
alignmgr.c:5865:10: warning: ‘sip_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5865 |    while (sip && !done)
      |          ^
alignmgr.c:5845:18: note: ‘sip_head’ was declared here
 5845 |    SeqIdPtr      sip_head;
      |                  ^~~~~~~~
alignmgr.c:5592:4: warning: ‘sip_tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5592 |    SeqIdFree(sip_tmp);
      |    ^~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliparse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aliparse.c: In function ‘s_IsInterleaved’:
aliparse.c:929:37: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  929 |   (s_configInfo.useMaybes == FALSE) &&
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
  930 |   (seqLinePtr->maybe == FALSE))
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~       
aliparse.c:823:20: warning: variable ‘isMaybe’ set but not used [-Wunused-but-set-variable]
  823 |   Boolean          isMaybe;
      |                    ^~~~~~~
aliparse.c: In function ‘s_ProcessInterId’:
aliparse.c:1000:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1000 |   ErrInfoPtr  errPtr;
      |               ^~~~~~
aliparse.c: In function ‘s_ProcessInterSeq’:
aliparse.c:1090:15: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1090 |   ErrInfoPtr  errPtr = NULL;
      |               ^~~~~~
aliparse.c: In function ‘s_AnalyzeInterleaved’:
aliparse.c:1193:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1193 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_ProcessContigId’:
aliparse.c:1385:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1385 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_ProcessContigSeq’:
aliparse.c:1476:18: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 1476 |   ErrInfoPtr     errPtr;
      |                  ^~~~~~
aliparse.c: In function ‘s_AnalyzeContiguous’:
aliparse.c:1603:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1603 |        (seqLinePtr->maybe == TRUE) && (s_configInfo.useMaybes == TRUE))
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c: In function ‘s_CheckContext’:
aliparse.c:2150:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2150 |     (seqLinePtr->maybe == TRUE) &&
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~
 2151 |     (s_configInfo.useMaybes == TRUE))
      |     ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:2131:20: warning: variable ‘errPtr’ set but not used [-Wunused-but-set-variable]
 2131 |   ErrInfoPtr       errPtr;
      |                    ^~~~~~
aliparse.c: In function ‘PrintOutMultAlign’:
aliparse.c:3161:10: warning: statement with no effect [-Wunused-value]
 3161 |          for (d; d<spacer; d++)
      |          ^~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3227:17: warning: variable ‘sdp’ set but not used [-Wunused-but-set-variable]
 3227 |    SeqDescrPtr  sdp;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliparse.c:9:
aliparse.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
aliparse.c:57:18: warning: ‘s_SegCompare’ declared ‘static’ but never defined [-Wunused-function]
   57 | static int       s_SegCompare(const void *i,
      |                  ^~~~~~~~~~~~
aliparse.c:3186:13: warning: ‘PrintOutSegs’ defined but not used [-Wunused-function]
 3186 | static void PrintOutSegs(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~
aliparse.c:3130:13: warning: ‘PrintOutMultAlign’ defined but not used [-Wunused-function]
 3130 | static void PrintOutMultAlign(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
aliparse.c:449:13: warning: ‘s_FreeRowList’ defined but not used [-Wunused-function]
  449 | static void s_FreeRowList (ValNodePtr rowList)
      |             ^~~~~~~~~~~~~
aliparse.c: In function ‘s_GetRowIdString’:
aliparse.c:543:20: warning: ‘newIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  543 |   CharPtr          newIdStr;
      |                    ^~~~~~~~
aliparse.c: In function ‘s_ProcessMaybes’:
aliparse.c:696:21: warning: ‘lastSeqPart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  696 |   lastSeqPart->next = newSeqPart;
      |   ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/aliparse.h:12,
                 from aliparse.c:9:
../include/ncbistr.h:337:19: warning: ‘currentIdStr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  337 | #define StringCmp Nlm_StringCmp
      |                   ^~~~~~~~~~~~~
aliparse.c:631:18: note: ‘currentIdStr’ was declared here
  631 |   CharPtr        currentIdStr;
      |                  ^~~~~~~~~~~~
aliparse.c: In function ‘Ali_Read’:
aliparse.c:1355:16: warning: ‘previousLength’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1355 |       errPtr = Ali_AddError (&(fileInfoPtr->errors),ERR_SEQ_LENGTH_MISMATCH,
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1356 |         previousLength,
      |         ~~~~~~~~~~~~~~~
 1357 |         s_configInfo.declaredInfo.seqLength);
      |         ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
aliparse.c:1154:20: note: ‘previousLength’ was declared here
 1154 |   Int4             previousLength;
      |                    ^~~~~~~~~~~~~~
aliparse.c:927:18: warning: ‘seqLinePtr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  927 |    if (seqLinePtr->sequence != NULL)
      |        ~~~~~~~~~~^~~~~~~~~~
aliparse.c:820:20: note: ‘seqLinePtr’ was declared here
  820 |   SeqLineInfoPtr   seqLinePtr;
      |                    ^~~~~~~~~~
aliparse.c:748:3: warning: ‘cLineType’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  748 |   fprintf(stderr,"%04d: SEQUENCE[%c] : %s\n",
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  749 |    seqLinePtr->rowNum,
      |    ~~~~~~~~~~~~~~~~~~~
  750 |    cLineType,
      |    ~~~~~~~~~~
  751 |    seqLinePtr->sequence);
      |    ~~~~~~~~~~~~~~~~~~~~~
aliparse.c:723:20: note: ‘cLineType’ was declared here
  723 |   Char             cLineType;
      |                    ^~~~~~~~~
aliparse.c: In function ‘ALI_ConvertToNCBIData’:
aliparse.c:3276:4: warning: ‘sep_new’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3276 |    SeqAlignAddInSeqEntry (sep_head, sanp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aliread.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from aliread.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from aliread.c:6:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignval.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignval.c: In function ‘ValidateSeqlengthInDenseSeg’:
alignval.c:1267:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1267 |               if(stptrtemp[j+i*aligndim]+lenptrtemp[i]>bslen)
      |                 ^
alignval.c: In function ‘PercentStringMatch’:
alignval.c:1579:32: warning: variable ‘max_len’ set but not used [-Wunused-but-set-variable]
 1579 |   Int4 len1, len2, min_len, k, max_len;
      |                                ^~~~~~~
alignval.c: In function ‘CheckAlnSeqLens’:
alignval.c:2004:12: warning: variable ‘aln_len’ set but not used [-Wunused-but-set-variable]
 2004 |   Int4     aln_len, start, stop;
      |            ^~~~~~~
alignval.c: In function ‘ValidateSeqAlign’:
alignval.c:2125:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 2125 |   MsgAnswer    ans;
      |                ^~~
alignval.c: In function ‘GetAlignmentColumnPercentIdentities’:
alignval.c:2511:14: warning: variable ‘num_match’ set but not used [-Wunused-but-set-variable]
 2511 |   Int4       num_match;
      |              ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignval.c:57:
alignval.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignval.c:2002:13: warning: ‘CheckAlnSeqLens’ defined but not used [-Wunused-function]
 2002 | static void CheckAlnSeqLens (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~
alignval.c:1560:16: warning: ‘IsSipContainedInStdseg’ defined but not used [-Wunused-function]
 1560 | static Boolean IsSipContainedInStdseg(SeqIdPtr sip, StdSegPtr ssp)
      |                ^~~~~~~~~~~~~~~~~~~~~~
alignval.c:602:13: warning: ‘delete_bioseqs’ defined but not used [-Wunused-function]
  602 | static void delete_bioseqs (ValNodePtr ids, Uint2 entityID)
      |             ^~~~~~~~~~~~~~
alignval.c: In function ‘ValMessage’:
alignval.c:465:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  465 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignval.c:448:92: warning: ‘, the alignment claims to co...’ directive writing 195 bytes into a region of size between 155 and 493 [-Wformat-overflow=]
  448 |       sprintf(string2, "In sequence %s, segment %ld (near sequence position %ld) context %s, the alignment claims to contain residue coordinates that are past the end of the sequence.  Either the sequence is too short, or there are extra characters or formatting errors in the alignment", buf, (long) Intvalue, (long) pos, buf3);
      |                                                                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from alignval.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 255 and 593 bytes into a destination of size 552
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil1.c: In function ‘GeneExtendFunc’:
sqnutil1.c:2012:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 2012 |   GeneRefPtr     grp;
      |                  ^~~
sqnutil1.c: In function ‘ParseAnticodon’:
sqnutil1.c:3494:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3494 |   Uint1      strand;
      |              ^~~~~~
sqnutil1.c: In function ‘ParseCodeBreak’:
sqnutil1.c:3617:17: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 3617 |   Uint1         strand;
      |                 ^~~~~~
sqnutil1.c: In function ‘CleanUpPubdescAuthors’:
sqnutil1.c:9093:20: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 9093 |   ValNodePtr PNTR  prev;
      |                    ^~~~
sqnutil1.c: In function ‘FixWrongFuzzOnPlusStrand’:
sqnutil1.c:11948:15: warning: unused variable ‘spp’ [-Wunused-variable]
11948 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘FixWrongFuzzOnMinusStrand’:
sqnutil1.c:12007:15: warning: unused variable ‘spp’ [-Wunused-variable]
12007 |   SeqPntPtr   spp;
      |               ^~~
sqnutil1.c: In function ‘ConsolidateBioSourceNotes’:
sqnutil1.c:13250:21: warning: variable ‘note_mod’ set but not used [-Wunused-but-set-variable]
13250 |   OrgModPtr    mod, note_mod;
      |                     ^~~~~~~~
sqnutil1.c:13249:21: warning: variable ‘note_ssp’ set but not used [-Wunused-but-set-variable]
13249 |   SubSourcePtr ssp, note_ssp;
      |                     ^~~~~~~~
sqnutil1.c: In function ‘RemoveUnnecessaryGeneXrefs’:
sqnutil1.c:15059:24: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
15059 |   Int2                 count;
      |                        ^~~~~
sqnutil1.c: In function ‘LinkTwoFeatures’:
sqnutil1.c:17930:25: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
17930 |   SeqFeatXrefPtr  xref, prev_xref, next_xref;
      |                         ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil1.c:63:
sqnutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil1.c:10386:16: warning: ‘CleanUpSgml’ defined but not used [-Wunused-function]
10386 | static CharPtr CleanUpSgml (
      |                ^~~~~~~~~~~
sqnutil1.c:10272:13: warning: ‘SortGoTermsSfp’ defined but not used [-Wunused-function]
10272 | static void SortGoTermsSfp (
      |             ^~~~~~~~~~~~~~
sqnutil1.c:7405:16: warning: ‘IsStringSingleToken’ defined but not used [-Wunused-function]
 7405 | static Boolean IsStringSingleToken (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~
sqnutil1.c:4942:13: warning: ‘CleanupConsSplice’ defined but not used [-Wunused-function]
 4942 | static void CleanupConsSplice (GBQualPtr gbq)
      |             ^~~~~~~~~~~~~~~~~
sqnutil1.c:2007:16: warning: ‘GeneExtendFunc’ defined but not used [-Wunused-function]
 2007 | static Boolean GeneExtendFunc (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~
sqnutil1.c: In function ‘PromoteXrefsExEx’:
sqnutil1.c:2336:34: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2336 |               sprintf (lcl, "lcl|%s", id);
      |                                  ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2321:32: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2321 |             sprintf (lcl, "lcl|%s", id);
      |                                ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2561:44: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2561 |                         sprintf (lcl, "lcl|%s", id);
      |                                            ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2546:42: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2546 |                       sprintf (lcl, "lcl|%s", id);
      |                                          ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2623:44: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2623 |                         sprintf (lcl, "lcl|%s", id);
      |                                            ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2608:42: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2608 |                       sprintf (lcl, "lcl|%s", id);
      |                                          ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2755:32: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2755 |             sprintf (lcl, "lcl|%s", id);
      |                                ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil1.c:2740:30: warning: ‘%s’ directive writing up to 127 bytes into a region of size 124 [-Wformat-overflow=]
 2740 |           sprintf (lcl, "lcl|%s", id);
      |                              ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil1.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil2.c: In function ‘FindResidueByName’:
sqnutil2.c:5223:11: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5223 |   Uint1   last;
      |           ^~~~
sqnutil2.c: In function ‘ReadFeatureTableEx’:
sqnutil2.c:7254:18: warning: variable ‘isnote’ set but not used [-Wunused-but-set-variable]
 7254 |   Boolean        isnote;
      |                  ^~~~~~
sqnutil2.c:7246:18: warning: variable ‘endsinspace’ set but not used [-Wunused-but-set-variable]
 7246 |   Boolean        endsinspace;
      |                  ^~~~~~~~~~~
sqnutil2.c: In function ‘SeqEntryCopyReplace’:
sqnutil2.c:9270:8: warning: variable ‘type’ set but not used [-Wunused-but-set-variable]
 9270 |  Uint1 type = 0;
      |        ^~~~
sqnutil2.c: In function ‘StreamingReadBioseq’:
sqnutil2.c:10095:10: warning: variable ‘level’ set but not used [-Wunused-but-set-variable]
10095 |     Int2 level;
      |          ^~~~~
sqnutil2.c: In function ‘StreamAsnForDescriptors’:
sqnutil2.c:10328:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10328 |     while (rval = StreamingReadSeqEntry (aip, sp, &sr)) {
      |            ^~~~
sqnutil2.c: In function ‘WriteAsnWithReplacedDescriptors’:
sqnutil2.c:10749:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
10749 |     while (rval = StreamingReadWriteSeqEntry(desc_stream_list, aip_in, aip_out, sp)) {
      |            ^~~~
sqnutil2.c: In function ‘ReadFeatureTableFile’:
sqnutil2.c:11700:18: warning: variable ‘begin’ set but not used [-Wunused-but-set-variable]
11700 |   Int4           begin;
      |                  ^~~~~
sqnutil2.c: In function ‘ReadFastaOnly’:
sqnutil2.c:11894:18: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
11894 |   Char           seqid [2048];
      |                  ^~~~~
sqnutil2.c: In function ‘ReadDeltaFastaWithEmptyDefline’:
sqnutil2.c:12446:29: warning: variable ‘seqid’ set but not used [-Wunused-but-set-variable]
12446 |   Char         line [4096], seqid [2048];
      |                             ^~~~~
sqnutil2.c: In function ‘SortSeqGraphProc’:
sqnutil2.c:13002:26: warning: self-comparison always evaluates to false [-Wtautological-compare]
13002 |   } else if (gip2->right < gip2->right) {
      |                          ^
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13052:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13052 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘GetScoresbySeqId’:
sqnutil2.c:13461:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
13461 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil2.c: In function ‘RemoveGapsFromDeltaLocation’:
sqnutil2.c:15480:15: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
15480 |   Uint1       strand;
      |               ^~~~~~
sqnutil2.c: In function ‘IsStringInSpanInList’:
sqnutil2.c:16693:11: warning: variable ‘str_val’ set but not used [-Wunused-but-set-variable]
16693 |   Int4    str_val;
      |           ^~~~~~~
sqnutil2.c:16691:27: warning: variable ‘suffix_len’ set but not used [-Wunused-but-set-variable]
16691 |   Int4    prefix_len = 0, suffix_len;
      |                           ^~~~~~~~~~
sqnutil2.c: In function ‘CreateStructuredCommentsFromFile’:
sqnutil2.c:18415:35: warning: variable ‘vnp_h’ set but not used [-Wunused-but-set-variable]
18415 |   ValNodePtr table, header, line, vnp_h, vnp_l, tmp;
      |                                   ^~~~~
sqnutil2.c: In function ‘AlignmentIntervalToString’:
sqnutil2.c:18779:14: warning: variable ‘target_strand’ set but not used [-Wunused-but-set-variable]
18779 |   Uint1      target_strand;
      |              ^~~~~~~~~~~~~
sqnutil2.c:18778:14: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
18778 |   Int4       seq_len;
      |              ^~~~~~~
sqnutil2.c: In function ‘AdjustForConsensusSpliceCallback’:
sqnutil2.c:20313:33: warning: variable ‘partial5_last’ set but not used [-Wunused-but-set-variable]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                 ^~~~~~~~~~~~~
sqnutil2.c: In function ‘RemoveGIProc’:
sqnutil2.c:20926:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
20926 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sqnutil2.c: In function ‘RemoveBadCodonRecognizedCallback’:
sqnutil2.c:22812:13: warning: variable ‘rcodon’ set but not used [-Wunused-but-set-variable]
22812 |   Uint1     rcodon [4];
      |             ^~~~~~
sqnutil2.c: In function ‘CompareStructuredComment’:
sqnutil2.c:25151:23: warning: variable ‘ovp2’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                       ^~~~
sqnutil2.c:25151:17: warning: variable ‘ovp1’ set but not used [-Wunused-but-set-variable]
25151 |   ObjValNodePtr ovp1, ovp2;
      |                 ^~~~
sqnutil2.c: In function ‘UniqueAndCountValNodeCS’:
sqnutil2.c:25546:17: warning: variable ‘curr’ set but not used [-Wunused-but-set-variable]
25546 |   ValNodePtr    curr;
      |                 ^~~~
sqnutil2.c: In function ‘PerformArticleQuery’:
sqnutil2.c:25810:20: warning: variable ‘debug_mode’ set but not used [-Wunused-but-set-variable]
25810 |   Boolean          debug_mode = FALSE;
      |                    ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil2.c:58:
sqnutil2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil2.c:18065:19: warning: ‘AuthAffilListFree’ defined but not used [-Wunused-function]
18065 | static ValNodePtr AuthAffilListFree (ValNodePtr list)
      |                   ^~~~~~~~~~~~~~~~~
sqnutil2.c:18044:21: warning: ‘AuthAffilNew’ defined but not used [-Wunused-function]
18044 | static AuthAffilPtr AuthAffilNew (CharPtr affil)
      |                     ^~~~~~~~~~~~
sqnutil2.c:16282:19: warning: ‘MakeTranscriptomeIDTokensFromLine’ defined but not used [-Wunused-function]
16282 | static ValNodePtr MakeTranscriptomeIDTokensFromLine (CharPtr line)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:16188:13: warning: ‘RevCompFeatsOnBioseq’ defined but not used [-Wunused-function]
16188 | static void RevCompFeatsOnBioseq (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil2.c:8333:16: warning: ‘DoesSeqEntryAccessionMatchList’ defined but not used [-Wunused-function]
 8333 | static Boolean DoesSeqEntryAccessionMatchList (SeqEntryPtr sep, ValNodePtr accn_list)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c:4684:16: warning: ‘IsNonSeqChar’ defined but not used [-Wunused-function]
 4684 | static Boolean IsNonSeqChar (Char ch, Boolean is_prot)
      |                ^~~~~~~~~~~~
sqnutil2.c: In function ‘ReplaceLocalID’:
sqnutil2.c:23605:22: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 5 and 68 [-Wformat-overflow=]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                      ^~
sqnutil2.c:23605:17: note: directive argument in the range [-32768, 32767]
23605 |   sprintf (tmp, "%s__%d", str, (int) count);
      |                 ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 72 bytes into a destination of size 70
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘DoAddToSecAccn’:
sqnutil2.c:2429:28: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 2429 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                            ^~~~
sqnutil2.c:2429:27: note: directive argument in the range [-2147483648, 2147483647]
 2429 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                           ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘AdjustSeqEntryForConsensusSpliceBioseqCallback’:
sqnutil2.c:20313:48: warning: ‘partial3_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20313 |   Boolean   partial5, partial3, partial5_last, partial3_last, first = TRUE;
      |                                                ^~~~~~~~~~~~~
sqnutil2.c: In function ‘DoAddToSeqHist’:
sqnutil2.c:2593:28: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 2593 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                            ^~~~
sqnutil2.c:2593:27: note: directive argument in the range [-2147483648, 2147483647]
 2593 |         sprintf (numbers, "%*ld", digits, (long) idx);
      |                           ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘ReadAsnFastaOrFlatFileEx’:
sqnutil2.c:7919:52: warning: ‘%s’ directive writing up to 2047 bytes into a region of size 103 [-Wformat-overflow=]
 7919 |           sprintf (note, "No vector hits found for %s", seqid);
      |                                                    ^~
......
11125 |             sap = ReadVecScreenTable (&fc, seqid, annotname);
      |                                            ~~~~~    
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 26 and 2073 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil2.c: In function ‘PrintQualityScoresToBuffer’:
sqnutil2.c:13110:47: warning: ‘, Max: ’ directive writing 7 bytes into a region of size between 2 and 63 [-Wformat-overflow=]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                                               ^~~~~~~
sqnutil2.c:13110:17: note: directive argument in the range [-2147483647, 2147483647]
13110 |   sprintf (buf, ">%s %s (Length: %ld, Min: %ld, Max: %ld)\n", id, title,
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 32 or more bytes (assuming 103) into a destination of size 84
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil3.c: In function ‘BspLinkCDSmRNAbyOverlap’:
sqnutil3.c:528:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
  528 |   Int2               count;
      |                      ^~~~~
sqnutil3.c: In function ‘CautiousSeqEntryCleanup’:
sqnutil3.c:2178:16: warning: variable ‘taxserver’ set but not used [-Wunused-but-set-variable]
 2178 |   Boolean      taxserver;
      |                ^~~~~~~~~
sqnutil3.c: In function ‘AddGapSeqLit’:
sqnutil3.c:3127:19: warning: unused variable ‘gap_chars’ [-Wunused-variable]
 3127 |   CharPtr         gap_chars = "NNNNNNNNNN"
      |                   ^~~~~~~~~
sqnutil3.c: In function ‘ConvertSegSetsToDeltaSequencesInt’:
sqnutil3.c:3382:26: warning: variable ‘prev_sep’ set but not used [-Wunused-but-set-variable]
 3382 |   SeqEntryPtr   sub_sep, prev_sep, next_sep;
      |                          ^~~~~~~~
sqnutil3.c: In function ‘MakeSequinDataFromAlignmentEx’:
sqnutil3.c:4797:32: warning: variable ‘num_sets’ set but not used [-Wunused-but-set-variable]
 4797 |   Int4        index, curr_seg, num_sets;
      |                                ^~~~~~~~
sqnutil3.c:4791:26: warning: variable ‘salp_last’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |                          ^~~~~~~~~
sqnutil3.c:4791:15: warning: variable ‘salp_list’ set but not used [-Wunused-but-set-variable]
 4791 |   SeqAlignPtr salp_list, salp_last;
      |               ^~~~~~~~~
sqnutil3.c: In function ‘ConvertContainedCDSToMiscFeat’:
sqnutil3.c:12824:14: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
12824 |   Uint1      strand;
      |              ^~~~~~
sqnutil3.c: In function ‘OrgNameMatchExceptOldName’:
sqnutil3.c:13713:28: warning: self-comparison always evaluates to false [-Wtautological-compare]
13713 |            || onp2->mgcode != onp2->mgcode
      |                            ^~
sqnutil3.c: In function ‘FindMismatchedCitSubAffiliations’:
sqnutil3.c:19281:14: warning: variable ‘has_seq_submit’ set but not used [-Wunused-but-set-variable]
19281 |   Boolean    has_seq_submit = TRUE;
      |              ^~~~~~~~~~~~~~
sqnutil3.c: In function ‘GetCDSformRNA’:
sqnutil3.c:20267:8: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
20267 |   Int2 count;
      |        ^~~~~
sqnutil3.c: In function ‘FindTextInFlatfileOncaller’:
sqnutil3.c:22140:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
22140 |   Boolean         okay;
      |                   ^~~~
sqnutil3.c: In function ‘CheckForTitleAuthorConflicts’:
sqnutil3.c:23168:14: warning: variable ‘author_conflict’ set but not used [-Wunused-but-set-variable]
23168 |   Boolean    author_conflict = FALSE;
      |              ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘SortVnpByBspProjectId’:
sqnutil3.c:26956:31: warning: the comparison will always evaluate as ‘true’ for the address of ‘vnp2’ will never be NULL [-Waddress]
26956 |     if (vnp1 != NULL &&& vnp2 != NULL) {
      |                               ^~
sqnutil3.c: In function ‘GetDiscrepancyItemTextEx’:
sqnutil3.c:31033:21: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
31033 |   Boolean           special_flag = FALSE;
      |                     ^~~~~~~~~~~~
sqnutil3.c: In function ‘CollectionDateIsInTheFuture’:
sqnutil3.c:34586:20: warning: variable ‘time’ set but not used [-Wunused-but-set-variable]
34586 |   CharPtr     str, time;
      |                    ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sqnutil3.c:62:
sqnutil3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35189:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
35189 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
sqnutil3.c:36777:13: warning: ‘TestLatLonFormatting’ defined but not used [-Wunused-function]
36777 | static void TestLatLonFormatting (FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
sqnutil3.c:34406:22: warning: ‘BetterDateFree’ defined but not used [-Wunused-function]
34406 | static BetterDatePtr BetterDateFree (BetterDatePtr dp)
      |                      ^~~~~~~~~~~~~~
sqnutil3.c:33998:16: warning: ‘GetColon’ defined but not used [-Wunused-function]
33998 | static CharPtr GetColon (CharPtr str)
      |                ^~~~~~~~
sqnutil3.c:17224:24: warning: ‘IntervalPairFree’ defined but not used [-Wunused-function]
17224 | static IntervalPairPtr IntervalPairFree (IntervalPairPtr i)
      |                        ^~~~~~~~~~~~~~~~
sqnutil3.c:10883:16: warning: ‘IsMitochondrionBioseq’ defined but not used [-Wunused-function]
10883 | static Boolean IsMitochondrionBioseq(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘LinkCDSmRNAbyLabelAndLocationCallback’:
sqnutil3.c:876:23: warning: ‘best_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  876 |             } else if (diff < best_diff) {
      |                       ^
sqnutil3.c: In function ‘FillInMissingTraces’:
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:35188:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
35188 |     sprintf (cmmd, "%s -i %s -o %s", tracefetchcmd, path_in, path_out);
      |                           ^~                        ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 9 or more bytes (assuming 8199) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘tRNASameStrandBioseqCallback’:
sqnutil3.c:16769:8: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16769 |     if (strand == Seq_strand_minus) {
      |        ^
sqnutil3.c: In function ‘CheckForDivConflicts’:
sqnutil3.c:8132:15: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8132 |          else ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQFEAT, sfp);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c:8131:13: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 8131 |             ValNodeAddPointer(&(grp_sdp_sfp[num_grp]), OBJ_SEQDESC, sdp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil3.c: In function ‘FindMismatchedComments’:
sqnutil3.c:26612:47: warning: ‘sdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
26612 |     sprintf (fmt, sub_fmt, (CharPtr) sdp->data.ptrvalue);
      |                                      ~~~~~~~~~^~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sqnutil4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/sqnutils.h:48,
                 from sqnutil4.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sqnutil4.c: In function ‘ListClauses’:
sqnutil4.c:8566:43: warning: variable ‘twobefore’ set but not used [-Wunused-but-set-variable]
 8566 |   FeatureClausePtr thisclause, onebefore, twobefore, oneafter, twoafter;
      |                                           ^~~~~~~~~
sqnutil4.c: In function ‘SmashOneTallClause’:
sqnutil4.c:9900:20: warning: variable ‘subclause_featlist’ set but not used [-Wunused-but-set-variable]
 9900 |   ValNodePtr       subclause_featlist;
      |                    ^~~~~~~~~~~~~~~~~~
sqnutil4.c: In function ‘GetFeatureClauseForSeg’:
sqnutil4.c:10787:21: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
10787 |   Int4              start, stop;
      |                     ^~~~~
sqnutil4.c: In function ‘RemoveAutodefObjectsForDesc’:
sqnutil4.c:13618:18: warning: unused variable ‘bssp’ [-Wunused-variable]
13618 |     BioseqSetPtr bssp;
      |                  ^~~~
sqnutil4.c:13617:15: warning: unused variable ‘bsp’ [-Wunused-variable]
13617 |     BioseqPtr bsp;
      |               ^~~
sqnutil4.c: In function ‘ConvertProtToImpFunc’:
sqnutil4.c:15072:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15072 |   Uint2         entityID;
      |                 ^~~~~~~~
sqnutil4.c: In function ‘ExtraCDSCreationActions’:
sqnutil4.c:15989:28: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15989 |   SeqEntryPtr        psep, nsep;
      |                            ^~~~
sqnutil4.c: In function ‘TESTDisplayQualCombo’:
sqnutil4.c:17099:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
17099 |   Int4             val;
      |                    ^~~
sqnutil4.c: In function ‘ConvertCDSToMatPeptideForOverlappingCDS’:
sqnutil4.c:18589:15: warning: variable ‘crp’ set but not used [-Wunused-but-set-variable]
18589 |   CdRegionPtr crp;
      |               ^~~
sqnutil4.c: In function ‘AddNewUniqueAnnotations’:
sqnutil4.c:18780:39: warning: variable ‘sap_tmp_next’ set but not used [-Wunused-but-set-variable]
18780 |   SeqAnnotPtr sap, sap_next, sap_tmp, sap_tmp_next, sap_copy, last_sap;
      |                                       ^~~~~~~~~~~~
sqnutil4.c: In function ‘AssignBioseqToLineageGroup’:
sqnutil4.c:19443:27: warning: variable ‘vnp_last’ set but not used [-Wunused-but-set-variable]
19443 |   ValNodePtr   list, vnp, vnp_last = NULL;
      |                           ^~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sqnutil4.c:58:
sqnutil4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sqnutil4.c:64:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:17248:13: warning: ‘TESTDisplayList’ defined but not used [-Wunused-function]
17248 | static void TESTDisplayList (ValNodePtr new_list)
      |             ^~~~~~~~~~~~~~~
sqnutil4.c:17219:19: warning: ‘ExpandOneComboListUsingAllPresentQuals’ defined but not used [-Wunused-function]
17219 | static ValNodePtr ExpandOneComboListUsingAllPresentQuals (QualComboPtr q)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:16930:16: warning: ‘RemoveFieldFromUniqBioSrcGrpList’ defined but not used [-Wunused-function]
16930 | static Boolean RemoveFieldFromUniqBioSrcGrpList (ValNodePtr list, FieldTypePtr field)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sqnutil4.c:10029:19: warning: ‘RemoveAllButLastCDS’ defined but not used [-Wunused-function]
10029 | static ValNodePtr RemoveAllButLastCDS (
      |                   ^~~~~~~~~~~~~~~~~~~
sqnutil4.c:9998:13: warning: ‘SmashTallClauses’ defined but not used [-Wunused-function]
 9998 | static void SmashTallClauses (
      |             ^~~~~~~~~~~~~~~~
sqnutil4.c:9834:13: warning: ‘RemoveFeats’ defined but not used [-Wunused-function]
 9834 | static void RemoveFeats (
      |             ^~~~~~~~~~~
sqnutil4.c:5211:13: warning: ‘CountFeatures’ defined but not used [-Wunused-function]
 5211 | static Int4 CountFeatures (
      |             ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF subutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from subutil.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
subutil.c: In function ‘AddSeqLitToBioseq’:
subutil.c:769:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  769 |     ValNodePtr vnp;
      |                ^~~
subutil.c: In function ‘AddReferenceToSegmentedEntry’:
subutil.c:1163:22: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 1163 |     SeqEntryPtr tmp, prev;
      |                      ^~~~
subutil.c: In function ‘GetDNAConv’:
subutil.c:1624:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1624 |        dnaconv[*ptr] = *ptr;
      |                ^~~~
subutil.c: In function ‘GetProteinConv’:
subutil.c:1646:17: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1646 |        protconv[*ptr] = *ptr;
      |                 ^~~~
subutil.c: In function ‘AddBasesToByteStore’:
subutil.c:1669:26: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1669 |         residue = dnaconv[ch];
      |                          ^
subutil.c: In function ‘AddAAsToByteStore’:
subutil.c:1700:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1700 |         residue = aaconv[ch];
      |                         ^
subutil.c: In function ‘CitArtBuild’:
subutil.c:2683:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 2683 |     ValNodePtr vnp, tmp;
      |                     ^~~
subutil.c: In function ‘MakeRNAFeature’:
subutil.c:3639:29: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 3639 |             if (AA_for_tRNA != '\0')
      |                             ^~
subutil.c:3639:17: note: did you mean to dereference the pointer?
 3639 |             if (AA_for_tRNA != '\0')
      |                 ^
At top level:
subutil.c:3546:20: warning: ‘TranslateCdRegionNew’ defined but not used [-Wunused-function]
 3546 | static SeqEntryPtr TranslateCdRegionNew (
      |                    ^~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF edutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/edutil.h:188,
                 from edutil.c:365:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
edutil.c: In function ‘SeqLocsToDeltaSeqs’:
edutil.c:795:14: warning: variable ‘sip’ set but not used [-Wunused-but-set-variable]
  795 |     SeqIdPtr sip;
      |              ^~~
edutil.c: In function ‘SeqLocCopyPart’:
edutil.c:2243:13: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
 2243 |     Boolean done, started, wasa_null, hada_null;
      |             ^~~~
edutil.c: In function ‘IndexedSeqFeatsCopy’:
edutil.c:2400:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2400 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqFeatsCopy’:
edutil.c:2504:16: warning: variable ‘region’ set but not used [-Wunused-but-set-variable]
 2504 |     ValNodePtr region;
      |                ^~~~~~
edutil.c: In function ‘SeqLocInsert’:
edutil.c:3686:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 3686 |     Int4 diff, numpnt, i, tpos;
      |          ^~~~
edutil.c: In function ‘SeqEdRecreateDeletedFeats’:
edutil.c:4212:19: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 4212 |   SeqFeatPtr      sfp;
      |                   ^~~
edutil.c: In function ‘SeqEdSeqLocInsert’:
edutil.c:4512:8: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 4512 |   Int4 diff, numpnt, i, tpos;
      |        ^~~~
edutil.c: In function ‘SeqEdSeqLocDelete’:
edutil.c:5069:10: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 5069 |     Int4 diff;
      |          ^~~~
edutil.c: In function ‘SeqEdInsertAdjustFeat’:
edutil.c:5300:7: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 5300 |       && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c: In function ‘SeqEdDeleteFromBsp’:
edutil.c:6485:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6485 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6548:11: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 6548 |           && sfp->data.choice == SEQFEAT_CDREGION)
edutil.c:6437:21: warning: variable ‘merge_mode’ set but not used [-Wunused-but-set-variable]
 6437 |   Boolean           merge_mode;
      |                     ^~~~~~~~~~
edutil.c:6428:21: warning: variable ‘feats_altered’ set but not used [-Wunused-but-set-variable]
 6428 |   Boolean           feats_altered = FALSE;
      |                     ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff1.c: In function ‘asn2ff_print’:
asn2ff1.c:289:17: warning: unused variable ‘dsp’ [-Wunused-variable]
  289 |  DescrStructPtr dsp = NULL;
      |                 ^~~
asn2ff1.c: In function ‘Asn2ffJobCreate’:
asn2ff1.c:351:18: warning: unused variable ‘itemID’ [-Wunused-variable]
  351 |  Uint4           itemID = 0;
      |                  ^~~~~~
asn2ff1.c: In function ‘SeqEntryToEntrez’:
asn2ff1.c:498:15: warning: unused variable ‘slp’ [-Wunused-variable]
  498 |  SeqLocPtr    slp = NULL;
      |               ^~~
asn2ff1.c: In function ‘SeqLocToFlat’:
asn2ff1.c:1518:19: warning: unused variable ‘itemID’ [-Wunused-variable]
 1518 |  Uint4            itemID=0;
      |                   ^~~~~~
asn2ff1.c: In function ‘asn2ff_setup’:
asn2ff1.c:1579:12: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 1579 |  BioseqPtr bsp;
      |            ^~~
asn2ff1.c: In function ‘PrintStatusLine’:
asn2ff1.c:2197:15: warning: unused variable ‘ptr’ [-Wunused-variable]
 2197 |  CharPtr   u, ptr=NULL;
      |               ^~~
asn2ff1.c: In function ‘asn2gb_setup’:
asn2ff1.c:2403:24: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2403 |   if (ajp->genome_view && gbp->map == FALSE || ajp->contig_view) {
At top level:
asn2ff1.c:2189:13: warning: ‘PrintStatusLine’ defined but not used [-Wunused-function]
 2189 | static void PrintStatusLine(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |             ^~~~~~~~~~~~~~~
asn2ff1.c:2171:16: warning: ‘find_user_object’ defined but not used [-Wunused-function]
 2171 | static Boolean find_user_object(BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~
asn2ff1.c:816:19: warning: ‘SeqEntryToLinkStrEx’ defined but not used [-Wunused-function]
  816 | static LinkStrPtr SeqEntryToLinkStrEx(Asn2ffJobPtr ajp, SeqEntryPtr sep, LinkStrPtr lsp, Uint1 format)
      |                   ^~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff1.c:45:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff1.c: In function ‘print_taxinfo’:
asn2ff1.c:4356:19: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 4356 |   sprintf(tmp, "%d", gcode);
      |                   ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff1.c: In function ‘asn2embl_setup’:
asn2ff1.c:2754:7: warning: ‘max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2754 |    if (max == index+1) {
      |       ^
asn2ff1.c: In function ‘asn2gp_setup’:
asn2ff1.c:2942:4: warning: ‘feat_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2942 |    for (index=0; index < feat_num; index++) {
      |    ^~~
asn2ff1.c: In function ‘SeqEntryToGBFlatNoSeq’:
asn2ff1.c:1292:15: warning: ‘rsult’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1292 |     Boolean   rsult;
      |               ^~~~~
asn2ff1.c: In function ‘PrintSequence’:
asn2ff1.c:5218:25: warning: ‘%9ld’ directive writing between 9 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 5218 |       sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start));
      |                         ^~~~
asn2ff1.c:5218:24: note: directive argument in the range [-2147483648, 2147483647]
 5218 |       sprintf(num_ptr, "%9ld", (long) (total+1 - loc_start));
      |                        ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from asn2ff1.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from asn2ff2.c:216:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff2.c: In function ‘GetStrForBankit’:
asn2ff2.c:518:9: warning: unused variable ‘i’ [-Wunused-variable]
  518 |  Int2   i=0, ptrlen = 0;
      |         ^
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:769:34: warning: unused variable ‘string’ [-Wunused-variable]
  769 |  CharPtr buf = NULL, ptr = NULL, string=NULL, new_string=NULL, str=NULL;
      |                                  ^~~~~~
asn2ff2.c: In function ‘GP_GetSeqDescrComms’:
asn2ff2.c:1163:10: warning: unused variable ‘got_comment’ [-Wunused-variable]
 1163 |  Boolean got_comment=FALSE;
      |          ^~~~~~~~~~~
asn2ff2.c: At top level:
asn2ff2.c:1358:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1358 | static ChoicePID(SeqIdPtr sid)
      |        ^~~~~~~~~
asn2ff2.c: In function ‘GetGibbsqCommentLength’:
asn2ff2.c:1600:7: warning: unused variable ‘gibbsq’ [-Wunused-variable]
 1600 |  Int4 gibbsq=0, total;
      |       ^~~~~~
asn2ff2.c: In function ‘GatherDescrByChoice’:
asn2ff2.c:1864:8: warning: variable ‘bspID’ set but not used [-Wunused-but-set-variable]
 1864 |  Uint2 bspID;
      |        ^~~~~
At top level:
asn2ff2.c:1190:16: warning: ‘GetSPBlock’ defined but not used [-Wunused-function]
 1190 | static CharPtr GetSPBlock (Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~
asn2ff2.c:680:16: warning: ‘GetEvidence’ defined but not used [-Wunused-function]
  680 | static CharPtr GetEvidence(Asn2ffJobPtr ajp, GBEntryPtr gbp)
      |                ^~~~~~~~~~~
asn2ff2.c:232:16: warning: ‘has_comment’ defined but not used [-Wunused-variable]
  232 | static Boolean has_comment;
      |                ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff2.c:218:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff2.c: In function ‘GetCommentByChoice’:
asn2ff2.c:829:8: warning: ‘is_other’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |     if (is_other == TRUE  && mfp->completeness) {
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff3.c: In function ‘PutGeneFirst’:
asn2ff3.c:1073:26: warning: unused variable ‘qual_temp’ [-Wunused-variable]
 1073 |  GBQualPtr gbqual, qual, qual_temp=NULL, qual_gene=NULL;
      |                          ^~~~~~~~~
asn2ff3.c:1072:10: warning: unused variable ‘still_looking’ [-Wunused-variable]
 1072 |  Boolean still_looking=TRUE;
      |          ^~~~~~~~~~~~~
asn2ff3.c: In function ‘mRNAEvidenceComment’:
asn2ff3.c:1157:9: warning: unused variable ‘Locus_id’ [-Wunused-variable]
 1157 |  Int4   Locus_id = 0;
      |         ^~~~~~~~
asn2ff3.c: In function ‘Add_gene_id’:
asn2ff3.c:2717:24: warning: format ‘%s’ expects argument of type ‘char *’, but argument 3 has type ‘Nlm_VoidPtr’ {aka ‘void *’} [-Wformat=]
 2717 |  sprintf(val, "GeneID:%s", vnp->data.ptrvalue);
      |                       ~^   ~~~~~~~~~~~~~~~~~~
      |                        |            |
      |                        char *       Nlm_VoidPtr {aka void *}
      |                       %p
asn2ff3.c: In function ‘Add_trid’:
asn2ff3.c:3123:9: warning: unused variable ‘gi’ [-Wunused-variable]
 3123 |  BIG_ID gi = -1;
      |         ^~
At top level:
asn2ff3.c:2702:13: warning: ‘Add_gene_id’ defined but not used [-Wunused-function]
 2702 | static void Add_gene_id (GeneStructPtr gsp, SeqFeatPtr sfp_out)
      |             ^~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff3.c:39:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘Add_dbxref.isra.0’:
../include/ncbimem.h:232:23: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
asn2ff3.c:216:10: note: ‘val’ was declared here
  216 |  CharPtr val;
      |          ^~~
asn2ff3.c: In function ‘GettRNAaa’:
asn2ff3.c:1619:11: warning: ‘seq_code’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1619 |     ptr = Get3LetterSymbol(seq_code, table, trna->aa, error_msgs);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
asn2ff3.c: In function ‘mRNAEvidenceComment’:
../include/ncbistr.h:331:19: warning: ‘ne_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
asn2ff3.c:1153:32: note: ‘ne_name’ was declared here
 1153 |  CharPtr   method = NULL, ptr, ne_name;
      |                                ^~~~~~~
asn2ff3.c: In function ‘ConvertToNAImpFeat’:
asn2ff3.c:2254:23: warning: ‘%ld’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                       ^~~
asn2ff3.c:2254:22: note: directive argument in the range [1, 255]
 2254 |     sprintf(buf_ptr, "%ld", (long) (cdr->frame));
      |                      ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff3.c:39:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff4.c: In function ‘FlatLocPoint’:
asn2ff4.c:437:15: warning: variable ‘order’ set but not used [-Wunused-but-set-variable]
  437 |  static Uint1 order[NUM_SEQID];
      |               ^~~~~
asn2ff4.c: In function ‘do_FlatLoc’:
asn2ff4.c:1122:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1122 |    if ( ! FlatVirtLoc( bsp, slp))
      |       ^
asn2ff4.c: At top level:
asn2ff4.c:1347:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
 1347 | static CmpImpFeat (ImpFeatPtr f1, ImpFeatPtr f2)
      |        ^~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1659:14: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
 1659 |  GeneRefPtr  grp;
      |              ^~~
asn2ff4.c: In function ‘MatchNAGeneToFeat’:
asn2ff4.c:2196:17: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2196 |  NoteStructPtr  nsp; /* UNUSED */
      |                 ^~~
asn2ff4.c: In function ‘MatchAAGeneToFeat’:
asn2ff4.c:2367:18: warning: variable ‘nsp’ set but not used [-Wunused-but-set-variable]
 2367 |  NoteStructPtr   nsp; /* UNUSED */
      |                  ^~~
asn2ff4.c: In function ‘SortOrganizeFeat’:
asn2ff4.c:2457:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2457 |  if (ofp == NULL)
      |  ^~
asn2ff4.c:2459:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2459 |   if (ofp->sfpListsize > 0 && ofp->sortListsize < ofp->sfpListsize) {
      |   ^~
asn2ff4.c: In function ‘OrganizeSeqFeat’:
asn2ff4.c:2578:2: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2578 |  if (ajp->ignore_top)
      |  ^~
asn2ff4.c:2580:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2580 |   gsc.seglevels = 1;
      |   ^~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff4.c:273:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff4.c: In function ‘CheckNewSfpLoc.isra.0’:
asn2ff4.c:1767:7: warning: ‘slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1767 |   if (SeqLocLen(slp) <= BioseqGetLen(bsp)) {
      |       ^~~~~~~~~~~~~~
asn2ff4.c: In function ‘CreateImpFeatFromProt’:
asn2ff4.c:1723:18: warning: ‘%d’ directive writing between 1 and 3 bytes into a region of size 2 [-Wformat-overflow=]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                  ^~
asn2ff4.c:1723:17: note: directive argument in the range [1, 255]
 1723 |    sprintf(buf, "%d", cdr->frame);
      |                 ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 2
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff4.c: In function ‘FlatLocHalfCaret’:
asn2ff4.c:388:35: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 2 and 22 [-Wformat-overflow=]
  388 |     sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)",
      |                                   ^~~
asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647]
  388 |     sprintf(localbuf,"(%ld.%ld)..(%ld.%ld)",
      |                      ^~~~~~~~~~~~~~~~~~~~~~
asn2ff4.c:388:22: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff4.c:273:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 53 bytes into a destination of size 30
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff5.c: In function ‘format_cit_sub’:
asn2ff5.c:1023:36: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1023 |             format == EMBLPEPT_FMT && afp->choice == 1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
asn2ff5.c:926:41: warning: variable ‘need_space’ set but not used [-Wunused-but-set-variable]
  926 |   Boolean need_comma = FALSE, /*UNUSED*/need_space = TRUE;
      |                                         ^~~~~~~~~~
asn2ff5.c: In function ‘format_thesis’:
asn2ff5.c:1213:20: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1213 |  Boolean /*UNUSED*/embl_format = FALSE;
      |                    ^~~~~~~~~~~
asn2ff5.c: In function ‘format_book’:
asn2ff5.c:1296:10: warning: variable ‘embl_format’ set but not used [-Wunused-but-set-variable]
 1296 |  Boolean embl_format = FALSE;
      |          ^~~~~~~~~~~
asn2ff5.c: In function ‘format_jourarticle’:
asn2ff5.c:1680:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1680 |    if (ip->pages != NULL)
      |       ^
asn2ff5.c: In function ‘StripParanthesis’:
asn2ff5.c:2124:12: warning: value computed is not used [-Wunused-value]
 2124 |    temp++; *ptr_in++;
      |            ^~~~~~~~~
asn2ff5.c: In function ‘PostARefErrMessage’:
asn2ff5.c:3005:20: warning: variable ‘ignore_this’ set but not used [-Wunused-but-set-variable]
 3005 |  Boolean /*UNUSED*/ignore_this, submit=FALSE, error;
      |                    ^~~~~~~~~~~
asn2ff5.c: At top level:
asn2ff5.c:188:26: warning: ‘GetSubmitterName’ declared ‘static’ but never defined [-Wunused-function]
  188 | static CharPtr /*UNUSED*/GetSubmitterName PROTO ((Uint1 format, ValNodePtr pub));
      |                          ^~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff5.c:177:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff5.c: In function ‘FlatJournal’:
asn2ff5.c:1121:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~
asn2ff5.c:1121:16: note: directive argument in the range [1, 2147483647]
 1121 |    sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1115:19: warning: ‘%ld’ directive writing between 1 and 10 bytes into a region of size 9 [-Wformat-overflow=]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~
asn2ff5.c:1115:16: note: directive argument in the range [1, 2147483647]
 1115 |    sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from asn2ff5.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 14 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff5.c:1193:31: warning: ‘afp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1193 |    temp = StringMove(temp,afp -> country);
      |                           ~~~~^~~~~~~~~~
asn2ff5.c:1051:11: note: ‘afp’ was declared here
 1051 |  AffilPtr afp;
      |           ^~~
asn2ff5.c: In function ‘CheckPubs’:
asn2ff5.c:2772:5: warning: ‘status’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2772 |     PostARefErrMessage (ajp, bsp, psp, NULL, status, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2ff6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff6.c: In function ‘AddGBQual’:
asn2ff6.c:1327:18: warning: variable ‘note’ set but not used [-Wunused-but-set-variable]
 1327 |  GBQualPtr curq, note = NULL;
      |                  ^~~~
asn2ff6.c: In function ‘FlatOrganelle’:
asn2ff6.c:1483:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1483 |      if (! retval )
      |      ^~
asn2ff6.c:1486:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1486 |       break;
      |       ^~~~~
asn2ff6.c: In function ‘BioseqGetGBDivCodeEx’:
asn2ff6.c:1700:23: warning: variable ‘diff’ set but not used [-Wunused-but-set-variable]
 1700 |  Int2 tech, /*UNUSED*/diff, retval = 0;
      |                       ^~~~
asn2ff6.c: In function ‘GR_PrintPubs’:
asn2ff6.c:2297:41: warning: unused variable ‘stop’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                         ^~~~
asn2ff6.c:2297:32: warning: unused variable ‘start’ [-Wunused-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |                                ^~~~~
asn2ff6.c:2297:13: warning: variable ‘pmid’ set but not used [-Wunused-but-set-variable]
 2297 |  Int4 muid, pmid, pat_seqid=0, start=0, stop=0;
      |             ^~~~
asn2ff6.c:2296:10: warning: unused variable ‘descr’ [-Wunused-variable]
 2296 |  CharPtr descr = NULL;
      |          ^~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:17: warning: variable ‘base_locus_max’ set but not used [-Wunused-but-set-variable]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                 ^~~~~~~~~~~~~~
asn2ff6.c: In function ‘ValidateOtherAccession’:
asn2ff6.c:2886:29: warning: unused variable ‘FiveNum’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |                             ^~~~~~~
asn2ff6.c:2886:10: warning: unused variable ‘FirstLetter’ [-Wunused-variable]
 2886 |  Boolean FirstLetter=FALSE, FiveNum = FALSE;
      |          ^~~~~~~~~~~
asn2ff6.c: In function ‘AddExtraAccessions’:
asn2ff6.c:3498:20: warning: variable ‘ncbi’ set but not used [-Wunused-but-set-variable]
 3498 |  Boolean /*UNUSED*/ncbi = FALSE;
      |                    ^~~~
At top level:
asn2ff6.c:2883:13: warning: ‘ValidateOtherAccession’ defined but not used [-Wunused-function]
 2883 | static Int2 ValidateOtherAccession(CharPtr new_buf, CharPtr orig_buf)
      |             ^~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from asn2ff6.c:347:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff6.c: In function ‘ValidateLocus’:
asn2ff6.c:2786:44: warning: ‘exp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2786 |  Int2 /*UNUSED*/base_locus_max, buf_index, exp, length, num_of_digits;
      |                                            ^~~
asn2ff6.c: In function ‘MakeBaseLocusAwp’:
asn2ff6.c:3070:49: warning: ‘num_of_digits’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3070 |  Int2  index, length, base_locus_max, name_len, num_of_digits, num_seg;
      |                                                 ^~~~~~~~~~~~~
asn2ff6.c: In function ‘GetLocusPartsAwp’:
asn2ff6.c:3449:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3449 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3447:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3447 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3372:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3372 |        sprintf(gbp->locus, "%-16s", buf_acc);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3370:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3370 |        sprintf(gbp->locus, "%-10s", buf_acc);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3313:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3313 |      sprintf(gbp->locus, "%-16s", buf_acc);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3311:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3311 |      sprintf(gbp->locus, "%-10s", buf_acc);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3270:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3270 |       sprintf(gbp->locus, "%-16s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2ff6.c:3268:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3268 |       sprintf(gbp->locus, "%-10s", buf_acc);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ff6.h:134,
                 from asn2ff6.c:347:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 11 and 26 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb1.c: In function ‘IsWholeWordSubstr’:
asn2gnb1.c:2202:19: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 2202 |     Boolean left, right;
      |                   ^~~~~
asn2gnb1.c: In function ‘s_LocusGetBaseName’:
asn2gnb1.c:2350:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2350 |     else
      |     ^~~~
asn2gnb1.c:2352:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2352 |       newLength = segNameLen - deleteChars;
      |       ^~~~~~~~~
asn2gnb1.c: In function ‘DoOneSection’:
asn2gnb1.c:2522:24: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 2522 |   IntAsn2gbSectPtr     iasp;
      |                        ^~~~
asn2gnb1.c:2514:24: warning: variable ‘bkmask’ set but not used [-Wunused-but-set-variable]
 2514 |   BlockMask            bkmask;
      |                        ^~~~~~
asn2gnb1.c: In function ‘Count2Seg’:
asn2gnb1.c:3438:18: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 3438 |   Int4           to;
      |                  ^~
asn2gnb1.c:3436:18: warning: variable ‘parent’ set but not used [-Wunused-but-set-variable]
 3436 |   BioseqPtr      parent;
      |                  ^~~~~~
asn2gnb1.c: At top level:
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
 3714 | static ModeFlags flagTable [] = {
      |                                 ^
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c:3714:33: warning: missing braces around initializer [-Wmissing-braces]
asn2gnb1.c: In function ‘SeqIdWriteForTable’:
asn2gnb1.c:5808:13: warning: variable ‘pdb’ set but not used [-Wunused-but-set-variable]
 5808 |             pdb = NULL, general = NULL, gi = NULL;
      |             ^~~
asn2gnb1.c:5807:40: warning: variable ‘patent’ set but not used [-Wunused-but-set-variable]
 5807 |   SeqIdPtr  accn = NULL, local = NULL, patent = NULL,
      |                                        ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘DoImmediateFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:6951:19: note: in expansion of macro ‘MAX’
 6951 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c:6930:20: warning: variable ‘is_www’ set but not used [-Wunused-but-set-variable]
 6930 |   Boolean          is_www;
      |                    ^~~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb1.c:43:
asn2gnb1.c: In function ‘asn2gnbk_format’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb1.c:7072:19: note: in expansion of macro ‘MAX’
 7072 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb1.c: In function ‘asn2gnbk_cleanup’:
asn2gnb1.c:7118:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 7118 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
asn2gnb1.c: In function ‘SeqEntryToGnbk’:
asn2gnb1.c:7304:22: warning: variable ‘userdata’ set but not used [-Wunused-but-set-variable]
 7304 |   Pointer            userdata = NULL;
      |                      ^~~~~~~~
asn2gnb1.c:7299:22: warning: variable ‘gbseq’ set but not used [-Wunused-but-set-variable]
 7299 |   GBSeqPtr           gbseq = NULL;
      |                      ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb1.c:58:
asn2gnb1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb1.c: In function ‘PrintFtableIntervals’:
asn2gnb1.c:5463:28: warning: ‘
   ’ directive writing 1 byte into a region of size between 0 and 62 [-Wformat-overflow=]
 5463 |   sprintf (str, "%s\t%s\t%s\n", str1, str2, label);
      |                            ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 4 or more bytes (assuming 66) into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb1.c:5487:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5487 |       sprintf (str, "%s\t%s\n", str1, str2);
      |                              ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb1.c:43:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 65 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb2.c: In function ‘s_LocusAddSuffix’:
asn2gnb2.c:217:11: warning: variable ‘ch’ set but not used [-Wunused-but-set-variable]
  217 |   Char    ch;
      |           ^~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:1361:66: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1361 |       } else if ((moltype >= 2 && moltype <= 8) || moltype >= 10 && moltype <= 11) {
      |                                                    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~
asn2gnb2.c: In function ‘IsSuccessor’:
asn2gnb2.c:1742:15: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |               ^~
asn2gnb2.c:1742:10: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |          ^
asn2gnb2.c:1742:34: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                                  ^~
asn2gnb2.c:1742:28: note: did you mean to dereference the pointer?
 1742 |   while (accp != '\0'  &&  prevp != '\0') {
      |                            ^
asn2gnb2.c: In function ‘IsProjectAccn’:
asn2gnb2.c:1767:38: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                      ^~
asn2gnb2.c:1767:34: note: did you mean to dereference the pointer?
 1767 |     for (ptr = acc, letters = 0; ptr != '\0'  &&  IS_ALPHA(*ptr); ++ptr, ++letters) continue;
      |                                  ^
asn2gnb2.c: In function ‘AddDblinkBlock’:
asn2gnb2.c:2892:22: warning: variable ‘parentID’ set but not used [-Wunused-but-set-variable]
 2892 |   Int4               parentID;
      |                      ^~~~~~~~
asn2gnb2.c: In function ‘AddSPBlock’:
asn2gnb2.c:3409:14: warning: implicit declaration of function ‘PrintDate’ [-Wimplicit-function-declaration]
 3409 |     string = PrintDate (spb->created);
      |              ^~~~~~~~~
asn2gnb2.c:3409:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3409 |     string = PrintDate (spb->created);
      |            ^
asn2gnb2.c:3417:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3417 |     string = PrintDate (spb->sequpd);
      |            ^
asn2gnb2.c:3424:12: warning: assignment to ‘Nlm_CharPtr’ {aka ‘char *’} from ‘int’ makes pointer from integer without a cast [-Wint-conversion]
 3424 |     string = PrintDate (spb->annotupd);
      |            ^
asn2gnb2.c: In function ‘AddSourceOrganismBlock’:
asn2gnb2.c:5056:22: warning: variable ‘common’ set but not used [-Wunused-but-set-variable]
 5056 |   CharPtr            common;
      |                      ^~~~~~
asn2gnb2.c: In function ‘GetRefsOnBioseq’:
asn2gnb2.c:5893:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5893 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb2.c:5890:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5890 |   Boolean            split;
      |                      ^~~~~
asn2gnb2.c:5884:22: warning: variable ‘right’ set but not used [-Wunused-but-set-variable]
 5884 |   Int4               right;
      |                      ^~~~~
asn2gnb2.c:5878:22: warning: variable ‘left’ set but not used [-Wunused-but-set-variable]
 5878 |   Int4               left;
      |                      ^~~~
asn2gnb2.c: In function ‘AddLocusBlock’:
asn2gnb2.c:239:24: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 6 [-Wformat-overflow=]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                        ^~
asn2gnb2.c:239:23: note: directive argument in the range [2, 2147483647]
  239 |   sprintf(segCountStr,"%d",awp->numsegs);
      |                       ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 6
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:244:25: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 4 [-Wformat-overflow=]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                         ^~~~
asn2gnb2.c:244:23: note: directive argument in the range [0, 65535]
  244 |     sprintf(segSuffix,"S%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 32770 bytes into a destination of size 5
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:246:24: warning: ‘%0*d’ directive writing between 1 and 32768 bytes into a region of size 5 [-Wformat-overflow=]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                        ^~~~
asn2gnb2.c:246:23: note: directive argument in the range [0, 65535]
  246 |     sprintf(segSuffix,"%0*d",segCountStrLen,awp->seg);
      |                       ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 5
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1514:48: warning: ‘" title="Jump to the comment...’ directive writing 69 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1514 |       sprintf (sect, "<li><a href=\"#comment_%s\" title=\"Jump to the comment section of this record\">Comment</a></li>",
      |                                                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 92 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1518:46: warning: ‘" title="Jump to the feature...’ directive writing 68 bytes into a region of size between 66 and 106 [-Wformat-overflow=]
 1518 |     sprintf (sect, "<li><a href=\"#feature_%s\" title=\"Jump to the feature table of this record\">Features</a></li>",
      |                                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 91 and 131 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1527:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1527 |       sprintf (sect, "<li><a href=\"#genome_%s\" title=\"Jump to the genome section of this record\">Genome</a></li>",
      |                                                                                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1532:117: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1532 |       sprintf (sect, "<li><a href=\"#contig_%s\" title=\"Jump to the contig section of this record\">Contig</a></li>",
      |                                                                                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 89 and 129 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1579:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1579 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) nextGi, seqid);
      |                                                                                 ^~                                  ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 203 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1587:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1587 |       sprintf (sect, "<li class=\"next\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Next</a></li>", (long) awp->nextGi, seqid);
      |                                                                                 ^~                                       ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 67 and 204 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1600:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 68 and 77 [-Wformat-overflow=]
 1600 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) prevGi, seqid);
      |                                                                                 ^~                                      ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 207 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb2.c:1608:81: warning: ‘%s’ directive writing up to 127 bytes into a region of size between 67 and 77 [-Wformat-overflow=]
 1608 |       sprintf (sect, "<li class=\"prev\"><a href=\"#locus_%ld\" title=\"Jump to %s\">Previous</a></li>", (long) awp->prevGi, seqid);
      |                                                                                 ^~                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb2.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 71 and 208 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb3.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb3.c: In function ‘GetStatusForRefTrack’:
asn2gnb3.c:796:22: warning: variable ‘urf’ set but not used [-Wunused-but-set-variable]
  796 |   UserFieldPtr  ufp, urf = NULL;
      |                      ^~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:2656:22: warning: variable ‘is_wgs’ set but not used [-Wunused-but-set-variable]
 2656 |   Boolean            is_wgs = FALSE;
      |                      ^~~~~~
asn2gnb3.c: In function ‘GetSourcesOnBioseq’:
asn2gnb3.c:5472:22: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 5472 |   Uint1              strand;
      |                      ^~~~~~
asn2gnb3.c:5470:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5470 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:5468:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 5468 |   Boolean            split;
      |                      ^~~~~
asn2gnb3.c: In function ‘AddSourceFeatBlock’:
asn2gnb3.c:5989:22: warning: unused variable ‘sip’ [-Wunused-variable]
 5989 |   SeqIdPtr           sip;
      |                      ^~~
asn2gnb3.c: In function ‘GetFeatsOnCdsProduct’:
asn2gnb3.c:6446:22: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6446 |   Boolean            isRefSeq;
      |                      ^~~~~~~~
asn2gnb3.c: In function ‘GetRemoteFeatsOnCdsProduct’:
asn2gnb3.c:6595:20: warning: variable ‘lastsfp’ set but not used [-Wunused-but-set-variable]
 6595 |   SeqFeatPtr       lastsfp;
      |                    ^~~~~~~
asn2gnb3.c:6594:20: warning: variable ‘lastsap’ set but not used [-Wunused-but-set-variable]
 6594 |   SeqAnnotPtr      lastsap;
      |                    ^~~~~~~
asn2gnb3.c:6593:20: warning: variable ‘lastright’ set but not used [-Wunused-but-set-variable]
 6593 |   Int4             lastright;
      |                    ^~~~~~~~~
asn2gnb3.c:6592:20: warning: variable ‘lastleft’ set but not used [-Wunused-but-set-variable]
 6592 |   Int4             lastleft;
      |                    ^~~~~~~~
asn2gnb3.c:6591:20: warning: variable ‘isRefSeq’ set but not used [-Wunused-but-set-variable]
 6591 |   Boolean          isRefSeq;
      |                    ^~~~~~~~
asn2gnb3.c: In function ‘GetFeatsOnBioseq’:
asn2gnb3.c:6895:22: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 6895 |   Int4               start;
      |                      ^~~~~
asn2gnb3.c:6866:22: warning: variable ‘icp’ set but not used [-Wunused-but-set-variable]
 6866 |   IntCdsBlockPtr     icp;
      |                      ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb3.c:57:
asn2gnb3.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb3.c:1582:16: warning: ‘nsWGSGapsString’ defined but not used [-Wunused-variable]
 1582 | static CharPtr nsWGSGapsString = "The strings of n's in this record represent gaps between contigs or uncallable bases.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c:1581:16: warning: ‘nsAreGapsString’ defined but not used [-Wunused-variable]
 1581 | static CharPtr nsAreGapsString = "The strings of n's in this record represent gaps between contigs, and the length of each string corresponds to the length of the gap.";
      |                ^~~~~~~~~~~~~~~
asn2gnb3.c: In function ‘AddCommentBlock’:
asn2gnb3.c:3429:29: warning: ‘nm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3429 |                         if (IS_protdb_accession (nm)) {
      |                             ^~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb4.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockQuals’:
asn2gnb4.c:3723:50: warning: "/*" within comment [-Wcomment]
 3723 |                 StringChr (str + 1, '(') == NULL /* && StringChr (str, ',') != NULL */) {
      |                                                   
asn2gnb4.c:3101:24: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 3101 |   Boolean              split;
      |                        ^~~~~
asn2gnb4.c:3042:24: warning: variable ‘at_end’ set but not used [-Wunused-but-set-variable]
 3042 |   Boolean              at_end = FALSE;
      |                        ^~~~~~
asn2gnb4.c: In function ‘FF_asn2gb_www_featkey_Ex’:
asn2gnb4.c:5325:16: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
 5325 |   CharPtr      prefix = "?";
      |                ^~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:6572:22: warning: variable ‘split’ set but not used [-Wunused-but-set-variable]
 6572 |   Boolean            split;
      |                      ^~~~~
In file included from ../include/ncbi.h:58,
                 from asn2gnb4.c:42:
asn2gnb4.c: In function ‘DoImmediateRemoteFeatureFormat’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8796:19: note: in expansion of macro ‘MAX’
 8796 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
asn2gnb4.c: In function ‘FormatFeatureQuals’:
../include/ncbistd.h:255:22: warning: comparison between ‘enum <anonymous>’ and ‘enum <anonymous>’ [-Wenum-compare]
  255 | #define MAX(a,b) ((a)>=(b)?(a):(b))
      |                      ^~
asn2gnb4.c:8869:19: note: in expansion of macro ‘MAX’
 8869 |   max = (size_t) (MAX (ASN2GNBK_TOTAL_SOURCE, ASN2GNBK_TOTAL_FEATUR));
      |                   ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb4.c:57:
asn2gnb4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb4.c: In function ‘FormatFeatureBlockEx’:
asn2gnb4.c:7695:26: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7695 |               oldscope = SeqEntrySetScope (sep);
      |                          ^~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb5.c: In function ‘FormatCitBookArt’:
asn2gnb5.c:2108:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2108 |   ValNodePtr   vnp;
      |                ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb5.c:57:
asn2gnb5.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb5.c: In function ‘FormatReferenceBlock’:
asn2gnb5.c:2553:22: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                      ^~~
asn2gnb5.c:2553:19: note: directive argument in the range [-2147483648, 2147483647]
 2553 |       sprintf(buf,"%s%ld ", " ", (long) pat_seqid);
      |                   ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 14 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb5.c:2550:22: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 9 [-Wformat-overflow=]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                      ^~~
asn2gnb5.c:2550:19: note: directive argument in the range [-2147483648, 2147483647]
 2550 |       sprintf(buf,"%s%ld%s", "/", (long) pat_seqid, ", ");
      |                   ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb5.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 15 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2gnb6.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gnb6.c: In function ‘FlatLocElement’:
asn2gnb6.c:2546:27: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2546 |         if (sintp->to > 0 &&
      |             ~~~~~~~~~~~~~~^~
 2547 |             (sintp->to != sintp->from ||
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2548 |              sintp->if_from != NULL ||
      |              ~~~~~~~~~~~~~~~~~~~~~~~~~
 2549 |              sintp->if_to != NULL) ||
      |              ~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatContigBlock’:
asn2gnb6.c:5701:20: warning: variable ‘dspnext’ set but not used [-Wunused-but-set-variable]
 5701 |   DeltaSeqPtr      dspnext;
      |                    ^~~~~~~
asn2gnb6.c: In function ‘ProcessGapSpecialFormat’:
asn2gnb6.c:6041:13: warning: unused variable ‘sip’ [-Wunused-variable]
 6041 |   SeqIdPtr  sip;
      |             ^~~
asn2gnb6.c: In function ‘FormatSequenceBlock’:
asn2gnb6.c:6168:21: warning: variable ‘iasp’ set but not used [-Wunused-but-set-variable]
 6168 |   IntAsn2gbSectPtr  iasp;
      |                     ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2gnb6.c:57:
asn2gnb6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2gnb6.c:76:16: warning: ‘link_lat_lon’ defined but not used [-Wunused-variable]
   76 | static CharPtr link_lat_lon = "https://www.ncbi.nlm.nih.gov/projects/Sequin/latlonview.html?";
      |                ^~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatSourceFeatBlock’:
asn2gnb6.c:4322:22: warning: ‘+’ directive writing 1 byte into a region of size between 0 and 128 [-Wformat-overflow=]
 4322 |   sprintf (tmp, "%s%s+%s%s", ns, tokens [0], ew, tokens [2]);
      |                      ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 131) into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c: In function ‘FormatBasecountBlock’:
asn2gnb6.c:5365:58: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 10 and 50 [-Wformat-overflow=]
 5365 |     sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;",
      |                                                          ^~~
asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647]
 5365 |     sprintf (buf, "Sequence %ld BP; %ld A; %ld C; %ld G; %ld T; %ld other;",
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gnb6.c:5365:19: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gnb6.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 44 and 104 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ftusrstr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ftusrstr.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfeat.c
gbfeat.c: In function ‘CkLabelType’:
gbfeat.c:1465:33: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1465 |   for (str = bptr; *str != '\0' && IS_ALPHA(*str) || IS_DIGIT(*str)
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbftglob.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbparint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/parsegb.h:57,
                 from gbparint.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbparint.c: In function ‘Nlm_gbparselex’:
gbparint.c:2134:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2134 |                     if (*current_col != '\0')
      |                        ^
gbparint.c: In function ‘Nlm_gbparselex_ver’:
gbparint.c:2520:24: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2520 |                     if (*current_col != '\0')
      |                        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpars.c
utilpars.c:112:39: warning: missing braces around initializer [-Wmissing-braces]
  112 |  ParFlat_AA_array[ParFlat_TOTAL_AA] = {
      |                                       ^
  113 |        "Ala", 'A',
      |        {         }
  114 |         "Asx", 'B',
      |         {         }
  115 |         "Cys", 'C',
      |         {         }
  116 |         "Asp", 'D',
      |         {         }
  117 |         "Glu", 'E',
      |         {         }
  118 |         "Phe", 'F',
      |         {         }
  119 |         "Gly", 'G',
      |         {         }
  120 |         "His", 'H',
      |         {         }
  121 |         "Ile", 'I',
      |         {         }
  122 |         "Xle", 'J',  /* was - notice no 'J', breaks naive meaning of index -Karl */
      |         {         }
  123 |         "Lys", 'K',
      |         {         }
  124 |         "Leu", 'L',
      |         {         }
  125 |         "Met", 'M',
      |         {         }
  126 |         "Asn", 'N',
      |         {         }
  127 |         "Pyl", 'O',  /* was - no 'O' */
      |         {         }
  128 |         "Pro", 'P',
      |         {         }
  129 |         "Gln", 'Q',
      |         {         }
  130 |         "Arg", 'R',
      |         {         }
  131 |         "Ser", 'S',
      |         {         }
  132 |         "Thr", 'T',
      |         {         }
  133 |         "Val", 'V',
      |         {         }
  134 |         "Trp", 'W',
      |         {         }
  135 |         "Sec", 'U', /* was - not in iupacaa */
      |         {         }
  136 |         "Xxx", 'X',
      |         {         }
  137 |         "Tyr", 'Y',
      |         {         }
  138 |         "Glx", 'Z',
      |         {         }
  139 |         "TERM", '*', /* not in iupacaa */ /*changed by Tatiana 06.07.95?`*/
      |         {          }
  140 |         "OTHER", 'X'};
      |         {           }
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF utilpub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from utilpub.c:13:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
utilpub.c: In function ‘FindCit’:
utilpub.c:998:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
  998 |  ImpFeatPtr  /*UNUSED*/ifp;
      |                        ^~~
utilpub.c: In function ‘ChangeCitQual’:
utilpub.c:1053:53: warning: variable ‘pub’ set but not used [-Wunused-but-set-variable]
 1053 |  ValNodePtr  vnp, pubset = NULL, pub_min, /*UNUSED*/pub;
      |                                                     ^~~
utilpub.c:1052:34: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 1052 |  ValNodePtr PNTR vnpp, /*UNUSED*/descr;
      |                                  ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ffprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asn2ffg.h:200,
                 from ../include/asn2ffp.h:48,
                 from ffprint.c:127:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ffprint.c: In function ‘FFBSPrint’:
ffprint.c:347:19: warning: unused variable ‘byte_sp’ [-Wunused-variable]
  347 |     ByteStorePtr  byte_sp = NULL;
      |                   ^~~~~~~
At top level:
ffprint.c:420:16: warning: ‘ff_print_insert’ defined but not used [-Wunused-function]
  420 | static CharPtr ff_print_insert(CharPtr str, CharPtr ins)
      |                ^~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from ffprint.c:127:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF wprint.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
wprint.c: In function ‘LocPrintGenome’:
wprint.c:1696:14: warning: unused variable ‘sep’ [-Wunused-variable]
 1696 |  SeqEntryPtr sep = NULL;
      |              ^~~
wprint.c:1695:25: warning: unused variable ‘b’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |                         ^
wprint.c:1695:13: warning: unused variable ‘bsp’ [-Wunused-variable]
 1695 |  BioseqPtr  bsp = NULL, b = NULL;
      |             ^~~
wprint.c:1692:34: warning: unused variable ‘temp’ [-Wunused-variable]
 1692 |  static Char  buf[14], val[166], temp[166];
      |                                  ^~~~
At top level:
wprint.c:1692:34: warning: ‘temp’ defined but not used [-Wunused-variable]
wprint.c:79:13: warning: ‘link_gdb_map’ defined but not used [-Wunused-variable]
   79 | static Char link_gdb_map[MAX_WWWBUF];
      |             ^~~~~~~~~~~~
wprint.c:77:13: warning: ‘link_pir’ defined but not used [-Wunused-variable]
   77 | static Char link_pir[MAX_WWWBUF];
      |             ^~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from wprint.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
wprint.c: In function ‘PrintDate’:
wprint.c:188:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  188 |    sprintf(day, "%d", (int) (date -> data[3] ));
      |                    ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4 bytes into a destination of size 3
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
wprint.c: In function ‘www_db_xref’:
wprint.c:969:20: warning: ‘%d’ directive writing between 1 and 6 bytes into a region of size between 4 and 9 [-Wformat-overflow=]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                    ^~
wprint.c:969:17: note: directive argument in the range [-32768, 32767]
  969 |     sprintf(id, "%d%d", id1, id2);
      |                 ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from wprint.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:19: note: ‘prefix’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1358:13: note: ‘link’ was declared here
 1358 |  CharPtr s, link, prefix, ss;
      |             ^~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
wprint.c: In function ‘www_xref_button’:
../include/ncbistr.h:331:19: warning: ‘prefix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1398:19: note: ‘prefix’ was declared here
 1398 |  CharPtr s, link, prefix, ss;
      |                   ^~~~~~
In file included from ../include/ncbi.h:62,
                 from wprint.c:46:
../include/ncbistr.h:331:19: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
wprint.c:1398:13: note: ‘link’ was declared here
 1398 |  CharPtr s, link, prefix, ss;
      |             ^~~~
wprint.c: In function ‘PrintSPBlock’:
wprint.c:1570:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |      AddLink(s);
      |      ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF satutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/satutil.h:12,
                 from satutil.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
satutil.c: In function ‘CopyFeatureFromAlign’:
satutil.c:1011:10: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
 1011 |  Boolean check_gap;
      |          ^~~~~~~~~
At top level:
satutil.c:168:16: warning: ‘bk_map_one_location’ defined but not used [-Wunused-function]
  168 | static Boolean bk_map_one_location(SeqLocPtr source_loc, SeqAlignPtr align, SeqIdPtr target_sip, Boolean check_gap, Int4Ptr r_start, Int4Ptr r_stop, SeqLocPtr PNTR head_slp)
      |                ^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from seqmgr.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmgr.c: In function ‘SeqEntrySetScope’:
seqmgr.c:311:13: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
  311 |     Boolean found;
      |             ^~~~~
seqmgr.c: In function ‘ClearBioseqFindCache’:
seqmgr.c:897:14: warning: variable ‘smp’ set but not used [-Wunused-but-set-variable]
  897 |   SeqMgrPtr  smp;
      |              ^~~
seqmgr.c: In function ‘GetUniGeneIDForSeqId’:
seqmgr.c:3676:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3676 |     if(StringCmp(db_tag->db, "BSNR") == 0)
      |     ^~
seqmgr.c:3678:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3678 |         if(StringCmp(db_tag->db, "HUMGEN") == 0)
      |         ^~
seqmgr.c: In function ‘SeqMgrGetExtraDataForOmdp’:
seqmgr.c:3736:14: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 3736 |   ObjMgrPtr  omp;
      |              ^~~
seqmgr.c: In function ‘CheckForTransSplice’:
seqmgr.c:5657:14: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
 5657 |   SeqLocPtr  prev, tmp;
      |              ^~~~
seqmgr.c: In function ‘SeqEntryAsnOut’:
seqmgr.c:11799:41: warning: variable ‘aopp_desc’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                                         ^~~~~~~~~
seqmgr.c:11799:23: warning: variable ‘aopp_feat’ set but not used [-Wunused-but-set-variable]
11799 |    AsnOptionPtr       aopp_feat = NULL, aopp_desc = NULL;
      |                       ^~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqmgr.c:63:
seqmgr.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from objmgr.c:51:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmgr.c: In function ‘ObjMgrReapOne’:
objmgr.c:2727:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2727 |     if (omp->reaping)   /* protect against recursion caused by ObjMgrSendMsg */
      |     ^~
objmgr.c:2730:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2730 |         lowest = UINT4_MAX;
      |         ^~~~~~
objmgr.c: In function ‘ObjMgrDeSelectStructFunc’:
objmgr.c:3767:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3767 |     if (next != NULL)
      |     ^~
objmgr.c:3770:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |         ObjMgrSendDeSelMsg (omp, ssp->entityID, ssp->itemID, ssp->itemtype, ssp->regiontype, ssp->region);
      |         ^~~~~~~~~~~~~~~~~~
objmgr.c: In function ‘ObjMgrSelectFunc2’:
objmgr.c:4031:22: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 4031 |         Boolean      retval = FALSE;
      |                      ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gather.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gather.c: In function ‘AttachDataProc’:
gather.c:4827:30: warning: variable ‘into_seqentry’ set but not used [-Wunused-but-set-variable]
 4827 |     Boolean no_good = FALSE, into_seqentry = FALSE;
      |                              ^~~~~~~~~~~~~
gather.c: In function ‘GatherSeqFeat’:
gather.c:1570:44: warning: ‘newid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1570 |                                     tslp = SeqLocReMap(newid, slp, cbp->loc, offset, rev);
      |                                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c:1495:17: warning: ‘numcheck’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1495 |                 for (j = 0; ((j < numcheck) && (! takeit) && (!stop_now)); j++)
      |                 ^~~
gather.c:1530:86: warning: ‘max_interval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1530 |                                 lrdp = (GatherRangePtr)MemNew((size_t)((max_interval + 20) * sizeof(GatherRange)));
      |                                                                                      ^
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from gather.c:44:
../include/ncbimem.h:232:23: warning: ‘lrdp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
gather.c:1404:38: note: ‘lrdp’ was declared here
 1404 |     GatherRangePtr rdp = NULL, trdp, lrdp;
      |                                      ^~~~
gather.c: In function ‘gather_align_data’:
gather.c:2280:11: warning: ‘h_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2280 |         if(!(h_stop < m_start || h_start > m_stop))    /*it is within the range*/
      |           ^
gather.c:2280:12: warning: ‘h_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2280 |         if(!(h_stop < m_start || h_start > m_stop))    /*it is within the range*/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c:2219:15: warning: ‘master_loc’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2219 |     SeqLocPtr master_loc, m_loc;
      |               ^~~~~~~~~~
gather.c:2470:90: warning: ‘mag_val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2470 |                                         stop = inverse ? SeqLocLen(master_loc) * mag_val : SeqLocLen(master_loc)/mag_val;
      |                                                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
gather.c: In function ‘GatherBioseqFunc’:
gather.c:3307:53: warning: ‘tlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3307 |                                 rdp->right = offset + tlen - 1;
      |                                              ~~~~~~~^~~~~~
gather.c:3280:39: warning: ‘trunc_r’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3280 |                                    if (trunc_r)
      |                                       ^
gather.c:3285:40: warning: ‘trunc_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3285 |                                     if (trunc_l)
      |                                        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accmmdbs.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accmmdbs.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acccn3ds.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from acccn3ds.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lsqfetch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
lsqfetch.c: In function ‘ChangeLocalToGenbank’:
lsqfetch.c:1403:21: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1403 |   sprintf (tmp, "gb|%s", id);
      |                     ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/lsqfetch.h:110,
                 from lsqfetch.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF findrepl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from findrepl.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF codon.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/codon.h:61,
                 from codon.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
codon.c: In function ‘make_cds_paragraph’:
codon.c:262:7: warning: variable ‘space_len’ set but not used [-Wunused-but-set-variable]
  262 |  Int4 space_len, i;
      |       ^~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzcoll.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from jzcoll.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
jzcoll.c: In function ‘load_default_matrix’:
jzcoll.c:99:13: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |       ~~~~~~^~~
jzcoll.c:99:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
   99 |    ss[pchars[i]][pchars[j]] = webb_blosum62[i][j];
      |                  ~~~~~~^~~
jzcoll.c:101:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |      ~~~~~~^~~
jzcoll.c:101:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  101 |   ss[pchars[i]]['*'] = ss['*'][pchars[i]] = -4;
      |                                ~~~~~~^~~
jzcoll.c: In function ‘GetUseThisGi’:
jzcoll.c:143:10: warning: unused variable ‘retval’ [-Wunused-variable]
  143 |  Boolean retval=FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘buffer_for_feature’:
jzcoll.c:514:7: warning: unused variable ‘i’ [-Wunused-variable]
  514 |  Int2 i=0;
      |       ^
jzcoll.c: In function ‘ProcessTextInsertion’:
jzcoll.c:878:7: warning: variable ‘last_ins’ set but not used [-Wunused-but-set-variable]
  878 |  Int4 last_ins;
      |       ^~~~~~~~
jzcoll.c: In function ‘satcollfunc’:
jzcoll.c:1723:12: warning: variable ‘head’ set but not used [-Wunused-but-set-variable]
 1723 |  SeqLocPtr head;
      |            ^~~~
jzcoll.c:1721:8: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 1721 |  Uint1 strand;
      |        ^~~~~~
jzcoll.c:1720:7: warning: variable ‘current_pos’ set but not used [-Wunused-but-set-variable]
 1720 |  Int4 current_pos;
      |       ^~~~~~~~~~~
jzcoll.c:1714:12: warning: unused variable ‘slp’ [-Wunused-variable]
 1714 |  SeqLocPtr slp = NULL;
      |            ^~~
jzcoll.c: In function ‘coll_align_data’:
jzcoll.c:2631:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 2631 |     sprintf(buf, "%d", gilist->data.intvalue);
      |                   ~^   ~~~~~~~~~~~~~~~~~~~~~
      |                    |               |
      |                    int             Nlm_Int8 {aka long int}
      |                   %ld
jzcoll.c: In function ‘collect_anpnode_with_option’:
jzcoll.c:3053:13: warning: unused variable ‘prev’ [-Wunused-variable]
 3053 |  ValNodePtr prev = NULL;
      |             ^~~~
jzcoll.c: In function ‘ck_seqfeat_extra’:
jzcoll.c:3414:10: warning: unused variable ‘has_gb’ [-Wunused-variable]
 3414 |  Boolean has_gb = FALSE, has_med = FALSE;
      |          ^~~~~~
jzcoll.c: In function ‘collseqfunc’:
jzcoll.c:3768:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3768 |      if(omtp->labelfunc !=NULL)
      |      ^~
jzcoll.c:3770:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3770 |       fnp->landmark = check_feature_for_landmark(chp->thislabel, chp->gdata, sfp, gcp, chp->priority);
      |       ^~~
jzcoll.c: In function ‘load_open_close_sts_mark’:
jzcoll.c:4010:10: warning: variable ‘collected’ set but not used [-Wunused-but-set-variable]
 4010 |  Boolean collected = FALSE;
      |          ^~~~~~~~~
jzcoll.c: In function ‘FeatNodeCompProc’:
jzcoll.c:4225:20: warning: variable ‘gr2’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |                    ^~~
jzcoll.c:4225:15: warning: variable ‘gr1’ set but not used [-Wunused-but-set-variable]
 4225 |   GatherRange gr1, gr2;
      |               ^~~
At top level:
jzcoll.c:2316:16: warning: ‘stop_collecting_alignment’ defined but not used [-Wunused-function]
 2316 | static Boolean stop_collecting_alignment(ValNodePtr anp_list, Int4 max_num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
jzcoll.c:1654:16: warning: ‘collect_sequence_label’ defined but not used [-Wunused-function]
 1654 | static Boolean collect_sequence_label(Uint1 format)
      |                ^~~~~~~~~~~~~~~~~~~~~~
jzcoll.c: In function ‘load_text’:
jzcoll.c:421:41: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  421 |                             stdaa_res = SeqMapTableConvert(smtp, m_res);
      |                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jzmisc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jzmisc.h:86,
                 from jzmisc.c:23:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF maputil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from maputil.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
maputil.c: In function ‘load_gene_list’:
maputil.c:690:8: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  690 |  Uint1 val;
      |        ^~~
maputil.c: In function ‘gmarkfunc’:
maputil.c:985:13: warning: variable ‘syn’ set but not used [-Wunused-but-set-variable]
  985 |  ValNodePtr syn = NULL;
      |             ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mconsist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/mconsist.h:4,
                 from mconsist.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macroapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macroapi.c: In function ‘AdvancedStringCompare’:
macroapi.c:4463:23: warning: variable ‘init_target_match_len’ set but not used [-Wunused-but-set-variable]
 4463 |   Int4    len1, len2, init_target_match_len = 0, target_match_len = 0;
      |                       ^~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘RemoveGBQualMatch’:
macroapi.c:6981:27: warning: variable ‘does_match’ set but not used [-Wunused-but-set-variable]
 6981 |   Boolean   rval = FALSE, does_match, do_remove;
      |                           ^~~~~~~~~~
macroapi.c: In function ‘ParseCodonsRecognizedFromCommaDelimitedList’:
macroapi.c:7726:41: warning: pointer targets in passing argument 1 of ‘ExpandWobbleCodon’ differ in signedness [-Wpointer-sign]
 7726 |         wobble_list = ExpandWobbleCodon(codon);
      |                                         ^~~~~
      |                                         |
      |                                         Nlm_Uint1 * {aka unsigned char *}
macroapi.c:7636:46: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
 7636 | static ValNodePtr ExpandWobbleCodon (CharPtr codon)
macroapi.c: In function ‘GetQualFromFeatureAnyType’:
macroapi.c:8537:8: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 8536 |   if (str == NULL
      |       ~~~~~~~~~~~
 8537 |        && (field->choice == FeatQualChoice_legal_qual && field->data.intvalue == Feat_qual_legal_pseudo)
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:8681:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 8681 |       sprintf (buf, "%d", vnp->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~
      |                       |            |
      |                       int          Nlm_Int8 {aka long int}
      |                      %ld
macroapi.c: In function ‘SetNameInPrimerList’:
macroapi.c:10682:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10682 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘SetSeqInPrimerList’:
macroapi.c:10703:21: warning: variable ‘prev_pp’ set but not used [-Wunused-but-set-variable]
10703 |   PCRPrimerPtr  pp, prev_pp = NULL;
      |                     ^~~~~~~
macroapi.c: In function ‘GetGenomeProjectIdFromBioseq’:
macroapi.c:12881:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12881 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘RemoveGenomeProjectIdFromBioseq’:
macroapi.c:12916:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12916 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘SetGenomeProjectIdOnBioseq’:
macroapi.c:12957:27: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12957 |           sprintf (buf, "%d", ufp->data.intvalue);
      |                          ~^   ~~~~~~~~~~~~~~~~~~
      |                           |            |
      |                           int          Nlm_Int8 {aka long int}
      |                          %ld
macroapi.c: In function ‘GetPubFieldFromPub’:
macroapi.c:15043:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15043 |         sprintf (str, "%d", the_pub->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                         |                |
      |                         int              Nlm_Int8 {aka long int}
      |                        %ld
macroapi.c: In function ‘GetCitListsForSeqEntry’:
macroapi.c:15825:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
15825 |   Uint2           entityID;
      |                   ^~~~~~~~
macroapi.c:15823:19: warning: variable ‘okay’ set but not used [-Wunused-but-set-variable]
15823 |   Boolean         okay;
      |                   ^~~~
macroapi.c: In function ‘GetPubclassQualFromPub’:
macroapi.c:18324:11: warning: unused variable ‘str’ [-Wunused-variable]
18324 |   CharPtr str = NULL;
      |           ^~~
macroapi.c: In function ‘GetPubMLStatus’:
macroapi.c:18681:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
18681 |   CitSubPtr  csp;
      |              ^~~
macroapi.c: In function ‘CollectDBLinkObjectsForApply’:
macroapi.c:20029:72: warning: unused variable ‘tmp_tail’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                                        ^~~~~~~~
macroapi.c:20029:55: warning: unused variable ‘tmp_list’ [-Wunused-variable]
20029 |   ValNodePtr     target_list = NULL, bsp_list = NULL, tmp_list = NULL, tmp_tail = NULL, vnp;
      |                                                       ^~~~~~~~
macroapi.c: In function ‘DoConvertActionToObjectListEx’:
macroapi.c:20844:20: warning: unused variable ‘already_added’ [-Wunused-variable]
20844 |   Boolean          already_added, field_change;
      |                    ^~~~~~~~~~~~~
macroapi.c: In function ‘ApplyPartial5SetActionToSeqFeat’:
macroapi.c:25749:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25749 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartial3SetActionToSeqFeat’:
macroapi.c:25872:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25872 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘ApplyPartialBothSetActionToSeqFeat’:
macroapi.c:25939:16: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
25939 |   Uint1        strand;
      |                ^~~~~~
macroapi.c: In function ‘FindPosBeforeFeat’:
macroapi.c:26236:15: warning: variable ‘regulator’ set but not used [-Wunused-but-set-variable]
26236 |   SeqFeatPtr  regulator = NULL, candidate;
      |               ^~~~~~~~~
macroapi.c: In function ‘PerformAutofixInSeqEntry’:
macroapi.c:29471:8: warning: unused variable ‘num_created’ [-Wunused-variable]
29471 |   Int4 num_created = 0;
      |        ^~~~~~~~~~~
macroapi.c: In function ‘AddFileDescriptors’:
macroapi.c:29871:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
29871 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘ApplyMacroToSeqEntryExEx’:
macroapi.c:31907:28: warning: too many arguments for format [-Wformat-extra-args]
31907 |           fprintf (log_fp, "Instantiated protein titles\n", num);
      |                            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘PreprocessAddDescriptorListMacro’:
macroapi.c:32020:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
32020 |     while (sdp = SeqDescAsnRead (aip, NULL)) {
      |            ^~~
macroapi.c: In function ‘FieldTypeFromString’:
macroapi.c:32370:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
32370 |     if (ft == NULL && StringsAreEquivalent(str, "location") || StringsAreEquivalent(str, "genome")) {
      |         ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘SummarizeRemoveOutsideAction’:
macroapi.c:32939:11: warning: unused variable ‘case_insensitive’ [-Wunused-variable]
32939 |   CharPtr case_insensitive = " (case insensitive)";
      |           ^~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetObjectTableForTabTable’:
macroapi.c:37508:63: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
37508 |   ValNodePtr obj_table = NULL, obj_row, last_obj = NULL, tmp, last = NULL;
      |                                                               ^~~~
macroapi.c: In function ‘FormatMultipleDestinationErrorMessage’:
macroapi.c:37987:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
37987 |     sprintf (buf, "%d", vnp->data.intvalue + 1);
      |                    ~^   ~~~~~~~~~~~~~~~~~~~~~~
      |                     |                      |
      |                     int                    Nlm_Int8 {aka long int}
      |                    %ld
macroapi.c: In function ‘CheckObjTableForExistingText’:
macroapi.c:38084:14: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
38084 |   Uint2      entityID;
      |              ^~~~~~~~
macroapi.c: In function ‘FixSuspectProductNamesInEntrezGene’:
macroapi.c:40352:18: warning: variable ‘prefix’ set but not used [-Wunused-but-set-variable]
40352 |   CharPtr        prefix = NULL;
      |                  ^~~~~~
In file included from ../include/tax3api.h:51,
                 from macroapi.c:67:
macroapi.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
macroapi.c:37233:16: warning: ‘IsFieldTypeProteinDesc’ defined but not used [-Wunused-function]
37233 | static Boolean IsFieldTypeProteinDesc (FieldTypePtr ft)
      |                ^~~~~~~~~~~~~~~~~~~~~~
macroapi.c:27097:13: warning: ‘GetDescriptorTypeFromDescriptorChoice’ defined but not used [-Wunused-function]
27097 | static Int4 GetDescriptorTypeFromDescriptorChoice (Uint1 descriptor_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:21298:13: warning: ‘GetFieldsFromAECR’ defined but not used [-Wunused-function]
21298 | static void GetFieldsFromAECR (AECRActionPtr act, FieldTypePtr PNTR pField, ValNodePtr PNTR pFieldPair)
      |             ^~~~~~~~~~~~~~~~~
macroapi.c:20787:16: warning: ‘NoFieldChange’ defined but not used [-Wunused-function]
20787 | static Boolean NoFieldChange (CharPtr new_val, ValNodePtr vnp, FieldTypePtr field_from, StringConstraintPtr scp, BatchExtraPtr batch_extra)
      |                ^~~~~~~~~~~~~
macroapi.c:16014:13: warning: ‘InitBatchExtraForAECRActionAndObjectList’ defined but not used [-Wunused-function]
16014 | static void InitBatchExtraForAECRActionAndObjectList (BatchExtraPtr batch_extra, AECRActionPtr action, ValNodePtr object_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:10389:16: warning: ‘HasMultiplePrimerSets’ defined but not used [-Wunused-function]
10389 | static Boolean HasMultiplePrimerSets (CharPtr value)
      |                ^~~~~~~~~~~~~~~~~~~~~
macroapi.c:5482:16: warning: ‘DoesLocationMatchConstraint’ defined but not used [-Wunused-function]
 5482 | static Boolean DoesLocationMatchConstraint (SeqLocPtr slp, LocationConstraintPtr lcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:4590:13: warning: ‘TestAdvancedStringMatch’ defined but not used [-Wunused-function]
 4590 | static void TestAdvancedStringMatch (void)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
macroapi.c:2806:13: warning: ‘OriginFromOriginName’ defined but not used [-Wunused-function]
 2806 | static Int4 OriginFromOriginName (CharPtr origin_name)
      |             ^~~~~~~~~~~~~~~~~~~~
macroapi.c:1200:16: warning: ‘IsObjectAppropriateForFieldPair’ defined but not used [-Wunused-function]
 1200 | static Boolean IsObjectAppropriateForFieldPair (Uint1 choice, Pointer data, FieldPairTypePtr fieldpair)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetSourceQualFromBioSource’:
macroapi.c:11026:25: warning: ‘subfield’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11026 |                   str = GetThreeFieldSubfield (ssp->name, subfield);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘GetMultipleSourceQualsFromBioSource’:
macroapi.c:11174:23: warning: ‘subfield’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11174 |                 str = GetThreeFieldSubfield (ssp->name, subfield);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macroapi.c: In function ‘RemoveSourceQualFromBioSource’:
macroapi.c:11278:50: warning: ‘subfield’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11278 |   Int4 orgmod_subtype = -1, subsrc_subtype = -1, subfield;
      |                                                  ^~~~~~~~
macroapi.c: In function ‘AlsoChangeMrnaForObject’:
macroapi.c:20637:10: warning: ‘mrna’ may be used uninitialized in this function [-Wmaybe-uninitialized]
20637 |       if (mrna != NULL) {
      |          ^
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from macroapi.c:45:
In function ‘memset’,
    inlined from ‘MacroMakeGeneXrefs’ at macroapi.c:28641:3,
    inlined from ‘ApplyMacroToSeqEntryExEx’ at macroapi.c:31730:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:71:10: warning: ‘__builtin_memset’ offset [4121, 4128] from the object at ‘ld’ is out of the bounds of referenced subobject ‘lid’ with type ‘struct loginfo’ at offset 0 [-Warray-bounds]
   71 |   return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘memset’,
    inlined from ‘MacroRemoveXrefs’ at macroapi.c:28578:3,
    inlined from ‘ApplyMacroToSeqEntryExEx’ at macroapi.c:31723:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:71:10: warning: ‘__builtin_memset’ offset [4121, 4128] from the object at ‘ld’ is out of the bounds of referenced subobject ‘lid’ with type ‘struct loginfo’ at offset 0 [-Warray-bounds]
   71 |   return __builtin___memset_chk (__dest, __ch, __len, __bos0 (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpedit.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpedit.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpedit.c: In function ‘SeqAlignInsert’:
salpedit.c:162:12: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
  162 |  StdSegPtr ssp;
      |            ^~~
salpedit.c:161:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
  161 |         DenseDiagPtr ddp;
      |                      ^~~
At top level:
salpedit.c:4120:18: warning: ‘build_slp_for_gcontig’ defined but not used [-Wunused-function]
 4120 | static SeqLocPtr build_slp_for_gcontig (BioseqPtr gcontig_bsp, SeqIdPtr gcontig_sip)
      |                  ^~~~~~~~~~~~~~~~~~~~~
salpedit.c:4073:17: warning: ‘get_best_id’ defined but not used [-Wunused-function]
 4073 | static SeqIdPtr get_best_id(BioseqPtr bsp)
      |                 ^~~~~~~~~~~
salpedit.c:4046:16: warning: ‘second_seq_has_gap’ defined but not used [-Wunused-function]
 4046 | static Boolean second_seq_has_gap(BioseqPtr s_bsp)
      |                ^~~~~~~~~~~~~~~~~~
salpedit.c:4016:18: warning: ‘dup_mul_locs’ defined but not used [-Wunused-function]
 4016 | static SeqLocPtr dup_mul_locs(SeqLocPtr slp)
      |                  ^~~~~~~~~~~~
salpedit.c:3968:18: warning: ‘create_fake_bioseq’ defined but not used [-Wunused-function]
 3968 | static BioseqPtr create_fake_bioseq(SeqLocPtr seq_loc, CharPtr fake_name)
      |                  ^~~~~~~~~~~~~~~~~~
salpedit.c:3937:13: warning: ‘reverse_seqloc’ defined but not used [-Wunused-function]
 3937 | static void reverse_seqloc (SeqLocPtr s_loc)
      |             ^~~~~~~~~~~~~~
salpedit.c:3850:13: warning: ‘save_output’ defined but not used [-Wunused-function]
 3850 | static void save_output (SeqIdPtr sip, CharPtr f_name, SeqAlignPtr align)
      |             ^~~~~~~~~~~
salpedit.c:3836:13: warning: ‘get_align_list_len’ defined but not used [-Wunused-function]
 3836 | static Int4 get_align_list_len(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~~~~~~
salpedit.c:2939:20: warning: ‘open_annot’ defined but not used [-Wunused-function]
 2939 | static SeqAnnotPtr open_annot(CharPtr f_name)
      |                    ^~~~~~~~~~
salpedit.c:2835:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
 2835 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salpedit.c:2653:16: warning: ‘FigureAlignRange’ defined but not used [-Wunused-function]
 2653 | static Boolean FigureAlignRange(SeqAlignPtr align, SeqLocPtr m_loc, SeqLocPtr s_loc)
      |                ^~~~~~~~~~~~~~~~
salpedit.c:1665:16: warning: ‘free_diag_in_list’ defined but not used [-Wunused-function]
 1665 | static Boolean free_diag_in_list(ValNodePtr ddp_list, DenseDiagPtr ddp)
      |                ^~~~~~~~~~~~~~~~~
salpedit.c:1605:16: warning: ‘is_overlap’ defined but not used [-Wunused-function]
 1605 | static Boolean is_overlap(BoolPtr status, Int4 from, Int4 len)
      |                ^~~~~~~~~~
salpedit.c:1560:13: warning: ‘filter_wrong_orientation’ defined but not used [-Wunused-function]
 1560 | static void filter_wrong_orientation (SeqAlignPtr align, Boolean same_orient)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
salpedit.c:1479:16: warning: ‘filter_this_seg’ defined but not used [-Wunused-function]
 1479 | static Boolean filter_this_seg (DenseDiagPtr curr, DenseDiagPtr PNTR h_list, Int2 order)
      |                ^~~~~~~~~~~~~~~
salpedit.c:1422:16: warning: ‘convert_ddp_to_array’ defined but not used [-Wunused-function]
 1422 | static Int4Ptr convert_ddp_to_array (ValNodePtr ddp_list, Uint1 strand, Int2 s_order, Int4Ptr p_num)
      |                ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1387:14: warning: ‘has_too_much_overlap’ defined but not used [-Wunused-function]
 1387 | static Uint1 has_too_much_overlap (Int4 start_1, Int4 stop_1, Int4 start_2, Int4 stop_2)
      |              ^~~~~~~~~~~~~~~~~~~~
salpedit.c:1281:13: warning: ‘attach_new_align’ defined but not used [-Wunused-function]
 1281 | static void attach_new_align(SeqAlignPtr new_salp, SeqAlignPtr PNTR old) {
      |             ^~~~~~~~~~~~~~~~
salpedit.c:1169:20: warning: ‘JZSeqAlignMerge’ defined but not used [-Wunused-function]
 1169 | static SeqAlignPtr JZSeqAlignMerge(SeqAlignPtr f_align, SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr t_align)
      |                    ^~~~~~~~~~~~~~~
salpedit.c:254:16: warning: ‘is_gap_segment’ defined but not used [-Wunused-function]
  254 | static Boolean is_gap_segment(Int4Ptr c_starts, Int2 dim)
      |                ^~~~~~~~~~~~~~
salpedit.c:158:20: warning: ‘SeqAlignInsert’ defined but not used [-Wunused-function]
  158 | static SeqAlignPtr SeqAlignInsert(SeqIdPtr from_id, Int4 from, Int4 to, Uint1 strand, SeqIdPtr to_id, Int4 pos, SeqAlignPtr head, Boolean merge, Boolean add_insertion)
      |                    ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpstat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salpstat.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:310:10: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  310 |   if(dsp && (((mmatches || mmismatches) && bsp_1 && bsp_2)) || !(mmatches || mmismatches)) {
      |      ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignScoreFix’:
salpstat.c:172:20: warning: ‘sp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |      sp_last->next = (ScorePtr) MemNew(sizeof(Score));
salpstat.c: In function ‘DenseSegStats’:
salpstat.c:382:7: warning: ‘spp_2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  382 |       SeqPortFree(spp_2);
      |       ^~~~~~~~~~~~~~~~~~
salpstat.c:363:36: warning: ‘spp_1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  363 |                           res_1 =  SeqPortGetResidue(spp_1);
      |                                    ^~~~~~~~~~~~~~~~~~~~~~~~
salpstat.c: In function ‘SeqAlignWindowScoreFN’:
salpstat.c:2038:45: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2038 |                           residue_score[pos]=score;
      |                           ~~~~~~~~~~~~~~~~~~^~~~~~
salpstat.c:2020:34: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2020 |                       qgaps_score[last_pos]=-(g_open+len*g_ext);
      |                                  ^
salpstat.c: In function ‘SeqAlignWindowScore’:
salpstat.c:2214:12: warning: ‘scoreptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2214 |     return scoreptr;
      |            ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpacc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salpacc.h:33,
                 from salpacc.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpacc.c: In function ‘SeqAlignStrand’:
salpacc.c:334:20: warning: unused variable ‘this_strand’ [-Wunused-variable]
  334 |           Uint1Ptr this_strand=Seq_strand_unknown;
      |                    ^~~~~~~~~~~
salpacc.c: In function ‘SeqAlignStop’:
salpacc.c:561:13: warning: ‘this_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  561 |           if(this_stop!=-1)
      |             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salprop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salprop.h:46,
                 from salprop.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salprop.c: In function ‘CopySeqLocFromSeqAlign’:
salprop.c:398:13: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  398 |             else
      |             ^~~~
salprop.c:401:16: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  401 |                if(crp != NULL)   /*for coding region features*/
      |                ^~
salprop.c:291:12: warning: variable ‘check_gap’ set but not used [-Wunused-but-set-variable]
  291 |    Boolean check_gap;
      |            ^~~~~~~~~
salprop.c: In function ‘FeatListToProp’:
salprop.c:1336:20: warning: variable ‘feat_itemID’ set but not used [-Wunused-but-set-variable]
 1336 |   Uint4            feat_itemID;
      |                    ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salprop.c:46:
salprop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from salprop.c:42:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
salprop.c: In function ‘ApplyNewSeqFeat’:
salprop.c:620:11: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  620 |         j = stop - SeqLocStop(sfp_location);
      |         ~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:514:17: note: ‘stop’ was declared here
  514 |                 stop,
      |                 ^~~~
salprop.c:674:17: warning: ‘sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  674 |   SeqFeatPtr    sfp;
      |                 ^~~
salprop.c:733:24: warning: ‘*((void *)&ppp+1)’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  733 |            if (!sfp_p5 && ppp.p5)
      |                ~~~~~~~~^~~~~~~~~
salprop.c:679:17: note: ‘*((void *)&ppp+1)’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:737:12: warning: ‘ppp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  737 |            SetSeqLocPartial (sfp->location, afp->noLeft, afp->noRight);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salprop.c:679:17: note: ‘ppp’ was declared here
  679 |   ParTials      ppp;
      |                 ^~~
salprop.c:861:40: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  861 |                              if ((val2=is_id_unique (entityID, SeqLocId(sfp->product))))
      |                                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsap.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salsap.h:57,
                 from salsap.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsap.c: In function ‘DenseDiagToDenseSegFunc’:
salsap.c:2912:30: warning: variable ‘slpstop2’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                              ^~~~~~~~
salsap.c:2912:16: warning: variable ‘slpstop1’ set but not used [-Wunused-but-set-variable]
 2912 |                slpstop1 = 0, slpstop2 = 0;
      |                ^~~~~~~~
salsap.c:2911:31: warning: variable ‘slpstart2’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                               ^~~~~~~~~
salsap.c:2911:16: warning: variable ‘slpstart1’ set but not used [-Wunused-but-set-variable]
 2911 |   Int4         slpstart1 = 0, slpstart2 = 0,
      |                ^~~~~~~~~
salsap.c:2909:28: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                            ^~~~~~
salsap.c:2909:16: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2909 |   Int4         start1 = 0, start2 = 0,
      |                ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from salsap.c:47:
salsap.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salsap.c:3631:13: warning: ‘FindSeqAlignCallback’ defined but not used [-Wunused-function]
 3631 | static void FindSeqAlignCallback (SeqEntryPtr sep, Pointer mydata,
      |             ^~~~~~~~~~~~~~~~~~~~
salsap.c:2157:16: warning: ‘AreDenseSegSegmentsValid’ defined but not used [-Wunused-function]
 2157 | static Boolean AreDenseSegSegmentsValid (DenseSegPtr dsp, Int4 start, Int4 num)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
salsap.c: In function ‘SeqAlignEndExtend’:
salsap.c:986:18: warning: ‘n_strands’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  986 |    Uint1Ptr      n_strands;
      |                  ^~~~~~~~~
salsap.c: In function ‘CleanStrandsSeqAlign’:
salsap.c:1662:29: warning: ‘dim’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1662 |         for (j=0; j < numseg*dim && strandp!=NULL; j++, strandp++)
      |                       ~~~~~~^~~~
salsap.c:1669:39: warning: ‘numseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1669 |         for (j=0, k=numseg-1; j<numseg/2; j++, k--) {
      |                                 ~~~~~~^~
salsap.c:1611:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |   Int4Ptr     startp;
      |               ^~~~~~
salsap.c:1610:15: warning: ‘lenp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1610 |   Int4Ptr     lenp;
      |               ^~~~
salsap.c: In function ‘LocalAlignToSeqAnnotDimn’:
salsap.c:1795:9: warning: ‘the_lens’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1795 |   while ( j < lens )
      |         ^
salsap.c: In function ‘multseqalign_from_pairseqalign’:
salsap.c:4394:19: warning: ‘strandp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4394 |            strandp++;
      |            ~~~~~~~^~
salsap.c:4245:6: warning: ‘ok’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4245 |   if (!ok)
      |      ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salstruc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salstruc.h:56,
                 from salstruc.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salstruc.c: In function ‘prot_to_rputprot’:
salstruc.c:734:18: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  734 |      if (strptmp == '\0') break;
      |                  ^~
salstruc.c:734:10: note: did you mean to dereference the pointer?
  734 |      if (strptmp == '\0') break;
      |          ^
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:1338:22: warning: variable ‘maxscroll’ set but not used [-Wunused-but-set-variable]
 1338 |   Int4               maxscroll;
      |                      ^~~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2203:29: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 2203 |   Uint2           entityID, itemtype;
      |                             ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salstruc.c:40:
salstruc.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salstruc.c:41:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salstruc.c: In function ‘data_collect_arrange’:
salstruc.c:920:22: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |             bspssp = new_seledstruct (entityID, itemID, OBJ_(tdp->feattype), 0,itemID,
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  921 |                              from + adp->bufferstart, to + adp->bufferstart,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  922 |                              bspsip, Seq_strand_plus, TRUE, NULL, (Pointer) tdp, 0, 1);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salstruc.c:872:19: note: ‘entityID’ was declared here
  872 |   Uint2           entityID;
      |                   ^~~~~~~~
salstruc.c:1093:44: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1093 |                          seq_info->entityID=entityID;
      |                          ~~~~~~~~~~~~~~~~~~^~~~~~~~~
salstruc.c:1005:17: note: ‘entityID’ was declared here
 1005 |   Uint2         entityID;
      |                 ^~~~~~~~
salstruc.c: In function ‘ShowAlignmentText’:
salstruc.c:2194:19: warning: ‘bspsip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2194 |   SeqIdPtr        bspsip;
      |                   ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from salutil.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salutil.c: In function ‘ReadBufferFromSap’:
salutil.c:128:24: warning: variable ‘buffstart’ set but not used [-Wunused-but-set-variable]
  128 |   Int4        bufflen, buffstart;
      |                        ^~~~~~~~~
salutil.c:127:15: warning: variable ‘sumstart’ set but not used [-Wunused-but-set-variable]
  127 |   Int4        sumstart;
      |               ^~~~~~~~
salutil.c: In function ‘IS_protSeqLoc’:
salutil.c:594:11: warning: variable ‘seq’ set but not used [-Wunused-but-set-variable]
  594 |   CharPtr seq;
      |           ^~~
salutil.c: In function ‘ReplaceSeqIdWithSeqId’:
salutil.c:1236:20: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 1236 |   SeqEntryPtr      oldscope;
      |                    ^~~~~~~~
salutil.c: In function ‘del_ssp_fromid’:
salutil.c:1722:24: warning: variable ‘pressp’ set but not used [-Wunused-but-set-variable]
 1722 |   SelEdStructPtr ssp,  pressp = NULL;
      |                        ^~~~~~
salutil.c: In function ‘checkCDSselect_forprotein’:
salutil.c:2510:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2510 |         if (feat != NULL)
      |            ^
salutil.c: In function ‘NoMoreSegGapForOneAlignment’:
salutil.c:3647:8: warning: implicit declaration of function ‘AlnMgr2IndexSingleChildSeqAlign’ [-Wimplicit-function-declaration]
 3647 |        AlnMgr2IndexSingleChildSeqAlign(salp); /* make sure it's dense-seg */
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from salutil.c:53:
salutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salutil.c: In function ‘sesp_to_slp’:
salutil.c:1927:18: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1927 |   Int2           j,k;
      |                  ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udvseq.h:100,
                 from udvseq.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvseq.c: In function ‘UDV_EncodeIdxFeat’:
udvseq.c:448:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  448 |  return *((Int4Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_BigEncodeIdxFeat’:
udvseq.c:473:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  473 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
udvseq.c: In function ‘UDV_ParaGFTableFeatures’:
udvseq.c:947:22: warning: ‘nFeatLines’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  947 |       pgp->nFeatLines=nFeatLines/*-decal*/;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~~
udvseq.c:753:19: warning: ‘PosFeat’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  753 | Int4 BeginLines=0,PosFeat,StartLetter,StopLetter;
      |                   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blocks.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/blocks.h:88,
                 from blocks.c:93:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blocks.c: In function ‘IndexBlocks’:
blocks.c:928:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
  928 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘IndexNewBlocks’:
blocks.c:1084:19: warning: operation on ‘segp_align->to’ may be undefined [-Wsequence-point]
 1084 |    segp_align->to = segp_align->to = -1;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
blocks.c: In function ‘GetBlockOrientation’:
blocks.c:2383:11: warning: ‘orient’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2383 |    return orient;
      |           ^~~~~~
blocks.c: In function ‘SAMergeBlocks’:
blocks.c:2165:21: warning: ‘tmp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2165 |                tmp2 = tmp2->next;
      |                ~~~~~^~~~~~~~~~~~
blocks.c:1572:28: warning: ‘tmp_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1572 |          merged->segp_head = tmp_head;
      |          ~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c:1470:27: warning: ‘tmp_curr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1470 |                tmp1->prev = tmp_curr;
      |                ~~~~~~~~~~~^~~~~~~~~~
blocks.c:1709:27: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1709 |                tmp1->prev = prev;
      |                ~~~~~~~~~~~^~~~~~
blocks.c:1670:34: warning: ‘new_sabp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |             new_sabp1->segp_head = tmp_head;
      |             ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~
blocks.c: In function ‘SASplitBlock’:
blocks.c:2796:25: warning: ‘segp2_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2796 |             segp2->prev = segp2_prev;
      |             ~~~~~~~~~~~~^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pgppop.c
pgppop.c:58:2: warning: missing braces around initializer [-Wmissing-braces]
   58 |  {
      |  ^
   59 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
   60 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
   61 |    255,  00, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
   62 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
   63 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
   64 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
   65 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
   66 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
   67 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
   68 |      0, 255,   0, /* green       8                 0x00ff00 - */
      |      {          }
   69 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
   70 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
   71 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
   72 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
   73 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
   74 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
   75 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
   76 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
   77 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
   78 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
   79 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
   80 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
   81 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
   82 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
   83 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
   84 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
   85 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
   86 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
   87 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
   88 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
   89 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
   90 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
   91 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
   92 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
   93 |  };
      |  }
pgppop.c: In function ‘DDV_WWW_get_CDS_minus’:
pgppop.c:329:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  329 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c:327:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
  327 |     numivals2=0;
      |     ^~~~~~~~~
pgppop.c: In function ‘DDV_WWW_get_CDS_plus’:
pgppop.c:451:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
  451 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_DisplayTopScale’:
pgppop.c:1300:7: warning: unused variable ‘szBlank’ [-Wunused-variable]
 1300 | Char  szBlank[TABLE_LEFT_MARGIN+5]={""};
      |       ^~~~~~~
pgppop.c: In function ‘DDV_GetBLASTCompLine_1’:
pgppop.c:1736:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                               ^
pgppop.c:1736:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1736 |                     if (matrix[s][q]>0){
      |                                  ^
pgppop.c: In function ‘DDV_DisplayDefaultAlign’:
pgppop.c:3169:13: warning: unused variable ‘sabp’ [-Wunused-variable]
 3169 | SABlockPtr  sabp=NULL;/*indexed SeqAlign*/
      |             ^~~~
pgppop.c: In function ‘DDV_ShowSeqAlign’:
pgppop.c:3512:10: warning: unused variable ‘szPopSetAuth’ [-Wunused-variable]
 3512 |     Char szPopSetAuth[INFO_SIZE+1]={""};
      |          ^~~~~~~~~~~~
pgppop.c:3510:10: warning: unused variable ‘szPopSetName’ [-Wunused-variable]
 3510 |     Char szPopSetName[INFO_SIZE+1]={""};/*article title of the Pop-Set*/
      |          ^~~~~~~~~~~~
pgppop.c: In function ‘DDV_PrintPopSetSummary’:
pgppop.c:3683:9: warning: variable ‘bPairwise’ set but not used [-Wunused-but-set-variable]
 3683 | Boolean bPairwise=TRUE,bPrintTax,bPrintCom;
      |         ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from pgppop.c:49:
pgppop.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from pgppop.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
pgppop.c:2664:13: warning: ‘DDV_PrintFastaGappedSequence’ defined but not used [-Wunused-function]
 2664 | static void DDV_PrintFastaGappedSequence(CharPtr szSequence,FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:2617:13: warning: ‘DDV_GetGappedSequence’ defined but not used [-Wunused-function]
 2617 | static void DDV_GetGappedSequence(SegmentPtr segp,CharPtr szSequence,
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:1841:13: warning: ‘DDV_HideMaskedLetters’ defined but not used [-Wunused-function]
 1841 | static void DDV_HideMaskedLetters(CharPtr szSeqMaster,ParaGPtr pgp,ValNodePtr mask)
      |             ^~~~~~~~~~~~~~~~~~~~~
pgppop.c:314:13: warning: ‘DDV_WWW_get_CDS_minus’ defined but not used [-Wunused-function]
  314 | static void DDV_WWW_get_CDS_minus(SeqMgrFeatContextPtr context,Int4 start,
      |             ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from pgppop.c:51:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
pgppop.c: In function ‘DDV_GetPubValues’:
pgppop.c:2873:20: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2873 |   sprintf(szBuf,"%d",year);
      |                    ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from pgppop.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 7 bytes into a destination of size 6
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c: In function ‘DDV_PopDisplay2’:
pgppop.c:998:22: warning: ‘pgp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  998 |      pgp2->StopLetter=pgp2->StartLetter+AbsLengthAli-1;
      |      ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pgppop.c:1004:14: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1004 |     vnp->next=NULL;
      |              ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF samutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/samutil.h:230,
                 from samutil.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
samutil.c: In function ‘SAM_AlignIdComp’:
samutil.c:796:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  796 |     if ((a == NULL) || (b == NULL))
      |     ^~
samutil.c:799:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  799 |  choice = a->choice;
      |  ^~~~~~
samutil.c: In function ‘SAM_AlignIdDup’:
samutil.c:852:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  852 |     if (oldid == NULL)
      |     ^~
samutil.c:855:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  855 |  newid = ValNodeNew(NULL);
      |  ^~~~~
samutil.c: In function ‘DDE_FreeStack’:
samutil.c:1556:11: warning: operation on ‘Index’ may be undefined [-Wsequence-point]
 1556 |     Index = ++Index % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Add’:
samutil.c:1611:22: warning: operation on ‘pStack->StackMin’ may be undefined [-Wsequence-point]
 1611 |     pStack->StackMin = ++pStack->StackMin % DDE_STACK_SIZE;
samutil.c:1622:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1622 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Prev’:
samutil.c:1686:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1686 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_Next’:
samutil.c:1717:22: warning: operation on ‘pStack->StackIndex’ may be undefined [-Wsequence-point]
 1717 |   pStack->StackIndex = ++pStack->StackIndex % DDE_STACK_SIZE;
samutil.c: In function ‘DDE_ShowRow’:
samutil.c:1984:26: warning: variable ‘NumRows’ set but not used [-Wunused-but-set-variable]
 1984 |   Int4                i, NumRows, HiRow, LowRow, tmp1, tmp2;
      |                          ^~~~~~~
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3106:41: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3106 |   ValNodePtr        ptxtList, last_vnp, vnp;
      |                                         ^~~
samutil.c: In function ‘DDE_RightAddNode’:
samutil.c:3707:33: warning: variable ‘new_vnp’ set but not used [-Wunused-but-set-variable]
 3707 |   ValNodePtr     vnp, next_vnp, new_vnp;
      |                                 ^~~~~~~
samutil.c: In function ‘DDE_LeftMergeAndAddNodeList’:
samutil.c:3757:24: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3757 |   Boolean     RetVal1, RetVal2, IsLeftAlignedGap, NodeDeleted;
      |                        ^~~~~~~
samutil.c: In function ‘DDE_RightMergeAndAddNodeList’:
samutil.c:3813:38: warning: variable ‘RetVal2’ set but not used [-Wunused-but-set-variable]
 3813 |   Boolean     RetVal=FALSE, RetVal1, RetVal2, HeadChanged;
      |                                      ^~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4592:41: warning: variable ‘Index’ set but not used [-Wunused-but-set-variable]
 4592 |   Int4           NumBlocks, i, NumRows, Index, BlockCount=0;
      |                                         ^~~~~
samutil.c: In function ‘DDE_CreateArraysForDenseSeg’:
samutil.c:5028:22: warning: variable ‘NumSegs’ set but not used [-Wunused-but-set-variable]
 5028 |   Int4      NumRows, NumSegs, i, StartIndex, StopIndex, ArrayIndex=0;
      |                      ^~~~~~~
samutil.c: In function ‘DDE_GetLastVNP’:
samutil.c:3143:9: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3143 |   return(last_vnp);
      |         ^
samutil.c: In function ‘DDE_GetNumResidues’:
samutil.c:3166:13: warning: ‘to’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3166 |   return((to-from) + 1);
      |          ~~~^~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objall.h:64,
                 from ../include/samutil.h:231,
                 from samutil.c:42:
samutil.c: In function ‘DDE_RemoveGapFromEndOfAllRows’:
../include/ncbimem.h:232:23: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
samutil.c:3034:15: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3034 |     last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_AddAGap’:
samutil.c:2676:11: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2676 |   else if ((ptxtList == tail) && (!Before)) {
      |           ^
samutil.c: In function ‘DDE_AddGapToEndOfAllRows’:
samutil.c:3118:11: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3118 |     vnp = DDE_AddAGap(pEditInfo, i, last_vnp, FALSE, TRUE);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftLeftList’:
samutil.c:3923:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3923 |   msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRowLeft1’:
samutil.c:2325:13: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2325 |   last_msap = (MsaTxtDispPtr) last_vnp->data.ptrvalue;
      |   ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_RemoveGap’:
samutil.c:2854:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2854 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRowRight1’:
samutil.c:2356:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2356 |   msap = (MsaTxtDispPtr) DDE_GetLastVNP(ptxtList)->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_LastColumnIsAligned’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryLeft1’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
samutil.c: In function ‘DDE_ShiftRightBoundaryRight1’:
samutil.c:4210:8: warning: ‘last_vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4210 |   msap = (MsaTxtDispPtr) vnp->data.ptrvalue;
      |   ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
samutil.c:3137:15: note: ‘last_vnp’ was declared here
 3137 |   ValNodePtr  last_vnp;
      |               ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcolor.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvcolor.c:160:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcolor.c: In function ‘DDV_GetColor’:
ddvcolor.c:1422:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1422 |     Int4 retval = 0;
      |          ^~~~~~
In file included from ../include/samutil.h:234,
                 from ddvcolor.c:165:
ddvcolor.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewmgr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/viewmgr.h:111,
                 from viewmgr.c:165:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from viewmgr.c:167:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from viewmgr.c:168:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
viewmgr.c:683:13: warning: ‘ViewMgr_Swap’ defined but not used [-Wunused-function]
  683 | static void ViewMgr_Swap(SeqAlign *salp1, SeqAlign *salp2)
      |             ^~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvcreate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ddvcreate.h:142,
                 from ddvcreate.c:245:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvcreate.c:290:2: warning: missing braces around initializer [-Wmissing-braces]
  290 |  {
      |  ^
  291 |      /* Red  Grn Blue     Color     ColorID             Old Hex  New Hex */
  292 |    255, 255, 255, /* default     0                 0xffffff - */
      |    {            }
  293 |    255,   0, 153, /* hotpink     1                 0xff1493 0xff0099 */
      |    {            }
  294 |    255,   0, 255, /* magenta     2                 0xff00ff - */
      |    {            }
  295 |    153,  51, 255, /* purple      3                 0x9b30ff 0x9933ff */
      |    {            }
  296 |      0,   0, 255, /* blue        4                 0x0000ff - */
      |      {          }
  297 |     00, 153, 255, /* sky         5                 0x1e90ff 0x0099ff */
      |     {           }
  298 |      0, 255, 255, /* cyan        6                 0x00ffff - */
      |      {          }
  299 |      0, 255, 153, /* sea         7                 0x00ff8f 0x00ff99 */
      |      {          }
  300 |      0, 192,   0, /* green       8                 0x00ff00 - */
      |      {          }
  301 |    255, 255,   0, /* yellow      9                 0xffff00 - */
      |    {            }
  302 |    255, 204,   0, /* gold       10                 0xffa500 0xffcc00 */
      |    {            }
  303 |    255, 102,   0, /* orange     11                 0xff4500 0xff6600 */
      |    {            }
  304 |    255,   0,   0, /* red        12                 0xff0000 - */
      |    {            }
  305 |    255, 153, 153, /* pink       13                 0xff7256 0xff9999 */
      |    {            }
  306 |    255, 204, 204, /* pinktint   14                 0xffaeb9 0xffcccc */
      |    {            }
  307 |    255, 255, 255, /* white      15                0xffffff  -*/
      |    {            }
  308 |      0,   0,   0, /* black      16                0x000000 - */
      |      {          }
  309 |    204, 204, 255, /* bluetint   17                0xb0e2ff - 0xccccff*/
      |    {            }
  310 |    153, 255, 153, /* greentint  18                0x9aff9a - 0x99ff99 */
      |    {            }
  311 |    255, 255, 153, /* yellowtint 19                0xffec8b - 0xffff99 */
      |    {            }
  312 |    102, 102, 102, /* gray       20                0x7d7d7d   0x666666 */
      |    {            }
  313 |    153, 102,  51, /* brown      21                0x8b5742   01x996633 */
      |    {            }
  314 |    255,   0,   0, /* perm colors 22: red          0xff0000 - */
      |    {            }
  315 |      0, 255,   0, /* perm colors 23: green        0x00ff00 - */
      |      {          }
  316 |    255,   0, 255, /* perm colors 24: magenta      0xff00ff - */
      |    {            }
  317 |     00, 153, 255, /* perm colors 25: sky          0x1e90ff 0x0099ff */
      |     {           }
  318 |    153,  51, 255, /* perm colors 26: purple        0x9b30ff 0x9933ff */
      |    {            }
  319 |      0, 255,   0, /* SS colors 27: helix, green   0x00ff00 - */
      |      {          }
  320 |    255, 204,   0, /* SS colors 28: strand, gold   0xffa500 0xffcc00 */
      |    {            }
  321 |    255, 102,   0, /* SS colors 29: turn, orange   0xff4500 0xff6600 */
      |    {            }
  322 |      0, 255, 255, /* SS colors 30: coil, cyan     ox00ffff - */
      |      {          }
  323 |    255, 255,   0, /* highlight colors 31: yellow  0xffff00 - */
      |    {            }
  324 |      0,   0,   0 /* background colors 32: black  0x000000 - */
      |      {
  325 |  };
      |  }
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_1’:
ddvcreate.c:493:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  493 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_2’:
ddvcreate.c:529:21: warning: variable ‘more’ set but not used [-Wunused-but-set-variable]
  529 |    Boolean          more;
      |                     ^~~~
ddvcreate.c: In function ‘DDV_CreateDisplayFromIndex_EX2’:
ddvcreate.c:779:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  779 |          while (more = AlnMgrGetNextAlnBit(mpplp->sap, amp))
      |                 ^~~~
ddvcreate.c:690:21: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
  690 |    Boolean          last;
      |                     ^~~~
ddvcreate.c:686:21: warning: variable ‘PopulateTo’ set but not used [-Wunused-but-set-variable]
  686 |    Int4             PopulateTo;
      |                     ^~~~~~~~~~
ddvcreate.c: In function ‘DDV_DisplayNewBLAST’:
ddvcreate.c:1942:16: warning: variable ‘what’ set but not used [-Wunused-but-set-variable]
 1942 | Uint1          what;
      |                ^~~~
ddvcreate.c: In function ‘UDV_BigEncodeIdxFeat4’:
ddvcreate.c:2878:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
 2878 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/ddvcreate.h:143,
                 from ddvcreate.c:245:
ddvcreate.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ddvcreate.c:249:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:2362:16: warning: ‘DDV_DisplayBlastSAP’ defined but not used [-Wunused-function]
 2362 | static Boolean DDV_DisplayBlastSAP(SeqAlignPtr sap, ValNodePtr mask,
      |                ^~~~~~~~~~~~~~~~~~~
ddvcreate.c:525:16: warning: ‘DDV_CreateDisplayFromIndex_2’ defined but not used [-Wunused-function]
  525 | static Boolean DDV_CreateDisplayFromIndex_2(SeqAlignPtr sap, MsaParaGPopListPtr mpplp, Int2 LineSize)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘UAMgrIntUAMsg’:
ddvcreate.c:1141:11: warning: ‘stop_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1141 |  ubd->from=Start;
      |  ~~~~~~~~~^~~~~~
ddvcreate.c:1158:73: note: ‘stop_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                                         ^~~~~~~~~~~
ddvcreate.c:1195:4: warning: ‘start_middle’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1195 |    UABitDescrInit(&uamp->ubd[0],0,start_middle-1,TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:60: note: ‘start_middle’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                                                            ^~~~~~~~~~~~
ddvcreate.c:1201:60: warning: ‘halfBspLengthSeqR’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1201 |    UABitDescrInit(&uamp->ubd[1],halfBspLengthSeqL,MaxLength-halfBspLengthSeqR-1,TRUE);
      |                                                   ~~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:24: note: ‘halfBspLengthSeqR’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |                        ^~~~~~~~~~~~~~~~~
ddvcreate.c:1200:50: warning: ‘halfBspLengthSeqL’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1200 |    UABitDescrInit(&uamp->ubd[0],BspStart,BspStart+halfBspLengthSeqL-1,FALSE);
      |                                          ~~~~~~~~^~~~~~~~~~~~~~~~~~
ddvcreate.c:1158:6: note: ‘halfBspLengthSeqL’ was declared here
 1158 | Int4 halfBspLengthSeqL,halfBspLengthSeqR,halfBspLengthDesc,start_middle,stop_middle;
      |      ^~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_PopulateDisplayForDisc’:
ddvcreate.c:1048:16: warning: ‘vnp_para’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   vnp_list[n-1]=vnp_para;
      |   ~~~~~~~~~~~~~^~~~~~~~~
ddvcreate.c: In function ‘UABuildDescriptor2’:
ddvcreate.c:1541:13: warning: ‘stopcopy’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1541 |   *TotLength+=(stopcopy-startcopy);/*to be used for the display coord. system*/
      |             ^~
ddvcreate.c: In function ‘DDV_DumpSAPInAFile’:
ddvcreate.c:1798:2: warning: ‘matrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1798 |  DDV_AffichageParaG(mpplp,0,0,mpplp->LengthAli-1,mpplp->LengthAli,0,option,
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1799 |   LineSize,hFile,byteSpp,matrix,gclr,NULL);
      |   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvcreate.c: In function ‘DDV_ReadSeqBin’:
ddvcreate.c:2593:9: warning: ‘btr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2593 |  return btr;
      |         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jsavlt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/jsavlt.h:4,
                 from jsavlt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF needleman.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/needleman.h:40,
                 from needleman.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
needleman.c: In function ‘NeedlemanWunschQuadraticByLoc’:
needleman.c:281:24: warning: variable ‘bestDbPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |                        ^~~~~~~~~
needleman.c:281:10: warning: variable ‘bestQueryPos’ set but not used [-Wunused-but-set-variable]
  281 |     Int4 bestQueryPos, bestDbPos; /*position ending best score in
      |          ^~~~~~~~~~~~
needleman.c: In function ‘FetchSequenceByLoc’:
needleman.c:243:12: warning: ‘query’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  243 |     return query;
      |            ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF txalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
txalign.c: In function ‘addLinkoutForDefline’:
txalign.c:188:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  188 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘addLinkoutForBioseq’:
txalign.c:256:13: warning: variable ‘hasLinkout’ set but not used [-Wunused-but-set-variable]
  256 |     Boolean hasLinkout=FALSE;
      |             ^~~~~~~~~~
txalign.c: In function ‘DrawTextToBuffer’:
txalign.c:1254:88: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 1254 |        snprintf(checkboxBuf, 200, "<input type=\"checkbox\" name=\"getSeqGi\" value=\"%d\" onClick=\"synchronizeCheck(this.value, 'getSeqAlignment%d', 'getSeqGi', this.checked)\">", sip->data.intvalue, query_number_glb);
      |                                                                                       ~^                                                                                              ~~~~~~~~~~~~~~~~~~
      |                                                                                        |                                                                                                       |
      |                                                                                        int                                                                                                     Nlm_Int8 {aka long int}
      |                                                                                       %ld
txalign.c: In function ‘load_align_sum_for_StdSeg’:
txalign.c:2230:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2230 |             if (bsp = BioseqLockById(SeqLocId(ssp->loc->next))) {
      |                 ^~~
txalign.c: In function ‘ShowAlignNodeText2Ex’:
txalign.c:3030:13: warning: variable ‘is_end’ set but not used [-Wunused-but-set-variable]
 3030 |     Boolean is_end, strip_semicolon=TRUE;
      |             ^~~~~~
txalign.c: In function ‘Tx_PrintDefLine’:
txalign.c:4079:7: warning: unused variable ‘seqid_length’ [-Wunused-variable]
 4079 |  Int4 seqid_length = 0, total_length = 0;
      |       ^~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath’:
txalign.c:4494:39: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4494 |             } else if (bestid != NULL && !(options & TXALIGN_NO_DUMPGNL) || (options & TXALIGN_NO_ENTREZ))
      |                        ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4498:33: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 4498 |                             if (bsp = BioseqLockById(bestid)) {
      |                                 ^~~
txalign.c:4200:10: warning: unused variable ‘ColumnDistance’ [-Wunused-variable]
 4200 |     Int2 ColumnDistance=2, extraSpace=0, extraSpace2=0, strLen=0, maxEvalWidth=5, maxNWidth=2;
      |          ^~~~~~~~~~~~~~
txalign.c:4192:43: warning: unused variable ‘sip_list’ [-Wunused-variable]
 4192 |     SeqIdPtr bestid, gi_list, subject_id, sip_list=NULL, last_id;
      |                                           ^~~~~~~~
txalign.c:4188:17: warning: variable ‘ptr_start’ set but not used [-Wunused-but-set-variable]
 4188 |     Char *ptr, *ptr_start, *eval_buff_ptr, *bit_score_buff_ptr;
      |                 ^~~~~~~~~
txalign.c: In function ‘FormatScoreFromSeqAlignEx’:
txalign.c:4817:25: warning: unused variable ‘t_adj’ [-Wunused-variable]
 4817 |         Int4 m_adj = 0, t_adj = 0;
      |                         ^~~~~
txalign.c:4816:29: warning: unused variable ‘last_t_to’ [-Wunused-variable]
 4816 |         Int4 last_m_to = 0, last_t_to = 0;
      |                             ^~~~~~~~~
txalign.c: In function ‘FSFPrintOneDefline’:
txalign.c:4925:14: warning: variable ‘seqid_len’ set but not used [-Wunused-but-set-variable]
 4925 |     Int4 gi, seqid_len = 0;
      |              ^~~~~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5142:13: warning: variable ‘allocated’ set but not used [-Wunused-but-set-variable]
 5142 |     Boolean allocated, first;
      |             ^~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment’:
txalign.c:5808:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                            ~~~~~^~~~~~~~~~~~
txalign.c:5808:52: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 5808 |             else if(matrix[line1[line_index]][line2[line_index]] > 0)
      |                                               ~~~~~^~~~~~~~~~~~
txalign.c:5575:13: warning: variable ‘lines’ set but not used [-Wunused-but-set-variable]
 5575 |     Int4 i, lines, k, shift_info = 0;
      |             ^~~~~
txalign.c: In function ‘OOFDisplayTraceBack1’:
txalign.c:6063:33: warning: unused variable ‘st’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: unused variable ‘tmp’ [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c: In function ‘OOFDisplayTraceBack2’:
txalign.c:6137:33: warning: unused variable ‘st’ [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c: In function ‘FDGetTaxNamesFromBioseq’:
txalign.c:6239:21: warning: variable ‘bdsp’ set but not used [-Wunused-but-set-variable]
 6239 |     BlastDefLinePtr bdsp;
      |                     ^~~~
txalign.c: At top level:
txalign.c:310:19: warning: ‘ProcessTextInsertion’ declared ‘static’ but never defined [-Wunused-function]
  310 | static ValNodePtr ProcessTextInsertion PROTO((AlignNodePtr anp, Int4 m_left, Int4 m_right, BioseqPtr bsp, Int4 line_len, Int1 frame));
      |                   ^~~~~~~~~~~~~~~~~~~~
txalign.c:6137:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6137 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:6063:9: warning: ‘tmp’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |         ^~~
txalign.c:6063:33: warning: ‘st’ defined but not used [-Wunused-variable]
 6063 |         tmp[10] = "         ", *st;
      |                                 ^~
txalign.c:2915:1: warning: ‘get_seq_id’ defined but not used [-Wunused-function]
 2915 | get_seq_id(SeqAlignPtr sap, Int2 index)
      | ^~~~~~~~~~
txalign.c:1820:16: warning: ‘has_hit_in_region’ defined but not used [-Wunused-function]
 1820 | static Boolean has_hit_in_region(Uint1Ptr all_frame)
      |                ^~~~~~~~~~~~~~~~~
txalign.c:112:16: warning: ‘getNameInitials’ defined but not used [-Wunused-function]
  112 | static CharPtr getNameInitials(CharPtr name){
      |                ^~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
txalign.c: In function ‘DrawTextToBuffer’:
../include/ncbistr.h:331:19: warning: ‘HTML_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
txalign.c:1094:10: note: ‘HTML_buffer’ was declared here
 1094 |  CharPtr HTML_buffer;
      |          ^~~~~~~~~~~
txalign.c: In function ‘OOFShowSingleAlignment.isra.0’:
txalign.c:73:17: warning: ‘pro_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:48: note: ‘pro_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                                ^~~~~~~~~~~~~~
txalign.c:73:17: warning: ‘dna_line_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   73 | #define fprintf tx_fprintf
      |                 ^~~~~~~~~~
txalign.c:5571:32: note: ‘dna_line_start’ was declared here
 5571 |     Int4 dna_index, pro_index, dna_line_start, pro_line_start;
      |                                ^~~~~~~~~~~~~~
txalign.c: In function ‘find_score_in_align’:
txalign.c:2080:35: warning: ‘smtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2080 |                       stdaa_res = SeqMapTableConvert(smtp, t_res);
      |                                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:1980:20: note: ‘smtp’ was declared here
 1980 |     SeqMapTablePtr smtp;
      |                    ^~~~
txalign.c:1945:13: warning: ‘t_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1945 |             SeqPortFree(t_spp);
      |             ^~~~~~~~~~~~~~~~~~
txalign.c:1876:23: note: ‘t_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                       ^~~~~
txalign.c:1961:5: warning: ‘m_spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1961 |     SeqPortFree(m_spp);
      |     ^~~~~~~~~~~~~~~~~~
txalign.c:1876:16: note: ‘m_spp’ was declared here
 1876 |     SeqPortPtr m_spp, t_spp;
      |                ^~~~~
txalign.c: In function ‘ShowAlignNodeText2Ex.isra.0’:
txalign.c:3025:10: warning: ‘m_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3025 |     Int4 m_len;   /*length of the master sequence*/
      |          ^~~~~
txalign.c: In function ‘ShowTextAlignFromAnnot3’:
txalign.c:949:12: warning: ‘retval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  949 |     return retval;
      |            ^~~~~~
txalign.c: In function ‘FormatScoreFunc’:
txalign.c:5359:37: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 5359 |         sprintf(buffer, " <a name = %s_%ld></a>"
      |                                     ^~
......
 5362 |                 id_buffer, (long) score, id_buffer, (long) score,
      |                 ~~~~~~~~~            
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
 5359 |         sprintf(buffer, " <a name = %s_%ld></a>"
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483647, 2147483647]
txalign.c:5359:25: note: directive argument in the range [-2147483648, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 63 and 4238 bytes into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c: In function ‘PrintDefLinesFromSeqAlignWithPath.part.0’:
txalign.c:4647:50: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2038 [-Wformat-overflow=]
 4647 |                     sprintf(buffer1, "<a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                  ^~          ~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 2074 bytes into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
txalign.c:4645:51: warning: ‘%s’ directive writing up to 2048 bytes into a region of size 2037 [-Wformat-overflow=]
 4645 |                     sprintf(buffer1, " <a href = #%s>%s</a>", id_buffer, bit_score_buff_ptr);
      |                                                   ^~          ~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/txalign.h:228,
                 from txalign.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 18 or more bytes (assuming 2066) into a destination of size 2049
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fdlobj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from fdlobj.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fdlobj.c: In function ‘BlastDefLineSetAsnRead’:
fdlobj.c:69:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   69 |    AsnReadFunc func;
      |                ^~~~
fdlobj.c: In function ‘BlastDefLineAsnRead’:
fdlobj.c:202:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  202 |    AsnReadFunc func;
      |                ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alignmgr2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/alignmgr2.h:110,
                 from alignmgr2.c:242:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexSingleDenseSegSA’:
alignmgr2.c:885:13: warning: statement with no effect [-Wunused-value]
  885 |             for (j; j<dsp->numseg && next == -1; j++)
      |             ^~~
alignmgr2.c: In function ‘AlnMgr2CopySeg’:
alignmgr2.c:2984:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2984 |       if (ldelta = ABS(s->beg - beg)) {
      |           ^~~~~~
alignmgr2.c: In function ‘AlnMgr2AddInNewPairwiseSA’:
alignmgr2.c:3221:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3221 |   while (a = AlnMgr2GetNextSeqPiece(a)) {
      |          ^
alignmgr2.c:3223:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3223 |     while (b = AlnMgr2GetNextLimitedSeqPiece(b, a)) {
      |            ^
alignmgr2.c:3233:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3233 |   while (A = AlnMgr2GetNextSeqPiece(A)) {
      |          ^
alignmgr2.c:3237:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3237 |       while (B = AlnMgr2GetNextLimitedSeqPiece(B, A)) {};
      |              ^
alignmgr2.c: In function ‘AlnMgr2SetUnaln’:
alignmgr2.c:5410:22: warning: variable ‘dsp’ set but not used [-Wunused-but-set-variable]
 5410 |    DenseSegPtr       dsp;
      |                      ^~~
alignmgr2.c: In function ‘AlnMgr2PrintSeqAlign’:
alignmgr2.c:5623:17: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 5623 |          while (more = AlnMgr2GetNextAlnBit(sap, amp))
      |                 ^~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:5719:21: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
 5719 |    Boolean          found;
      |                     ^~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6085:22: warning: variable ‘saip’ set but not used [-Wunused-but-set-variable]
 6085 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6331:7: warning: statement with no effect [-Wunused-value]
 6331 |       for (i; i<interrupt->segnum; i++)
      |       ^~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6774:20: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |                    ^~
alignmgr2.c:6774:8: note: did you mean to dereference the pointer?
 6774 |    if (saip->unaln == FALSE || fill_in == FALSE)
      |        ^
alignmgr2.c: In function ‘AlnMgr2ComputeScoreForSeqAlign’:
alignmgr2.c:8341:17: warning: variable ‘numseqs’ set but not used [-Wunused-but-set-variable]
 8341 |    Int4         numseqs;
      |                 ^~~~~~~
alignmgr2.c:8339:17: warning: variable ‘mismatch’ set but not used [-Wunused-but-set-variable]
 8339 |    Int4         mismatch;
      |                 ^~~~~~~~
alignmgr2.c:8338:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8338 |    Int4         len;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from alignmgr2.c:242:
alignmgr2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
alignmgr2.c:3557:13: warning: ‘AlnMgr2AddInNewSA’ defined but not used [-Wunused-function]
 3557 | static void AlnMgr2AddInNewSA(SeqAlignPtr parent, SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~
alignmgr2.c:2368:18: warning: ‘AlnMgr2GetEdgeList’ defined but not used [-Wunused-function]
 2368 | static AMEdgePtr AlnMgr2GetEdgeList(Int4 vertexnum, AMEdgePtr edge_head, AMEdgePtr already_used)
      |                  ^~~~~~~~~~~~~~~~~~
alignmgr2.c:2140:13: warning: ‘AlnMgr2SortVerticesByNumEdges’ defined but not used [-Wunused-function]
 2140 | static void AlnMgr2SortVerticesByNumEdges(AMVertexPtr PNTR vertexarray, Int4 numvertices)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:1061:13: warning: ‘AlnMgr2UnpackSeqAlignChain’ defined but not used [-Wunused-function]
 1061 | static void AlnMgr2UnpackSeqAlignChain(SeqAlignPtr sap)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetLongestSeqLoc’:
alignmgr2.c:10131:15: warning: ‘slp_longest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10131 |    SeqLocPtr  slp_longest;
      |               ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2IndexLite’:
alignmgr2.c:1001:33: warning: ‘sap_segs_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1001 |             sap_segs_prev->next = (SeqAlignPtr)(sap_segs->segs);
      |             ~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:968:17: note: ‘sap_segs_prev’ was declared here
  968 |    SeqAlignPtr  sap_segs_prev;
      |                 ^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetUnalignedInfo’:
alignmgr2.c:6122:54: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6122 |             *from = dsp->starts[dsp->dim*i+row-1]+dsp->lens[i];
      |                                                   ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetMaxUnalignedLength’:
alignmgr2.c:7068:23: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7068 |       for (i=0; i<saip->srdp[row]->numunaln && !found; i++)
      |                   ~~~~^~~~~~
alignmgr2.c:7077:19: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7077 |    for (i=0; i<dsp->dim; i++)
      |                ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetInterruptInfo’:
alignmgr2.c:6353:16: warning: ‘iip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6353 |    iip->strand = strand;
      |    ~~~~~~~~~~~~^~~~~~~~
alignmgr2.c:6182:19: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6182 |       trans = saip->srdp[saip->anchor-1]->sect;
      |               ~~~~^~~~~~
alignmgr2.c:6337:48: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6337 |                iip->starts[k] = dsp->starts[dsp->dim*i + interrupt->row-1];
      |                                             ~~~^~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthSeqRangeInSA’:
alignmgr2.c:6478:15: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6478 |    srdp = saip->srdp[n-1];
      |           ~~~~^~~~~~
alignmgr2.c:6449:21: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6449 |    DenseSegPtr      dsp;
      |                     ^~~
alignmgr2.c: In function ‘AlnMgr2GetNthRowSpanInSA’:
alignmgr2.c:6550:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6550 |       *start = saip->aligncoords[i];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c:6558:41: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6558 |       *stop = saip->aligncoords[i] + dsp->lens[srdp->sect[srdp->numsect-1]] - 1;
      |                                      ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetAlnLength’:
alignmgr2.c:6789:17: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6789 |          len += AlnMgr2GetMaxUnalignedLength(salp, i);
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:6780:24: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6780 |          lastseg = saip->srdp[saip->anchor-1]->sect[saip->srdp[saip->anchor-1]->numsect-1];
      |                    ~~~~^~~~~~
alignmgr2.c:6788:20: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6788 |          len += dsp->lens[i];
      |                 ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNextAlnBit’:
alignmgr2.c:6025:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6025 |    if (saip->anchor <= 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:5717:21: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5717 |    DenseSegPtr      dsp;
      |                     ^~~
alignmgr2.c: In function ‘AlnMgr2IsSAPDiscAli’:
alignmgr2.c:6813:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6813 |    if (saip->numunaln > 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumAlnBlocks’:
alignmgr2.c:6836:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6836 |    if (saip->numunaln >= 0)
      |        ~~~~^~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthBlockRange’:
alignmgr2.c:6870:20: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6870 |       *start = saip->aligncoords[saip->unaln[n-1]+1];
      |                ~~~~^~~~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNthUnalignedForNthRow’:
alignmgr2.c:6889:22: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6889 |    SAIndex2Ptr       saip;
      |                      ^~~~
alignmgr2.c:6887:22: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 6887 |    DenseSegPtr       dsp;
      |                      ^~~
alignmgr2.c: In function ‘AlnMgr2GetNextLengthBit’:
alignmgr2.c:7019:26: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7019 |             maxseg = saip->unaln[*seg];
      |                      ~~~~^~~~~~~
alignmgr2.c:7024:26: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7024 |             (*len) += dsp->lens[i];
      |                       ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetNumSegsInRange’:
alignmgr2.c:7185:62: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7185 |    start = binary_search_on_uint4_list(aligncoords, from, dsp->numseg);
      |                                                           ~~~^~~~~~~~
alignmgr2.c:7150:21: warning: ‘aligncoords’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7150 |    Uint4Ptr         aligncoords;
      |                     ^~~~~~~~~~~
alignmgr2.c: In function ‘AlnMgr2MapBioseqToSeqAlign’:
alignmgr2.c:7652:12: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7652 |    if (saip->anchor > 0)
      |        ~~~~^~~~~~~~
alignmgr2.c:7590:21: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7590 |    DenseSegPtr      dsp;
      |                     ^~~
alignmgr2.c: In function ‘AlnMgr2MapSeqAlignToBioseq’:
alignmgr2.c:7715:11: warning: ‘saip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7715 |    sect = binary_search_on_uint4_list(saip->aligncoords, pos, saip->numseg);
      |           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
alignmgr2.c:7730:55: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7730 |       return (dsp->starts[sect*(dsp->dim)+row-1] + dsp->lens[sect] - 1 - offset);
      |                                                    ~~~^~~~~~
alignmgr2.c: In function ‘AlnMgr2GetSubAlign’:
alignmgr2.c:7554:26: warning: ‘sap_real’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 7554 |    if (sap == NULL || sap->saip == NULL)
      |                       ~~~^~~~~~
alignmgr2.c:7999:21: note: ‘sap_real’ was declared here
 7999 |    SeqAlignPtr      sap_real;
      |                     ^~~~~~~~
alignmgr2.c: In function ‘AlnMgr2FillInUnaligned’:
alignmgr2.c:9869:12: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9869 |       curr = curr + 1 + offset;
      |       ~~~~~^~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF alnread.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF acerdapi.c
acerdapi.c: In function ‘DoesSeqStringMatchBsp’:
acerdapi.c:201:30: warning: variable ‘seq_len’ set but not used [-Wunused-but-set-variable]
  201 |   Int4 ctr, pos = 0, i, len, seq_len;
      |                              ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from acerdapi.c:40:
acerdapi.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aceread.c
aceread.c:3308:12: warning: ‘s_GetUngappedPosition’ defined but not used [-Wunused-function]
 3308 | static int s_GetUngappedPosition (int gapped_pos, char *seq)
      |            ^~~~~~~~~~~~~~~~~~~~~
aceread.c:276:13: warning: ‘AdjustGapInfoFor3Trim’ defined but not used [-Wunused-function]
  276 | static void AdjustGapInfoFor3Trim (TGapInfoPtr gap_info, int new_len)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:247:13: warning: ‘AdjustGapInfoFor5Trim’ defined but not used [-Wunused-function]
  247 | static void AdjustGapInfoFor5Trim (TGapInfoPtr gap_info, int trim)
      |             ^~~~~~~~~~~~~~~~~~~~~
aceread.c:134:12: warning: ‘s_IsGapChar’ defined but not used [-Wunused-function]
  134 | static int s_IsGapChar (char ch, char *gap_chars)
      |            ^~~~~~~~~~~
aceread.c: In function ‘s_ReadContig’:
aceread.c:1477:12: warning: ‘linestring’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1477 |         if (linestring != NULL) free (linestring);
      |            ^
rm -f libncbiobj.a
ar cru libncbiobj.a objacces.o objalign.o objall.o objbibli.o objfeat.o objgen.o objloc.o objmedli.o objpub.o objres.o objscoremat.o objseq.o objblock.o objcode.o objsset.o objsub.o objprt.o objfdef.o objalignloc.o objtable.o objpubme.o objmdrs.o objproj.o objgbseq.o objtseq.o objinsdseq.o objmacro.o objent2.o ent2api.o pmfapi.o objtax3.o tax3api.o objegkludge.o objentgene.o objmla2.o mla2api.o qblastapi.o vecscnapi.o objmim.o objvalid.o mimapi.o cddapi.o seqport.o sequtil.o prtutil.o simple.o tofasta.o tofile.o tomedlin.o valid.o valapi.o alignmgr.o aliparse.o aliread.o alignval.o sqnutil1.o sqnutil2.o sqnutil3.o sqnutil4.o subutil.o edutil.o asn2ff1.o asn2ff2.o asn2ff3.o asn2ff4.o asn2ff5.o asn2ff6.o asn2gnb1.o asn2gnb2.o asn2gnb3.o asn2gnb4.o asn2gnb5.o asn2gnb6.o ftusrstr.o gbfeat.o gbftglob.o gbparint.o utilpars.o utilpub.o ffprint.o wprint.o satutil.o seqmgr.o objmgr.o gather.o accmmdbs.o acccn3ds.o lsqfetch.o findrepl.o codon.o jzcoll.o jzmisc.o maputil.o mconsist.o macroapi.o salpedit.o salpstat.o salpacc.o salprop.o salsap.o salstruc.o salutil.o udvseq.o blocks.o pgppop.o samutil.o ddvcolor.o viewmgr.o ddvcreate.o jsavlt.o needleman.o txalign.o fdlobj.o alignmgr2.o alnread.o acerdapi.o aceread.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiobj.a ../lib
ranlib ../lib/libncbiobj.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdentrez.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdentrez.c:283:23: warning: ‘CdEntMlSumGet’ declared ‘static’ but never defined [-Wunused-function]
  283 | static DocSumPtr NEAR CdEntMlSumGet PROTO((Int4 uid));
      |                       ^~~~~~~~~~~~~
cdentrez.c:310:23: warning: ‘CdEntSeqSumGet’ declared ‘static’ but never defined [-Wunused-function]
  310 | static DocSumPtr NEAR CdEntSeqSumGet PROTO((Int4 uid, DocType type));
      |                       ^~~~~~~~~~~~~~
cdentrez.c:2935:23: warning: ‘MedSumAsnRead’ defined but not used [-Wunused-function]
 2935 | static DocSumPtr NEAR MedSumAsnRead (AsnIoPtr aip, DocUid uid)
      |                       ^~~~~~~~~~~~~
cdentrez.c:1616:26: warning: ‘FreePostingList’ defined but not used [-Wunused-function]
 1616 | static ByteStorePtr NEAR FreePostingList (ByteStorePtr lst)
      |                          ^~~~~~~~~~~~~~~
cdentrez.c:307:20: warning: ‘BIOSEQ_id_E’ defined but not used [-Wunused-variable]
  307 | static AsnTypePtr  BIOSEQ_id_E = NULL;
      |                    ^~~~~~~~~~~
cdentrez.c: In function ‘CdEntrezMergeTerm’:
cdentrez.c:2675:17: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2675 |           *totl = total;
      |           ~~~~~~^~~~~~~
cdentrez.c:2672:17: warning: ‘special’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2672 |           *spcl = special;
      |           ~~~~~~^~~~~~~~~
cdentrez.c:2640:5: warning: ‘termpage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2640 |     cd3_CdTermScan (db, fld, termpage, (Int4)0, ScanAndFreeProc);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdLinkUidList’:
cdentrez.c:938:9: warning: ‘count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  938 |  return count;
      |         ^~~~~
cdentrez.c: In function ‘CdTermListByTerm’:
cdentrez.c:1036:12: warning: ‘first’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1036 |    rsult = cd3_CdTermScan(type,field,first,0,TermListTermScanProc);
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
In function ‘strncpy’,
    inlined from ‘FindTermNode’ at cdentrez.c:1813:11,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:617:14,
    inlined from ‘CdEntTLAddTerm’ at cdentrez.c:600:24:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntTLAddTerm’:
cdentrez.c:1895:24: warning: ‘total’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1895 |             if (scanOk && total > 0) {
      |                 ~~~~~~~^~~~~~~~~~~~
cdentrez.c:1787:13: note: ‘total’ was declared here
 1787 |   Int4      total;
      |             ^~~~~
cdentrez.c: In function ‘CdEntrezFindTerm’:
cdentrez.c:1123:3: warning: ‘ctp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1123 |   CdTermFree(ctp);
      |   ^~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdEntMedlineEntryListGet’:
cdentrez.c:2720:6: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2720 |      cd3_CdDocAsnClose(aip);
      |      ^~~~~~~~~~~~~~~~~~~~~~
cdentrez.c: In function ‘CdSeqSumAsnRead’:
cdentrez.c:3424:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3424 |             sprintf (cds, " cds%d", (int) proteins);
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdentrez.c:3503:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3503 |       sprintf (caption, "%s, %s", author, year);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from cdentrez.c:162:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 51 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdromlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdromlib.c:73:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdnewlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdnewlib.c:600:27: warning: missing braces around initializer [-Wmissing-braces]
  600 | struct CdFInfo _finfo[] = {
      |                           ^
  601 |  "", 0, 0,
      |  {       }
  602 |  "hca", MAGIC_hca, FORMAT_hca,
      |  {                           }
  603 |  "sum", MAGIC_sum, FORMAT_sum,
      |  {                           }
  604 |  "lnk", MAGIC_lnk, FORMAT_lnk,
      |  {                           }
  605 |  "ofs", MAGIC_ofs, FORMAT_ofs,
      |  {                           }
  606 |  "oix", MAGIC_oix, FORMAT_oix,
      |  {                           }
  607 |  "trm", MAGIC_trm, FORMAT_trm,
      |  {                           }
  608 |  "tix", MAGIC_tix, FORMAT_tix,
      |  {                           }
  609 |  "pst", MAGIC_pst, FORMAT_pst,
      |  {                           }
  610 |  "inf", MAGIC_inf, FORMAT_inf
      |  {
  611 | };
      | }
cdnewlib.c:614:27: warning: missing braces around initializer [-Wmissing-braces]
  614 | struct CdDirInfo _dir[] = {
      |                           ^
cdnewlib.c: In function ‘cd3_CdDocAsnOpen’:
cdnewlib.c:1342:12: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1342 |     return (AsnIo*) CatastrophicFailure(1);
      |            ^
cdnewlib.c:1327:9: warning: unused variable ‘fdir’ [-Wunused-variable]
 1327 |   char *fdir = NULL;
      |         ^~~~
cdnewlib.c: In function ‘UidIndex_ReadPage’:
cdnewlib.c:1937:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1937 |   return (long*)CatastrophicFailure(1);
      |          ^
cdnewlib.c:1945:10: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 1945 |   return (long*)CatastrophicFailure(1);
      |          ^
cdnewlib.c: In function ‘CdDevice_Init’:
cdnewlib.c:2739:6: warning: variable ‘cd_num’ set but not used [-Wunused-but-set-variable]
 2739 |  int cd_num;
      |      ^~~~~~
At top level:
cdnewlib.c:3605:13: warning: ‘Cache_Purge’ defined but not used [-Wunused-function]
 3605 | static void Cache_Purge (Cache *cache)
      |             ^~~~~~~~~~~
cdnewlib.c:3592:14: warning: ‘Cache_Peek’ defined but not used [-Wunused-function]
 3592 | static void* Cache_Peek (Cache *cache, long id)
      |              ^~~~~~~~~~
cdnewlib.c:3569:12: warning: ‘Cache_Touch’ defined but not used [-Wunused-function]
 3569 | static int Cache_Touch (Cache *cache, long id)
      |            ^~~~~~~~~~~
cdnewlib.c:3506:12: warning: ‘Cache_Delete’ defined but not used [-Wunused-function]
 3506 | static int Cache_Delete (Cache *cache, long id)
      |            ^~~~~~~~~~~~
cdnewlib.c:638:18: warning: ‘_div’ defined but not used [-Wunused-variable]
  638 | static DivInfo * _div;
      |                  ^~~~
cdnewlib.c:582:15: warning: ‘_empty_string’ defined but not used [-Wunused-variable]
  582 | static char * _empty_string = "";
      |               ^~~~~~~~~~~~~
cdnewlib.c: In function ‘trmncmp’:
cdnewlib.c:2375:5: warning: ‘c1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2375 |  if (c1 == '/')
      |     ^
cdnewlib.c:2362:13: warning: ‘c2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2362 |  int i, c1, c2;
      |             ^~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_FileBuildPath.part.0’ at cdnewlib.c:2679:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 16 equals destination size [-Wstringop-overflow=]
cdnewlib.c: In function ‘UnixFileGets’:
cdnewlib.c:1509:6: warning: ‘ch’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1509 |   if (ch == '\0') {
      |      ^
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objacces.h:64,
                 from ../include/cdromlib.h:71,
                 from cdnewlib.c:208:
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2751:3:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘strncat’,
    inlined from ‘CdDevice_Init’ at cdnewlib.c:2769:6:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 256 equals destination size [-Wstringop-overflow=]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdnewlib.c: In function ‘TrmIndex_Lookup’:
cdnewlib.c:2168:27: warning: ‘term’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |                           ^~~~~~~~~~~~
cdnewlib.c:2168:6: warning: ‘d’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2168 |   if (d==0 && len == (int)strlen(term))
      |      ^
cdnewlib.c:2136:14: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2136 |  int lo, hi, mid, len, d;
      |              ^~~
cdnewlib.c: In function ‘UidIndex_Lookup’:
cdnewlib.c:1956:15: warning: ‘p’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1956 |  long *page, *p;
      |               ^
cdnewlib.c:1986:42: warning: ‘mid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1986 |  page_num = (uid < *p && mid >0) ? mid-1 : mid;
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF casn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from casn.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdconfig.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdconfig.c:75:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/ncbi.h:58,
                 from cdconfig.c:75:
cdconfig.c: In function ‘ChangeMedia’:
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:144:76: note: in expansion of macro ‘FALSE’
  144 | #define EjectCd(sVolume, deviceName, rawDeviceName, mountPoint, mountCmd)  FALSE
      |                                                                            ^~~~~
cdconfig.c:941:29: note: in expansion of macro ‘EjectCd’
  941 |                             EjectCd(toBeEjected->entrez_info->volume_label,
      |                             ^~~~~~~
../include/ncbistd.h:247:15: warning: statement with no effect [-Wunused-value]
  247 | #define FALSE ((Nlm_Boolean)0)
      |               ^
../include/ncbifile.h:145:76: note: in expansion of macro ‘FALSE’
  145 | #define MountCd(sVolume, deviceName, mountPoint, mountCmd)                 FALSE
      |                                                                            ^~~~~
cdconfig.c:960:17: note: in expansion of macro ‘MountCd’
  960 |                 MountCd(newMedia->entrez_info->volume_label, cdm->device_name,
      |                 ^~~~~~~
cdconfig.c: At top level:
cdconfig.c:191:17: warning: ‘UnMarkLRUineligible’ declared ‘static’ but never defined [-Wunused-function]
  191 | static void     UnMarkLRUineligible       PROTO((void));
      |                 ^~~~~~~~~~~~~~~~~~~
cdconfig.c: In function ‘EntrezInfoMerge’:
cdconfig.c:1257:45: warning: ‘besttype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1257 |                                     besttype->fields[f].num_terms;
      |                                     ~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/cdrom.h:9,
                 from objentr.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objentr.c: In function ‘CdRomAsnLoad’:
objentr.c:170:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  170 |     if (loaded)
      |     ^~
objentr.c:172:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  172 |         loaded = TRUE;
      |         ^~~~~~
objentr.c: In function ‘DocSumAsnRead’:
objentr.c:970:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  970 |    AsnReadFunc func;
      |                ^~~~
objentr.c:969:12: warning: unused variable ‘isError’ [-Wunused-variable]
  969 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
objentr.c:806:23: warning: ‘EntrezDivInfo_Destruct’ defined but not used [-Wunused-function]
  806 | static EntrezDivInfo* EntrezDivInfo_Destruct (EntrezDivInfo *div)
      |                       ^~~~~~~~~~~~~~~~~~~~~~
objentr.c:771:16: warning: ‘EntrezLinkInfo_AsnWrite’ defined but not used [-Wunused-function]
  771 | static Boolean EntrezLinkInfo_AsnWrite (const EntrezLinkInfo *link, AsnIo *stream, AsnType *type)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
objentr.c: In function ‘EntrezInfoAsnRead’:
objentr.c:392:4: warning: ‘div’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  392 |    EntrezDivInfo_AsnRead(div++,stream,atp);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:763:17: warning: ‘link’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  763 |  link->datasize = (int) val.intvalue;
      |  ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
objentr.c:240:18: note: ‘link’ was declared here
  240 |  EntrezLinkInfo *link;
      |                  ^~~~
objentr.c:704:19: warning: ‘fld’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  704 |    fld->post_type = (PostType) val.intvalue;
      |    ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
objentr.c:239:19: note: ‘fld’ was declared here
  239 |  EntrezFieldInfo *fld;
      |                   ^~~
objentr.c:649:18: warning: ‘tinf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |    tinf->asntype = (char*) val.ptrvalue;
      |    ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~
objentr.c:238:18: note: ‘tinf’ was declared here
  238 |  EntrezTypeInfo *tinf;
      |                  ^~~~
objentr.c:856:16: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  856 |     div->docs[i++] = val.intvalue;
      |               ~^~
objentr.c:824:7: note: ‘i’ was declared here
  824 |   int i;
      |       ^
rm -f libncbicdr.a
ar cru libncbicdr.a cdentrez.o cdromlib.o cdnewlib.o casn.o cdconfig.o objentr.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicdr.a ../lib
ranlib ../lib/libncbicdr.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibbutns.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibextra.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_LongToStr’:
vibfiles.c:735:19: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                   ^~~~
vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                  ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibforms.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibgroup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viblists.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmenus.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibprmpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibsbars.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibslate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibtexts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibutils.c: In function ‘Nlm_VibMessageHook’:
vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  776 |   percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" );
      |             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibwndws.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawing.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapping.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF picture.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF document.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF table.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF palette.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF diagnost.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF image.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictur3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prim3d5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF viewer3d.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vibmouse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF netscape.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF imagelst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF treeview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
treeview.c: In function ‘getNodeLength’:
treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  177 |     length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size);
      |             ^
treeview.c: In function ‘getIconId’:
treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  187 |     a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size);
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF shim3d.c
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3470:46: warning: unused variable ‘tmp’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                              ^~~
shim3d.c:3470:40: warning: unused variable ‘pCz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                        ^~~
shim3d.c:3470:34: warning: unused variable ‘pCy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                                  ^~~
shim3d.c:3470:28: warning: unused variable ‘pCx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                            ^~~
shim3d.c:3470:22: warning: unused variable ‘pNz’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                      ^~~
shim3d.c:3470:16: warning: unused variable ‘pNy’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |                ^~~
shim3d.c:3470:10: warning: unused variable ‘pNx’ [-Wunused-variable]
 3470 |         *pNx, *pNy, *pNz, *pCx, *pCy, *pCz, *tmp, *fblock = NULL;
      |          ^~~
shim3d.c:3469:47: warning: unused variable ‘Cz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                               ^~
shim3d.c:3469:42: warning: unused variable ‘Cy’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                          ^~
shim3d.c:3469:37: warning: unused variable ‘Cx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                     ^~
shim3d.c:3469:32: warning: unused variable ‘Nz’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                                ^~
shim3d.c:3469:27: warning: unused variable ‘Ny’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |                           ^~
shim3d.c:3469:15: warning: unused variable ‘Nx’ [-Wunused-variable]
 3469 |     GLdouble *Nx = NULL, *Ny, *Nz, *Cx, *Cy, *Cz,
      |               ^~
shim3d.c:3468:21: warning: unused variable ‘pi’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |                     ^~
shim3d.c:3468:15: warning: unused variable ‘sinj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |               ^~~~
shim3d.c:3468:9: warning: unused variable ‘cosj’ [-Wunused-variable]
 3468 |         cosj, sinj, pi = 3.14159265358979323846;
      |         ^~~~
shim3d.c:3467:33: warning: unused variable ‘prevlen’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                                 ^~~~~~~
shim3d.c:3467:29: warning: unused variable ‘Vz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                             ^~
shim3d.c:3467:25: warning: unused variable ‘Vy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                         ^~
shim3d.c:3467:21: warning: unused variable ‘Vx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                     ^~
shim3d.c:3467:17: warning: unused variable ‘Hz’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |                 ^~
shim3d.c:3467:13: warning: unused variable ‘Hy’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |             ^~
shim3d.c:3467:9: warning: unused variable ‘Hx’ [-Wunused-variable]
 3467 |         Hx, Hy, Hz, Vx, Vy, Vz, prevlen,
      |         ^~
shim3d.c:3466:21: warning: unused variable ‘dQtz’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |                     ^~~~
shim3d.c:3466:15: warning: unused variable ‘dQty’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |               ^~~~
shim3d.c:3466:9: warning: unused variable ‘dQtx’ [-Wunused-variable]
 3466 |         dQtx, dQty, dQtz, /*ddQtx, ddQty, ddQtz,*/
      |         ^~~~
shim3d.c:3464:14: warning: unused variable ‘len’ [-Wunused-variable]
 3464 |     GLdouble len, R1x, R1y, R1z, R2x, R2y, R2z, MG[4][3],
      |              ^~~
shim3d.c:3463:26: warning: unused variable ‘offset’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
shim3d.c:3463:23: warning: unused variable ‘m’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                       ^
shim3d.c:3463:20: warning: unused variable ‘k’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                    ^
shim3d.c:3463:17: warning: unused variable ‘j’ [-Wunused-variable]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                 ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF odlbox.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
rm -f libvibrant.a
ar cru libvibrant.a vibbutns.o vibextra.o vibfiles.o vibforms.o vibgroup.o viblists.o vibmenus.o vibprmpt.o vibsbars.o vibslate.o vibtexts.o vibutils.o vibwndws.o vibmain.o ncbidraw.o drawing.o mapping.o picture.o viewer.o document.o table.o palette.o diagnost.o image.o pictur3d.o prim3d1.o prim3d2.o prim3d3.o prim3d4.o prim3d5.o viewer3d.o vibmouse.o netscape.o imagelst.o treeview.o shim3d.o odlbox.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrant.a ../lib
ranlib ../lib/libvibrant.a
mv vibbutns.o vibbutns.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibbutns.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibbutns.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibbutns.c: In function ‘Nlm_CheckCallback’:
vibbutns.c:354:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  354 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_RadioCallback’:
vibbutns.c:373:20: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
  373 |   Nlm_ControlTool  c;
      |                    ^
vibbutns.c: In function ‘Nlm_SetButtonStatus’:
vibbutns.c:694:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
  694 |   Nlm_Int2         val;
      |                    ^~~
mv vibbutns.o vibbutns.glo
mv vibbutns.tmp vibbutns.o
mv vibextra.o vibextra.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibextra.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibextra.c:87:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibextra.o vibextra.glo
mv vibextra.tmp vibextra.o
mv vibfiles.o vibfiles.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibfiles.c: In function ‘Nlm_CardToStr’:
vibfiles.c:715:19: warning: ‘%*u’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                   ^~~
vibfiles.c:715:18: note: directive argument in the range [0, 65535]
  715 |   sprintf (temp, "%*u", length, (int)cardval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_IntToStr’:
vibfiles.c:725:19: warning: ‘%*d’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  725 |   sprintf (temp, "%*d", length, intval);
      |                   ^~~
vibfiles.c:725:18: note: directive argument in the range [-32768, 32767]
  725 |   sprintf (temp, "%*d", length, intval);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vibfiles.c: In function ‘Nlm_LongToStr’:
vibfiles.c:735:19: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 80 [-Wformat-overflow=]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                   ^~~~
vibfiles.c:735:18: note: directive argument in the range [-2147483648, 2147483647]
  735 |   sprintf (temp, "%*ld", length, (long)longval);
      |                  ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibfiles.c:54:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv vibfiles.o vibfiles.glo
mv vibfiles.tmp vibfiles.o
mv vibforms.o vibforms.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibforms.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibforms.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibforms.o vibforms.glo
mv vibforms.tmp vibforms.o
mv vibgroup.o vibgroup.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibgroup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibgroup.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibgroup.o vibgroup.glo
mv vibgroup.tmp vibgroup.o
mv viblists.o viblists.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viblists.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from viblists.c:164:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
viblists.c: In function ‘Nlm_SetListPosition’:
viblists.c:1121:15: warning: variable ‘is_realized’ set but not used [-Wunused-but-set-variable]
 1121 |   Nlm_Boolean is_realized;
      |               ^~~~~~~~~~~
mv viblists.o viblists.glo
mv viblists.tmp viblists.o
mv vibmenus.o vibmenus.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmenus.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmenus.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmenus.c: In function ‘Nlm_IsMenuItemChecked’:
vibmenus.c:563:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  563 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_CheckMenuItem’:
vibmenus.c:591:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
  591 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableMenuItem’:
vibmenus.c:2006:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2006 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2005:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2005 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoice’:
vibmenus.c:2072:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2072 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceGroup’:
vibmenus.c:2122:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2122 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_EnableChoiceItem’:
vibmenus.c:2166:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2166 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2164:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2164 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableMenuItem’:
vibmenus.c:2329:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2329 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2328:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2328 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoice’:
vibmenus.c:2395:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2395 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_DisableChoiceItem’:
vibmenus.c:2489:17: warning: variable ‘itm’ set but not used [-Wunused-but-set-variable]
 2489 |   Nlm_Int2      itm;
      |                 ^~~
vibmenus.c:2487:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2487 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_RemoveSubMenu’:
vibmenus.c:2627:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2627 |   Nlm_MenuTool     h;
      |                    ^
vibmenus.c: In function ‘Nlm_CountMenuItems’:
vibmenus.c:3056:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3056 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetMenuItem’:
vibmenus.c:3239:17: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 3239 |   Nlm_MenuTool  h;
      |                 ^
vibmenus.c: In function ‘Nlm_GetPopListTitle’:
vibmenus.c:3349:18: warning: variable ‘m’ set but not used [-Wunused-but-set-variable]
 3349 |   Nlm_MenU       m;
      |                  ^
vibmenus.c: In function ‘Nlm_AppendItems’:
vibmenus.c:3978:17: warning: unused variable ‘accel’ [-Wunused-variable]
 3978 |   Nlm_Char      accel;
      |                 ^~~~~
vibmenus.c: In function ‘Nlm_NewPopupList’:
vibmenus.c:4969:19: warning: unused variable ‘lbl’ [-Wunused-variable]
 4969 |   Widget          lbl;
      |                   ^~~
vibmenus.c:4967:19: warning: unused variable ‘color’ [-Wunused-variable]
 4967 |   Pixel           color;
      |                   ^~~~~
mv vibmenus.o vibmenus.glo
mv vibmenus.tmp vibmenus.o
mv vibprmpt.o vibprmpt.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibprmpt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibprmpt.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibprmpt.o vibprmpt.glo
mv vibprmpt.tmp vibprmpt.o
mv vibsbars.o vibsbars.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibsbars.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibsbars.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibsbars.o vibsbars.glo
mv vibsbars.tmp vibsbars.o
mv vibslate.o vibslate.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibslate.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibslate.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibslate.c: In function ‘Nlm_EnableSlate’:
vibslate.c:1199:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1199 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_DisableSlate’:
vibslate.c:1254:18: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 1254 |   Nlm_SlateTool  h;
      |                  ^
vibslate.c: In function ‘Nlm_SelectSlate’:
vibslate.c:1515:5: warning: missing sentinel in function call [-Wformat=]
 1515 |     XtVaGetValues (h, XmNbackground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c:1517:5: warning: missing sentinel in function call [-Wformat=]
 1517 |     XtVaGetValues (h, XmNforeground, &color, 0);
      |     ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SelectPanel’:
vibslate.c:1544:3: warning: missing sentinel in function call [-Wformat=]
 1544 |   XtVaGetValues (h, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:1546:3: warning: missing sentinel in function call [-Wformat=]
 1546 |   XtVaGetValues (h, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateClick’:
vibslate.c:2026:20: warning: variable ‘h’ set but not used [-Wunused-but-set-variable]
 2026 |   Nlm_SlateTool    h;
      |                    ^
vibslate.c: In function ‘Nlm_SlateClickCallback’:
vibslate.c:2157:3: warning: missing sentinel in function call [-Wformat=]
 2157 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2159:3: warning: missing sentinel in function call [-Wformat=]
 2159 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateInputCallback’:
vibslate.c:2313:7: warning: missing sentinel in function call [-Wformat=]
 2313 |       XtVaGetValues(w, XmNbackground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c:2315:7: warning: missing sentinel in function call [-Wformat=]
 2315 |       XtVaGetValues(w, XmNforeground, &color, 0);
      |       ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_SlateDrawCallback’:
vibslate.c:2359:3: warning: missing sentinel in function call [-Wformat=]
 2359 |   XtVaGetValues (w, XmNbackground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c:2361:3: warning: missing sentinel in function call [-Wformat=]
 2361 |   XtVaGetValues (w, XmNforeground, &color, 0);
      |   ^~~~~~~~~~~~~
vibslate.c: In function ‘Nlm_Set3DColorMap’:
vibslate.c:2686:17: warning: unused variable ‘testvisual’ [-Wunused-variable]
 2686 |         Boolean testvisual;
      |                 ^~~~~~~~~~
vibslate.c:2685:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 2685 |         int defaultdepth;
      |             ^~~~~~~~~~~~
mv vibslate.o vibslate.glo
mv vibslate.tmp vibslate.o
mv vibtexts.o vibtexts.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibtexts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibtexts.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibtexts.c: In function ‘Nlm_TextCallback’:
vibtexts.c:2982:24: warning: unused variable ‘cbs’ [-Wunused-variable]
 2982 |   XmAnyCallbackStruct *cbs = (XmAnyCallbackStruct *)call_data;
      |                        ^~~
vibtexts.c: In function ‘Nlm_LoseFocusCallback’:
vibtexts.c:2999:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 2999 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
vibtexts.c: In function ‘Nlm_TabCallback’:
vibtexts.c:3109:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3109 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenReturnCallback’:
vibtexts.c:3122:15: warning: variable ‘event’ set but not used [-Wunused-but-set-variable]
 3122 |   XKeyEvent  *event;
      |               ^~~~~
vibtexts.c: In function ‘Nlm_HiddenActivateCallback’:
vibtexts.c:3135:25: warning: variable ‘cbs’ set but not used [-Wunused-but-set-variable]
 3135 |   XmAnyCallbackStruct  *cbs;
      |                         ^~~
mv vibtexts.o vibtexts.glo
mv vibtexts.tmp vibtexts.o
mv vibutils.o vibutils.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from vibutils.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibutils.c: In function ‘Nlm_VibMessageHook’:
vibutils.c:776:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  776 |   percent = (Nlm_Int4)Nlm_GetAppProperty( "VibrantMessageWidthMax" );
      |             ^
mv vibutils.o vibutils.glo
mv vibutils.tmp vibutils.o
mv vibwndws.o vibwndws.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibwndws.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibwndws.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibwndws.c: In function ‘Nlm_SetColorMap’:
vibwndws.c:1060:13: warning: variable ‘defaultdepth’ set but not used [-Wunused-but-set-variable]
 1060 |         int defaultdepth;
      |             ^~~~~~~~~~~~
vibwndws.c: In function ‘Nlm_SetWindowTitle’:
vibwndws.c:1567:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1567 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_GetWindowTitle’:
vibwndws.c:1610:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 1610 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_NewWindow’:
vibwndws.c:2155:19: warning: variable ‘screen_num’ set but not used [-Wunused-but-set-variable]
 2155 |   int             screen_num;
      |                   ^~~~~~~~~~
vibwndws.c: In function ‘Nlm_HideWindow’:
vibwndws.c:2526:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2526 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowNormal’:
vibwndws.c:2969:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 2969 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowModal’:
vibwndws.c:3014:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3014 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_ShowDocument’:
vibwndws.c:3060:19: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 3060 |   Nlm_WindowTool  wptr;
      |                   ^~~~
vibwndws.c: In function ‘Nlm_VibMainPrelude’:
vibwndws.c:6800:13: warning: unused variable ‘retval’ [-Wunused-variable]
 6800 |   Nlm_Int2  retval;
      |             ^~~~~~
vibwndws.c: In function ‘Nlm_RemoveDyingWindows’:
vibwndws.c:6922:20: warning: variable ‘wptr’ set but not used [-Wunused-but-set-variable]
 6922 |   Nlm_WindowTool   wptr;
      |                    ^~~~
At top level:
vibwndws.c:1318:16: warning: ‘Nlm_StandardColormap’ defined but not used [-Wunused-function]
 1318 | static Boolean Nlm_StandardColormap(Colormap *cMap,
      |                ^~~~~~~~~~~~~~~~~~~~
mv vibwndws.o vibwndws.glo
mv vibwndws.tmp vibwndws.o
mv vibmain.o vibmain.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from vibmain.c:40:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vibmain.c:121:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  121 | main (int argc, char *argv[])
      | ^~~~
mv vibmain.o vibmain.glo
mv vibmain.tmp vibmain.o
mv ncbidraw.o ncbidraw.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL ncbidraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidraw.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv ncbidraw.o ncbidraw.glo
mv ncbidraw.tmp ncbidraw.o
mv drawing.o drawing.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL drawing.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from drawing.c:128:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv drawing.o drawing.glo
mv drawing.tmp drawing.o
mv mapping.o mapping.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL mapping.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from mapping.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapping.c: In function ‘Nlm_MapRectToWorldBox’:
mapping.c:139:8: warning: variable ‘curScale’ set but not used [-Wunused-but-set-variable]
  139 |   Int4 curScale;
      |        ^~~~~~~~
mv mapping.o mapping.glo
mv mapping.tmp mapping.o
mv picture.o picture.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL picture.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbidraw.h:47,
                 from picture.c:100:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv picture.o picture.glo
mv picture.tmp picture.o
mv viewer.o viewer.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from viewer.c:120:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv viewer.o viewer.glo
mv viewer.tmp viewer.o
mv document.o document.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL document.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from document.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
document.c: In function ‘Nlm_PrintDocument’:
document.c:4419:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4419 |       system (cmmd);
      |       ^~~~~~~~~~~~~
document.c:4423:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4423 |       system (cmmd);
      |       ^~~~~~~~~~~~~
mv document.o document.glo
mv document.tmp document.o
mv table.o table.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL table.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from table.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv table.o table.glo
mv table.tmp table.o
mv palette.o palette.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL palette.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/panels.h:68,
                 from palette.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv palette.o palette.glo
mv palette.tmp palette.o
mv diagnost.o diagnost.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL diagnost.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from diagnost.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv diagnost.o diagnost.glo
mv diagnost.tmp diagnost.o
mv image.o image.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL image.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from image.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
image.c: In function ‘ShiftXMask’:
image.c:840:26: warning: suggest parentheses around ‘+’ inside ‘>>’ [-Wparentheses]
  840 |         if(!((mask >> hi + low) & (unsigned long)1)) break;
      |                       ~~~^~~~~
mv image.o image.glo
mv image.tmp image.o
mv pictur3d.o pictur3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL pictur3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/pictur3d.h:49,
                 from ../include/ppict3d.h:49,
                 from pictur3d.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pictur3d.c: In function ‘Nlm_DeleteFromSeg’:
pictur3d.c:114:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  114 |     else seg->first = b->next;
      |     ^~~~
pictur3d.c:115:3: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  115 |   if ( seg->last == b ) seg->last = bprev;
      |   ^~
mv pictur3d.o pictur3d.glo
mv pictur3d.tmp pictur3d.o
mv prim3d1.o prim3d1.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d1.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d1.o prim3d1.glo
mv prim3d1.tmp prim3d1.o
mv prim3d2.o prim3d2.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d2.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d2.o prim3d2.glo
mv prim3d2.tmp prim3d2.o
mv prim3d3.o prim3d3.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d3.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d3.o prim3d3.glo
mv prim3d3.tmp prim3d3.o
mv prim3d4.o prim3d4.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d4.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d4.o prim3d4.glo
mv prim3d4.tmp prim3d4.o
mv prim3d5.o prim3d5.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL prim3d5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from prim3d5.c:66:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv prim3d5.o prim3d5.glo
mv prim3d5.tmp prim3d5.o
mv viewer3d.o viewer3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL viewer3d.c
mv viewer3d.o viewer3d.glo
mv viewer3d.tmp viewer3d.o
mv vibmouse.o vibmouse.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL vibmouse.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vibmouse.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv vibmouse.o vibmouse.glo
mv vibmouse.tmp vibmouse.o
mv netscape.o netscape.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL netscape.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from netscape.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netscape.c: In function ‘NS_Obtain_lock’:
netscape.c:236:10: warning: variable ‘waited’ set but not used [-Wunused-but-set-variable]
  236 |     Bool waited = False;
      |          ^~~~~~
mv netscape.o netscape.glo
mv netscape.tmp netscape.o
mv imagelst.o imagelst.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL imagelst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/imagelst.h:52,
                 from imagelst.c:61:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv imagelst.o imagelst.glo
mv imagelst.tmp imagelst.o
mv treeview.o treeview.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL treeview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/treemgr.h:67,
                 from treeview.c:91:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
treeview.c: In function ‘getNodeLength’:
treeview.c:177:13: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  177 |     length= (Int4)tree_getNode(cursor, TREE_NODE_FMT_DISTANCE, &size);
      |             ^
treeview.c: In function ‘getIconId’:
treeview.c:187:8: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
  187 |     a= (Int4) tree_getNode(cursor, TREE_NODE_FMT_ICON, &size);
      |        ^
mv treeview.o treeview.glo
mv treeview.tmp treeview.o
mv shim3d.o shim3d.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL shim3d.c
shim3d.c: In function ‘OGL_AddCylinder3D’:
shim3d.c:918:14: warning: unused variable ‘iCount’ [-Wunused-variable]
  918 |     Nlm_Int4 iCount;
      |              ^~~~~~
shim3d.c: In function ‘OGL_AddText3D’:
shim3d.c:1210:22: warning: unused variable ‘i’ [-Wunused-variable]
 1210 |     Nlm_Int4 Length, i;
      |                      ^
shim3d.c: In function ‘OGL_Zoom_DragMA’:
shim3d.c:1770:16: warning: unused variable ‘OGL_Data’ [-Wunused-variable]
 1770 |     TOGL_Data *OGL_Data = MAToOGL(ma);
      |                ^~~~~~~~
shim3d.c: In function ‘write_row_callback’:
shim3d.c:2923:48: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2923 |             (((float) row) / (-nRows)) * ((end - start) / 15)
      |                                           ~~~~~^~~~~~~~
shim3d.c:2923:48: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from shim3d.c:331:
In function ‘strncpy’,
    inlined from ‘Nlm_FindAvailableFonts’ at shim3d.c:2234:9:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 256 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
shim3d.c: In function ‘SetOGLFont’:
shim3d.c:2381:64: warning: ‘closest’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2381 |             fontInfo = XLoadQueryFont(Nlm_currentXDisplay, list[closest]);
      |                                                                ^
shim3d.c:2381:64: warning: ‘list’ may be used uninitialized in this function [-Wmaybe-uninitialized]
shim3d.c: In function ‘Nlm_AddHalfWorm3D’:
shim3d.c:3667:28: warning: ‘prevlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3667 |                 if (m == 0 || len < prevlen) {
      |                     ~~~~~~~^~~~~~~~~~~~~~~~
shim3d.c:3463:26: warning: ‘offset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3463 |     Nlm_Int4 i, j, k, m, offset;
      |                          ^~~~~~
mv shim3d.o shim3d.glo
mv shim3d.tmp shim3d.o
mv odlbox.o odlbox.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL odlbox.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from odlbox.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
odlbox.c: In function ‘LB_onVScroll’:
odlbox.c:424:12: warning: variable ‘IsGoUp’ set but not used [-Wunused-but-set-variable]
  424 | Boolean    IsGoUp=FALSE;
      |            ^~~~~~
mv odlbox.o odlbox.glo
mv odlbox.tmp odlbox.o
rm -f libvibrantOGL.a
ar cru libvibrantOGL.a vibbutns.glo vibextra.glo vibfiles.glo vibforms.glo vibgroup.glo viblists.glo vibmenus.glo vibprmpt.glo vibsbars.glo vibslate.glo vibtexts.glo vibutils.glo vibwndws.glo vibmain.glo ncbidraw.glo drawing.glo mapping.glo picture.glo viewer.glo document.glo table.glo palette.glo diagnost.glo image.glo pictur3d.glo prim3d1.glo prim3d2.glo prim3d3.glo prim3d4.glo prim3d5.glo viewer3d.glo vibmouse.glo netscape.glo imagelst.glo treeview.glo shim3d.glo odlbox.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibrantOGL.a ../lib
ranlib ../lib/libvibrantOGL.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accentr.c: In function ‘EntrezBiostrucGet’:
accentr.c:2113:17: warning: unused variable ‘retval’ [-Wunused-variable]
 2113 |     BiostrucPtr retval = NULL;
      |                 ^~~~~~
accentr.c: In function ‘EntrezGIForSeqIdFunc’:
accentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
accentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
accentr.c: In function ‘EntrezMedlineEntryGet’:
accentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
accentr.c: In function ‘EntrezSeqEntryGet’:
accentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from accentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF accutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from ../include/accutils.h:119,
                 from accutils.c:149:
In function ‘strncpy’,
    inlined from ‘EntrezFieldToString’ at accutils.c:691:13:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ output may be truncated copying 5 bytes from a string of length 6 [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiacc.a
ar cru libncbiacc.a accentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiacc.a ../lib
ranlib ../lib/libncbiacc.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF drawseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from drawseq.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
drawseq.c: In function ‘AddFlatNodeSymbol’:
drawseq.c:811:7: warning: unused variable ‘symbol_height’ [-Wunused-variable]
  811 |  Int4 symbol_height = 8;
      |       ^~~~~~~~~~~~~
drawseq.c: In function ‘AddAlignBlocks’:
drawseq.c:970:7: warning: variable ‘c_num’ set but not used [-Wunused-but-set-variable]
  970 |  Int2 c_num;
      |       ^~~~~
drawseq.c: In function ‘AddAlignFeature’:
drawseq.c:1369:8: warning: unused variable ‘ptype’ [-Wunused-variable]
 1369 |  Uint1 ptype = 0;
      |        ^~~~~
drawseq.c: In function ‘AddAlignmentMismatch’:
drawseq.c:1523:7: warning: variable ‘i_right’ set but not used [-Wunused-but-set-variable]
 1523 |  Int4 i_right;
      |       ^~~~~~~
drawseq.c: In function ‘DrawRestrictionMap’:
drawseq.c:1811:10: warning: unused variable ‘retval’ [-Wunused-variable]
 1811 |  Boolean retval = FALSE;
      |          ^~~~~~
drawseq.c:1802:15: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1802 |  Int4 x1, x2, center;
      |               ^~~~~~
drawseq.c: In function ‘DrawFeatures’:
drawseq.c:2563:7: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2563 |  Int2 entityID;
      |       ^~~~~~~~
drawseq.c: In function ‘DrawOneSeqLoc’:
drawseq.c:3020:10: warning: variable ‘show_seq_label’ set but not used [-Wunused-but-set-variable]
 3020 |  Boolean show_seq_label = TRUE; /*show the label of a sequence*/
      |          ^~~~~~~~~~~~~~
drawseq.c:3009:10: warning: variable ‘ends’ set but not used [-Wunused-but-set-variable]
 3009 |  Boolean ends;
      |          ^~~~
drawseq.c: In function ‘Label_GData’:
drawseq.c:3439:10: warning: variable ‘success’ set but not used [-Wunused-but-set-variable]
 3439 |  Boolean success = FALSE;
      |          ^~~~~~~
drawseq.c: In function ‘DrawEquivAlign’:
drawseq.c:3594:8: warning: unused variable ‘my_gray_color’ [-Wunused-variable]
 3594 |  Uint1 my_gray_color[]={63, 63, 63};
      |        ^~~~~~~~~~~~~
drawseq.c: In function ‘load_align_label_rectangle’:
drawseq.c:4352:10: warning: variable ‘found_it’ set but not used [-Wunused-but-set-variable]
 4352 |  Boolean found_it;
      |          ^~~~~~~~
drawseq.c: In function ‘PicForAlignNode’:
drawseq.c:4558:18: warning: variable ‘min_scale’ set but not used [-Wunused-but-set-variable]
 4558 |  Int4 max_width, min_scale;
      |                  ^~~~~~~~~
At top level:
drawseq.c:3525:22: warning: ‘get_ith_arp’ defined but not used [-Wunused-function]
 3525 | static AlignRangePtr get_ith_arp(AlignRangePtr arp, Int2 i)
      |                      ^~~~~~~~~~~
drawseq.c:3511:18: warning: ‘get_map_pos’ defined but not used [-Wunused-function]
 3511 | static MapPosPtr get_map_pos(MapLayoutPtr mlp, SeqIdPtr sip)
      |                  ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotmatrx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dotmatrx.h:47,
                 from dotmatrx.c:32:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fea2seg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fea2seg.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF fstyle.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from fstyle.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg1.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg2.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smdlg2.c: In function ‘Nlm_CreateDlgGroup’:
smdlg2.c:631:12: warning: variable ‘toAlign’ set but not used [-Wunused-but-set-variable]
  631 |   Handle   toAlign[3];
      |            ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smdlg3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smdlg3.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smtools.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
smtools.c: In function ‘Nlm_CtreateToolsSM’:
smtools.c:534:30: warning: ‘%s’ directive writing up to 227 bytes into a region of size 32 [-Wformat-overflow=]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                              ^~
smtools.c:534:29: note: directive argument in the range [-32768, 32767]
  534 |     sprintf ( fullFontName, "%s %d", fontNames[i].name, fontNames[i].size );
      |                             ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from smtools.c:48:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 235 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF styleman.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from styleman.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stylemui.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from stylemui.c:48:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF glbpic.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from glbpic.c:22:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
glbpic.c: In function ‘label_linear_mark’:
glbpic.c:1295:7: warning: unused variable ‘tick_len’ [-Wunused-variable]
 1295 |  Int4 tick_len = TICK_LEN;
      |       ^~~~~~~~
glbpic.c: In function ‘add_alignment_to_global’:
glbpic.c:1552:8: warning: variable ‘p_val’ set but not used [-Wunused-but-set-variable]
 1552 |  Uint1 p_val;
      |        ^~~~~
At top level:
glbpic.c:1748:16: warning: ‘get_print_score’ defined but not used [-Wunused-function]
 1748 | static Boolean get_print_score(FloatHi min_score, FloatHi max_score, CharPtr label, Uint1 status)
      |                ^~~~~~~~~~~~~~~
glbpic.c:584:19: warning: ‘extract_align_range’ defined but not used [-Wunused-function]
  584 | static ValNodePtr extract_align_range(ValNodePtr PNTR arp_list, Uint1 displayOrder)
      |                   ^~~~~~~~~~~~~~~~~~~
glbpic.c: In function ‘get_circle_label_align’:
glbpic.c:2349:9: warning: ‘align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2349 |  return align;
      |         ^~~~~
In file included from ../include/glbpic.h:7,
                 from glbpic.c:23:
glbpic.c: In function ‘add_alignment_to_global’:
../include/picture.h:520:22: warning: ‘g_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  520 | #define AddTextLabel Nlm_AddTextLabel
      |                      ^~~~~~~~~~~~~~~~
glbpic.c:1560:7: note: ‘g_top’ was declared here
 1560 |  Int4 g_top, g_bottom;
      |       ^~~~~
glbpic.c: In function ‘label_circle_mark’:
glbpic.c:2479:6: warning: ‘first_align’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2479 |      switch(label_align)
      |      ^~~~~~
glbpic.c:2474:26: warning: ‘first_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2474 |        if(ABS(first_left - left) < (t_width +3))
      |                          ^
glbpic.c:2473:24: warning: ‘first_top’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2473 |       if(ABS(first_top - top )< (font_height+3))
      |                        ^
glbpic.c: In function ‘Draw_Global’:
glbpic.c:1943:8: warning: ‘seglen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1943 |   Int4 seglen;
      |        ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF layout.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/maputil.h:113,
                 from ../include/jzcoll.h:123,
                 from ../include/layout.h:3,
                 from layout.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
layout.c: In function ‘LayoutNodeFlat’:
layout.c:326:24: warning: variable ‘prev’ set but not used [-Wunused-but-set-variable]
  326 |  ValNodePtr vnp, next, prev;
      |                        ^~~~
layout.c: In function ‘layout_uncompressed_group’:
layout.c:1244:20: warning: variable ‘group_stop’ set but not used [-Wunused-but-set-variable]
 1244 |  Int2 group_start, group_stop;
      |                    ^~~~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1365:17: warning: variable ‘y_next’ set but not used [-Wunused-but-set-variable]
 1365 |  Int4 cur_line, y_next;
      |                 ^~~~~~
layout.c:1364:17: warning: variable ‘labelstyle’ set but not used [-Wunused-but-set-variable]
 1364 |  Int4 segstyle, labelstyle;
      |                 ^~~~~~~~~~
layout.c:1363:10: warning: variable ‘show_trunc’ set but not used [-Wunused-but-set-variable]
 1363 |  Boolean show_trunc = FALSE;
      |          ^~~~~~~~~~
layout.c:1350:10: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 1350 |  Int2 i, k;
      |          ^
layout.c: In function ‘LayoutAlignNode’:
layout.c:2208:7: warning: unused variable ‘num’ [-Wunused-variable]
 2208 |  Int4 num = 0;
      |       ^~~
At top level:
layout.c:1779:16: warning: ‘modify_master_line’ defined but not used [-Wunused-function]
 1779 | static Boolean modify_master_line(ValNodePtr vnp, Int4Ptr m_left, Int4Ptr m_right, Int4 maxScale, Uint1 label_align)
      |                ^~~~~~~~~~~~~~~~~~
layout.c: In function ‘GroupFeatNode’:
layout.c:636:14: warning: ‘prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  636 |   prev->next = new;
      |   ~~~~~~~~~~~^~~~~
layout.c:594:35: note: ‘prev’ was declared here
  594 |  ValNodePtr my_node = NULL, curr, prev, next;
      |                                   ^~~~
layout.c: In function ‘OrderCdsmRNA’:
layout.c:969:14: warning: ‘m_missed’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  969 |       else if(missed == m_missed && m_offset > offset)
      |              ^
layout.c:940:15: note: ‘m_missed’ was declared here
  940 |  Int2 missed, m_missed; /*number of exons missed at both end*/
      |               ^~~~~~~~
layout.c: In function ‘LayoutFeatNode’:
layout.c:1503:12: warning: ‘p_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1503 |    p_right = MAX(right, p_right);
layout.c:1502:11: warning: ‘p_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1502 |    p_left = MIN(left, p_left);
layout.c: In function ‘LayoutAlignNode’:
layout.c:2215:17: warning: ‘next_line’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2215 |  Int4 cur_line, next_line;
      |                 ^~~~~~~~~
layout.c:2251:7: warning: ‘next’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2251 |   i = find_align_line_number(anp, vnp->next,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 2252 |    label_align, &next, &line_status_list, m_right, maxScale);
      |    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saldist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/saldist.h:48,
                 from saldist.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saldist.c: In function ‘AAcode’:
saldist.c:1003:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |   ^~
saldist.c:1003:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1003 |   if (car=='A') return(1);  if (car=='B') return(2);
      |                             ^~
saldist.c:1004:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |   ^~
saldist.c:1004:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1004 |   if (car=='C') return(3);  if (car=='D') return(4);
      |                             ^~
saldist.c:1005:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |   ^~
saldist.c:1005:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1005 |   if (car=='E') return(5);  if (car=='F') return(6);
      |                             ^~
saldist.c:1006:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |   ^~
saldist.c:1006:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1006 |   if (car=='G') return(7);  if (car=='H') return(8);
      |                             ^~
saldist.c:1007:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |   ^~
saldist.c:1007:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1007 |   if (car=='I') return(9);  if (car=='K') return(10);
      |                             ^~
saldist.c:1008:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |   ^~
saldist.c:1008:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1008 |   if (car=='L') return(11); if (car=='M') return(12);
      |                             ^~
saldist.c:1009:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |   ^~
saldist.c:1009:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1009 |   if (car=='N') return(13); if (car=='P') return(14);
      |                             ^~
saldist.c:1010:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |   ^~
saldist.c:1010:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1010 |   if (car=='Q') return(15); if (car=='R') return(16);
      |                             ^~
saldist.c:1011:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |   ^~
saldist.c:1011:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1011 |   if (car=='S') return(17); if (car=='T') return(18);
      |                             ^~
saldist.c:1012:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |   ^~
saldist.c:1012:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1012 |   if (car=='V') return(19); if (car=='W') return(20);
      |                             ^~
saldist.c:1013:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |   ^~
saldist.c:1013:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1013 |   if (car=='X') return(21); if (car=='Y') return(22);
      |                             ^~
saldist.c:1014:3: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |   ^~
saldist.c:1014:29: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1014 |   if (car=='Z') return(23); if (car=='U') return(24);
      |                             ^~
saldist.c: In function ‘copy_string’:
saldist.c:1289:12: warning: value computed is not used [-Wunused-value]
 1289 |            *from++;
      |            ^~~~~~~
saldist.c:1302:11: warning: value computed is not used [-Wunused-value]
 1302 |           *from++;
      |           ^~~~~~~
saldist.c: In function ‘nss_ref_complength’:
saldist.c:1479:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1479 |              if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                 ^
saldist.c:1455:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |                ^~
saldist.c:1455:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1455 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_pw_complength’:
saldist.c:1572:18: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1572 |               if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                  ^
saldist.c:1547:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |                ^~
saldist.c:1547:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1547 |            c1, c2;
      |            ^~
saldist.c: In function ‘nss_gp_complength’:
saldist.c:1675:21: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1675 |                  if (s1[0] != '-' && s1[1] != '-' && s1[2] != '-' && s2[0] != '-' && s2[1] != '-' && s2[2] != '-')
      |                     ^
saldist.c:1640:16: warning: variable ‘c2’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |                ^~
saldist.c:1640:12: warning: variable ‘c1’ set but not used [-Wunused-but-set-variable]
 1640 |            c1, c2;
      |            ^~
saldist.c: In function ‘SortbySimProc’:
saldist.c:2139:31: warning: variable ‘newsalpd’ set but not used [-Wunused-but-set-variable]
 2139 |   SeqAlignPtr        newsalp, newsalpd;
      |                               ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saldist.c:49:
saldist.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
saldist.c:1853:22: warning: ‘scangp_calcul’ defined but not used [-Wunused-function]
 1853 | static Int4Ptr PNTR  scangp_calcul (EditAlignDataPtr adp, Int2 seq1, Int2 seq2, Int4 from, Int4 to, Int2 group, Int2 choice, Int2 win_width)
      |                      ^~~~~~~~~~~~~
saldist.c:1080:24: warning: ‘FloatLomatrix’ defined but not used [-Wunused-function]
 1080 | static FloatLoPtr PNTR FloatLomatrix (Int2 nrows, Int2 ncol)
      |                        ^~~~~~~~~~~~~
saldist.c:999:13: warning: ‘AAcode’ defined but not used [-Wunused-function]
  999 | static Int2 AAcode(Char car)
      |             ^~~~~~
saldist.c:928:16: warning: ‘new_matrice’ defined but not used [-Wunused-function]
  928 | static Boolean new_matrice (Int2 simmatrix, CharPtr path)
      |                ^~~~~~~~~~~
saldist.c:910:14: warning: ‘matrixlst’ defined but not used [-Wunused-variable]
  910 | static Char *matrixlst [] = {"", "idmat",
      |              ^~~~~~~~~
saldist.c: In function ‘writematrixhalf.constprop’:
saldist.c:1225:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1225 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c: In function ‘PwDistanceItem’:
saldist.c:1151:18: warning: ‘vnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1151 |               vnp=vnp->next;
      |               ~~~^~~~~~~~~~
saldist.c:1104:19: note: ‘vnp’ was declared here
 1104 |   ValNodePtr      vnp,
      |                   ^~~
saldist.c: In function ‘SortbyLenItem’:
saldist.c:2191:14: warning: ‘mink’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |      sortlst [mink] = j + 1;
      |              ^
saldist.c:2172:28: note: ‘mink’ was declared here
 2172 |   Int2               j, k, mink;
      |                            ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF saled.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from saled.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
saled.c: In function ‘ReadAlignmentForSeqEntry’:
saled.c:3310:21: warning: unused variable ‘dirty’ [-Wunused-variable]
 3310 |                     dirty = FALSE;
      |                     ^~~~~
saled.c:3306:21: warning: unused variable ‘salp’ [-Wunused-variable]
 3306 |   SeqAlignPtr       salp=NULL,
      |                     ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from saled.c:49:
saled.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from saled.c:55:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salfiles.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from ../include/salfiles.h:48,
                 from salfiles.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salfiles.c: In function ‘NewFastaRead’:
salfiles.c:315:30: warning: variable ‘lastsegsip’ set but not used [-Wunused-but-set-variable]
  315 |   SeqIdPtr      segsip=NULL, lastsegsip=NULL;
      |                              ^~~~~~~~~~
salfiles.c: In function ‘ReadAlignmentToStrings’:
salfiles.c:664:16: warning: unused variable ‘nseq’ [-Wunused-variable]
  664 |   Int2         nseq = 0;
      |                ^~~~
salfiles.c: In function ‘MacawRead’:
salfiles.c:1257:15: warning: unused variable ‘vnp’ [-Wunused-variable]
 1257 |               vnp = NULL;
      |               ^~~
salfiles.c: In function ‘ReadLocalAlign’:
salfiles.c:1444:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1444:22: note: did you mean to dereference the pointer?
 1444 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1446:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1446 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1446:19: note: did you mean to dereference the pointer?
 1446 |               if (tmp!='\0')
      |                   ^
salfiles.c:1455:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1455:22: note: did you mean to dereference the pointer?
 1455 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1457:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1457 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1457:19: note: did you mean to dereference the pointer?
 1457 |               if (tmp!='\0')
      |                   ^
salfiles.c:1536:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1536:22: note: did you mean to dereference the pointer?
 1536 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1538:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1538 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1538:19: note: did you mean to dereference the pointer?
 1538 |               if (tmp!='\0')
      |                   ^
salfiles.c:1547:25: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                         ^~
salfiles.c:1547:22: note: did you mean to dereference the pointer?
 1547 |               while (tmp!='\0' && !isdigit (*tmp))
      |                      ^
salfiles.c:1549:22: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 1549 |               if (tmp!='\0')
      |                      ^~
salfiles.c:1549:19: note: did you mean to dereference the pointer?
 1549 |               if (tmp!='\0')
      |                   ^
salfiles.c:1370:14: warning: variable ‘tmp1’ set but not used [-Wunused-but-set-variable]
 1370 |              tmp1;
      |              ^~~~
salfiles.c: In function ‘ImportFromFile’:
salfiles.c:2072:20: warning: unused variable ‘sep’ [-Wunused-variable]
 2072 |   SeqEntryPtr      sep = NULL;
      |                    ^~~
salfiles.c:2071:20: warning: unused variable ‘sap’ [-Wunused-variable]
 2071 |   SeqAnnotPtr      sap = NULL;
      |                    ^~~
salfiles.c: In function ‘FindSeqEntryForSeqIdCallback’:
salfiles.c:2672:12: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2672 |            if (SeqIdForSameBioseq(cip->sip, sip))
      |            ^~
salfiles.c:2674:15: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2674 |               cip->bsp = bsp;
      |               ^~~
salfiles.c: In function ‘sesp_to_pept’:
salfiles.c:2713:18: warning: unused variable ‘bufferPtr’ [-Wunused-variable]
 2713 |                  bufferPtr = NULL;
      |                  ^~~~~~~~~
salfiles.c: In function ‘SaveFeatProc’:
salfiles.c:3387:22: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 3387 |   Int2               handled;
      |                      ^~~~~~~
salfiles.c: In function ‘CCReadAnythingLoop’:
salfiles.c:3685:16: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 3685 |   Uint2        entityID;
      |                ^~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salfiles.c:48:
salfiles.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
salfiles.c:501:19: warning: ‘get_lens_fromseqalign’ defined but not used [-Wunused-function]
  501 | static ValNodePtr get_lens_fromseqalign (SeqAlignPtr salp)
      |                   ^~~~~~~~~~~~~~~~~~~~~
salfiles.c: In function ‘CCDownloadProc’:
salfiles.c:2218:9: warning: ‘new_sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2218 |   vnp = SeqEntryToSeqLoc (sep, &n, adp->mol_type);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salfiles.c:2286:15: note: ‘new_sep’ was declared here
 2286 |   SeqEntryPtr new_sep;
      |               ^~~~~~~
salfiles.c: In function ‘NewFastaRead.constprop’:
salfiles.c:460:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  460 |   if (sip!=NULL)
      |      ^
salfiles.c: In function ‘GapFastaRead’:
salfiles.c:654:16: warning: ‘seqstr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  654 |                seqstr;
      |                ^~~~~~
salfiles.c:724:15: warning: ‘startp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  724 |            if (!startp) {
      |               ^
salfiles.c:660:16: note: ‘startp’ was declared here
  660 |   Boolean      startp;
      |                ^~~~~~
salfiles.c: In function ‘ReadLocalAlignment’:
salfiles.c:1287:3: warning: ‘seqvnp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1287 |   ValNodeFree (seqvnp);
      |   ^~~~~~~~~~~~~~~~~~~~
salfiles.c:1113:19: note: ‘seqvnp’ was declared here
 1113 |   ValNodePtr vnp, seqvnp;
      |                   ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/saledit.h:48,
                 from salpanel.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salpanel.c: In function ‘go_to_next_to_draw’:
salpanel.c:331:17: warning: statement with no effect [-Wunused-value]
  331 |                 offsettmp;
      |                 ^~~~~~~~~
salpanel.c: In function ‘next_to_draw’:
salpanel.c:471:20: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  471 |                 if ( curstr != NULL )
      |                    ^
salpanel.c: In function ‘AssociatePropagatedSubloc’:
salpanel.c:3131:16: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 3131 |   ValNodePtr   vnp;
      |                ^~~
salpanel.c: In function ‘FeaturePropagateForm’:
salpanel.c:4674:15: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 4674 |   PrompT      ppt;
      |               ^~~
salpanel.c:4669:15: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 4669 |   ButtoN      b;
      |               ^
salpanel.c: In function ‘OkToContinueWithFeatureApply’:
salpanel.c:6103:14: warning: unused variable ‘num_missing’ [-Wunused-variable]
 6103 |   Int4       num_missing = 0, seq_num, start_num;
      |              ^~~~~~~~~~~
salpanel.c: In function ‘DoApplyFeatureToAlignment’:
salpanel.c:6219:31: warning: unused variable ‘found_null’ [-Wunused-variable]
 6219 |   Boolean                     found_null = FALSE;
      |                               ^~~~~~~~~~
salpanel.c: In function ‘ApplyFeatureToAlignment’:
salpanel.c:6421:31: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 6421 |   ButtoN                      b;
      |                               ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salpanel.c:45:
salpanel.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salpanel.c:52:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salpanel.c:5059:13: warning: ‘BatchApplyFeatureDetailsMessage’ defined but not used [-Wunused-function]
 5059 | static void BatchApplyFeatureDetailsMessage (DialoG d, Int2 mssg)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salpanel.c:224:13: warning: ‘get_client_rectxy’ defined but not used [-Wunused-function]
  224 | static void get_client_rectxy (PaneL p, RectPtr prc, Int2 x, Int2 y)
      |             ^~~~~~~~~~~~~~~~~
salpanel.c:113:14: warning: ‘leftOvalFillSym’ defined but not used [-Wunused-variable]
  113 | static Uint1 leftOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~
salpanel.c:110:14: warning: ‘rightOvalFillSym’ defined but not used [-Wunused-variable]
  110 | static Uint1 rightOvalFillSym [] = {
      |              ^~~~~~~~~~~~~~~~
salpanel.c:107:14: warning: ‘leftOvalSym’ defined but not used [-Wunused-variable]
  107 | static Uint1 leftOvalSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:104:14: warning: ‘rightOvalSym’ defined but not used [-Wunused-variable]
  104 | static Uint1 rightOvalSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:101:14: warning: ‘downTriFillSym’ defined but not used [-Wunused-variable]
  101 | static Uint1 downTriFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:98:14: warning: ‘upTriFillSym’ defined but not used [-Wunused-variable]
   98 | static Uint1 upTriFillSym [] = {
      |              ^~~~~~~~~~~~
salpanel.c:89:14: warning: ‘ovalFillSym’ defined but not used [-Wunused-variable]
   89 | static Uint1 ovalFillSym [] = {
      |              ^~~~~~~~~~~
salpanel.c:86:14: warning: ‘diamondFillSym’ defined but not used [-Wunused-variable]
   86 | static Uint1 diamondFillSym [] = {
      |              ^~~~~~~~~~~~~~
salpanel.c:80:14: warning: ‘downTriSym’ defined but not used [-Wunused-variable]
   80 | static Uint1 downTriSym [] = {
      |              ^~~~~~~~~~
salpanel.c:77:14: warning: ‘upTriSym’ defined but not used [-Wunused-variable]
   77 | static Uint1 upTriSym [] = {
      |              ^~~~~~~~
salpanel.c:68:14: warning: ‘ovalSym’ defined but not used [-Wunused-variable]
   68 | static Uint1 ovalSym [] = {
      |              ^~~~~~~
salpanel.c:65:14: warning: ‘diamondSym’ defined but not used [-Wunused-variable]
   65 | static Uint1 diamondSym [] = {
      |              ^~~~~~~~~~
salpanel.c: In function ‘draw_feat.isra.0.part.0’:
salpanel.c:1939:17: warning: ‘col1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1939 |   Int4          col1;
      |                 ^~~~
salpanel.c: In function ‘on_draw’:
salpanel.c:2527:23: warning: ‘draw_diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2527 |                       draw_seq (adp, curssp, from_inseq, drw_width, ptlh, curstr, draw_diff, masterstr, TRUE, itemsubtype, FALSE);
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salparam.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salparam.c: In function ‘mergelst’:
salparam.c:1325:20: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1325 |   Boolean          val;
      |                    ^~~
salparam.c: In function ‘unmergelst’:
salparam.c:1340:20: warning: variable ‘dbdp’ set but not used [-Wunused-but-set-variable]
 1340 |   DialogBoxDataPtr dbdp;
      |                    ^~~~
salparam.c: In function ‘FormulaDialog’:
salparam.c:1398:36: warning: variable ‘b5’ set but not used [-Wunused-but-set-variable]
 1398 |   ButtoN           b1, b2, b3, b4, b5;
      |                                    ^~
salparam.c: In function ‘JK_NTPattern2Ex’:
salparam.c:1596:19: warning: variable ‘debug_str’ set but not used [-Wunused-but-set-variable]
 1596 |   CharPtr         debug_str;
      |                   ^~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1936:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1936 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘DotPlotDialog’:
salparam.c:1973:20: warning: variable ‘bt1’ set but not used [-Wunused-but-set-variable]
 1973 |   ButtoN           bt1, bt2;
      |                    ^~~
salparam.c: In function ‘DotPlotItem’:
salparam.c:2004:22: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 2004 |   Int2               status;
      |                      ^~~~~~
salparam.c: In function ‘SelectSeqFunc’:
salparam.c:2308:20: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 2308 |   CharPtr          str;
      |                    ^~~
salparam.c: In function ‘HighlightSelectionFunc’:
salparam.c:2344:22: warning: variable ‘wdp’ set but not used [-Wunused-but-set-variable]
 2344 |   SeqEditViewFormPtr wdp;
      |                      ^~~
salparam.c: In function ‘PropagateFeatureProc’:
salparam.c:2623:25: warning: variable ‘iID’ set but not used [-Wunused-but-set-variable]
 2623 |   Uint2            eID, iID,
      |                         ^~~
salparam.c:2614:20: warning: variable ‘salp’ set but not used [-Wunused-but-set-variable]
 2614 |   SeqAlignPtr      salp;
      |                    ^~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salparam.c:49:
salparam.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from salparam.c:58:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salparam.c: In function ‘FileInProc’:
salparam.c:782:10: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  782 |          fscanf(fp, "%d %ld", &n, &lens);
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘DotPlotBtn’:
salparam.c:1951:13: warning: ‘sep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1951 |         bsp = (BioseqPtr) sep->data.ptrvalue;
      |         ~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘SalsaExportDialog’:
salparam.c:2258:19: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 2258 |   sprintf (str2, "%ld", (long) adp->int4value);
      |                   ^~~
salparam.c:2258:18: note: directive argument in the range [-2147483648, 2147483647]
 2258 |   sprintf (str2, "%ld", (long) adp->int4value);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2261:19: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size 10 [-Wformat-overflow=]
 2261 |   sprintf (str2, "%ld", (long) adp->int4value2);
      |                   ^~~
salparam.c:2261:18: note: directive argument in the range [-2147483648, 2147483647]
 2261 |   sprintf (str2, "%ld", (long) adp->int4value2);
      |                  ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 12 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c: In function ‘PropagateFeatDialog’:
salparam.c:2964:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                                ^~~
salparam.c:2964:24: note: directive argument in the range [-2147483647, 2147483647]
 2964 |         sprintf (str2, " (%ld..%ld)", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 28 bytes into a destination of size 24
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
salparam.c:2962:32: warning: ‘%ld’ directive writing between 1 and 11 bytes into a region of size between 9 and 19 [-Wformat-overflow=]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                                ^~~
salparam.c:2962:24: note: directive argument in the range [-2147483647, 2147483647]
 2962 |         sprintf (str2, " (%ld..%ld) minus strand", (long)start, (long)stop);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from ../include/salparam.h:48,
                 from salparam.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 21 and 41 bytes into a destination of size 24
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salsa.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salsa.c: In function ‘SelectSubsProc’:
salsa.c:2140:23: warning: variable ‘svpp’ set but not used [-Wunused-but-set-variable]
 2140 |   SeqEditViewProcsPtr svpp=NULL;
      |                       ^~~~
salsa.c: In function ‘SetSeqInfo’:
salsa.c:3195:17: warning: unused variable ‘vnp’ [-Wunused-variable]
 3195 |   ValNodePtr    vnp = NULL;
      |                 ^~~
salsa.c: In function ‘SetupAlignDataSap’:
salsa.c:3410:16: warning: variable ‘entityID_sap’ set but not used [-Wunused-but-set-variable]
 3410 |   Uint2        entityID_sap;
      |                ^~~~~~~~~~~~
salsa.c: In function ‘get_bestpos_formerge’:
salsa.c:4304:17: warning: variable ‘insert_after’ set but not used [-Wunused-but-set-variable]
 4304 |                 insert_after=FALSE;
      |                 ^~~~~~~~~~~~
salsa.c:4303:17: warning: variable ‘insert_before’ set but not used [-Wunused-but-set-variable]
 4303 |   Boolean       insert_before=FALSE,
      |                 ^~~~~~~~~~~~~
salsa.c: In function ‘CreateSeqAlignViewForm’:
salsa.c:4689:22: warning: variable ‘mergebtn’ set but not used [-Wunused-but-set-variable]
 4689 |   ButtoN             mergebtn;
      |                      ^~~~~~~~
salsa.c: In function ‘AlgEditFunc’:
salsa.c:4976:23: warning: unused variable ‘wdp’ [-Wunused-variable]
 4976 |   SeqEditViewFormPtr  wdp = NULL;
      |                       ^~~
salsa.c:4974:23: warning: unused variable ‘w’ [-Wunused-variable]
 4974 |   WindoW              w = NULL;
      |                       ^
salsa.c: In function ‘OldAlignmentEditor’:
salsa.c:5106:16: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 5106 |   Int2         rval;
      |                ^~~~
salsa.c: In function ‘LaunchAnnotAlignEditor’:
salsa.c:5293:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5293 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditor’:
salsa.c:5310:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5310 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignViewer’:
salsa.c:5327:20: warning: variable ‘handled’ set but not used [-Wunused-but-set-variable]
 5327 |   Int2             handled;
      |                    ^~~~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop’:
salsa.c:5342:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5342 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘LaunchAlignEditorFromDesktop2’:
salsa.c:5359:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 5359 |   OMProcControlPtr ompcp;
      |                    ^~~~~
salsa.c: In function ‘InsertSeqProc’:
salsa.c:5538:17: warning: variable ‘cnclbt’ set but not used [-Wunused-but-set-variable]
 5538 |   ButtoN insbt, cnclbt;
      |                 ^~~~~~
salsa.c:5536:10: warning: variable ‘insprt’ set but not used [-Wunused-but-set-variable]
 5536 |   PrompT insprt;
      |          ^~~~~~
salsa.c: In function ‘SeqAlignBestHit’:
salsa.c:5605:22: warning: variable ‘last’ set but not used [-Wunused-but-set-variable]
 5605 |    Int4              last;
      |                      ^~~~
salsa.c: In function ‘SeqAlignStartUpdate’:
salsa.c:5791:22: warning: variable ‘k’ set but not used [-Wunused-but-set-variable]
 5791 |   Int2        index, k, j;
      |                      ^
salsa.c:5790:15: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5790 |               start;
      |               ^~~~~
salsa.c:5789:15: warning: variable ‘len_sum’ set but not used [-Wunused-but-set-variable]
 5789 |   Int4        len_sum,
      |               ^~~~~~~
salsa.c:5786:15: warning: variable ‘lenp’ set but not used [-Wunused-but-set-variable]
 5786 |   Int4Ptr     lenp,
      |               ^~~~
salsa.c:5785:15: warning: variable ‘pre’ set but not used [-Wunused-but-set-variable]
 5785 |   SeqIdPtr    pre, sip, next;
      |               ^~~
salsa.c: In function ‘CCNormalizeSeqAlignId’:
salsa.c:6746:23: warning: unused variable ‘gi’ [-Wunused-variable]
 6746 |   Int4                gi = 0;
      |                       ^~
salsa.c:6745:17: warning: unused variable ‘missing_fmt’ [-Wunused-variable]
 6745 |   CharPtr       missing_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\n";
      |                 ^~~~~~~~~~~
salsa.c:6744:17: warning: unused variable ‘missing_cont_fmt’ [-Wunused-variable]
 6744 |   CharPtr       missing_cont_fmt = "The alignment contains %s that can not be found in GenBank.\nPlease check the accession number.\nContinue anyway?\n";
      |                 ^~~~~~~~~~~~~~~~
salsa.c: In function ‘ValidateSeqAlignandACCEx’:
salsa.c:7106:16: warning: variable ‘ans’ set but not used [-Wunused-but-set-variable]
 7106 |   MsgAnswer    ans;
      |                ^~~
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/salpanel.h:53,
                 from salsa.c:48:
salsa.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salsa.c:68:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salsa.c:87:13: warning: ‘InsertSequenceDlg’ declared ‘static’ but never defined [-Wunused-function]
   87 | static void InsertSequenceDlg (ButtoN b);
      |             ^~~~~~~~~~~~~~~~~
salsa.c:5973:13: warning: ‘SWPrintFarpointerAln’ defined but not used [-Wunused-function]
 5973 | static void SWPrintFarpointerAln(SeqAlignPtr sap, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~
salsa.c:2360:13: warning: ‘MakeCdRgnrProc’ defined but not used [-Wunused-function]
 2360 | static void MakeCdRgnrProc (IteM i) {
      |             ^~~~~~~~~~~~~~
salsa.c:2356:13: warning: ‘MakeCdRgnProc’ defined but not used [-Wunused-function]
 2356 | static void MakeCdRgnProc (IteM i) {
      |             ^~~~~~~~~~~~~
salsa.c:1760:13: warning: ‘AcceptCloseWindowButton’ defined but not used [-Wunused-function]
 1760 | static void AcceptCloseWindowButton (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
In file included from salsa.c:52:
../include/salprop.h:50:16: warning: ‘GBFeat’ defined but not used [-Wunused-variable]
   50 | static CharPtr GBFeat[number_GBFeat] = {
      |                ^~~~~~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportFASTAForUnselectedUpdates’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6350:23: note: ‘fp’ was declared here
 6350 |   FILE               *fp;
      |                       ^~
In file included from ../include/ncbi.h:65,
                 from ../include/salsa.h:48,
                 from salsa.c:43:
salsa.c: In function ‘ExportBadAlignments’:
../include/ncbifile.h:113:19: warning: ‘fp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  113 | #define FileClose Nlm_FileClose
      |                   ^~~~~~~~~~~~~
salsa.c:6318:23: note: ‘fp’ was declared here
 6318 |   FILE               *fp;
      |                       ^~
salsa.c: In function ‘SeqAlignBestHit.isra.0’:
salsa.c:5746:23: warning: ‘nctr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c:5748:24: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5748 |          *nonly = -(beg+end);
      |                    ~~~~^~~~~
salsa.c:5746:23: warning: ‘beg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5746 |          *nonly = nctr+beg+end;
      |                   ~~~~^~~~
salsa.c: In function ‘SkipThisWindowProc’:
salsa.c:4574:22: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4574 |   SeqAlignPtr        salp;
      |                      ^~~~
salsa.c: In function ‘BioseqEditMsgFunc’:
salsa.c:912:51: warning: ‘anp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  912 |         ssp = SelStructNew (anp->seq_entityID, anp->bsp_itemID, OBJ_BIOSEQ, from, to, anp->sip, Seq_strand_plus, FALSE);
      |                                                ~~~^~~~~~~~~~~~
salsa.c:890:20: note: ‘anp’ was declared here
  890 |   AlignNodePtr     anp;
      |                    ^~~
salsa.c: In function ‘DeleteProc’:
salsa.c:1955:165: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1955 |               if ((adp->sap1_original && (FindSeqIdinSeqAlign ((SeqAlignPtr)adp->sap1_original->data, SeqLocId(slp))) > 0) || (FindSeqIdinSeqAlign ((SeqAlignPtr)sap->data, SeqLocId(slp))) > 0)
      |                                                                                                                                                                  ~~~^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqfltr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqfltr.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqfltr.c: In function ‘FilterSeq’:
seqfltr.c:259:21: warning: ‘fptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |         sgp->values = (Pointer) fptr;
      |         ~~~~~~~~~~~~^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgraph.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgraph.c: In function ‘EndPointDialogToEndPointValNode’:
seqgraph.c:140:10: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return (Pointer) eplist;
      |          ^~~~~~~~~~~~~~~~
seqgraph.c: In function ‘SeqLocGraphViewProc’:
seqgraph.c:1136:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1136 |   while (eplist != NULL)
      |         ^
seqgraph.c: In function ‘CutOffProc’:
seqgraph.c:911:11: warning: ‘fval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  911 |       val = fval/2;
      |       ~~~~^~~~~~~~
seqgraph.c:841:14: note: ‘fval’ was declared here
  841 |   FloatHi    fval;
      |              ^~~~
seqgraph.c:1018:9: warning: ‘eplist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1018 |   while (eplist != NULL)
      |         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqgrphx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqgrphx.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqgrphx.c:301:13: warning: ‘CleanupGCFilterForm’ defined but not used [-Wunused-function]
  301 | static void CleanupGCFilterForm  (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~
seqgrphx.c:152:25: warning: ‘FilterMsgFunc’ defined but not used [-Wunused-function]
  152 | static Int2 LIBCALLBACK FilterMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
seqgrphx.c:28:25: warning: ‘MatrixMsgFunc’ defined but not used [-Wunused-function]
   28 | static Int2 LIBCALLBACK MatrixMsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqmtrx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqmtrx.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqmtrx.c:387:20: warning: ‘MatrixSearch’ defined but not used [-Wunused-function]
  387 | static SeqGraphPtr MatrixSearch (BioseqPtr bsp, Int2 matrixtype)
      |                    ^~~~~~~~~~~~
seqmtrx.c: In function ‘MatrixSeq’:
seqmtrx.c:304:17: warning: ‘matval’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  304 |         *fptr = (FloatHi) matval;
      |                 ^~~~~~~~~~~~~~~~
seqmtrx.c:284:14: note: ‘matval’ was declared here
  284 |   Int4       matval, cutoff = 0;
      |              ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpcc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from seqpcc.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpcc.c: In function ‘PCCProc’:
seqpcc.c:229:14: warning: ‘pbsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |   if ((spp = SeqPortNew (pbsp, start, end, 0, Seq_code_iupacaa)) != NULL)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqanal.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from seqanal.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aacomp.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from aacomp.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
aacomp.c:86:20: warning: ‘AACGraph’ defined but not used [-Wunused-function]
   86 | static SeqGraphPtr AACGraph (SeqPortPtr spp, Int4 start, Int4 end, Int4 window,
      |                    ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqscrl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from ../include/seqscrl.h:4,
                 from seqscrl.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF valdlg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vibforms.h:46,
                 from valdlg.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
valdlg.c: In function ‘ClickRulesDoc’:
valdlg.c:373:22: warning: unused variable ‘scroll_pos’ [-Wunused-variable]
  373 |   Int2               scroll_pos = 0;
      |                      ^~~~~~~~~~
valdlg.c:372:22: warning: unused variable ‘sb_vert’ [-Wunused-variable]
  372 |   BaR                sb_vert = NULL;
      |                      ^~~~~~~
valdlg.c: In function ‘UpdateRuleList’:
valdlg.c:479:26: warning: unused variable ‘last_cr’ [-Wunused-variable]
  479 |   CommentRulePtr new_cr, last_cr = NULL;
      |                          ^~~~~~~
valdlg.c: In function ‘SaveRuleChanges’:
valdlg.c:540:23: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
  540 |   CommentSetDlgPtr    dlg;
      |                       ^~~
valdlg.c: In function ‘LaunchCommentRulesEditor’:
valdlg.c:553:23: warning: unused variable ‘m’ [-Wunused-variable]
  553 |   MenU                m;
      |                       ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsm.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsm.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsm.c: In function ‘VSMDrawAbout’:
vsm.c:1436:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1436 |     if (vsmp->title != NULL)
      |     ^~
vsm.c:1438:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1438 |  if (vsmp->aboutinfo != NULL)
      |  ^~
vsm.c: In function ‘VSMAboutProc’:
vsm.c:1466:8: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 1466 |  PaneL p;
      |        ^
vsm.c: In function ‘VSeqMgrCreateMainWindow’:
vsm.c:1569:12: warning: variable ‘omp’ set but not used [-Wunused-but-set-variable]
 1569 |  ObjMgrPtr omp;
      |            ^~~
vsm.c: In function ‘VSeqMgrPopulateMain’:
vsm.c:1710:13: warning: variable ‘atp’ set but not used [-Wunused-but-set-variable]
 1710 |  AsnTypePtr atp;
      |             ^~~
vsm.c: In function ‘VSMGatherPictProc’:
vsm.c:2193:15: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 2193 |  BioseqSetPtr bssp;
      |               ^~~~
vsm.c:2188:30: warning: variable ‘bottom’ set but not used [-Wunused-but-set-variable]
 2188 |  Int4 top, lineheight, left, bottom, width, maxwidth;
      |                              ^~~~~~
vsm.c: In function ‘VSMAddPictureToEntity’:
vsm.c:2821:10: warning: variable ‘ptr’ set but not used [-Wunused-but-set-variable]
 2821 |  Pointer ptr;
      |          ^~~
vsm.c:2820:13: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2820 |  ValNodePtr vnp;
      |             ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmfile.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/vsmpriv.h:48,
                 from vsmfile.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmfile.c: In function ‘VSMGenericBinAsnOpen’:
vsmfile.c:259:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  259 |     ButtoN b;
      |            ^
vsmfile.c: In function ‘VSMGenericFastaSave’:
vsmfile.c:395:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  395 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMFastaProtSaveWithProduct’:
vsmfile.c:527:11: warning: variable ‘code’ set but not used [-Wunused-but-set-variable]
  527 |     Uint1 code;
      |           ^~~~
vsmfile.c: In function ‘VSMSaveSetsAsFiles’:
vsmfile.c:1368:20: warning: variable ‘ompcp’ set but not used [-Wunused-but-set-variable]
 1368 |   OMProcControlPtr ompcp;
      |                    ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vsmutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vsmutil.c: In function ‘GetDocPosForError’:
vsmutil.c:1743:18: warning: variable ‘val’ set but not used [-Wunused-but-set-variable]
 1743 |   Int2           val;
      |                  ^~~
At top level:
vsmutil.c:1628:16: warning: ‘MakeFieldReports’ defined but not used [-Wunused-function]
 1628 | static Boolean MakeFieldReports (ValNodePtr report_list, ValNodePtr field_list, FILE *fp)
      |                ^~~~~~~~~~~~~~~~
vsmutil.c:387:20: warning: ‘GetSeqDescGivenIDs’ defined but not used [-Wunused-function]
  387 | static SeqDescrPtr GetSeqDescGivenIDs (Uint2 entityID, Uint4 itemID, Uint2 itemtype)
      |                    ^~~~~~~~~~~~~~~~~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2255:5: note: within this loop
 2255 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2222:5: note: within this loop
 2222 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:23: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2296:5: note: within this loop
 2296 |     for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |     ^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~~~~~~~^~~
vsmutil.c:612:7: note: within this loop
  612 |       for (sev = SEV_NONE; sev <= SEV_MAX; sev++) {
      |       ^~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:27: warning: iteration 6 invokes undefined behavior [-Waggressive-loop-optimizations]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~~~~~^~~
vsmutil.c:2619:9: note: within this loop
 2619 |         for (i = SEV_NONE; i <= SEV_MAX; i++) {
      |         ^~~
vsmutil.c: In function ‘ContinueProc’:
vsmutil.c:2256:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2256 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘RevalidateProc’:
vsmutil.c:2223:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2223 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘SetVerbosityAndRepopulate’:
vsmutil.c:2297:19: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2297 |       vep->counts [i] = 0;
      |       ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘ClearValidateWindow’:
vsmutil.c:613:21: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
  613 |         vep->counts [sev] = 0;
      |         ~~~~~~~~~~~~^~~~~
vsmutil.c: In function ‘CreateValidateWindowExExEx’:
vsmutil.c:2620:23: warning: array subscript 6 is above array bounds of ‘Nlm_Int4[6]’ {aka ‘int[6]’} [-Warray-bounds]
 2620 |           vep->counts [i] = 0;
      |           ~~~~~~~~~~~~^~~
vsmutil.c: In function ‘ShowValidateDoc’:
vsmutil.c:2758:61: warning: ‘      REJECT: ’ directive writing 14 bytes into a region of size between 13 and 43 [-Wformat-overflow=]
 2758 |   sprintf (str, "INFO: %ld      WARNING: %ld      ERROR: %ld      REJECT: %ld",
      |                                                             ^~~~~~~~~~~~~~
vsmutil.c:2758:17: note: directive argument in the range [-2147483648, 2147483647]
 2758 |   sprintf (str, "INFO: %ld      WARNING: %ld      ERROR: %ld      REJECT: %ld",
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from vsmutil.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 53 and 93 bytes into a destination of size 80
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvgraph.c: In function ‘UDV_click_item’:
udvgraph.c:877:9: warning: unused variable ‘IsTransNeeded’ [-Wunused-variable]
  877 | Boolean IsTransNeeded=FALSE;
      |         ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_SendBSPSelectMsg’:
udvgraph.c:1230:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1230 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
udvgraph.c:1226:30: warning: variable ‘bsp_coord_old’ set but not used [-Wunused-but-set-variable]
 1226 | Int4        first_bsp_coord, bsp_coord_old,old_pos;
      |                              ^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_helixDNA’:
udvgraph.c:1827:15: warning: variable ‘cyChar_2’ set but not used [-Wunused-but-set-variable]
 1827 | Int2 cxChar_2,cyChar_2;
      |               ^~~~~~~~
udvgraph.c: In function ‘draw_logo’:
udvgraph.c:1940:38: warning: variable ‘cyGlobal’ set but not used [-Wunused-but-set-variable]
 1940 | Int2 pos,cxChar=7,cyChar=13,cxGlobal,cyGlobal;
      |                                      ^~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_minus’:
udvgraph.c:2337:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2337 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c:2332:5: warning: variable ‘numivals2’ set but not used [-Wunused-but-set-variable]
 2332 |     numivals2=0,
      |     ^~~~~~~~~
udvgraph.c: In function ‘UDV_draw_CDS_plus’:
udvgraph.c:2461:9: warning: variable ‘bGiForProductOk’ set but not used [-Wunused-but-set-variable]
 2461 | Boolean bGiForProductOk=FALSE;
      |         ^~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_draw_panel’:
udvgraph.c:4111:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 4111 |         if(vdp->vgp->MasterViewer == SAMVIEWDDV)
      |         ^~
udvgraph.c:4113:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 4113 |             Row = ViewMgr_GetRow(svpp, vdp->userkey);
      |             ^~~
udvgraph.c:4041:21: warning: unused variable ‘vnp_seqinfo’ [-Wunused-variable]
 4041 | ValNodePtr          vnp_seqinfo=NULL;
      |                     ^~~~~~~~~~~
udvgraph.c:4035:45: warning: variable ‘nLinesDraw’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                             ^~~~~~~~~~
udvgraph.c:4035:37: warning: variable ‘nTotRow’ set but not used [-Wunused-but-set-variable]
 4035 | Int4     decal_haut,from_row,to_row,nTotRow,nLinesDraw;
      |                                     ^~~~~~~
At top level:
udvgraph.c:3921:14: warning: ‘UDV_calc_decalRC’ defined but not used [-Wunused-function]
 3921 | static Int4  UDV_calc_decalRC(ValNodePtr ParaG,Int4 ScrollPos,
      |              ^~~~~~~~~~~~~~~~
udvgraph.c:3433:14: warning: ‘UDV_Draw_features_label’ defined but not used [-Wunused-function]
 3433 | static void  UDV_Draw_features_label(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:1298:13: warning: ‘UDV_AutoSelectAllSeq’ defined but not used [-Wunused-function]
 1298 | static void UDV_AutoSelectAllSeq(ViewerDialogDataPtr vdp,Boolean bSelect)
      |             ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:971:14: warning: ‘UDV_draw_horz_cursor’ defined but not used [-Wunused-function]
  971 | static void  UDV_draw_horz_cursor(UnDViewerGraphDataPtr GrData,
      |              ^~~~~~~~~~~~~~~~~~~~
udvgraph.c:948:13: warning: ‘UDV_draw_vert_cursor’ defined but not used [-Wunused-function]
  948 | static void UDV_draw_vert_cursor(RecT rcClip,PoinT pos)
      |             ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from udvgraph.c:180:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
udvgraph.c: In function ‘UDV_GetCurrentDispRange’:
udvgraph.c:638:15: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  638 |  *from_bsp=pgp->StartLetter;
      |            ~~~^~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_select_feature’:
udvgraph.c:813:25: warning: ‘ [from ’ directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
  813 |        sprintf(szTmp,"%s [from %d to %d]. ",
      |                         ^~~~~~~
udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647]
  813 |        sprintf(szTmp,"%s [from %d to %d]. ",
      |                      ^~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:813:22: note: directive argument in the range [-2147483647, 2147483647]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 17 and 291 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:808:25: warning: ‘ [from ’ directive writing 7 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
  808 |        sprintf(szTmp,"%s [from %d to %d in %d segments]. ",
      |                         ^~~~~~~
udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647]
  808 |        sprintf(szTmp,"%s [from %d to %d in %d segments]. ",
      |                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c:808:22: note: directive argument in the range [-2147483647, 2147483647]
udvgraph.c:808:22: note: directive argument in the range [2, 32767]
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvgraph.c:177:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 31 and 309 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
udvgraph.c: In function ‘UDV_Draw_features’:
udvgraph.c:3203:58: warning: ‘idx6’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3203:38: warning: ‘idx5’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3203 |     UDV_draw_thin_line((Int2)(start_x+idx5),(Int2)(stop_x+idx6),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3196:47: warning: ‘idx4’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3196 |     stop2=_min_(pgp->StopLetter,context->ivals[idx4]);
      |                                               ^
udvgraph.c:3189:58: warning: ‘idx3’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                                                   ~~~~~~~^~~~~~
udvgraph.c:3189:38: warning: ‘idx2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3189 |     UDV_draw_thin_line((Int2)(start_x+idx2),(Int2)(stop_x+idx3),y,
      |                              ~~~~~~~~^~~~~~
udvgraph.c:3182:49: warning: ‘idx1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3182 |     start2=_max_(pgp->StartLetter,context->ivals[idx1]);
      |                                                 ^
In file included from ../include/udviewer.h:225,
                 from udvgraph.c:177:
../include/udvdef.h:187:40: warning: ‘stop_x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  187 | #define _max_(a,b)        ((a)>=(b)?(a):(b))
      |                                        ^
udvgraph.c:2803:21: note: ‘stop_x2’ was declared here
 2803 | Int2 start_x,stop_x,stop_x2,  /*id. but in pixels*/
      |                     ^~~~~~~
udvgraph.c: In function ‘UDV_ClickProc’:
udvgraph.c:1461:8: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1461 |        UDV_SelectFeatInFeatDlg(vmp,entityID,itemID);
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvopen.c:101:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvopen.c: In function ‘UDV_FileOpen’:
udvopen.c:875:16: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |                ^~
udvopen.c:875:11: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  875 | ButtoN    b,b1,b2;
      |           ^
udvopen.c: In function ‘UDV_CreateListBioseqDlg’:
udvopen.c:1180:9: warning: the address of ‘szName’ will always evaluate as ‘true’ [-Waddress]
 1180 |     if (szName){
      |         ^~~~~~
udvopen.c: In function ‘UDV_FOpenCancelProc’:
udvopen.c:792:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  792 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
udvopen.c: In function ‘UDV_analyze_SEP_for_open’:
udvopen.c:325:15: warning: ‘entityID’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  325 |  vmp->entityID=entityID;
      |  ~~~~~~~~~~~~~^~~~~~~~~
udvopen.c:327:14: warning: ‘dataptr’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  327 |  vmp->dataptr=dataptr;
      |  ~~~~~~~~~~~~^~~~~~~~
udvopen.c: In function ‘UDV_FOpenAcceptProc’:
udvopen.c:855:23: warning: ‘vmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  855 |     UDV_set_PullMenus(&vmp->MainMenu,TRUE);
      |                       ^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF udvpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvpanel.c:197:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvpanel.c: In function ‘UDV_GotoBtnProc’:
udvpanel.c:2080:22: warning: variable ‘old_ivalue’ set but not used [-Wunused-but-set-variable]
 2080 | Int4          iValue,old_ivalue,line_num,from_bsp,to_bsp,
      |                      ^~~~~~~~~~
udvpanel.c:2079:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2079 | ValNodePtr    vnp;
      |               ^~~
udvpanel.c: In function ‘CreateMainControls’:
udvpanel.c:2165:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 2165 | Int2   cxChar,cyChar,Margins;
      |        ^~~~~~
udvpanel.c: In function ‘UDV_SearchFeatForKey’:
udvpanel.c:3478:14: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3478 | ButtoN    b1,b2;
      |              ^~
At top level:
udvpanel.c:2773:28: warning: ‘FeaturesListBoxScan’ defined but not used [-Wunused-function]
 2773 | static Boolean LIBCALLBACK FeaturesListBoxScan (SeqFeatPtr sfp,
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/udviewer.h:220,
                 from udvpanel.c:197:
udvpanel.c: In function ‘InitFeaturesListDlg’:
../include/vibdefns.h:342:19: warning: ‘pop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  342 | #define PopupItem Nlm_PopupItem
      |                   ^~~~~~~~~~~~~
udvpanel.c:3194:7: note: ‘pop’ was declared here
 3194 | PopuP pop;
      |       ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotvibrant.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/dotviewer.h:15,
                 from dotvibrant.c:84:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotvibrant.c: In function ‘DOT_DisplayHits’:
dotvibrant.c:564:18: warning: variable ‘ycomp’ set but not used [-Wunused-but-set-variable]
  564 |   Int4           ycomp, xcomp;
      |                  ^~~~~
dotvibrant.c: In function ‘DOT_VscrlProc’:
dotvibrant.c:918:16: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  918 |   Int2         visLines, vmargin, hmargin;
      |                ^~~~~~~~
dotvibrant.c: In function ‘DOT_HscrlProc’:
dotvibrant.c:972:20: warning: variable ‘visLines’ set but not used [-Wunused-but-set-variable]
  972 |   Int2         dx, visLines, offset, hmargin, vmargin;
      |                    ^~~~~~~~
dotvibrant.c: In function ‘DOT_VCrossHairs’:
dotvibrant.c:1402:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1402 |   Int4   cursor_size =15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_HCrossHairs’:
dotvibrant.c:1427:9: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1427 |   Int4  cursor_size = 15;
      |         ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_MoveCrossHairs’:
dotvibrant.c:1453:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 1453 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c:1452:10: warning: unused variable ‘cursor_size’ [-Wunused-variable]
 1452 |   Int4   cursor_size = 15;
      |          ^~~~~~~~~~~
dotvibrant.c: In function ‘DOT_DrawXAxis’:
dotvibrant.c:1532:38: warning: unused variable ‘title’ [-Wunused-variable]
 1532 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c: In function ‘DOT_DrawYAxis’:
dotvibrant.c:1642:38: warning: unused variable ‘title’ [-Wunused-variable]
 1642 |   Char         scale_buf[15] = {""}, title[50]={""}; /*scale value*/
      |                                      ^~~~~
dotvibrant.c:1641:55: warning: variable ‘Fh_4’ set but not used [-Wunused-but-set-variable]
 1641 |   Int4         pos, ylen, x, y, scale_pos, i, j, Fh_2,Fh_4;
      |                                                       ^~~~
dotvibrant.c: In function ‘DOT_SVDisplayDiags’:
dotvibrant.c:1770:28: warning: variable ‘aln_diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                            ^~~~~~~~
dotvibrant.c:1770:22: warning: variable ‘diag’ set but not used [-Wunused-but-set-variable]
 1770 |   Int4               diag, aln_diag;
      |                      ^~~~
dotvibrant.c:1766:22: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 1766 |   Int4               width, height;
      |                      ^~~~~
dotvibrant.c:1765:31: warning: variable ‘p_HFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                               ^~~~~~~
dotvibrant.c:1765:22: warning: variable ‘p_VFrom’ set but not used [-Wunused-but-set-variable]
 1765 |   Int4               p_VFrom, p_HFrom;
      |                      ^~~~~~~
dotvibrant.c:1762:28: warning: unused variable ‘cutoff’ [-Wunused-variable]
 1762 |   Int4               stop, cutoff=0, q_start, s_start, length;
      |                            ^~~~~~
dotvibrant.c:1760:34: warning: variable ‘seg3’ set but not used [-Wunused-but-set-variable]
 1760 |   SegmenT            seg1, seg2, seg3, seg4;
      |                                  ^~~~
dotvibrant.c: In function ‘DOT_FillNewSeqBufs’:
dotvibrant.c:2197:19: warning: unused variable ‘alp’ [-Wunused-variable]
 2197 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c: In function ‘DOT_InitCInfo’:
dotvibrant.c:2258:14: warning: unused variable ‘colBuf’ [-Wunused-variable]
 2258 |   Char       colBuf[12]={""};
      |              ^~~~~~
dotvibrant.c: In function ‘DOT_SVDisplaySequence’:
dotvibrant.c:2379:16: warning: variable ‘matrix’ set but not used [-Wunused-but-set-variable]
 2379 |   Int4Ptr PNTR matrix;
      |                ^~~~~~
dotvibrant.c:2367:14: warning: variable ‘vis_2’ set but not used [-Wunused-but-set-variable]
 2367 |   Int4       vis_2, buf_len;
      |              ^~~~~
dotvibrant.c:2364:14: warning: unused variable ‘prot_threshold’ [-Wunused-variable]
 2364 |   Int4       prot_threshold=0, bloc_cntr;
      |              ^~~~~~~~~~~~~~
dotvibrant.c:2350:24: warning: variable ‘mip2’ set but not used [-Wunused-but-set-variable]
 2350 |   DOTMainDataPtr mip1, mip2;
      |                        ^~~~
dotvibrant.c: In function ‘DOT_SVClickProc’:
dotvibrant.c:2807:17: warning: unused variable ‘handled’ [-Wunused-variable]
 2807 |   Int2          handled=0;
      |                 ^~~~~~~
dotvibrant.c: In function ‘DOT_ResizeFeatWindow’:
dotvibrant.c:3016:63: warning: variable ‘SubjectHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                               ^~~~~~~~~~~~~
dotvibrant.c:3016:51: warning: variable ‘QueryHeight’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                                   ^~~~~~~~~~~
dotvibrant.c:3016:37: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 3016 |   Int2     height,width,vsbWidth,in,gap,hsbHeight,QueryHeight,SubjectHeight, halfw;
      |                                     ^~~
dotvibrant.c: In function ‘DOT_ResizeSequenceWindow’:
dotvibrant.c:3098:25: warning: variable ‘is_visible2’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |                         ^~~~~~~~~~~
dotvibrant.c:3098:12: warning: variable ‘is_visible1’ set but not used [-Wunused-but-set-variable]
 3098 |   Boolean  is_visible1, is_visible2;
      |            ^~~~~~~~~~~
dotvibrant.c:3095:51: warning: variable ‘V1Height’ set but not used [-Wunused-but-set-variable]
 3095 |   Int2     height,width,gap,vsbWidth,in,hsbHeight,V1Height,V2Height, goHeight;
      |                                                   ^~~~~~~~
dotvibrant.c: In function ‘DOT_HideFeatDlg’:
dotvibrant.c:3745:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3745 |     ButtoN b;
      |            ^
dotvibrant.c: In function ‘DOT_SVBuildDiagViewer’:
dotvibrant.c:4031:18: warning: variable ‘mip’ set but not used [-Wunused-but-set-variable]
 4031 |   DOTMainDataPtr mip;
      |                  ^~~
dotvibrant.c:4029:28: warning: unused variable ‘str2’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |                            ^~~~
dotvibrant.c:4029:13: warning: unused variable ‘str1’ [-Wunused-variable]
 4029 |   Char      str1[41]={""}, str2[41]={""};
      |             ^~~~
dotvibrant.c:4022:18: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |                  ^~~
dotvibrant.c:4022:13: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 4022 |   PrompT    pr1, pr2;
      |             ^~~
dotvibrant.c: In function ‘DOT_UpdateDataRects’:
dotvibrant.c:4166:19: warning: variable ‘dy’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |                   ^~
dotvibrant.c:4166:15: warning: variable ‘dx’ set but not used [-Wunused-but-set-variable]
 4166 |   Int4  comp, dx, dy, xstart, ystart;
      |               ^~
dotvibrant.c: In function ‘DOT_MsgFunc’:
dotvibrant.c:4215:17: warning: variable ‘vdp2’ set but not used [-Wunused-but-set-variable]
 4215 |   DOTVibDataPtr vdp2 = NULL;
      |                 ^~~~
dotvibrant.c: In function ‘DOT_ReleaseProc’:
dotvibrant.c:4373:32: warning: unused variable ‘yaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |                                ^~~~~~~~~~
dotvibrant.c:4373:15: warning: unused variable ‘xaxis_incr’ [-Wunused-variable]
 4373 |   Boolean     xaxis_incr=TRUE, yaxis_incr=TRUE;
      |               ^~~~~~~~~~
dotvibrant.c:4371:19: warning: variable ‘alp’ set but not used [-Wunused-but-set-variable]
 4371 |   DOTAlignInfoPtr alp=NULL;
      |                   ^~~
dotvibrant.c:4370:18: warning: variable ‘mip1’ set but not used [-Wunused-but-set-variable]
 4370 |   DOTMainDataPtr mip1=NULL;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_StartDOTPLOT’:
dotvibrant.c:4891:23: warning: variable ‘vdp’ set but not used [-Wunused-but-set-variable]
 4891 |   DOTVibDataPtr       vdp;
      |                       ^~~
dotvibrant.c: In function ‘DOT_DoZoom’:
dotvibrant.c:5106:18: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 5106 |   DOTSelDataPtr  data;
      |                  ^~~~
dotvibrant.c: In function ‘DOT_ZoomProc’:
dotvibrant.c:5204:23: warning: variable ‘temport’ set but not used [-Wunused-but-set-variable]
 5204 |   WindoW              temport, w;
      |                       ^~~~~~~
dotvibrant.c: In function ‘AlnMgr2GetNextLine’:
dotvibrant.c:5315:3: warning: value computed is not used [-Wunused-value]
 5315 |   *n++;
      |   ^~~~
dotvibrant.c: In function ‘DOT_GetAlign’:
dotvibrant.c:5332:44: warning: variable ‘n’ set but not used [-Wunused-but-set-variable]
 5332 |   Int4         x1, y1, x2, y2, numlines=0, n=0, i=0;
      |                                            ^
dotvibrant.c: In function ‘DOT_FillAlignInfoPointer’:
dotvibrant.c:5565:16: warning: unused variable ‘i’ [-Wunused-variable]
 5565 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c: In function ‘DOT_Prob_FillAlignInfoPointer’:
dotvibrant.c:5681:16: warning: unused variable ‘i’ [-Wunused-variable]
 5681 |   Int4         i=0, n=0;
      |                ^
dotvibrant.c:5680:16: warning: unused variable ‘numsaps’ [-Wunused-variable]
 5680 |   Int4         numsaps = 0, numlines = 0;
      |                ^~~~~~~
dotvibrant.c:5678:37: warning: unused variable ‘sap_tmp’ [-Wunused-variable]
 5678 |   SeqAlignPtr  sap=NULL, salp=NULL, sap_tmp=NULL;
      |                                     ^~~~~~~
dotvibrant.c: In function ‘DOT_DoBlast’:
dotvibrant.c:5918:23: warning: unused variable ‘eval’ [-Wunused-variable]
 5918 |   Char                eval[11]={""};
      |                       ^~~~
dotvibrant.c:5917:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 5917 |   Boolean             is_local;
      |                       ^~~~~~~~
dotvibrant.c:5915:23: warning: unused variable ‘entityID’ [-Wunused-variable]
 5915 |   Uint2               entityID=0;
      |                       ^~~~~~~~
dotvibrant.c: In function ‘DOT_CreateWindowDetails’:
dotvibrant.c:6214:27: warning: variable ‘pr2’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                           ^~~
dotvibrant.c:6214:22: warning: variable ‘pr1’ set but not used [-Wunused-but-set-variable]
 6214 |   PrompT             pr1, pr2;
      |                      ^~~
dotvibrant.c:6207:21: warning: variable ‘g1’ set but not used [-Wunused-but-set-variable]
 6207 |   GrouP          g, g1, g2;
      |                     ^~
dotvibrant.c: In function ‘DOT_ResizeMainWindow’:
dotvibrant.c:6273:35: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
 6273 |   Int2        height, width, in , gap;
      |                                   ^~~
dotvibrant.c: In function ‘DOT_FindAlignment’:
dotvibrant.c:6662:29: warning: unused variable ‘rb_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |                             ^~~~~~~~
dotvibrant.c:6662:13: warning: unused variable ‘lt_fixed’ [-Wunused-variable]
 6662 |   Boolean   lt_fixed=FALSE, rb_fixed=FALSE;
      |             ^~~~~~~~
dotvibrant.c:6661:17: warning: variable ‘data’ set but not used [-Wunused-but-set-variable]
 6661 |   DOTSelDataPtr data;
      |                 ^~~~
dotvibrant.c: In function ‘SCP_CompareOrderOrganizeBioseqs’:
dotvibrant.c:6792:25: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 6792 |    Uint4                itemID=0;
      |                         ^~~~~~
dotvibrant.c: In function ‘SCP_OrganizeAlnsInSet’:
dotvibrant.c:6873:21: warning: variable ‘indextype’ set but not used [-Wunused-but-set-variable]
 6873 |    Int4             indextype;
      |                     ^~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
dotvibrant.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/dotviewer.h:32,
                 from dotvibrant.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotvibrant.c:6642:16: warning: ‘DOT_DeselectPrim’ defined but not used [-Wunused-function]
 6642 | static Boolean DOT_DeselectPrim (SegmenT seg, PrimitivE prim, Uint2 segID,Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
dotvibrant.c:6346:13: warning: ‘DOT_NewAnalysis’ defined but not used [-Wunused-function]
 6346 | static void DOT_NewAnalysis (ButtoN b)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:5894:16: warning: ‘DOT_get_eval’ defined but not used [-Wunused-function]
 5894 | static FloatHi DOT_get_eval(Int4 exp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5325:16: warning: ‘DOT_GetAlign’ defined but not used [-Wunused-function]
 5325 | static Boolean DOT_GetAlign (DOTAlignInfoPtr alp)
      |                ^~~~~~~~~~~~
dotvibrant.c:5281:16: warning: ‘AlnMgr2GetNextLine’ defined but not used [-Wunused-function]
 5281 | static Boolean AlnMgr2GetNextLine(SeqAlignPtr sap, AlnMsg2Ptr amp1, AlnMsg2Ptr amp2, Int4Ptr x1, Int4Ptr y1, Int4Ptr x2, Int4Ptr y2, Int4Ptr n)
      |                ^~~~~~~~~~~~~~~~~~
dotvibrant.c:4767:13: warning: ‘DOT_FeatAnalysisProc’ defined but not used [-Wunused-function]
 4767 | static void DOT_FeatAnalysisProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~
dotvibrant.c:4749:13: warning: ‘DOT_GetInfoProc’ defined but not used [-Wunused-function]
 4749 | static void DOT_GetInfoProc (IteM i)
      |             ^~~~~~~~~~~~~~~
dotvibrant.c:4213:25: warning: ‘DOT_MsgFunc’ defined but not used [-Wunused-function]
 4213 | static Int2 LIBCALLBACK DOT_MsgFunc (OMMsgStructPtr ommsp)
      |                         ^~~~~~~~~~~
dotvibrant.c:3688:13: warning: ‘DOT_HideAcceptProc’ defined but not used [-Wunused-function]
 3688 | static void DOT_HideAcceptProc(ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:3318:13: warning: ‘DOT_AddFeatureToSegment’ defined but not used [-Wunused-function]
 3318 | static void DOT_AddFeatureToSegment(SeqMgrFeatContextPtr context,
      |             ^~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2954:13: warning: ‘DOT_SVChangeLabels’ defined but not used [-Wunused-function]
 2954 | static void DOT_SVChangeLabels (GrouP g)
      |             ^~~~~~~~~~~~~~~~~~
dotvibrant.c:2760:16: warning: ‘DOT_SVGetDiag’ defined but not used [-Wunused-function]
 2760 | static Boolean DOT_SVGetDiag (Uint2 segID, Uint2 primID, VoidPtr userdata)
      |                ^~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_GetNthSeqFromAlign’:
dotvibrant.c:5087:3: warning: ‘spp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5087 |   SeqPortFree(spp);
      |   ^~~~~~~~~~~~~~~~
dotvibrant.c: In function ‘DOT_SVPopulateSequenceViewer.part.0’:
dotvibrant.c:2611:19: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:23: note: ‘strand2’ was declared here
 2380 |   Uint1      strand1, strand2;
      |                       ^~~~~~~
dotvibrant.c:2611:19: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2380:14: note: ‘strand1’ was declared here
 2380 |   Uint1      strand1, strand2;
      |              ^~~~~~~
dotvibrant.c:2561:45: warning: ‘residue_names’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2561 |                       sBuf[c]=*residue_names[(int)*s];
      |                                             ^
dotvibrant.c:2378:16: note: ‘residue_names’ was declared here
 2378 |   CharPtr PNTR residue_names;
      |                ^~~~~~~~~~~~~
dotvibrant.c:2611:19: warning: ‘s_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:42: note: ‘s_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                          ^~~~~
dotvibrant.c:2611:19: warning: ‘q_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2611 |                   DOT_DrawScale(sbSeg, strand1, strand2, rc, margin, res_cnt, bloc_cntr, Fh, q_pos, s_pos, chw_2, chw_4);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:35: note: ‘q_pos’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                                   ^~~~~
dotvibrant.c:2504:21: warning: ‘hit_stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2504 |   hit_stop+=hit_stop/10;
      |             ~~~~~~~~^~~
dotvibrant.c:2370:25: note: ‘hit_stop’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |                         ^~~~~~~~
dotvibrant.c:2572:27: warning: ‘hit_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2572 |                           DOT_HlSeq(sbSeg, rc, margin, i+1, bloc_size, hit_start, hit_stop, Fh,chw_2);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
dotvibrant.c:2370:14: note: ‘hit_start’ was declared here
 2370 |   Int4       hit_start, hit_stop, q_pos, s_pos;
      |              ^~~~~~~~~
dotvibrant.c:2503:16: warning: ‘buf_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |                ^
dotvibrant.c:2367:21: note: ‘buf_len’ was declared here
 2367 |   Int4       vis_2, buf_len;
      |                     ^~~~~~~
dotvibrant.c:2545:18: warning: ‘is_na’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2545 |               if (is_na)
      |                  ^
dotvibrant.c:2361:27: note: ‘is_na’ was declared here
 2361 |   Boolean    ambig=FALSE, is_na;
      |                           ^~~~~
dotvibrant.c:2503:6: warning: ‘s’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2503 |   end=s+buf_len-1;
      |   ~~~^~~~~~~~~~~~
dotvibrant.c:2357:14: note: ‘s’ was declared here
 2357 |   Uint1Ptr   s;
      |              ^
dotvibrant.c:2626:16: warning: ‘q’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2626 |               q++;
      |               ~^~
dotvibrant.c:2356:14: note: ‘q’ was declared here
 2356 |   Uint1Ptr   q;
      |              ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil1.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil1.c: In function ‘IsAuthList’:
dlgutil1.c:2962:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 2962 |   Int4 len;
      |        ^~~
dlgutil1.c: In function ‘TestIntervalEditor’:
dlgutil1.c:5324:20: warning: variable ‘fuzz_to’ set but not used [-Wunused-but-set-variable]
 5324 |   Int2             fuzz_to;
      |                    ^~~~~~~
dlgutil1.c:5323:20: warning: variable ‘fuzz_from’ set but not used [-Wunused-but-set-variable]
 5323 |   Int2             fuzz_from;
      |                    ^~~~~~~~~
dlgutil1.c:5322:41: warning: variable ‘fuzz_before’ set but not used [-Wunused-but-set-variable]
 5322 |   Boolean          isInterval, isPoint, fuzz_before, fuzz_after;
      |                                         ^~~~~~~~~~~
dlgutil1.c: In function ‘DbtagDialogToDbtagPtr’:
dlgutil1.c:7254:16: warning: unused variable ‘val’ [-Wunused-variable]
 7254 |   long int     val;
      |                ^~~
dlgutil1.c:7250:16: warning: unused variable ‘ptr’ [-Wunused-variable]
 7250 |   CharPtr      ptr;
      |                ^~~
dlgutil1.c:7247:16: warning: unused variable ‘num_digits’ [-Wunused-variable]
 7247 |   Int2         num_digits;
      |                ^~~~~~~~~~
dlgutil1.c:7246:16: warning: unused variable ‘notallzero’ [-Wunused-variable]
 7246 |   Boolean      notallzero;
      |                ^~~~~~~~~~
dlgutil1.c:7243:16: warning: unused variable ‘leadingzero’ [-Wunused-variable]
 7243 |   Boolean      leadingzero;
      |                ^~~~~~~~~~~
dlgutil1.c:7238:16: warning: unused variable ‘alldigits’ [-Wunused-variable]
 7238 |   Boolean      alldigits;
      |                ^~~~~~~~~
dlgutil1.c: In function ‘CreateStandardEditMenu’:
dlgutil1.c:9427:8: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
 9427 |   IteM i;
      |        ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from dlgutil1.c:55:
dlgutil1.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dlgutil1.c:8603:25: warning: ‘GetNthNameValuePair’ defined but not used [-Wunused-function]
 8603 | static NameValuePairPtr GetNthNameValuePair (Int4 n, ValNodePtr list)
      |                         ^~~~~~~~~~~~~~~~~~~
dlgutil1.c:8051:16: warning: ‘ParseSpecimenVoucherOk’ defined but not used [-Wunused-function]
 8051 | static Boolean ParseSpecimenVoucherOk (CharPtr str)
      |                ^~~~~~~~~~~~~~~~~~~~~~
dlgutil1.c:1293:13: warning: ‘GbqualsToVisStringDialog’ defined but not used [-Wunused-function]
 1293 | static void GbqualsToVisStringDialog (SeqFeatPtr sfp, DialoG d, CharPtr qual)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dlgutil2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dlgutil2.c: In function ‘CreateImportFields’:
dlgutil2.c:1401:19: warning: variable ‘is_gap’ set but not used [-Wunused-but-set-variable]
 1401 |   Boolean         is_gap = FALSE;
      |                   ^~~~~~
dlgutil2.c: In function ‘UpdateTableDisplayDialogScrollBars’:
dlgutil2.c:3552:11: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |           ^
dlgutil2.c:3552:8: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
 3552 |   Int4 x, y;
      |        ^
dlgutil2.c: In function ‘GetTableDisplayCell’:
dlgutil2.c:3951:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
 3951 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
dlgutil2.c: In function ‘NewCreateInferenceDialog’:
dlgutil2.c:7633:19: warning: variable ‘fnt’ set but not used [-Wunused-but-set-variable]
 7633 |   FonT            fnt;
      |                   ^~~
dlgutil2.c: In function ‘ClickableListOnKey’:
dlgutil2.c:10479:20: warning: variable ‘clp’ set but not used [-Wunused-but-set-variable]
10479 |   ClickableListPtr clp;
      |                    ^~~
dlgutil2.c: In function ‘GetSelectedClickableListText’:
dlgutil2.c:11151:36: warning: variable ‘char_offset’ set but not used [-Wunused-but-set-variable]
11151 |   Int2             item, row, col, char_offset;
      |                                    ^~~~~~~~~~~
dlgutil2.c: In function ‘AutomatchFeatures’:
dlgutil2.c:14210:36: warning: variable ‘s3’ set but not used [-Wunused-but-set-variable]
14210 |   SeqIntPtr                s1, s2, s3;
      |                                    ^~
At top level:
dlgutil2.c:12342:16: warning: ‘ParseMultiListQualOk’ defined but not used [-Wunused-function]
12342 | static Boolean ParseMultiListQualOk (CharPtr val)
      |                ^~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10336:13: warning: ‘ClickClickableListItem’ defined but not used [-Wunused-function]
10336 | static void ClickClickableListItem (DoC d, PoinT pt)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:10316:13: warning: ‘DrawClickableListItem’ defined but not used [-Wunused-function]
10316 | static void DrawClickableListItem (DoC d, RectPtr r, Int2 item, Int2 firstLine)
      |             ^~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:8854:13: warning: ‘GetCategoryNumFromName’ defined but not used [-Wunused-function]
 8854 | static Int4 GetCategoryNumFromName (CharPtr category)
      |             ^~~~~~~~~~~~~~~~~~~~~~
dlgutil2.c:1676:16: warning: ‘GetNameForFeature’ defined but not used [-Wunused-function]
 1676 | static CharPtr GetNameForFeature (SeqFeatPtr sfp)
      |                ^~~~~~~~~~~~~~~~~
dlgutil2.c: In function ‘PopulateDayPopup’:
dlgutil2.c:11438:24: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
11438 |       sprintf (day, "%d", i);
      |                        ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from dlgutil2.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2trmlst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from e2trmlst.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2trmlst.c: In function ‘ReadAFew’:
e2trmlst.c:2230:61: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 2230 |   for (row = 1, termPtr = e2TermListPtr->list; row <= *count, termPtr != NULL; row++, termPtr = termPtr->next) {
      |                                                             ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF e2docsum.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
e2docsum.c: In function ‘FormatCdsSeq’:
e2docsum.c:1523:22: warning: variable ‘gene’ set but not used [-Wunused-but-set-variable]
 1523 |   SeqFeatPtr         gene = NULL;
      |                      ^~~~
e2docsum.c: In function ‘FetchSequence’:
e2docsum.c:1591:16: warning: variable ‘currDbName’ set but not used [-Wunused-but-set-variable]
 1591 |   CharPtr      currDbName;
      |                ^~~~~~~~~~
e2docsum.c:1580:16: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1580 |   Uint1        group_segs = 0;
      |                ^~~~~~~~~~
e2docsum.c: In function ‘SaveDocsumProject’:
e2docsum.c:3606:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3606 |   SummFormPtr  sfp;
      |                ^~~
e2docsum.c: In function ‘RetrieveGeneration’:
e2docsum.c:4135:19: warning: variable ‘e2ip’ set but not used [-Wunused-but-set-variable]
 4135 |   Entrez2InfoPtr  e2ip;
      |                   ^~~~
e2docsum.c: In function ‘SetupMenus’:
e2docsum.c:4849:16: warning: variable ‘c’ set but not used [-Wunused-but-set-variable]
 4849 |   ChoicE       c;
      |                ^
In file included from ../include/sqnutils.h:51,
                 from ../include/dlogutil.h:50,
                 from ../include/bspview.h:48,
                 from e2docsum.c:53:
e2docsum.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strucapi.h:52,
                 from e2docsum.c:62:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2981:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2981 |   system (cmmd);
      |   ^~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin’:
e2docsum.c:2838:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2838 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
e2docsum.c:2883:13: warning: ‘GetBiostrucMaxModels’ defined but not used [-Wunused-function]
 2883 | static Int4 GetBiostrucMaxModels (void)
      |             ^~~~~~~~~~~~~~~~~~~~
e2docsum.c:2850:13: warning: ‘GetBiostrucComplexity’ defined but not used [-Wunused-function]
 2850 | static Int4 GetBiostrucComplexity (void)
      |             ^~~~~~~~~~~~~~~~~~~~~
e2docsum.c:2154:20: warning: ‘cddDocProcs’ defined but not used [-Wunused-variable]
 2154 | static DocPrntProc cddDocProcs [] = { Query_FetchDocSum, Query_FetchFields, FetchUid, NULL };
      |                    ^~~~~~~~~~~
e2docsum.c: In function ‘LaunchStructureViewer’:
e2docsum.c:2980:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 2980 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
e2docsum.c: In function ‘LaunchSequin.isra.0’:
e2docsum.c:2837:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4084 [-Wformat-overflow=]
 2837 |   sprintf (cmmd, "sequin -x < %s &", path);
      |                               ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from e2docsum.c:42:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 15 and 4110 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF asn2graphic.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2graphic.c: In function ‘ParseFilterItem’:
asn2graphic.c:1191:21: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
 1191 |   Int2           i, j;
      |                     ^
asn2graphic.c: In function ‘GeneProductsLayoutInternal’:
asn2graphic.c:3730:36: warning: variable ‘featureStart’ set but not used [-Wunused-but-set-variable]
 3730 |   Int4                    newLeft, featureStart, rowMaxRight;
      |                                    ^~~~~~~~~~~~
asn2graphic.c: In function ‘ScaleSntDrawProc’:
asn2graphic.c:4402:28: warning: variable ‘r’ set but not used [-Wunused-but-set-variable]
 4402 |   RecT                     r;
      |                            ^
asn2graphic.c: In function ‘GphSentProc’:
asn2graphic.c:4997:16: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
 4997 |   Int4         scaleY;
      |                ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from asn2graphic.c:46:
asn2graphic.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asn2graphic.c: In function ‘ParseConfigFile’:
asn2graphic.c:1198:27: warning: ‘%s’ directive writing up to 127 bytes into a region of size 120 [-Wformat-overflow=]
 1198 |   sprintf (sect, "filters.%s", filterItemName);
      |                           ^~
......
 1500 |       FIP = ParseFilterItem (buf, defaultRowPadding, defaultGroupPadding, defaultLayout, VCP);
      |                              ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 136 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:946:21: warning: ‘.master’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
  946 |   sprintf (sect, "%s.master", appearanceNameInFile);
      |                     ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1006:29: warning: ‘.bioseq’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1006 |   sprintf (outputBuffer, "%s.bioseq", appearanceNameInFile);
      |                             ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1008:29: warning: ‘.imp’ directive writing 4 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1008 |   sprintf (outputBuffer, "%s.imp", appearanceNameInFile);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 132 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1011:31: warning: ‘.import’ directive writing 7 bytes into a region of size between 1 and 128 [-Wformat-overflow=]
 1011 |     sprintf (outputBuffer, "%s.import", appearanceNameInFile);
      |                               ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 135 bytes into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2graphic.c:1021:34: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1021 |     sprintf (outputBuffer, "%s.%s", appearanceNameInFile, FindFeatStrFromFeatDefType (i));
      |                                  ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2graphic.h:45,
                 from ../include/asn2graphicp.h:45,
                 from asn2graphic.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 129) into a destination of size 128
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF medview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/medview.h:48,
                 from medview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medview.c: In function ‘PrintMedlineViewForm’:
medview.c:588:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bspview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from bspview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from bspview.c:61:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gbfview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gbfview.c: In function ‘RelModeFailText’:
gbfview.c:1004:22: warning: variable ‘hasPubs’ set but not used [-Wunused-but-set-variable]
 1004 |   Boolean            hasPubs;
      |                      ^~~~~~~
gbfview.c: In function ‘PopulateFlatFile’:
gbfview.c:1292:22: warning: variable ‘doColors’ set but not used [-Wunused-but-set-variable]
 1292 |   Boolean            doColors;
      |                      ^~~~~~~~
gbfview.c: In function ‘PopulateFasta’:
gbfview.c:1717:33: warning: left-hand operand of comma expression has no effect [-Wunused-value]
 1717 |     if (ISA_na (bsp->mol)) {TRUE,
      |                                 ^
gbfview.c:1649:20: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
 1649 |   Uint1            group_segs;
      |                    ^~~~~~~~~~
gbfview.c: In function ‘PopulateAsnOrXML’:
gbfview.c:1972:16: warning: variable ‘lookupFar’ set but not used [-Wunused-but-set-variable]
 1972 |   Boolean      lookupFar = FALSE;
      |                ^~~~~~~~~
gbfview.c:1971:16: warning: variable ‘lockFar’ set but not used [-Wunused-but-set-variable]
 1971 |   Boolean      lockFar = FALSE;
      |                ^~~~~~~
gbfview.c: In function ‘PrintFlatFileFastaOrAsn’:
gbfview.c:2494:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 2494 |     system (cmmd);
      |     ^~~~~~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:667:21: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  667 |                     system (cmmd);
      |                     ^~~~~~~~~~~~~
At top level:
gbfview.c:1234:13: warning: ‘LookForFarProds’ defined but not used [-Wunused-function]
 1234 | static void LookForFarProds (
      |             ^~~~~~~~~~~~~~~
gbfview.c:1215:13: warning: ‘LookForFarBsp’ defined but not used [-Wunused-function]
 1215 | static void LookForFarBsp (
      |             ^~~~~~~~~~~~~
gbfview.c:944:13: warning: ‘LookForPubs’ defined but not used [-Wunused-function]
  944 | static void LookForPubs (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~
gbfview.c:289:16: warning: ‘ColorIcon’ defined but not used [-Wunused-function]
  289 | static Boolean ColorIcon (
      |                ^~~~~~~~~
gbfview.c: In function ‘ReleaseIcon’:
gbfview.c:666:42: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  666 |                     sprintf (cmmd, "open %s", path);
      |                                          ^~   ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gbfview.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphview.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from gphview.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphview.c: In function ‘ReleaseAlignment’:
gphview.c:1306:18: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1306 |   SeqLocPtr      slp;
      |                  ^~~
gphview.c: In function ‘DrawAlignOnAllSequences’:
gphview.c:1391:10: warning: variable ‘vn’ set but not used [-Wunused-but-set-variable]
 1391 |  ValNode vn;
      |          ^~
gphview.c: In function ‘ReleaseDesktop’:
gphview.c:1836:18: warning: variable ‘seg’ set but not used [-Wunused-but-set-variable]
 1836 |   SegmenT        seg;
      |                  ^~~
gphview.c: In function ‘AutoScrollGeneName’:
gphview.c:2100:21: warning: variable ‘num’ set but not used [-Wunused-but-set-variable]
 2100 |   Int2              num;
      |                     ^~~
gphview.c: In function ‘DisplayGeneChoiceWindow’:
gphview.c:2426:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2426 |   PrompT             p;
      |                      ^
gphview.c: In function ‘PrintGraphical’:
gphview.c:3268:14: warning: unused variable ‘ans’ [-Wunused-variable]
 3268 |   MsgAnswer  ans;
      |              ^~~
gphview.c: In function ‘PopulateAsn2GphGraphic’:
gphview.c:3868:16: warning: variable ‘min’ set but not used [-Wunused-but-set-variable]
 3868 |   Int4         min;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gphdraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gphdraw.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gphdraw.c: In function ‘GraphSentProc’:
gphdraw.c:195:18: warning: variable ‘scaleY’ set but not used [-Wunused-but-set-variable]
  195 |   Int4           scaleY;
      |                  ^~~~~~
gphdraw.c: In function ‘DrawGraphToPanel’:
gphdraw.c:453:27: warning: variable ‘xp’ set but not used [-Wunused-but-set-variable]
  453 |   Int4Ptr        xpoints, xp;
      |                           ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gxydraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gxydraw.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gxydraw.c: In function ‘DotXYPlot’:
gxydraw.c:259:19: warning: ‘xaxiscount’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  259 |   gsp->xaxiscount = xaxiscount;
      |   ~~~~~~~~~~~~~~~~^~~~~~~~~~~~
gxydraw.c:182:19: note: ‘xaxiscount’ was declared here
  182 |   Int4            xaxiscount, yaxiscount;
      |                   ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gtrdraw.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from gtrdraw.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqpanel.c: In function ‘FillFeatureInfo’:
seqpanel.c:427:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:427:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
  427 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘DrawFeatureCodonLines’:
seqpanel.c:1897:21: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 1897 |   Char              tmp[2];
      |                     ^~~
seqpanel.c: In function ‘DrawFeature’:
seqpanel.c:2127:21: warning: variable ‘prot_len’ set but not used [-Wunused-but-set-variable]
 2127 |   Int4              prot_len;
      |                     ^~~~~~~~
seqpanel.c: In function ‘GetSeqChapterFeatureInfo’:
seqpanel.c:3136:18: warning: variable ‘stop’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |                  ^~~~
seqpanel.c:3136:11: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 3136 |   Int4 j, start, stop;
      |           ^~~~~
seqpanel.c: In function ‘onSeqEdVScrollBarSeqPanel’:
seqpanel.c:3406:17: warning: variable ‘totallines’ set but not used [-Wunused-but-set-variable]
 3406 |   Int4          totallines;
      |                 ^~~~~~~~~~
seqpanel.c: In function ‘PrintFeature’:
seqpanel.c:3812:28: warning: variable ‘fRight’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                            ^~~~~~
seqpanel.c:3812:21: warning: variable ‘fLeft’ set but not used [-Wunused-but-set-variable]
 3812 |   Int4              fLeft, fRight, swap;
      |                     ^~~~~
seqpanel.c: In function ‘PrintTranslatedFrame’:
seqpanel.c:3966:17: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 3966 |   Char          tmp[2];
      |                 ^~~
seqpanel.c: In function ‘ExportSequenceText’:
seqpanel.c:4372:44: warning: pointer targets in passing argument 1 of ‘complement_string’ differ in signedness [-Wpointer-sign]
 4372 |               complement_string (file_line + SEQ_ED_PRINT_SEQ_OFFSET);
      |                                            ^
      |                                            |
      |                                            Nlm_Uint1Ptr {aka unsigned char *}
In file included from ../include/alignmgr2.h:112,
                 from seqpanel.c:39:
../include/salutil.h:78:47: note: expected ‘Nlm_CharPtr’ {aka ‘char *’} but argument is of type ‘Nlm_Uint1Ptr’ {aka ‘unsigned char *’}
   78 | NLM_EXTERN CharPtr complement_string (CharPtr str);
seqpanel.c:4236:17: warning: variable ‘curr_para_strings’ set but not used [-Wunused-but-set-variable]
 4236 |   ValNodePtr    curr_para_strings = NULL;
      |                 ^~~~~~~~~~~~~~~~~
seqpanel.c:4229:17: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
 4229 |   Uint1Ptr      buf;
      |                 ^~~
seqpanel.c: In function ‘SeqEdOnClick’:
seqpanel.c:4946:21: warning: variable ‘direction’ set but not used [-Wunused-but-set-variable]
 4946 |   Int4              direction;
      |                     ^~~~~~~~~
seqpanel.c: In function ‘SeqAlnOnDrag’:
seqpanel.c:5685:34: warning: variable ‘is_ctrl’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                                  ^~~~~~~
seqpanel.c:5685:17: warning: variable ‘is_double_click’ set but not used [-Wunused-but-set-variable]
 5685 |   Boolean       is_double_click, is_ctrl;
      |                 ^~~~~~~~~~~~~~~
seqpanel.c: In function ‘ResizeSeqEdView’:
seqpanel.c:5760:8: warning: variable ‘sequence_pos’ set but not used [-Wunused-but-set-variable]
 5760 |   Int4 sequence_pos = 0;
      |        ^~~~~~~~~~~~
seqpanel.c:5755:8: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 5755 |   Int4 height, width;
      |        ^~~~~~
seqpanel.c: In function ‘WriteAlignmentInterleaveToFileEx’:
seqpanel.c:8665:22: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                      ^~
      |                      |
      |                      FILE * {aka struct _IO_FILE *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ {aka ‘struct _IO_FILE *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8665:26: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8665 |               fputs (fp, printed_line);
      |                          ^~~~~~~~~~~~
      |                          |
      |                          Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:64: note: expected ‘FILE * restrict’ {aka ‘struct _IO_FILE * restrict’} but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘WriteAlignmentContiguousToFile’:
seqpanel.c:8761:20: warning: passing argument 1 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                    ^~
      |                    |
      |                    FILE * {aka struct _IO_FILE *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:42: note: expected ‘const char * restrict’ but argument is of type ‘FILE *’ {aka ‘struct _IO_FILE *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                   ~~~~~~~~~~~~~~~~~~~~~~~^~~
seqpanel.c:8761:24: warning: passing argument 2 of ‘fputs’ from incompatible pointer type [-Wincompatible-pointer-types]
 8761 |             fputs (fp, printed_line);
      |                        ^~~~~~~~~~~~
      |                        |
      |                        Nlm_CharPtr {aka char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
/usr/s390x-linux-gnu/include/stdio.h:626:64: note: expected ‘FILE * restrict’ {aka ‘struct _IO_FILE * restrict’} but argument is of type ‘Nlm_CharPtr’ {aka ‘char *’}
  626 | extern int fputs (const char *__restrict __s, FILE *__restrict __stream);
      |                                               ~~~~~~~~~~~~~~~~~^~~~~~~~
seqpanel.c: In function ‘ReverseSequenceStrandsInAlignment’:
seqpanel.c:9008:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9008 |   SeqEntryPtr   sep;
      |                 ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from seqpanel.c:39:
seqpanel.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
seqpanel.c:1171:16: warning: ‘GetAlignmentColumnPercentIDsForAlignmentSection’ defined but not used [-Wunused-function]
 1171 | static double *GetAlignmentColumnPercentIDsForAlignmentSection (BioseqViewPtr bvp, Int4 line, Int4 aln_idx)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘SeqEdFindPatternDialog’:
../include/vibdefns.h:535:22: warning: ‘g1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
seqpanel.c:7632:25: note: ‘g1’ was declared here
 7632 |   GrouP              h, g1, g2;
      |                         ^~
In file included from ../include/ncbi.h:62,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/bspview.h:48,
                 from seqpanel.c:33:
seqpanel.c: In function ‘PrintFeature’:
../include/ncbistr.h:331:19: warning: ‘str_prot’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  331 | #define StringLen Nlm_StringLen
      |                   ^~~~~~~~~~~~~
seqpanel.c:3810:21: note: ‘str_prot’ was declared here
 3810 |   CharPtr           str_prot;
      |                     ^~~~~~~~
seqpanel.c: In function ‘SeqEdExportProc’:
seqpanel.c:4329:13: warning: ‘seq_pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4329 |             SeqEdPrintTextLineToFile ((CharPtr)file_line, from, to, seq_pos, fp);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:4233:17: note: ‘seq_pos’ was declared here
 4233 |   Int4          seq_pos;
      |                 ^~~~~~~
seqpanel.c: In function ‘onDrawSeqPanel’:
seqpanel.c:1301:24: warning: ‘alnbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1301 |     MemCpy(buf, alnbuf + from, len);
      |                 ~~~~~~~^~~~~~
seqpanel.c:2466:33: note: ‘alnbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                                 ^~~~~~
seqpanel.c:1252:3: warning: ‘seqbuf’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1252 |   AlignmentIntervalToString (tmp_salp, row, start, stop, bvp->TargetRow,
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1253 |                              bvp->viewWholeEntity, seqbuf, alnbuf, &alnbuf_len,
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1254 |                              bvp->showAlnSubstitutions);
      |                              ~~~~~~~~~~~~~~~~~~~~~~~~~~
seqpanel.c:2466:25: note: ‘seqbuf’ was declared here
 2466 |   Uint1Ptr         buf, seqbuf, alnbuf;
      |                         ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingengraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingengraph.c: In function ‘Ing_BigEncodeIdxFeat’:
ingengraph.c:262:11: warning: dereferencing type-punned pointer will break strict-aliasing rules [-Wstrict-aliasing]
  262 |  return *((Uint8Ptr) index_g);
      |          ~^~~~~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_AddOneAlignToOverviewPage’:
ingengraph.c:355:3: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  355 |   else
      |   ^~~~
ingengraph.c:357:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  357 |     prim = AddRectangle(seg, start, (row)*(-20), stop, (row)*(-20)+j, NO_ARROW, FALSE,0);
      |     ^~~~
ingengraph.c:347:13: warning: unused variable ‘bsp’ [-Wunused-variable]
  347 |   BioseqPtr bsp=NULL;
      |             ^~~
ingengraph.c: In function ‘Ing_AddAlignsToOverviewPage’:
ingengraph.c:372:18: warning: unused variable ‘buf’ [-Wunused-variable]
  372 |   Char           buf[41]={""};
      |                  ^~~
ingengraph.c:367:18: warning: variable ‘NewLine’ set but not used [-Wunused-but-set-variable]
  367 |   Boolean        NewLine=FALSE;
      |                  ^~~~~~~
ingengraph.c: In function ‘Ing_DrawOverviewPage’:
ingengraph.c:492:14: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
  492 |   Int4       offset;
      |              ^~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/ingengraph.h:54,
                 from ingengraph.c:45:
../include/vibdefns.h:468:17: warning: unused variable ‘Nlm_Visible’ [-Wunused-variable]
  468 | #define Visible Nlm_Visible
      |                 ^~~~~~~~~~~
ingengraph.c:488:14: note: in expansion of macro ‘Visible’
  488 |   Boolean    Visible=FALSE;
      |              ^~~~~~~
ingengraph.c: In function ‘Ing_PopOverviewPage’:
ingengraph.c:715:16: warning: variable ‘margin’ set but not used [-Wunused-but-set-variable]
  715 |   Int4         margin, len;
      |                ^~~~~~
ingengraph.c:714:16: warning: unused variable ‘buf’ [-Wunused-variable]
  714 |   Char         buf[50]={""};
      |                ^~~
ingengraph.c:708:16: warning: unused variable ‘sanp’ [-Wunused-variable]
  708 |   SeqAnnotPtr  sanp=NULL;
      |                ^~~~
ingengraph.c: In function ‘Ing_AddAlignsToDetailedPage’:
ingengraph.c:1097:7: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 1097 |       if ((start - offset - (label_len - feat_len)/2)<0)
      |       ^~
ingengraph.c:1099:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 1099 |         if (bOver_the_edge)
      |         ^~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1437:16: warning: variable ‘CurrentSeg’ set but not used [-Wunused-but-set-variable]
 1437 |   SegmenT      CurrentSeg=NULL;
      |                ^~~~~~~~~~
ingengraph.c: In function ‘Ing_ExploreSegments’:
ingengraph.c:1829:22: warning: unused variable ‘isDraft’ [-Wunused-variable]
 1829 |   Boolean            isDraft = FALSE;
      |                      ^~~~~~~
ingengraph.c:1827:22: warning: unused variable ‘vnp’ [-Wunused-variable]
 1827 |   ValNodePtr         vnp = NULL;
      |                      ^~~
ingengraph.c:1826:22: warning: unused variable ‘gbp’ [-Wunused-variable]
 1826 |   GBBlockPtr         gbp = NULL;
      |                      ^~~
ingengraph.c:1824:33: warning: variable ‘black’ set but not used [-Wunused-but-set-variable]
 1824 |   Uint1              orange[3], black[3];
      |                                 ^~~~~
ingengraph.c:1823:33: warning: variable ‘lime’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                                 ^~~~
ingengraph.c:1823:22: warning: variable ‘indigo’ set but not used [-Wunused-but-set-variable]
 1823 |   Uint1              indigo[3], lime[3];
      |                      ^~~~~~
ingengraph.c: In function ‘Ing_AddGCRect’:
ingengraph.c:1933:17: warning: variable ‘comp2’ set but not used [-Wunused-but-set-variable]
 1933 |    FloatHi      comp2, comp_prev;
      |                 ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/ingengraph.h:63,
                 from ingengraph.c:45:
ingengraph.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
ingengraph.c:71:13: warning: ‘Ing_GetNamesZoomedVal’ declared ‘static’ but never defined [-Wunused-function]
   71 | static void Ing_GetNamesZoomedVal(VieweR vNames,Int4Ptr from, Int4Ptr to,
      |             ^~~~~~~~~~~~~~~~~~~~~
ingengraph.c:602:28: warning: ‘Ing_CollectFeatures1’ defined but not used [-Wunused-function]
  602 | static Boolean LIBCALLBACK Ing_CollectFeatures1(SeqFeatPtr sfp, SeqMgrFeatContextPtr sfc)
      |                            ^~~~~~~~~~~~~~~~~~~~
ingengraph.c:583:24: warning: ‘Ing_SortByChoice’ defined but not used [-Wunused-function]
  583 | static int LIBCALLBACK Ing_SortByChoice (VoidPtr ptr1, VoidPtr ptr2)
      |                        ^~~~~~~~~~~~~~~~
ingengraph.c: In function ‘Ing_PopDetailedPage’:
ingengraph.c:1092:27: warning: ‘%s’ directive writing up to 40 bytes into a region of size 38 [-Wformat-overflow=]
 1092 |         sprintf(label,"gi|%s", buf);
      |                           ^~   ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from ../include/ingengraph.h:52,
                 from ingengraph.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 4 and 44 bytes into a destination of size 41
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenext.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenext.c: In function ‘Ing_KeepTheBestAlignments’:
ingenext.c:167:20: warning: variable ‘amaip’ set but not used [-Wunused-but-set-variable]
  167 |   AMAlignIndex2Ptr amaip = NULL;
      |                    ^~~~~
ingenext.c: In function ‘Ing_HandleQBlastResults’:
ingenext.c:272:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  272 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_HandleResults’:
ingenext.c:535:10: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  535 |   while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, TRUE, TRUE, TRUE)){
      |          ^~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:739:18: warning: unused variable ‘paramlist’ [-Wunused-variable]
  739 |   ValNodePtr     paramlist = NULL;
      |                  ^~~~~~~~~
ingenext.c: In function ‘Ing_tRNAscanProc’:
ingenext.c:915:22: warning: unused variable ‘moveMe’ [-Wunused-variable]
  915 |   ValNodePtr         moveMe = NULL;
      |                      ^~~~~~
ingenext.c:906:22: warning: unused variable ‘first’ [-Wunused-variable]
  906 |   TexT               first = NULL;
      |                      ^~~~~
ingenext.c:902:22: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  902 |   ButtoN             b;
      |                      ^
ingenext.c:896:17: warning: unused variable ‘args’ [-Wunused-variable]
  896 |   CharPtr       args = NULL;
      |                 ^~~~
ingenext.c: In function ‘Ing_ReadtRNAConfigFile’:
ingenext.c:1125:15: warning: variable ‘demomode’ set but not used [-Wunused-but-set-variable]
 1125 |   Boolean     demomode = FALSE;
      |               ^~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1312:23: warning: variable ‘is_local’ set but not used [-Wunused-but-set-variable]
 1312 |   Boolean             is_local, first_bsp=TRUE;
      |                       ^~~~~~~~
ingenext.c: In function ‘Ing_CreateDotMatrixForm’:
ingenext.c:1834:14: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1834 |       while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |              ^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:1994:20: warning: unused variable ‘sanp’ [-Wunused-variable]
 1994 |   SeqAnnotPtr      sanp = NULL;
      |                    ^~~~
ingenext.c:1993:20: warning: unused variable ‘spidp_next’ [-Wunused-variable]
 1993 |   SPI_mRNAPtr      spidp_next = NULL;
      |                    ^~~~~~~~~~
ingenext.c:1992:20: warning: unused variable ‘spidp_head’ [-Wunused-variable]
 1992 |   SPI_mRNAPtr      spidp_head = NULL;
      |                    ^~~~~~~~~~
ingenext.c: In function ‘Ing_ReadmRNAs_ext’:
ingenext.c:2025:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2025 |    while (dataptr = ReadAsnFastaOrFlatFile(fp, &datatype, NULL, FALSE, FALSE, TRUE, FALSE))
      |           ^~~~~~~
ingenext.c: In function ‘Ing_DeleteInsertInGenomic’:
ingenext.c:2522:16: warning: unused variable ‘newsegs’ [-Wunused-variable]
 2522 |   Int2         newsegs = 0, offset = 0;
      |                ^~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2777:11: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 2777 |           if (!All)
      |           ^~
ingenext.c:2781:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 2781 |             SeqLocReplace(msip, mmis, mmis, mstrand, gsip, gmis, gmis, gstrand);
      |             ^~~~~~~~~~~~~
ingenext.c:2615:21: warning: unused variable ‘str’ [-Wunused-variable]
 2615 |   Char              str[200] = {""};
      |                     ^~~
ingenext.c:2612:22: warning: unused variable ‘amaip’ [-Wunused-variable]
 2612 |   AMAlignIndex2Ptr   amaip = NULL;
      |                      ^~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3025:15: warning: unused variable ‘sip’ [-Wunused-variable]
 3025 |   SeqIdPtr    sip = NULL;
      |               ^~~
ingenext.c: In function ‘Ing_PrintSpideyReport’:
ingenext.c:3471:27: warning: variable ‘gmis’ set but not used [-Wunused-but-set-variable]
 3471 |   Int4              mmis, gmis, miscount = 0;
      |                           ^~~~
ingenext.c: In function ‘Ing_PrintBlastReport’:
ingenext.c:3853:18: warning: unused variable ‘more’ [-Wunused-variable]
 3853 |   Boolean        more = FALSE;
      |                  ^~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/vibdefns.h:652:16: warning: variable ‘Nlm_DkGray’ set but not used [-Wunused-but-set-variable]
  652 | #define DkGray Nlm_DkGray
      |                ^~~~~~~~~~
ingenext.c:3850:18: note: in expansion of macro ‘DkGray’
 3850 |   Uint1          DkGray[3];
      |                  ^~~~~~
ingenext.c: In function ‘Ing_PopulateReport’:
ingenext.c:4328:20: warning: unused variable ‘sip’ [-Wunused-variable]
 4328 |   SeqIdPtr         sip=NULL;
      |                    ^~~
ingenext.c:4324:20: warning: unused variable ‘temp’ [-Wunused-variable]
 4324 |   CharPtr          temp = NULL;
      |                    ^~~~
ingenext.c: In function ‘Ing_ResizeReportWindow’:
ingenext.c:4484:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
 4484 |   BaR      hsb;
      |            ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
ingenext.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenext.c:130:13: warning: ‘querytimercount’ defined but not used [-Wunused-variable]
  130 | static Int4 querytimercount = 0;
      |             ^~~~~~~~~~~~~~~
ingenext.c:129:13: warning: ‘querytimerlimit’ defined but not used [-Wunused-variable]
  129 | static Int4 querytimerlimit = 100;
      |             ^~~~~~~~~~~~~~~
ingenext.c:59:28: warning: ‘Ing_BlastCallback’ defined but not used [-Wunused-function]
   59 | static Boolean LIBCALLBACK Ing_BlastCallback (BlastResponse *brp,
      |                            ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenext.c: In function ‘Ing_DoBlast2Seqs’:
ingenext.c:1457:17: warning: ‘e_head’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1457 |      e_tmp->next=e_head;
      |      ~~~~~~~~~~~^~~~~~~
ingenext.c: In function ‘Ing_RunSpidey’:
ingenext.c:2003:45: warning: ‘%s’ directive writing up to 30 bytes into a region of size 14 [-Wformat-overflow=]
 2003 |     sprintf(buf, "Spidey returned NULL for  %s", str);
      |                                             ^~   ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 57 bytes into a destination of size 40
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_PrintBlastReport.isra.0’:
ingenext.c:3893:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3893 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:3911:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3911 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_MismatchProc’:
ingenext.c:3170:32: warning: ‘gstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3170 |         gstart = start + (stop - gstart);
      |                          ~~~~~~^~~~~~~~~
ingenext.c:3206:45: warning: ‘mstart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3206 |       else if (mstart == R1 || mstart == R2 || mstart == R3){
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_AccepttRNAargsProc’:
ingenext.c:780:32: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  780 |            sprintf (cpy, "%s=%s", upp->param, last);
      |                                ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:794:30: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  794 |          sprintf (cpy, "%s=%s", upp->param, last);
      |                              ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c: In function ‘Ing_ReplaceAllMismatchedInLocation’:
ingenext.c:2617:33: warning: ‘nmismatches’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2617 |   Int4              gmis, mmis, nmismatches, nkeep = 0;
      |                                 ^~~~~~~~~~~
ingenext.c: In function ‘Ing_PrintSpideyReport.isra.0’:
ingenext.c:3534:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3534 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenext.c:3552:19: warning: ‘, ’ directive writing 2 bytes into a region of size between 1 and 255 [-Wformat-overflow=]
 3552 |   sprintf(tmp, "%s, ", defline);
      |                   ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ../include/ingenext.h:53,
                 from ingenext.c:46:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 3 and 257 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ingenwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ingenwin.c: In function ‘Ing_PopulateDetailedPage’:
ingenwin.c:134:22: warning: unused variable ‘bSelected’ [-Wunused-variable]
  134 |   Boolean            bSelected = FALSE;
      |                      ^~~~~~~~~
ingenwin.c: In function ‘Ing_DoRange’:
ingenwin.c:394:22: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
  394 |   BioseqPtr          bsp;
      |                      ^~~
ingenwin.c: In function ‘Ing_PopulateCpG’:
ingenwin.c:576:19: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  576 |   Int2    cxChar, nchars;
      |                   ^~~~~~
ingenwin.c: In function ‘Ing_ResizeCpGWindow’:
ingenwin.c:642:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  642 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_PopulateMotif’:
ingenwin.c:718:26: warning: variable ‘nchars’ set but not used [-Wunused-but-set-variable]
  718 |   Int2           cxChar, nchars;
      |                          ^~~~~~
ingenwin.c:717:24: warning: variable ‘swidth’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                        ^~~~~~
ingenwin.c:717:18: warning: variable ‘slen’ set but not used [-Wunused-but-set-variable]
  717 |   Int4           slen, swidth;
      |                  ^~~~
ingenwin.c: In function ‘Ing_ResizeMotifWindow’:
ingenwin.c:785:12: warning: unused variable ‘name’ [-Wunused-variable]
  785 |   CharPtr  name = NULL;
      |            ^~~~
ingenwin.c:783:12: warning: variable ‘hsb’ set but not used [-Wunused-but-set-variable]
  783 |   BaR      hsb;
      |            ^~~
ingenwin.c: In function ‘Ing_ShowComplexity’:
ingenwin.c:1270:10: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1270 |   while ((Boolean)(slp_feat=SeqLocFindNext(slp_dust,slp_feat))){
      |          ^
ingenwin.c: In function ‘Ing_CreateNewFeature’:
ingenwin.c:1301:22: warning: unused variable ‘rnatype’ [-Wunused-variable]
 1301 |   Uint1              rnatype=0;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_GetAlignmentIntervals’:
ingenwin.c:1418:20: warning: unused variable ‘master’ [-Wunused-variable]
 1418 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldGetAlignmentIntervals’:
ingenwin.c:1494:20: warning: unused variable ‘master’ [-Wunused-variable]
 1494 |    SeqIdPtr        master = NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_OldMakeLocListFromSAP’:
ingenwin.c:1613:26: warning: unused variable ‘slp2’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |                          ^~~~
ingenwin.c:1613:13: warning: unused variable ‘slp1’ [-Wunused-variable]
 1613 |   SeqLocPtr slp1 = NULL, slp2 = NULL;
      |             ^~~~
ingenwin.c: In function ‘Ing_OM_MsgFunc’:
ingenwin.c:2380:15: warning: the address of ‘sfc’ will always evaluate as ‘true’ [-Waddress]
 2380 |           if (&sfc)
      |               ^
ingenwin.c:2284:22: warning: unused variable ‘segID’ [-Wunused-variable]
 2284 |   Uint2              segID=0;
      |                      ^~~~~
ingenwin.c:2280:22: warning: unused variable ‘sep’ [-Wunused-variable]
 2280 |   SeqEntryPtr        sep=NULL;
      |                      ^~~
ingenwin.c:2271:31: warning: unused variable ‘number’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                               ^~~~~~
ingenwin.c:2271:22: warning: unused variable ‘score’ [-Wunused-variable]
 2271 |   Int4               score=0, number=0;
      |                      ^~~~~
ingenwin.c:2270:34: warning: unused variable ‘n’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                                  ^
ingenwin.c:2270:28: warning: unused variable ‘s2’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                            ^~
ingenwin.c:2270:22: warning: unused variable ‘s1’ [-Wunused-variable]
 2270 |   Int4               s1=0, s2=0, n=1;
      |                      ^~
ingenwin.c: In function ‘Ing_MoveCursor’:
ingenwin.c:2631:9: warning: variable ‘grayClr2’ set but not used [-Wunused-but-set-variable]
 2631 |   Uint1 grayClr2[3];
      |         ^~~~~~~~
ingenwin.c: In function ‘Ing_FeatViewerClickProc’:
ingenwin.c:2814:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2814 |   if (subSeg=FindSegPrim(v, pt, NULL, NULL, &prim)){
      |       ^~~~~~
ingenwin.c:2804:14: warning: unused variable ‘slp’ [-Wunused-variable]
 2804 |   SeqLocPtr  slp=NULL;
      |              ^~~
ingenwin.c: In function ‘Ing_SequenceClickProc’:
ingenwin.c:2908:22: warning: variable ‘ssp’ set but not used [-Wunused-but-set-variable]
 2908 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c: In function ‘Ing_ReadInBlastAsn’:
ingenwin.c:3077:19: warning: unused variable ‘Report’ [-Wunused-variable]
 3077 |   IngReportPtr    Report=NULL;
      |                   ^~~~~~
ingenwin.c:3075:19: warning: unused variable ‘sip’ [-Wunused-variable]
 3075 |   SeqIdPtr        sip=NULL;
      |                   ^~~
ingenwin.c:3074:19: warning: unused variable ‘salp’ [-Wunused-variable]
 3074 |   SeqAlignPtr     salp=NULL;
      |                   ^~~~
ingenwin.c:3073:19: warning: unused variable ‘n_sap’ [-Wunused-variable]
 3073 |   SeqAlignPtr     n_sap=NULL;
      |                   ^~~~~
ingenwin.c: In function ‘Ing_ParseSeqIdFile’:
ingenwin.c:3142:20: warning: unused variable ‘bsp’ [-Wunused-variable]
 3142 |    BioseqPtr       bsp=NULL;
      |                    ^~~
ingenwin.c: In function ‘Ing_ReadInFeatureTable’:
ingenwin.c:3194:20: warning: variable ‘sanp’ set but not used [-Wunused-but-set-variable]
 3194 |    SeqAnnotPtr     sanp;
      |                    ^~~~
ingenwin.c: In function ‘Ing_AssembleGenscanInfo’:
ingenwin.c:3258:17: warning: unused variable ‘slp’ [-Wunused-variable]
 3258 |    SeqLocPtr    slp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInGenscan’:
ingenwin.c:3300:33: warning: unused variable ‘str’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                                 ^~~
ingenwin.c:3300:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3300 |    CharPtr         letter=NULL, str=NULL;
      |                    ^~~~~~
ingenwin.c:3298:33: warning: unused variable ‘first_pass’ [-Wunused-variable]
 3298 |    Boolean         found=FALSE, first_pass=FALSE;
      |                                 ^~~~~~~~~~
ingenwin.c: In function ‘Ing_AssembleTabDelimited’:
ingenwin.c:3519:17: warning: variable ‘score’ set but not used [-Wunused-but-set-variable]
 3519 |    Int4         score;
      |                 ^~~~~
ingenwin.c:3516:17: warning: unused variable ‘tmp’ [-Wunused-variable]
 3516 |    CharPtr      tmp=NULL;
      |                 ^~~
ingenwin.c: In function ‘Ing_ReadInTabDelimited’:
ingenwin.c:3659:40: warning: variable ‘label_str’ set but not used [-Wunused-but-set-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                                        ^~~~~~~~~
ingenwin.c:3659:20: warning: unused variable ‘tmp’ [-Wunused-variable]
 3659 |    CharPtr         tmp=NULL, str=NULL, label_str=NULL;
      |                    ^~~
ingenwin.c:3653:20: warning: unused variable ‘lip_tmp’ [-Wunused-variable]
 3653 |    IngInfoPtr      lip_tmp=NULL;
      |                    ^~~~~~~
ingenwin.c:3650:20: warning: unused variable ‘letter’ [-Wunused-variable]
 3650 |    CharPtr         letter=NULL;
      |                    ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3984:16: warning: unused variable ‘Report’ [-Wunused-variable]
 3984 |   IngReportPtr Report=NULL;
      |                ^~~~~~
ingenwin.c: In function ‘Ing_FileOpenMain’:
ingenwin.c:4078:21: warning: unused variable ‘sep_orig’ [-Wunused-variable]
 4078 |   SeqEntryPtr       sep_orig=NULL, sep=NULL;
      |                     ^~~~~~~~
ingenwin.c: In function ‘Ing_ResizeMainWindow’:
ingenwin.c:4187:25: warning: variable ‘InfoHeight’ set but not used [-Wunused-but-set-variable]
 4187 |   Int2     RulerHeight, InfoHeight;
      |                         ^~~~~~~~~~
ingenwin.c: In function ‘Ing_OpenFromFileORNetwork’:
ingenwin.c:4491:25: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4491 |   ButtoN              b,b2;
      |                         ^~
ingenwin.c: In function ‘Ing_EditFeature’:
ingenwin.c:4640:22: warning: variable ‘igvp’ set but not used [-Wunused-but-set-variable]
 4640 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_MarkSeqAnnot’:
ingenwin.c:4713:16: warning: unused variable ‘bNoParent’ [-Wunused-variable]
 4713 |  Boolean       bNoParent = FALSE;
      |                ^~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateClickProc’:
ingenwin.c:5064:22: warning: unused variable ‘primID’ [-Wunused-variable]
 5064 |   Uint2              primID=0;
      |                      ^~~~~~
ingenwin.c:5063:22: warning: unused variable ‘itemtype’ [-Wunused-variable]
 5063 |   Uint2              itemtype=0;
      |                      ^~~~~~~~
ingenwin.c:5062:22: warning: unused variable ‘itemID’ [-Wunused-variable]
 5062 |   Uint4              itemID=0;
      |                      ^~~~~~
ingenwin.c:5061:22: warning: unused variable ‘entityID’ [-Wunused-variable]
 5061 |   Uint2              entityID=0;
      |                      ^~~~~~~~
ingenwin.c:5060:22: warning: unused variable ‘ssp’ [-Wunused-variable]
 5060 |   SelStructPtr       ssp=NULL;
      |                      ^~~
ingenwin.c:5059:22: warning: unused variable ‘igvp’ [-Wunused-variable]
 5059 |   IngGenomeViewerPtr igvp=NULL;
      |                      ^~~~
ingenwin.c: In function ‘Ing_PrintCompProteins’:
ingenwin.c:5146:32: warning: unused variable ‘str2’ [-Wunused-variable]
 5146 |   Char       str1[200] = {""}, str2[10] = {""};
      |                                ^~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5282:14: warning: variable ‘ARROW’ set but not used [-Wunused-but-set-variable]
 5282 |   Uint1      ARROW=NO_ARROW;
      |              ^~~~~
ingenwin.c:5279:14: warning: unused variable ‘stringwidth’ [-Wunused-variable]
 5279 |   Int4       stringwidth = 0;
      |              ^~~~~~~~~~~
ingenwin.c:5277:14: warning: unused variable ‘left’ [-Wunused-variable]
 5277 |   Int4       left = 10;
      |              ^~~~
ingenwin.c:5276:14: warning: variable ‘prim’ set but not used [-Wunused-but-set-variable]
 5276 |   PrimitivE  prim;
      |              ^~~~
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5596:14: warning: unused variable ‘strErr’ [-Wunused-variable]
 5596 |   Char       strErr[50]={""};
      |              ^~~~~~
ingenwin.c: In function ‘Ing_GetFromNetwork’:
ingenwin.c:7518:11: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7518 |   Char    szAppName  [10]={"Ingenue"};
      |           ^~~~~~~~~
ingenwin.c: In function ‘Ing_SetupMainWindow’:
ingenwin.c:7761:16: warning: unused variable ‘szAppName’ [-Wunused-variable]
 7761 | Char           szAppName [10]={"Ingenue"};
      |                ^~~~~~~~~
ingenwin.c:7760:48: warning: unused variable ‘str2’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                                ^~~~
ingenwin.c:7760:33: warning: unused variable ‘str1’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                                 ^~~~
ingenwin.c:7760:16: warning: unused variable ‘title’ [-Wunused-variable]
 7760 | Char           title[100]={""}, str1[20]={""}, str2[20]={""};
      |                ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/ingenwin.h:60,
                 from ingenwin.c:45:
ingenwin.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ingenwin.h:61,
                 from ingenwin.c:45:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ingenwin.c:7552:13: warning: ‘Ing_ItemtoNetwork’ defined but not used [-Wunused-function]
 7552 | static void Ing_ItemtoNetwork(IteM i){
      |             ^~~~~~~~~~~~~~~~~
ingenwin.c:6717:13: warning: ‘Ing_BspListProc’ defined but not used [-Wunused-function]
 6717 | static void Ing_BspListProc(IteM i)
      |             ^~~~~~~~~~~~~~~
ingenwin.c:5535:16: warning: ‘Ing_KeywordAlreadyInList’ defined but not used [-Wunused-function]
 5535 | static Boolean Ing_KeywordAlreadyInList (ValNodePtr head, CharPtr kwd)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1869:16: warning: ‘Ing_DeSelectPrim’ defined but not used [-Wunused-function]
 1869 | static Boolean Ing_DeSelectPrim (SegmenT seg, PrimitivE prim, Uint2 segID, Uint2 primID, Uint2 primCt, VoidPtr userdata)
      |                ^~~~~~~~~~~~~~~~
ingenwin.c:1610:18: warning: ‘Ing_OldMakeLocListFromSAP’ defined but not used [-Wunused-function]
 1610 | static SeqLocPtr Ing_OldMakeLocListFromSAP(SeqAlignPtr sap)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:1487:23: warning: ‘Ing_OldGetAlignmentIntervals’ defined but not used [-Wunused-function]
 1487 | static IngIvalInfoPtr Ing_OldGetAlignmentIntervals (SeqAlignPtr sap, Int4 from_row, Int4 to_row, Int4 from, Int4 to, Uint1 strand)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from ingenwin.c:45:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
ingenwin.c: In function ‘Ing_ReplaceMismatchedProc’:
ingenwin.c:4902:3: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4902 |   Ing_ReplaceAllMismatchedInLocation(igvp, rmp->sap, start, stop, GetStatus(rmp->all), GetStatus(rmp->gaps), GetStatus(rmp->inserts));
      |   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:4902:3: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
ingenwin.c: In function ‘Ing_SearchOK’:
ingenwin.c:7355:22: warning: ‘%s’ directive writing up to 254 bytes into a region of size 50 [-Wformat-overflow=]
 7355 |     sprintf(strErr, "%s was not found in record", str);
      |                      ^~                           ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 279 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_AnnotateAlignmentForm’:
ingenwin.c:6113:30: warning: ‘%s’ directive writing up to 99 bytes into a region of size 94 [-Wformat-overflow=]
 6113 |     sprintf(buf_mrna, "from: %s", str_mrna);
      |                              ^~   ~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 106 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:6117:27: warning: ‘%s’ directive writing up to 99 bytes into a region of size 96 [-Wformat-overflow=]
 6117 |     sprintf(buf_gen, "to: %s", str_gen);
      |                           ^~   ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 104 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_PropagateReport’:
ingenwin.c:5353:17: warning: ‘%s’ directive writing up to 299 bytes into a region of size 255 [-Wformat-overflow=]
 5353 |   sprintf(str, "%s", pfp->name);
      |                 ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 300 bytes into a destination of size 255
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:5229:37: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5229 |     for (i = last_pos; i <= exit; i += nchars_row){
      |                                   ~~^~~~~~~~~~~~~
ingenwin.c:5137:17: note: ‘j’ was declared here
 5137 |   Int4       i, j, k, row;
      |                 ^
ingenwin.c: In function ‘Ing_DoPropagate’:
ingenwin.c:5625:26: warning: ‘ already exists. Do you stil...’ directive writing 51 bytes into a region of size between 1 and 300 [-Wformat-overflow=]
 5625 |     sprintf (str_buf, "%s already exists. Do you still want to propagate it?", pfp->name);
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 52 and 351 bytes into a destination of size 300
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_FileOpenSpecial’:
ingenwin.c:3290:13: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3290 |    slp_list=Ing_MakeSlpList(NULL, n/2, ivals, strand, igvp->bsp->id);
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c:3255:17: note: ‘strand’ was declared here
 3255 |    Uint1        strand;
      |                 ^~~~~~
ingenwin.c: In function ‘Ing_FindMotif’:
ingenwin.c:1145:17: warning: ‘%s’ directive writing up to 99 bytes into a region of size 50 [-Wformat-overflow=]
 1145 |   sprintf(str, "%s", motif);
      |                 ^~   ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn2ff.h:113,
                 from ../include/ingenwin.h:58,
                 from ingenwin.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 100 bytes into a destination of size 50
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ingenwin.c: In function ‘Ing_KozakProc’:
ingenwin.c:1048:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1048 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1006:22: note: ‘ReportW’ was declared here
 1006 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_SignalPeptideProc’:
ingenwin.c:1099:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1099 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:1057:22: note: ‘ReportW’ was declared here
 1057 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_RepeatsProc’:
ingenwin.c:997:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  997 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:955:22: note: ‘ReportW’ was declared here
  955 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_PolyAProc’:
ingenwin.c:946:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  946 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:904:22: note: ‘ReportW’ was declared here
  904 |   WindoW             ReportW;
      |                      ^~~~~~~
ingenwin.c: In function ‘Ing_CpGProc’:
ingenwin.c:895:6: warning: ‘ans’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  895 |   if (ans == ANS_NO)
      |      ^
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from ../include/ingenwin.h:64,
                 from ingenwin.c:45:
../include/vibdefns.h:476:16: warning: ‘ReportW’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  476 | #define Select Nlm_Select
      |                ^~~~~~~~~~
ingenwin.c:857:22: note: ‘ReportW’ was declared here
  857 |   WindoW             ReportW;
      |                      ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF macrodlg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objseq.h:48,
                 from macrodlg.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
macrodlg.c: In function ‘ExistingTextDialog’:
macrodlg.c:1959:22: warning: variable ‘ppt’ set but not used [-Wunused-but-set-variable]
 1959 |   PrompT             ppt;
      |                      ^~~
macrodlg.c: In function ‘EndDistanceToDialog’:
macrodlg.c:3076:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3076 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:3082:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3082 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:3088:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 3088 |         sprintf (buf, "%d", v->data.intvalue);
      |                        ~^   ~~~~~~~~~~~~~~~~
      |                         |          |
      |                         int        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c: In function ‘SourceQualChoiceDialog’:
macrodlg.c:3757:48: warning: variable ‘b4’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                                ^~
macrodlg.c:3757:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                     ^~
macrodlg.c:3757:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                                 ^~
macrodlg.c:3757:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3757 |   ButtoN                    b1, b2, b3 = NULL, b4 = NULL;
      |                             ^~
macrodlg.c: In function ‘SourceConstraintDialog’:
macrodlg.c:3995:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:3995:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:3995:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 3995 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘CDSGeneProtQualConstraintDialog’:
macrodlg.c:4309:37: warning: variable ‘b3’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                     ^~
macrodlg.c:4309:33: warning: variable ‘b2’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                                 ^~
macrodlg.c:4309:29: warning: variable ‘b1’ set but not used [-Wunused-but-set-variable]
 4309 |   ButtoN                    b1, b2, b3;
      |                             ^~
macrodlg.c: In function ‘QuantityConstraintToDialog’:
macrodlg.c:7368:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7368 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c:7373:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7373 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c:7378:21: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
 7378 |     sprintf (buf, "%d", vnp->data.intvalue);
      |                    ~^   ~~~~~~~~~~~~~~~~~~
      |                     |            |
      |                     int          Nlm_Int8 {aka long int}
      |                    %ld
macrodlg.c: In function ‘TestApplyActionDialog’:
macrodlg.c:12965:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
12965 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestEditActionDialog’:
macrodlg.c:13170:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13170 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘TestRemoveOutsideActionDialog’:
macrodlg.c:13328:8: warning: variable ‘field_type’ set but not used [-Wunused-but-set-variable]
13328 |   Int2 field_type = 0;
      |        ^~~~~~~~~~
macrodlg.c: In function ‘ApplyFeatureActionToDialog’:
macrodlg.c:15186:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15186 |         sprintf (num, "%d^", action->location->data.intvalue);
      |                        ~^    ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                          |
      |                         int                        Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c:15188:25: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
15188 |         sprintf (num, "%d", action->location->data.intvalue + 1);
      |                        ~^   ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
      |                         |                                   |
      |                         int                                 Nlm_Int8 {aka long int}
      |                        %ld
macrodlg.c: In function ‘AddMacroActions’:
macrodlg.c:20523:25: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
20523 |   Boolean               rval = FALSE;
      |                         ^~~~
macrodlg.c: In function ‘PointerToSampleDialog’:
macrodlg.c:20659:19: warning: variable ‘max_char_per_line’ set but not used [-Wunused-but-set-variable]
20659 |   Int4            max_char_per_line;
      |                   ^~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘SampleDialogCopy’:
macrodlg.c:20779:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
macrodlg.c:20779:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
20779 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
macrodlg.c: In function ‘SingleMacroAcceptButton’:
macrodlg.c:22071:33: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                                 ^~~~~~~~~~~~
macrodlg.c:22071:21: warning: variable ‘num_fields’ set but not used [-Wunused-but-set-variable]
22071 |   Int4              num_fields, num_features;
      |                     ^~~~~~~~~~
macrodlg.c: In function ‘LaunchMacroTemplateEditor’:
macrodlg.c:23785:23: warning: variable ‘bfp’ set but not used [-Wunused-but-set-variable]
23785 |   BaseFormPtr         bfp;
      |                       ^~~
macrodlg.c: In function ‘SearchFuncToDialog’:
macrodlg.c:25755:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
25755 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long int}
      |                      %ld
macrodlg.c:25776:23: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
25776 |       sprintf (buf, "%d", func->data.intvalue);
      |                      ~^   ~~~~~~~~~~~~~~~~~~~
      |                       |             |
      |                       int           Nlm_Int8 {aka long int}
      |                      %ld
At top level:
macrodlg.c:20095:13: warning: ‘ChangeMacroActionPopup’ defined but not used [-Wunused-function]
20095 | static void ChangeMacroActionPopup (LisT t)
      |             ^~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:20038:13: warning: ‘GetPopupChoiceForActionChoice’ defined but not used [-Wunused-function]
20038 | static Int2 GetPopupChoiceForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19715:13: warning: ‘GetCategoryForActionChoice’ defined but not used [-Wunused-function]
19715 | static Int2 GetCategoryForActionChoice (Uint1 action_choice)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c:19698:14: warning: ‘GetActionChoiceForCategoryPopupChoice’ defined but not used [-Wunused-function]
19698 | static Uint1 GetActionChoiceForCategoryPopupChoice (Int2 category, Int2 popup_choice)
      |              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
macrodlg.c: In function ‘ActionToSingleMacroActionForm’:
macrodlg.c:22216:25: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22216 |   Int2                  val, i;
      |                         ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF biosrc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/biosrc.h:48,
                 from biosrc.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
biosrc.c: In function ‘CreateSimpleBioSourceDialog’:
biosrc.c:2455:18: warning: variable ‘indexerVersion’ set but not used [-Wunused-but-set-variable]
 2455 |   Boolean        indexerVersion;
      |                  ^~~~~~~~~~~~~~
biosrc.c: In function ‘CreateBioSourceDialog’:
biosrc.c:3615:18: warning: variable ‘y’ set but not used [-Wunused-but-set-variable]
 3615 |   PrompT         y;
      |                  ^
At top level:
biosrc.c:3291:26: warning: ‘EnumListFromQualNameAssoc’ defined but not used [-Wunused-function]
 3291 | static EnumFieldAssocPtr EnumListFromQualNameAssoc (Nlm_QualNameAssocPtr qp)
      |                          ^~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:3100:16: warning: ‘SubsourceDialogToSubSourcePtr’ defined but not used [-Wunused-function]
 3100 | static Pointer SubsourceDialogToSubSourcePtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2677:13: warning: ‘SubSourcePtrToSubsourceDialog’ defined but not used [-Wunused-function]
 2677 | static void SubSourcePtrToSubsourceDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2617:16: warning: ‘OrgmodDialogToOrgModPtr’ defined but not used [-Wunused-function]
 2617 | static Pointer OrgmodDialogToOrgModPtr (DialoG d)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
biosrc.c:2568:13: warning: ‘OrgModPtrToOrgmodDialog’ defined but not used [-Wunused-function]
 2568 | static void OrgModPtrToOrgmodDialog (DialoG d, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cdrgn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/cdrgn.h:89,
                 from cdrgn.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdrgn.c: In function ‘SetBestProteinFeature’:
cdrgn.c:1003:21: warning: unused variable ‘prp’ [-Wunused-variable]
 1003 |     ProtRefPtr      prp;
      |                     ^~~
cdrgn.c: In function ‘CdRegionPtrToForm’:
cdrgn.c:1050:19: warning: unused variable ‘vnp’ [-Wunused-variable]
 1050 |   ValNodePtr      vnp;
      |                   ^~~
cdrgn.c: In function ‘ProductToSeqLocPtr’:
cdrgn.c:1293:19: warning: variable ‘rfp’ set but not used [-Wunused-but-set-variable]
 1293 |   RnaFormPtr      rfp = NULL;
      |                   ^~~
cdrgn.c: In function ‘CreateCodeBreakAlist’:
cdrgn.c:1926:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1926 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘CodeBreakPtrToCodeBreakDialog’:
cdrgn.c:1977:19: warning: variable ‘aa’ set but not used [-Wunused-but-set-variable]
 1977 |   Uint1           aa;
      |                   ^~
cdrgn.c: In function ‘PopulateAAPopup’:
cdrgn.c:7041:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 7041 |   Uint1            first;
      |                    ^~~~~
cdrgn.c: In function ‘RnaRefPtrToForm’:
cdrgn.c:7557:17: warning: unused variable ‘is_iMet’ [-Wunused-variable]
 7557 |   Boolean       is_iMet = FALSE;
      |                 ^~~~~~~
cdrgn.c:7556:17: warning: unused variable ‘is_fMet’ [-Wunused-variable]
 7556 |   Boolean       is_fMet = FALSE;
      |                 ^~~~~~~
At top level:
cdrgn.c:6851:13: warning: ‘ConvertRnaRefNameToProductQual’ defined but not used [-Wunused-function]
 6851 | static void ConvertRnaRefNameToProductQual (SeqFeatPtr sfp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6789:13: warning: ‘RemoveQualByName’ defined but not used [-Wunused-function]
 6789 | static void RemoveQualByName (SeqFeatPtr sfp, CharPtr qual_name)
      |             ^~~~~~~~~~~~~~~~
cdrgn.c:6770:18: warning: ‘FindOrAddQual’ defined but not used [-Wunused-function]
 6770 | static GBQualPtr FindOrAddQual (SeqFeatPtr sfp, CharPtr qual_name)
      |                  ^~~~~~~~~~~~~
cdrgn.c:6323:15: warning: ‘CreateMrnaUserObjectDialog’ defined but not used [-Wunused-function]
 6323 | static DialoG CreateMrnaUserObjectDialog (GrouP h, CharPtr label, SeqEntryPtr sep, BaseFormPtr bfp)
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~
cdrgn.c:6246:14: warning: ‘check_rna_type’ defined but not used [-Wunused-function]
 6246 | static Uint1 check_rna_type (Uint1 type)
      |              ^~~~~~~~~~~~~~
cdrgn.c:3183:13: warning: ‘SetComment’ defined but not used [-Wunused-function]
 3183 | static void SetComment (CharPtr new_comment, WindoW w)
      |             ^~~~~~~~~~
cdrgn.c:2149:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
 2149 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cdrgn.c:961:13: warning: ‘FormToProtRef’ defined but not used [-Wunused-function]
  961 | static void FormToProtRef(CdRgnFormPtr cfp, ProtRefPtr prp)
      |             ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF import.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
import.c:3776:22: warning: ‘kDoNotEditTitle’ initialized and declared ‘extern’
 3776 | extern const CharPtr kDoNotEditTitle = "You are manually editing a title. If you continue, the title will not be automatically updated if the taxonomy information changes. Are you sure you want to do this? It is a very bad idea.";
      |                      ^~~~~~~~~~~~~~~
import.c: In function ‘ExpandSecondaries’:
import.c:3394:30: warning: ‘%*ld’ directive writing between 1 and 32768 bytes into a region of size 32 [-Wformat-overflow=]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                              ^~~~
import.c:3394:29: note: directive argument in the range [-2147483648, 2147483647]
 3394 |           sprintf (numbers, "%*ld", digits, (long) idx);
      |                             ^~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/import.h:48,
                 from import.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 32769 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pubdesc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pubdesc.c: In function ‘MakeReplaceAuthorsForm’:
pubdesc.c:4303:24: warning: variable ‘pepp’ set but not used [-Wunused-but-set-variable]
 4303 |   PubdescEditProcsPtr  pepp;
      |                        ^~~~
pubdesc.c: In function ‘DisplayDocSum’:
pubdesc.c:4865:9: warning: variable ‘lineheight’ set but not used [-Wunused-but-set-variable]
 4865 |   Int2  lineheight;
      |         ^~~~~~~~~~
At top level:
pubdesc.c:5377:13: warning: ‘Quit’ defined but not used [-Wunused-function]
 5377 | static void Quit (ButtoN b)
      |             ^~~~
pubdesc.c:5113:14: warning: ‘AddAll’ defined but not used [-Wunused-function]
 5113 | static  void AddAll(Entrez2RequestPtr e2rp, CharPtr term, Boolean is_1st)
      |              ^~~~~~
pubdesc.c: In function ‘QueryFromForm’:
pubdesc.c:5096:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5096 |       sprintf (year_buf, "%d", year - 1);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5099:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5099 |       sprintf (year_buf, "%d", year);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pubdesc.c:5102:29: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 5102 |       sprintf (year_buf, "%d", year + 1);
      |                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/pubdesc.h:48,
                 from pubdesc.c:44:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 11 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsub.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from ../include/seqsub.h:58,
                 from seqsub.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsub.c: In function ‘SeqSubmitFromTemplateEditor’:
seqsub.c:3250:20: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 3250 |   ObjMgrDataPtr    omdp;
      |                    ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mapgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mapgene.c: In function ‘load_new_align’:
mapgene.c:79:17: warning: variable ‘match_slp’ set but not used [-Wunused-but-set-variable]
   79 |  SeqLocPtr slp, match_slp, t_slp;
      |                 ^~~~~~~~~
mapgene.c: In function ‘figure_loc_by_position’:
mapgene.c:1039:20: warning: variable ‘center’ set but not used [-Wunused-but-set-variable]
 1039 |  Int4 start, stop, center;
      |                    ^~~~~~
mapgene.c: In function ‘cvt_loc_for_single_gene’:
mapgene.c:1958:29: warning: variable ‘p_align_offset’ set but not used [-Wunused-but-set-variable]
 1958 |  Int4 offset, align_offset, p_align_offset;
      |                             ^~~~~~~~~~~~~~
mapgene.c:1957:7: warning: unused variable ‘shift’ [-Wunused-variable]
 1957 |  Int4 shift = 0;
      |       ^~~~~
mapgene.c: In function ‘print_header_for_center’:
mapgene.c:2693:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 2693 |  CharPtr link;
      |          ^~~~
mapgene.c: In function ‘PrintGeneticMarkerForOneMap’:
mapgene.c:3635:10: warning: variable ‘link’ set but not used [-Wunused-but-set-variable]
 3635 |  CharPtr link;
      |          ^~~~
At top level:
mapgene.c:3207:16: warning: ‘convert_center_name_to_gifname’ defined but not used [-Wunused-function]
 3207 | static Boolean convert_center_name_to_gifname (CharPtr center_name, CharPtr gif_name)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c:1788:13: warning: ‘adjust_slp_list’ defined but not used [-Wunused-function]
 1788 | static void adjust_slp_list(ValNodePtr slp_list)
      |             ^~~~~~~~~~~~~~~
mapgene.c:1748:16: warning: ‘merge_slp_list’ defined but not used [-Wunused-function]
 1748 | static Boolean merge_slp_list(ValNodePtr PNTR gene_slp_list, ValNodePtr slp_list)
      |                ^~~~~~~~~~~~~~
mapgene.c:1280:13: warning: ‘change_anchor_to_front’ defined but not used [-Wunused-function]
 1280 | static void change_anchor_to_front(ValNodePtr msp_list, SeqIdPtr anchor_id)
      |             ^~~~~~~~~~~~~~~~~~~~~~
mapgene.c:200:13: warning: ‘get_center_pointer’ defined but not used [-Wunused-function]
  200 | static Int4 get_center_pointer(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~~~~~~
mapgene.c:27:13: warning: ‘print_this_id’ defined but not used [-Wunused-function]
   27 | static void print_this_id (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~
mapgene.c: In function ‘PrintHTMLContigAlign.isra.0’:
mapgene.c:2798:30: warning: ‘%s’ directive writing up to 30 bytes into a region of size 25 [-Wformat-overflow=]
 2798 |    sprintf(link_name, "CONTIG%s", alpha_name);
      |                              ^~   ~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from mapgene.c:2:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 37 bytes into a destination of size 31
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mapgene.c: In function ‘PrintContigForOneMap’:
mapgene.c:3152:7: warning: ‘yac_num’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3152 |  Int4 yac_num;
      |       ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prtgene.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prtgene.c: In function ‘print_sfp_ext’:
prtgene.c:108:6: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  108 |      if(ufp->choice == 2) /*integer */
      |      ^~
prtgene.c:110:7: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  110 |       print_store_buf(temp, buf, buf_size, &len, fp);
      |       ^~~~~~~~~~~~~~~
prtgene.c: In function ‘print_store_for_html’:
prtgene.c:749:7: warning: variable ‘white_sp’ set but not used [-Wunused-but-set-variable]
  749 |  Char white_sp;
      |       ^~~~~~~~
prtgene.c: In function ‘PrintSequenceToFile.isra.0’:
prtgene.c:950:28: warning: ‘ (bp) on the genome’ directive writing 19 bytes into a region of size between 16 and 96 [-Wformat-overflow=]
  950 |    sprintf(temp, ": %s - %s (bp) on the genome", temp_1, temp_2);
      |                            ^~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/tofile.h:66,
                 from ../include/prtgene.h:3,
                 from prtgene.c:1:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 105 bytes into a destination of size 101
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbidesk.a
ar cru libncbidesk.a drawseq.o dotmatrx.o fea2seg.o fstyle.o smdlg1.o smdlg2.o smdlg3.o smtools.o styleman.o stylemui.o glbpic.o layout.o saldist.o saled.o salfiles.o salpanel.o salparam.o salsa.o seqfltr.o seqgraph.o seqgrphx.o seqmtrx.o seqpcc.o seqanal.o aacomp.o seqscrl.o valdlg.o vsm.o vsmfile.o vsmutil.o udvgraph.o udvopen.o udvpanel.o dotvibrant.o dlgutil1.o dlgutil2.o e2trmlst.o e2docsum.o asn2graphic.o medview.o bspview.o gbfview.o gphview.o gphdraw.o gxydraw.o gtrdraw.o seqpanel.o ingengraph.o ingenext.o ingenwin.o macrodlg.o biosrc.o cdrgn.o import.o pubdesc.o seqsub.o mapgene.o prtgene.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbidesk.a ../lib
ranlib ../lib/libncbidesk.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvclick.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvclick.c:248:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg_OLD’:
ddvclick.c:979:13: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
  979 | Boolean     bDeselectAll=TRUE;
      |             ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_SendBSPSelectMsg’:
ddvclick.c:1090:18: warning: variable ‘bDeselectAll’ set but not used [-Wunused-but-set-variable]
 1090 |   Boolean        bDeselectAll=TRUE;
      |                  ^~~~~~~~~~~~
ddvclick.c: In function ‘DDV_DragProc’:
ddvclick.c:2013:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2013 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
ddvclick.c: In function ‘DDV_HoldProc’:
ddvclick.c:2494:13: warning: unused variable ‘Scroll’ [-Wunused-variable]
 2494 | Boolean     Scroll=FALSE;
      |             ^~~~~~
ddvclick.c:2490:13: warning: unused variable ‘cur_pgp’ [-Wunused-variable]
 2490 | ParaGPtr    cur_pgp=NULL;
      |             ^~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
ddvclick.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvclick.c:252:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1823:13: warning: ‘EraseOutline’ defined but not used [-Wunused-function]
 1823 | static void EraseOutline(PaneL p) {
      |             ^~~~~~~~~~~~
ddvclick.c:1811:16: warning: ‘RectanglesAreSame’ defined but not used [-Wunused-function]
 1811 | static Boolean RectanglesAreSame(RecT rc1, RecT rc2) {
      |                ^~~~~~~~~~~~~~~~~
ddvclick.c:970:13: warning: ‘DDV_SendBSPSelectMsg_OLD’ defined but not used [-Wunused-function]
  970 | static void DDV_SendBSPSelectMsg_OLD(DdvMainPtr dmp,Int4 bsp_coord,Int4 SeqAlign_coord,
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:611:13: warning: ‘DDV_GetSeqAlignCoordGivenCol’ defined but not used [-Wunused-function]
  611 | static Int4 DDV_GetSeqAlignCoordGivenCol(DdvMainPtr dmp, Int4 Disp_coord) {
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c: In function ‘DDV_GetSeqNameGivenRow’:
ddvclick.c:956:6: warning: ‘sip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  956 |   if (!sip)
      |      ^
ddvclick.c: In function ‘DDV_ReleaseProc’:
ddvclick.c:1127:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1127 |   slp = SeqLocIntNew (bsp_coord_start, bsp_coord_stop, direction, pgp->sip);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
ddvclick.c:1091:18: note: ‘pgp’ was declared here
 1091 |   ParaGPtr       pgp;
      |                  ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvgraph.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvgraph.c:210:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvgraph.c: In function ‘DDV_DrawSequence’:
ddvgraph.c:701:31: warning: unused variable ‘pos’ [-Wunused-variable]
  701 | Int2            decal=1,i,x,y,pos=0;
      |                               ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
ddvgraph.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ddvgraph.c:215:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvopen.c:372:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvopen.c: In function ‘DDV_GetAndCheckSeqAlign’:
ddvopen.c:1739:8: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1739 | Uint2  nRet=DVV_MSG_M_OK;
      |        ^~~~
ddvopen.c: In function ‘DDV_FOpenAcceptProc’:
ddvopen.c:1932:11: warning: variable ‘nRet’ set but not used [-Wunused-but-set-variable]
 1932 | Uint2     nRet=DVV_MSG_M_OK,The_entityID;
      |           ^~~~
ddvopen.c: In function ‘DDV_NetOpen_okProc’:
ddvopen.c:2141:8: warning: variable ‘AccessType’ set but not used [-Wunused-but-set-variable]
 2141 | Int2   AccessType,procval;
      |        ^~~~~~~~~~
ddvopen.c: In function ‘DDV_StartMainWin_Slave’:
ddvopen.c:2411:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 2411 |     else
      |     ^~~~
ddvopen.c:2417:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 2417 |  if (!w) return(NULL);
      |  ^~
ddvopen.c: In function ‘DDV_ImportBioseqDlg’:
ddvopen.c:2819:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 2819 |     ButtoN b;
      |            ^
ddvopen.c: In function ‘DDV_HideDlg’:
ddvopen.c:3135:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 3135 |     ButtoN b;
      |            ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from ddvopen.c:376:
ddvopen.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from ddvopen.c:376:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ddvopen.c:377:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvopen.c:2111:16: warning: ‘DDV_IsInt’ defined but not used [-Wunused-function]
 2111 | static Boolean DDV_IsInt(CharPtr szAccess)
      |                ^~~~~~~~~
ddvopen.c:1285:13: warning: ‘DDV_NoConvert’ defined but not used [-Wunused-function]
 1285 | static void DDV_NoConvert(ButtoN g) {
      |             ^~~~~~~~~~~~~
ddvopen.c:1272:13: warning: ‘DDV_Convert’ defined but not used [-Wunused-function]
 1272 | static void DDV_Convert(ButtoN g) {
      |             ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ddvpanel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvpanel.c:389:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvpanel.c: In function ‘DDV_CreateViewerPanel’:
ddvpanel.c:1177:8: warning: variable ‘cxChar’ set but not used [-Wunused-but-set-variable]
 1177 | Int2   cxChar,cyChar;
      |        ^~~~~~
ddvpanel.c: In function ‘DDV_DispStyles_OkProc’:
ddvpanel.c:1543:21: warning: unused variable ‘szBuf’ [-Wunused-variable]
 1543 | Char                szBuf[15]={""};
      |                     ^~~~~
ddvpanel.c: In function ‘DDV_ExportTexte’:
ddvpanel.c:2799:40: warning: variable ‘browse’ set but not used [-Wunused-but-set-variable]
 2799 | ButtoN        chk2,chk3,chk4,chk5,chk6,browse,ok;
      |                                        ^~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
ddvpanel.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/ddvopen.h:140,
                 from ../include/ddvmain.h:202,
                 from ../include/ddvpanel.h:150,
                 from ddvpanel.c:392:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3377:13: warning: ‘write_annot’ defined but not used [-Wunused-function]
 3377 | static void write_annot(SeqAlignPtr align)
      |             ^~~~~~~~~~~
ddvpanel.c:3296:13: warning: ‘DDV_MoveRightBoundaryRight’ defined but not used [-Wunused-function]
 3296 | static void DDV_MoveRightBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3290:13: warning: ‘DDV_MoveRightBoundaryLeft’ defined but not used [-Wunused-function]
 3290 | static void DDV_MoveRightBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3284:13: warning: ‘DDV_MoveLeftBoundaryRight’ defined but not used [-Wunused-function]
 3284 | static void DDV_MoveLeftBoundaryRight(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3278:13: warning: ‘DDV_MoveLeftBoundaryLeft’ defined but not used [-Wunused-function]
 3278 | static void DDV_MoveLeftBoundaryLeft(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
ddvpanel.c:3272:13: warning: ‘DDV_MoveRowRight’ defined but not used [-Wunused-function]
 3272 | static void DDV_MoveRowRight(IteM i)
      |             ^~~~~~~~~~~~~~~~
ddvpanel.c:3266:13: warning: ‘DDV_MoveRowLeft’ defined but not used [-Wunused-function]
 3266 | static void DDV_MoveRowLeft(IteM i)
      |             ^~~~~~~~~~~~~~~
ddvpanel.c:3024:13: warning: ‘DDV_DeleteRow’ defined but not used [-Wunused-function]
 3024 | static void DDV_DeleteRow(IteM i)
      |             ^~~~~~~~~~~~~
ddvpanel.c: In function ‘DDV_SortPGPLineNum’:
ddvpanel.c:2441:9: warning: ‘pgp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2441 |   n+=pgp->nLines;
      |      ~~~^~~~~~~~
rm -f libddvlib.a
ar cru libddvlib.a ddvclick.o ddvgraph.o ddvopen.o ddvpanel.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libddvlib.a ../lib
ranlib ../lib/libddvlib.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF corematx.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from corematx.c:135:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dvncode.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from dvncode.c:69:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb1.c: In function ‘BiostrucAsnRead’:
objmmdb1.c:90:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   90 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucIdFree’:
objmmdb1.c:323:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  323 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:358:12: warning: unused variable ‘isError’ [-Wunused-variable]
  358 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucSetAsnRead’:
objmmdb1.c:547:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  547 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucAnnotSetAsnRead’:
objmmdb1.c:716:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  716 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetAsnRead’:
objmmdb1.c:885:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  885 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiostrucDescrFree’:
objmmdb1.c:1015:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1015 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1059:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1059 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucHistoryAsnRead’:
objmmdb1.c:1270:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1270 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1269:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1269 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucReplaceAsnRead’:
objmmdb1.c:1450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1450 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:1449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseFree’:
objmmdb1.c:1618:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1618 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1652:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1652 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘VersionOfDatabase_version_of_databaseAsnRead’:
objmmdb1.c:1753:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1753 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphAsnRead’:
objmmdb1.c:2001:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2001 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘BiomolDescrFree’:
objmmdb1.c:2139:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2139 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2189:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2189 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphAsnRead’:
objmmdb1.c:2446:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2446 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘MoleculeGraphAsnRead’:
objmmdb1.c:2654:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2654 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘InterResidueBondAsnRead’:
objmmdb1.c:2856:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2856 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:2855:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2855 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueAsnRead’:
objmmdb1.c:3037:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3037 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3036:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3036 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrFree’:
objmmdb1.c:3177:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3177 |    Pointer pnt;
      |            ^~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3212:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3212 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucGraphPntrAsnRead’:
objmmdb1.c:3399:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3399 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3398:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3398 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘BiostrucResidueGraphSetPntrAsnRead’:
objmmdb1.c:3565:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3565 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3564:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3564 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomAsnRead’:
objmmdb1.c:3732:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3732 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c: In function ‘IntraResidueBondAsnRead’:
objmmdb1.c:3924:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3924 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:3923:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3923 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘ChiralCenterAsnRead’:
objmmdb1.c:4097:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4097 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4096:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4096 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrAsnRead’:
objmmdb1.c:4286:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4286 |    AsnReadFunc func;
      |                ^~~~
objmmdb1.c:4285:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4285 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb1.c: In function ‘AtomPntrSetAsnRead’:
objmmdb1.c:4441:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4441 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb1.c:5:
objmmdb1.c: At top level:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb1.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb1.c: In function ‘BiostrucIdAsnRead’:
objmmdb1.c:411:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  411 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucDescrAsnRead’:
objmmdb1.c:1126:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1126 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiomolDescrAsnRead’:
objmmdb1.c:2284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c: In function ‘BiostrucSourceAsnRead’:
objmmdb1.c:1802:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1802 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb1.c:1752:10: note: ‘choice’ was declared here
 1752 |    Uint1 choice;
      |          ^~~~~~
objmmdb1.c: In function ‘ResidueGraphPntrAsnRead’:
objmmdb1.c:3265:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3265 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb2.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb2.c: In function ‘BiostrucModelAsnRead’:
objmmdb2.c:88:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   88 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelDescrFree’:
objmmdb2.c:242:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  242 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:289:12: warning: unused variable ‘isError’ [-Wunused-variable]
  289 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ModelSpaceAsnRead’:
objmmdb2.c:512:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  512 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:511:12: warning: unused variable ‘isError’ [-Wunused-variable]
  511 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Coordinates_coordinatesFree’:
objmmdb2.c:709:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  709 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:743:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  743 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Coordinates_coordinatesAsnRead’:
objmmdb2.c:831:12: warning: unused variable ‘isError’ [-Wunused-variable]
  831 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘ReferenceFrameAsnRead’:
objmmdb2.c:1063:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1063 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1062:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1062 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘CoordinatesFree’:
objmmdb2.c:1193:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1193 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1231:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1231 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicCoordinatesAsnRead’:
objmmdb2.c:1420:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1420 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘Surface_surfaceFree’:
objmmdb2.c:1640:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1640 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1686:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1686 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c:1685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘Surface_surfaceAsnRead’:
objmmdb2.c:1766:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1766 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘DensityCoordinatesAsnRead’:
objmmdb2.c:2030:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2030 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ModelSpacePointsAsnRead’:
objmmdb2.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsFree’:
objmmdb2.c:2404:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2404 |    Pointer pnt;
      |            ^~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2439:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2439 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmmdb2.c: In function ‘AtomicOccupanciesAsnRead’:
objmmdb2.c:2615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2615 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AlternateConformationIdsAsnRead’:
objmmdb2.c:2760:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2760 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘ConformationEnsembleAsnRead’:
objmmdb2.c:2890:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2890 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘IsotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3054:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3054 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘AnisotropicTemperatureFactorsAsnRead’:
objmmdb2.c:3221:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3221 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TMeshAsnRead’:
objmmdb2.c:3426:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3426 |    AsnReadFunc func;
      |                ^~~~
objmmdb2.c: In function ‘TrianglesAsnRead’:
objmmdb2.c:3626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3626 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
objmmdb2.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb2.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from objmmdb2.c:5:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objmmdb2.c: In function ‘ModelDescrAsnRead’:
objmmdb2.c:366:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  366 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘CoordinatesAsnRead’:
objmmdb2.c:1281:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1281 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘AtomicTemperatureFactorsAsnRead’:
objmmdb2.c:2485:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2485 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c: In function ‘ModelCoordinateSetAsnRead’:
objmmdb2.c:877:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  877 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:830:10: note: ‘choice’ was declared here
  830 |    Uint1 choice;
      |          ^~~~~~
objmmdb2.c: In function ‘SurfaceCoordinatesAsnRead’:
objmmdb2.c:1828:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1828 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb2.c:1765:10: note: ‘choice’ was declared here
 1765 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmmdb3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmmdb3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetAsnRead’:
objmmdb3.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphPntrsFree’:
objmmdb3.c:220:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  220 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AtomPntrsAsnRead’:
objmmdb3.c:443:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  443 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphAlignmentAsnRead’:
objmmdb3.c:626:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  626 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ChemGraphInteractionAsnRead’:
objmmdb3.c:824:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  824 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘SphereAsnRead’:
objmmdb3.c:1024:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1024 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ConeAsnRead’:
objmmdb3.c:1192:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1192 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CylinderAsnRead’:
objmmdb3.c:1372:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1372 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BrickAsnRead’:
objmmdb3.c:1557:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1557 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransformAsnRead’:
objmmdb3.c:1796:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1796 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrFree’:
objmmdb3.c:1921:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1921 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘Location_locationFree’:
objmmdb3.c:2161:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2161 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2206:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2206 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘Property_propertyFree’:
objmmdb3.c:2722:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2722 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘ColorPropAsnRead’:
objmmdb3.c:2798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2798 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘CameraAsnRead’:
objmmdb3.c:2986:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2986 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptAsnRead’:
objmmdb3.c:3171:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3171 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3330:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3330 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionSimilarityAsnRead’:
objmmdb3.c:3648:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3648 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘OtherFeatureAsnRead’:
objmmdb3.c:3825:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3825 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucMoleculePntrAsnRead’:
objmmdb3.c:3999:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3999 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoleculePntrsAsnRead’:
objmmdb3.c:4342:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4342 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueExplicitPntrsAsnRead’:
objmmdb3.c:4505:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4505 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ResidueIntervalPntrAsnRead’:
objmmdb3.c:4673:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4673 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionCoordinatesAsnRead’:
objmmdb3.c:4845:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4845 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RegionBoundaryFree’:
objmmdb3.c:4981:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4981 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘AlignStatsAsnRead’:
objmmdb3.c:5212:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5212 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘RealValueAsnRead’:
objmmdb3.c:5454:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5454 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘ModelSpacePointAsnRead’:
objmmdb3.c:5615:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5615 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘MoveFree’:
objmmdb3.c:5759:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 5759 |    Pointer pnt;
      |            ^~~
objmmdb3.c: In function ‘RotMatrixAsnRead’:
objmmdb3.c:5967:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5967 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘TransMatrixAsnRead’:
objmmdb3.c:6200:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6200 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘GLMatrixAsnRead’:
objmmdb3.c:6379:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6379 |    AsnReadFunc func;
      |                ^~~~
objmmdb3.c: In function ‘BiostrucScriptStepAsnRead’:
objmmdb3.c:6680:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6680 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
objmmdb3.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from objmmdb3.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from objmmdb3.c:5:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
objmmdb3.c: In function ‘ChemGraphPntrsAsnRead’:
objmmdb3.c:307:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  307 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘BiostrucFeatureSetDescrAsnRead’:
objmmdb3.c:2024:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2024 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘ResiduePntrsAsnRead’:
objmmdb3.c:4213:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4213 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionBoundaryAsnRead’:
objmmdb3.c:5075:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5075 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘MoveAsnRead’:
objmmdb3.c:5839:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5839 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c: In function ‘RegionPntrsAsnRead’:
objmmdb3.c:3464:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3464 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:3409:10: note: ‘choice’ was declared here
 3409 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c: In function ‘BiostrucFeatureAsnRead’:
objmmdb3.c:2691:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2691 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2626:10: note: ‘choice’ was declared here
 2626 |    Uint1 choice;
      |          ^~~~~~
objmmdb3.c:2370:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2370 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmmdb3.c:2308:10: note: ‘choice’ was declared here
 2308 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcn3d.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcn3d.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleDictionaryAsnRead’:
objcn3d.c:87:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   87 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationsAsnRead’:
objcn3d.c:251:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  251 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dColorAsnRead’:
objcn3d.c:415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  415 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:414:12: warning: unused variable ‘isError’ [-Wunused-variable]
  414 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneStyleAsnRead’:
objcn3d.c:605:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  605 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:604:12: warning: unused variable ‘isError’ [-Wunused-variable]
  604 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dGeneralStyleAsnRead’:
objcn3d.c:789:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  789 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:788:12: warning: unused variable ‘isError’ [-Wunused-variable]
  788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dBackboneLabelStyleAsnRead’:
objcn3d.c:972:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  972 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:971:12: warning: unused variable ‘isError’ [-Wunused-variable]
  971 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsAsnRead’:
objcn3d.c:1175:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1175 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1174:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1174 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dStyleSettingsSetAsnRead’:
objcn3d.c:1578:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1578 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dStyleTableItemAsnRead’:
objcn3d.c:1707:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1707 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1706:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1706 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dResidueRangeAsnRead’:
objcn3d.c:1872:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1872 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:1871:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1871 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dMoleculeLocationAsnRead’:
objcn3d.c:2035:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2035 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dObjectLocationAsnRead’:
objcn3d.c:2198:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2198 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dUserAnnotationAsnRead’:
objcn3d.c:2363:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2363 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c: In function ‘Cn3dGLMatrixAsnRead’:
objcn3d.c:2555:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2555 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2554:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2554 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dVectorAsnRead’:
objcn3d.c:2843:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2843 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:2842:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2842 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcn3d.c: In function ‘Cn3dViewSettingsAsnRead’:
objcn3d.c:3016:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3016 |    AsnReadFunc func;
      |                ^~~~
objcn3d.c:3015:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3015 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
objcn3d.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapcn3d.h:8,
                 from objcn3d.c:5:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi.c:116:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi.c: In function ‘MakeAModelstruc’:
mmdbapi.c:192:11: warning: unused variable ‘iCount’ [-Wunused-variable]
  192 |     Int4  iCount = 0;
      |           ^~~~~~
mmdbapi.c:189:11: warning: unused variable ‘pdnmsCount’ [-Wunused-variable]
  189 |     PDNMS pdnmsCount = NULL;
      |           ^~~~~~~~~~
mmdbapi.c: In function ‘AddPFBSelect’:
mmdbapi.c:532:11: warning: unused variable ‘pmsdStruc’ [-Wunused-variable]
  532 |     PMSD  pmsdStruc = NULL;
      |           ^~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi1.c: In function ‘FreeAtomicModelAsnLists’:
mmdbapi1.c:1037:21: warning: unused variable ‘pcoThis’ [-Wunused-variable]
 1037 |    CoordinatesPtr   pcoThis = NULL;
      |                     ^~~~~~~
mmdbapi1.c: In function ‘FetchBS’:
mmdbapi1.c:1242:13: warning: unused variable ‘bIsNetwork’ [-Wunused-variable]
 1242 |     Boolean bIsNetwork = FALSE;
      |             ^~~~~~~~~~
mmdbapi1.c: In function ‘FreeSurfaceModelAsnList’:
mmdbapi1.c:1627:16: warning: variable ‘pvnX’ set but not used [-Wunused-but-set-variable]
 1627 |     ValNodePtr pvnX = NULL;
      |                ^~~~
mmdbapi1.c: In function ‘MakeChemGraphNodeList’:
mmdbapi1.c:2343:16: warning: variable ‘pvnThis’ set but not used [-Wunused-but-set-variable]
 2343 |     ValNodePtr pvnThis = NULL;
      |                ^~~~~~~
mmdbapi1.c: In function ‘DoApplyTransform’:
mmdbapi1.c:2573:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2573 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘DoReverseTransform’:
mmdbapi1.c:2713:8: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2713 |   PMSD pmsdThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2860:8: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 2860 |   PSFS psfsThis = NULL;
      |        ^~~~~~~~
mmdbapi1.c:2859:22: warning: unused variable ‘pbsfThis’ [-Wunused-variable]
 2859 |   BiostrucFeaturePtr pbsfThis = NULL;
      |                      ^~~~~~~~
mmdbapi1.c:2855:9: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 2855 |   PMSD  pmsdThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:2978:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 2978 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:2967:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 2967 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3174:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3174 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3408:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 3408 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi1.c:3397:22: warning: unused variable ‘pbsf’ [-Wunused-variable]
 3397 |   BiostrucFeaturePtr pbsf=NULL;
      |                      ^~~~
mmdbapi1.c: In function ‘InstallAlignedSlave’:
mmdbapi1.c:3877:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3877 |    Int2 iTest;
      |         ^~~~~
mmdbapi1.c:3874:9: warning: unused variable ‘psfsThis’ [-Wunused-variable]
 3874 |    PSFS psfsThis = NULL;
      |         ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAddFeature’:
mmdbapi1.c:4184:11: warning: variable ‘ncbiVast’ set but not used [-Wunused-but-set-variable]
 4184 |   Boolean ncbiVast = FALSE;
      |           ^~~~~~~~
mmdbapi1.c:4182:11: warning: variable ‘pdbFootnote’ set but not used [-Wunused-but-set-variable]
 4182 |   Boolean pdbFootnote  = FALSE;
      |           ^~~~~~~~~~~
mmdbapi1.c:4181:11: warning: variable ‘pdbSite’ set but not used [-Wunused-but-set-variable]
 4181 |   Boolean pdbSite = FALSE;
      |           ^~~~~~~
mmdbapi1.c:4172:15: warning: unused variable ‘pdvnThis’ [-Wunused-variable]
 4172 |   DValNodePtr pdvnThis = NULL;
      |               ^~~~~~~~
mmdbapi1.c: In function ‘BiostrucAsnGet’:
mmdbapi1.c:5289:18: warning: variable ‘aop’ set but not used [-Wunused-but-set-variable]
 5289 |     AsnOptionPtr aop;
      |                  ^~~
mmdbapi1.c: In function ‘BiosToSeq’:
mmdbapi1.c:3083:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3083 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3127:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3127 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘fnPBSFtoPSA’:
mmdbapi1.c:3275:52: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3275 |     sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c: In function ‘BiostrToSeqAnnotSet’:
mmdbapi1.c:3515:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 3515 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from mmdbapi1.c:294:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi1.c:3559:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3559 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
mmdbapi1.c: In function ‘InstBSAnnotSet’:
mmdbapi1.c:2885:15: warning: ‘iMMDBId’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2885 |   pdnmsThis = FindLoadedBiostruc(NULL, iMMDBId);
      |               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi2.c:159:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi2.c: In function ‘GetAtomLocs’:
mmdbapi2.c:1471:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1471 |      if (pmadThis)
      |         ^
mmdbapi2.c: In function ‘AssignAtomLocId’:
mmdbapi2.c:1537:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1537 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignBackBone’:
mmdbapi2.c:1686:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1686 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignVirtual’:
mmdbapi2.c:1790:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1790 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘AssignIons’:
mmdbapi2.c:1846:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1846 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi2.c: In function ‘MolFromPDBChain’:
mmdbapi2.c:1931:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1931 |     Int2 iTest;
      |          ^~~~~
mmdbapi2.c: In function ‘SeqStringFromMol’:
mmdbapi2.c:1948:9: warning: unused variable ‘iTest’ [-Wunused-variable]
 1948 |    Int4 iTest =0;
      |         ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbapi3.c:207:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi3.c: In function ‘WritePDBHeader’:
mmdbapi3.c:840:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  840 |     if(org)
      |     ^~
mmdbapi3.c:845:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  845 |         src = orgstring;
      |         ^~~
mmdbapi3.c:840:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  840 |     if(org)
      |       ^
mmdbapi3.c: In function ‘WritePDBRemarks’:
mmdbapi3.c:1389:8: warning: unused variable ‘len’ [-Wunused-variable]
 1389 |    int len;
      |        ^~~
mmdbapi3.c:1388:9: warning: unused variable ‘pcThis’ [-Wunused-variable]
 1388 |    Char pcThis[81];
      |         ^~~~~~
mmdbapi3.c:1387:21: warning: unused variable ‘pbsdrLast’ [-Wunused-variable]
 1387 |    BiostrucDescrPtr pbsdrLast = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c:1386:21: warning: unused variable ‘pbsdrThis’ [-Wunused-variable]
 1386 |    BiostrucDescrPtr pbsdrThis = NULL;
      |                     ^~~~~~~~~
mmdbapi3.c: In function ‘WritePDBConnect’:
mmdbapi3.c:1610:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 1610 |    Int2 iTest;
      |         ^~~~~
mmdbapi3.c: In function ‘WritePDBModelList’:
mmdbapi3.c:1625:10: warning: variable ‘iCount’ set but not used [-Wunused-but-set-variable]
 1625 |     Int4 iCount;
      |          ^~~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2287:11: warning: unused variable ‘pcElName’ [-Wunused-variable]
 2287 |   CharPtr pcElName = NULL;
      |           ^~~~~~~~
mmdbapi3.c: In function ‘WriteFASTAMolecule’:
mmdbapi3.c:3537:9: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 3537 |    Int4 iTest =0;
      |         ^~~~~
mmdbapi3.c: In function ‘WriteKinAtom’:
mmdbapi3.c:2314:12: warning: ‘iTemp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2314 |         if (iTemp < TempsKine[(iIndex-1)]) return; /* too low */
      |            ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbapi4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mmdbapi4.c: In function ‘RefreshSurface’:
mmdbapi4.c:147:10: warning: unused variable ‘iVal’ [-Wunused-variable]
  147 |     Int4 iVal = 0;
      |          ^~~~
mmdbapi4.c: In function ‘FreeCoordinatesAsnLists’:
mmdbapi4.c:335:28: warning: variable ‘pdcThis’ set but not used [-Wunused-but-set-variable]
  335 |     DensityCoordinatesPtr  pdcThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c: In function ‘FreeRedundantAsn’:
mmdbapi4.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mmdbapi4.c:370:11: warning: unused variable ‘pdnmmThis’ [-Wunused-variable]
  370 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:367:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
  367 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘RefreshModelAsnMem’:
mmdbapi4.c:474:13: warning: unused variable ‘iCoordSets’ [-Wunused-variable]
  474 |     Int4    iCoordSets = 0;
      |             ^~~~~~~~~~
mmdbapi4.c:465:20: warning: unused variable ‘pappThis’ [-Wunused-variable]
  465 |     AtomPntrsPtr   pappThis = NULL;
      |                    ^~~~~~~~
mmdbapi4.c:464:27: warning: unused variable ‘pmspThis’ [-Wunused-variable]
  464 |     ModelSpacePointsPtr   pmspThis = NULL;
      |                           ^~~~~~~~
mmdbapi4.c:463:28: warning: unused variable ‘pocThis’ [-Wunused-variable]
  463 |     AtomicOccupanciesPtr   pocThis = NULL;
      |                            ^~~~~~~
mmdbapi4.c:458:34: warning: unused variable ‘paciThis’ [-Wunused-variable]
  458 |     AlternateConformationIdsPtr  paciThis = NULL;
      |                                  ^~~~~~~~
mmdbapi4.c: In function ‘RebuildChemGraphAsn’:
mmdbapi4.c:931:15: warning: unused variable ‘bOK’ [-Wunused-variable]
  931 |     Boolean   bOK = TRUE;
      |               ^~~
mmdbapi4.c: In function ‘WriteASNChemGraphOnly’:
mmdbapi4.c:1192:10: warning: unused variable ‘iHash’ [-Wunused-variable]
 1192 |     Int4 iHash = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘FreeSingleModel’:
mmdbapi4.c:1336:11: warning: unused variable ‘pdnml’ [-Wunused-variable]
 1336 |     PDNML pdnml = NULL;
      |           ^~~~~
mmdbapi4.c:1332:22: warning: unused variable ‘pbsmTemp’ [-Wunused-variable]
 1332 |     BiostrucModelPtr pbsmTemp = NULL;
      |                      ^~~~~~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1505:14: warning: unused variable ‘paioAIP’ [-Wunused-variable]
 1505 |     AsnIoPtr paioAIP = NULL;
      |              ^~~~~~~
mmdbapi4.c:1502:11: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1502 |     PMLD  pmldThis = NULL;
      |           ^~~~~~~~
mmdbapi4.c:1498:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1498 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
mmdbapi4.c:1496:22: warning: unused variable ‘pbsmThis’ [-Wunused-variable]
 1496 |     BiostrucModelPtr pbsmThis = NULL;
      |                      ^~~~~~~~
mmdbapi4.c:1495:17: warning: unused variable ‘pBSThis’ [-Wunused-variable]
 1495 |     BiostrucPtr pBSThis = NULL;
      |                 ^~~~~~~
mmdbapi4.c:1494:13: warning: unused variable ‘bFirst’ [-Wunused-variable]
 1494 |     Boolean bFirst = TRUE;
      |             ^~~~~~
mmdbapi4.c:1493:10: warning: unused variable ‘iTest’ [-Wunused-variable]
 1493 |     Int2 iTest = 0;
      |          ^~~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1741:19: warning: unused variable ‘loc1’ [-Wunused-variable]
 1741 |   ValNodePtr      loc1 = NULL;
      |                   ^~~~
mmdbapi4.c: In function ‘WriteAsnModelList’:
mmdbapi4.c:1632:13: warning: ‘bRet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1632 |      return bRet;
      |             ^~~~
mmdbapi4.c: In function ‘BiostrucAnnotSetToSeqAnnot’:
mmdbapi4.c:1828:54: warning: ‘, mapped to sequence alignment’ directive writing 30 bytes into a region of size between 21 and 70 [-Wformat-overflow=]
 1828 |       sprintf (buf, "VAST structural alignment for %s, mapped to sequence alignment", buf2);
      |                                                      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/mmdbapi1.h:232,
                 from ../include/mmdbapi.h:92,
                 from mmdbapi4.c:106:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 61 and 110 bytes into a destination of size 100
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mmdbapi4.c:1872:20: warning: ‘slavesip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1872 |     dsp->ids->next = slavesip;
      |     ~~~~~~~~~~~~~~~^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mmdbentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mmdbentr.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vastsubs.c
vastsubs.c: In function ‘LoadSubsetTable’:
vastsubs.c:212:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  212 |  fscanf(fd, "%d", &ndoms);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:239:2: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  239 |  fscanf(fd, "%d", &nsubs);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:258:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  258 |   fscanf(fd, "%d", &j);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:287:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  287 |   fscanf(fd, "%8c", domid);
      |   ^~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:296:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  296 |   fscanf(fd, "%d", &n);
      |   ^~~~~~~~~~~~~~~~~~~~
vastsubs.c:302:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  302 |    fscanf(fd, "%d %d %d", &subset[j], &grps[j], &ranks[j]);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
vastsubs.c:304:3: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  304 |   fscanf(fd, "\n");
      |   ^~~~~~~~~~~~~~~~
vastsubs.c:202:16: warning: ‘len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  202 |  Int4 i, j, n, len, strindex, ndoms, nsubs;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF prunebsc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
prunebsc.c: In function ‘PruneFeatureSet’:
prunebsc.c:220:22: warning: variable ‘bsfpDie’ set but not used [-Wunused-but-set-variable]
  220 |   BiostrucFeaturePtr bsfpDie, bsfp, bsfpnew = NULL;
      |                      ^~~~~~~
prunebsc.c: In function ‘PruneModel’:
prunebsc.c:272:30: warning: variable ‘mcsDie’ set but not used [-Wunused-but-set-variable]
  272 |   ModelCoordinateSetPtr mcs, mcsDie, mcsnew = NULL;
      |                              ^~~~~~
prunebsc.c: In function ‘PruneBiostruc’:
prunebsc.c:559:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  559 |     if (vnp = ValNodeFindNext(currentbp->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:574:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  574 |     if (vnp = ValNodeFindNext(het->descr, NULL, BiomolDescr_name))
      |         ^~~
prunebsc.c:663:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  663 |     if (vnp = ValNodeFindNext(bsfsp->descr, NULL, BiostrucFeatureSetDescr_name))
      |         ^~~
In file included from ../include/ncbi.h:62,
                 from ../include/prunebsc.h:10,
                 from prunebsc.c:34:
../include/ncbistr.h:339:20: warning: ‘feature_name’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  339 | #define StringICmp Nlm_StringICmp
      |                    ^~~~~~~~~~~~~~
prunebsc.c:522:25: note: ‘feature_name’ was declared here
  522 |   CharPtr chnid, hetid, feature_name;
      |                         ^~~~~~~~~~~~
prunebsc.c:649:23: warning: ‘pirbnew’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  649 |         pirbnew->next = pirb;
      |         ~~~~~~~~~~~~~~^~~~~~
prunebsc.c:695:18: warning: ‘mol_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  695 |       bsmpHead = PruneModel(bsmp, pvnIds, mol_id);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
prunebsc.c:591:26: warning: ‘currenthet’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |         currenthet->next = het;
      |         ~~~~~~~~~~~~~~~~~^~~~~
prunebsc.c:562:9: warning: ‘chnid’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |     if (*chnid == *chain)
      |         ^~~~~~
prunebsc.c:182:7: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  182 |       switch(mtype)
      |       ^~~~~~
prunebsc.c:173:8: note: ‘mtype’ was declared here
  173 |   Int4 mtype, molecule_id;
      |        ^~~~~
prunebsc.c:102:8: warning: ‘mtype’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  102 |   Int4 mtype;
      |        ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objcdd.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objcdd.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objcdd.c: In function ‘CddIdFree’:
objcdd.c:53:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   53 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:85:12: warning: unused variable ‘isError’ [-Wunused-variable]
   85 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddIdSetAsnRead’:
objcdd.c:248:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  248 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:245:12: warning: unused variable ‘av’ [-Wunused-variable]
  245 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddAsnRead’:
objcdd.c:402:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  402 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddSetAsnRead’:
objcdd.c:798:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  798 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:795:12: warning: unused variable ‘av’ [-Wunused-variable]
  795 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddTreeAsnRead’:
objcdd.c:935:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  935 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:934:12: warning: unused variable ‘isError’ [-Wunused-variable]
  934 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddTreeSetAsnRead’:
objcdd.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1144:12: warning: unused variable ‘av’ [-Wunused-variable]
 1144 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodesAsnRead’:
objcdd.c:1281:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1281 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1280:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1280 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddProjectAsnRead’:
objcdd.c:1478:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1478 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddOrgRefAsnRead’:
objcdd.c:1668:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1668 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1667:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1667 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddOrgRefSetAsnRead’:
objcdd.c:1838:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1838 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:1835:12: warning: unused variable ‘av’ [-Wunused-variable]
 1835 |    DataVal av;
      |            ^~
objcdd.c: In function ‘CddPrefNodeDescrFree’:
objcdd.c:1932:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1932 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:1967:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1967 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrSetAsnRead’:
objcdd.c:2130:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2130 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2127:12: warning: unused variable ‘av’ [-Wunused-variable]
 2127 |    DataVal av;
      |            ^~
objcdd.c: In function ‘GlobalIdAsnRead’:
objcdd.c:2263:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2263 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2262:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2262 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddRepeatAsnRead’:
objcdd.c:2450:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2450 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2449:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2449 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddBookRefAsnRead’:
objcdd.c:2627:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2627 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:2626:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2626 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddDescrSetAsnRead’:
objcdd.c:3183:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3183 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:3180:12: warning: unused variable ‘av’ [-Wunused-variable]
 3180 |    DataVal av;
      |            ^~
objcdd.c: In function ‘MatrixAsnRead’:
objcdd.c:3315:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3315 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘TriangleAsnRead’:
objcdd.c:3504:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3504 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘UpdateCommentFree’:
objcdd.c:3641:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 3641 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3685:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3685 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘UpdateAlignAsnRead’:
objcdd.c:3889:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3889 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘RejectIdAsnRead’:
objcdd.c:4064:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4064 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘FeatureEvidenceFree’:
objcdd.c:4188:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 4188 |    Pointer pnt;
      |            ^~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4232:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4232 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlignAnnotAsnRead’:
objcdd.c:4437:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4437 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘AlignAnnotSetAsnRead’:
objcdd.c:4606:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4606 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4603:12: warning: unused variable ‘av’ [-Wunused-variable]
 4603 |    DataVal av;
      |            ^~
objcdd.c: In function ‘DomainParentAsnRead’:
objcdd.c:4738:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4738 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4737:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4737 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SequenceTreeAsnRead’:
objcdd.c:4919:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4919 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:4918:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4918 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘AlgorithmTypeAsnRead’:
objcdd.c:5107:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5107 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5106:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5106 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5409 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘Children_footprintAsnRead’:
objcdd.c:5595:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5595 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5594:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5594 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘NodeAnnotationAsnRead’:
objcdd.c:5887:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5887 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:5886:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5886 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerRectAsnRead’:
objcdd.c:6053:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6053 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6052:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6052 |    Boolean isError = FALSE;
      |            ^~~~~~~
objcdd.c: In function ‘CddViewerAsnRead’:
objcdd.c:6235:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6235 |    AsnReadFunc func;
      |                ^~~~
objcdd.c: In function ‘CddScriptAsnRead’:
objcdd.c:6410:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 6410 |    AsnReadFunc func;
      |                ^~~~
objcdd.c:6409:12: warning: unused variable ‘isError’ [-Wunused-variable]
 6409 |    Boolean isError = FALSE;
      |            ^~~~~~~
In file included from objcdd.c:6:
objcdd.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:6:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from objcdd.c:7:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
objcdd.c: In function ‘CddIdAsnRead’:
objcdd.c:134:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  134 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddPrefNodeDescrAsnRead’:
objcdd.c:2016:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2016 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘CddDescrAsnRead’:
objcdd.c:3007:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3007 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘UpdateCommentAsnRead’:
objcdd.c:3746:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3746 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘FeatureEvidenceAsnRead’:
objcdd.c:4293:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4293 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c: In function ‘SeqTreeNodeAsnRead’:
objcdd.c:5561:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5561 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objcdd.c:5510:10: note: ‘choice’ was declared here
 5510 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddutil.c: In function ‘CddGetPmIds’:
cddutil.c:649:17: warning: unused variable ‘bRefOpen’ [-Wunused-variable]
  649 |   Boolean       bRefOpen = FALSE;
      |                 ^~~~~~~~
cddutil.c: In function ‘CddGetAnnotNames’:
cddutil.c:807:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  807 |   ValNodePtr      vnp, vnpHead = NULL;
      |                   ^~~
cddutil.c: In function ‘CddCheckForRepeats’:
cddutil.c:1034:7: warning: the address of ‘CddHasConsensus’ will always evaluate as ‘true’ [-Waddress]
 1034 |   if (!CddHasConsensus) return FALSE;
      |       ^
cddutil.c:1013:23: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1013 |   Int2                iStatus;
      |                       ^~~~~~~
cddutil.c: In function ‘CddMSLDenDiagToMSLDenSeg’:
cddutil.c:1663:30: warning: variable ‘lasts’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                              ^~~~~
cddutil.c:1663:23: warning: variable ‘lastm’ set but not used [-Wunused-but-set-variable]
 1663 |   Int4                lastm, lasts;
      |                       ^~~~~
cddutil.c: In function ‘SeqAlignInform’:
cddutil.c:1938:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 1938 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddAlignInform’:
cddutil.c:2125:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2125 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPssmInform’:
cddutil.c:2248:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2248 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddPosFreqInform’:
cddutil.c:2306:22: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2306 |   Int2               iStatus;
      |                      ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComputation’:
cddutil.c:2368:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2368 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2365:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2365 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddCposComputation’:
cddutil.c:2571:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 2571 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c:2568:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 2568 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddRetrieveBioseqById’:
cddutil.c:3379:15: warning: unused variable ‘retcode’ [-Wunused-variable]
 3379 |   Int2        retcode = 1;
      |               ^~~~~~~
cddutil.c:3377:15: warning: unused variable ‘uid’ [-Wunused-variable]
 3377 |   Int4        uid = 0;
      |               ^~~
cddutil.c: In function ‘CddCalculateTriangle’:
cddutil.c:3534:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3534:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3534 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddCalculateQuerySim’:
cddutil.c:3653:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |    ^~
cddutil.c:3653:31: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3653 |    if (sip1) SeqIdFree(sip1); if (bsp1) bsp1 = NULL;
      |                               ^~
cddutil.c: In function ‘CddConsensus’:
cddutil.c:3853:49: warning: variable ‘m_end’ set but not used [-Wunused-but-set-variable]
 3853 |   Int4                m_last, m_frst, s_insert, m_end;
      |                                                 ^~~~~
cddutil.c: In function ‘CddCposCompPart1’:
cddutil.c:4247:25: warning: variable ‘iStatus’ set but not used [-Wunused-but-set-variable]
 4247 |     Int2                iStatus;
      |                         ^~~~~~~
cddutil.c: In function ‘CddGetNewIndexForThreading’:
cddutil.c:4392:14: warning: unused variable ‘Index’ [-Wunused-variable]
 4392 |     Int4  i, Index=0;
      |              ^~~~~
cddutil.c: In function ‘CddCposComp’:
cddutil.c:4474:33: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4474 |     ValNodePtr          newRow, RowHead;
      |                                 ^~~~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4745:59: warning: variable ‘RowHead’ set but not used [-Wunused-but-set-variable]
 4745 |   ValNodePtr              ColumnHead, LetterHead, newRow, RowHead, newLetter;
      |                                                           ^~~~~~~
cddutil.c: In function ‘CddDumpTaxLinks’:
cddutil.c:5727:16: warning: unused variable ‘txid’ [-Wunused-variable]
 5727 |   Int4         txid = 0, gi = 0;
      |                ^~~~
cddutil.c: At top level:
cddutil.c:6267:1: warning: "/*" within comment [-Wcomment]
 6267 | /*---------------------------------------------------------------------------*/
      |  
In file included from ../include/cddutil.h:205,
                 from cddutil.c:353:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:353:
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
cddutil.c:4661:16: warning: ‘CddtakeMatrixCheckpoint’ defined but not used [-Wunused-function]
 4661 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
In file included from cddutil.c:349:
../include/cdd.h:343:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  343 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/cdd.h:342:19: warning: ‘at’ defined but not used [-Wunused-variable]
  342 | static AsnTypePtr at = atx;
      |                   ^~
../include/cdd.h:341:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  341 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/cdd.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "cdd.h24";
      |               ^~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from cddutil.c:336:
In function ‘strncpy’,
    inlined from ‘CddRegularizeFileName’ at cddutil.c:984:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound depends on the length of the source argument [-Wstringop-overflow=]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from cddutil.c:336:
cddutil.c: In function ‘CddRegularizeFileName’:
../include/ncbistr.h:279:20: note: length computed here
  279 | #define Nlm_StrLen strlen
cddutil.c:984:26: note: in expansion of macro ‘Nlm_StrLen’
  984 |     Nlm_StrNCpy(cAcc,cIn,Nlm_StrLen(cIn)-Nlm_StrLen(cEx));
      |                          ^~~~~~~~~~
cddutil.c: In function ‘CddCopyMSLDenDiag’:
cddutil.c:3015:25: warning: ‘ddpTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3015 |           ddpTail->next = ddpNew;
      |           ~~~~~~~~~~~~~~^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from cddutil.c:336:
cddutil.c: In function ‘CddCalculateTriangle’:
../include/ncbimem.h:232:23: warning: ‘buffer1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
cddutil.c:3415:19: note: ‘buffer1’ was declared here
 3415 |    Uint1Ptr       buffer1, buffer2, buffer3;
      |                   ^~~~~~~
cddutil.c:3524:22: warning: ‘pscTail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3524 |        pscTail->next = psc; pscTail = psc; psc = NULL;
      |        ~~~~~~~~~~~~~~^~~~~
cddutil.c: In function ‘CddDenDiagCposComp2KBP’:
cddutil.c:4974:11: warning: ‘pssm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4974 |     return(pssm);
      |           ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cddposutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cddposutil.c:119:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cddposutil.c: In function ‘CddfindThreshSequences’:
cddposutil.c:359:15: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  359 |   SeqIdPtr    thisId;         /* Ids of target sequences in current SeqAlign */
      |               ^~~~~~
cddposutil.c: In function ‘CddfindDenseDiagThreshSequences’:
cddposutil.c:386:16: warning: variable ‘thisId’ set but not used [-Wunused-but-set-variable]
  386 |   SeqIdPtr     thisId;        /* Ids of target sequences in current SeqAlign */
      |                ^~~~~~
cddposutil.c: In function ‘CddposFreqsToMatrix’:
cddposutil.c:1038:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((long unsigned int)length * 8)) + (sizetype)((long unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1038 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
cddposutil.c: In function ‘CddposDenseDiagDemographics’:
cddposutil.c:1094:17: warning: unused variable ‘is_new_id’ [-Wunused-variable]
 1094 |    Boolean      is_new_id = FALSE;
      |                 ^~~~~~~~~
cddposutil.c:1093:17: warning: unused variable ‘segIndex’ [-Wunused-variable]
 1093 |    Int4         segIndex;                   /*Index for which piece we are at*/
      |                 ^~~~~~~~
cddposutil.c:1092:25: warning: variable ‘startS’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                         ^~~~~~
cddposutil.c:1092:17: warning: variable ‘startQ’ set but not used [-Wunused-but-set-variable]
 1092 |    Int4         startQ, startS;    /*Indices into array of starting positions*/
      |                 ^~~~~~
cddposutil.c:1091:17: warning: unused variable ‘curId’ [-Wunused-variable]
 1091 |    SeqIdPtr     curId; /*Used to compare seq. coming from different SeqAligns*/
      |                 ^~~~~
cddposutil.c: In function ‘CddSetUpSearchInternalByLoc’:
cddposutil.c:1246:39: warning: unused variable ‘last_length_adjustment’ [-Wunused-variable]
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                       ^~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:2040:43: warning: variable ‘final_db_seq’ set but not used [-Wunused-but-set-variable]
 2040 |       Int4        final_virtual_db_seq=0, final_db_seq=0;
      |                                           ^~~~~~~~~~~~
cddposutil.c:2006:28: warning: unused variable ‘virtual_oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                            ^~~~~~~~~~~~~~~
cddposutil.c:2006:19: warning: unused variable ‘oid_bit’ [-Wunused-variable]
 2006 |  Uint4            oid_bit, virtual_oid_bit;
      |                   ^~~~~~~
cddposutil.c:2005:30: warning: unused variable ‘virtual_mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                              ^~~~~~~~~~~~~~~~~~
cddposutil.c:2005:18: warning: unused variable ‘mask_index’ [-Wunused-variable]
 2005 |  Int4            mask_index, virtual_mask_index;
      |                  ^~~~~~~~~~
cddposutil.c:2004:19: warning: unused variable ‘alias_oidlist’ [-Wunused-variable]
 2004 |  OIDListPtr       alias_oidlist;
      |                   ^~~~~~~~~~~~~
cddposutil.c:2003:19: warning: unused variable ‘use_private_gilist’ [-Wunused-variable]
 2003 |  Boolean          use_private_gilist = FALSE;
      |                   ^~~~~~~~~~~~~~~~~~
cddposutil.c:2000:20: warning: unused variable ‘vnp’ [-Wunused-variable]
 2000 |   ValNodePtr       vnp;
      |                    ^~~
cddposutil.c: In function ‘CddposReadAlignment’:
cddposutil.c:2226:16: warning: variable ‘alignPos’ set but not used [-Wunused-but-set-variable]
 2226 |   Int4         alignPos, queryOffset, subjectOffset, matchLength;
      |                ^~~~~~~~
In file included from ../include/cddutil.h:205,
                 from cddposutil.c:131:
cddposutil.c: At top level:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from cddposutil.c:131:
../include/cddutil.h:507:27: warning: ‘CddReadBlastOptions’ declared ‘static’ but never defined [-Wunused-function]
  507 | static PGPBlastOptionsPtr CddReadBlastOptions(BioseqPtr bsp, Int4 iPseudo, CharPtr matrix_name);
      |                           ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:512:13: warning: ‘BlastKarlinBlkCopy’ declared ‘static’ but never defined [-Wunused-function]
  512 | static void BlastKarlinBlkCopy(BLAST_KarlinBlkPtr kbp_in,BLAST_KarlinBlkPtr kbp_out);
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:516:13: warning: ‘CddputMatrixKbp’ declared ‘static’ but never defined [-Wunused-function]
  516 | static void CddputMatrixKbp(FILE *checkFile, BLAST_KarlinBlkPtr kbp,
      |             ^~~~~~~~~~~~~~~
../include/cddutil.h:518:13: warning: ‘CddputMatrixMatrix’ declared ‘static’ but never defined [-Wunused-function]
  518 | static void CddputMatrixMatrix(FILE *checkFile,
      |             ^~~~~~~~~~~~~~~~~~
../include/cddutil.h:522:16: warning: ‘CddtakeMatrixCheckpoint’ declared ‘static’ but never defined [-Wunused-function]
  522 | static Boolean CddtakeMatrixCheckpoint(compactSearchItems *compactSearch,
      |                ^~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:589:25: warning: ‘CddFindSeqIdInSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  589 | static  SeqIdPtr        CddFindSeqIdInSeqLoc(SeqLocPtr location);
      |                         ^~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:591:25: warning: ‘CddRelocateSeqLoc’ declared ‘static’ but never defined [-Wunused-function]
  591 | static  void            CddRelocateSeqLoc(SeqLocPtr location, SeqIdPtr sip, Int4 *ali);
      |                         ^~~~~~~~~~~~~~~~~
../include/cddutil.h:592:25: warning: ‘CddSeqLocInExpAlign’ declared ‘static’ but never defined [-Wunused-function]
  592 | static  Int4            CddSeqLocInExpAlign(SeqLocPtr location, CddExpAlignPtr eap);
      |                         ^~~~~~~~~~~~~~~~~~~
../include/cddutil.h:593:25: warning: ‘CddFindSeqIdInAlignAnnot’ declared ‘static’ but never defined [-Wunused-function]
  593 | static  SeqIdPtr        CddFindSeqIdInAlignAnnot(AlignAnnotPtr oldannot);
      |                         ^~~~~~~~~~~~~~~~~~~~~~~~
../include/cddutil.h:623:24: warning: ‘HitYet’ declared ‘static’ but never defined [-Wunused-function]
  623 | static Boolean         HitYet(Int4Ptr retlist, Int4 index, Int4 i);
      |                        ^~~~~~
../include/cddutil.h:649:16: warning: ‘CddFixForXML’ declared ‘static’ but never defined [-Wunused-function]
  649 | static CharPtr CddFixForXML(CharPtr pc);
      |                ^~~~~~~~~~~~
cddposutil.c:971:13: warning: ‘CddfreePosFreqs’ defined but not used [-Wunused-function]
  971 | static void CddfreePosFreqs(Nlm_FloatHi ** posFreqs, Int4 length)
      |             ^~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddposComputeSequenceWeights’:
cddposutil.c:840:35: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  840 |       posSearch->posSigma[qplace] = intervalSigma;
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
cddposutil.c:829:10: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  829 |       if (Sigma > 0) {
      |          ^
cddposutil.c: In function ‘CddposDemographics’:
cddposutil.c:1199:24: warning: ‘retrievalOffset’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1199 |          subjectOffset = curSegs->starts[startS] - retrievalOffset;
      |          ~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cddposutil.c: In function ‘CddSetUpSearchWithReadDb’:
cddposutil.c:1740:48: warning: ‘min_query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1740 |         if( 0 != BlastComputeLengthAdjustment(1/min_query_length,
      |                                               ~^~~~~~~~~~~~~~~~~
cddposutil.c:1246:63: note: ‘min_query_length’ was declared here
 1246 |   index, length, length_adjustment=0, last_length_adjustment, min_query_length;
      |                                                               ^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF objmime.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmime.c:76:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmime.c: In function ‘NcbiMimeAsn1Free’:
objmime.c:126:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  126 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:173:12: warning: unused variable ‘isError’ [-Wunused-variable]
  173 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataFree’:
objmime.c:382:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  382 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:428:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  428 |    AsnReadFunc func;
      |                ^~~~
objmime.c:427:12: warning: unused variable ‘isError’ [-Wunused-variable]
  427 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘Data_dataAsnRead’:
objmime.c:522:12: warning: unused variable ‘isError’ [-Wunused-variable]
  522 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BiostrucAlignAsnRead’:
objmime.c:801:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  801 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucAlignSeqAsnRead’:
objmime.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqAsnRead’:
objmime.c:1220:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1220 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘BiostrucSeqsAsnRead’:
objmime.c:1415:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1415 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataFree’:
objmime.c:1613:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1613 |    Pointer pnt;
      |            ^~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1647:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1647 |    AsnReadFunc func;
      |                ^~~~
objmime.c: In function ‘SeqAlignData_seq_align_dataAsnRead’:
objmime.c:1734:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1734 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmime.c: In function ‘BundleSeqsAlignsAsnRead’:
objmime.c:1973:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1973 |    AsnReadFunc func;
      |                ^~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
objmime.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:4,
                 from objmime.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/mapmime.h:6,
                 from objmime.c:81:
../include/objcdd.h:642:37: warning: ‘Children_childrenFree’ declared ‘static’ but never defined [-Wunused-function]
  642 | static Children_childrenPtr LIBCALL Children_childrenFree PROTO ((Children_childrenPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:643:37: warning: ‘Children_childrenAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  643 | static Children_childrenPtr LIBCALL Children_childrenAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:644:24: warning: ‘Children_childrenAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  644 | static Boolean LIBCALL Children_childrenAsnWrite PROTO (( Children_childrenPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:666:38: warning: ‘Children_footprintFree’ declared ‘static’ but never defined [-Wunused-function]
  666 | static Children_footprintPtr LIBCALL Children_footprintFree PROTO ((Children_footprintPtr ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:667:38: warning: ‘Children_footprintNew’ declared ‘static’ but never defined [-Wunused-function]
  667 | static Children_footprintPtr LIBCALL Children_footprintNew PROTO (( void ));
      |                                      ^~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:668:38: warning: ‘Children_footprintAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  668 | static Children_footprintPtr LIBCALL Children_footprintAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                      ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objcdd.h:669:24: warning: ‘Children_footprintAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  669 | static Boolean LIBCALL Children_footprintAsnWrite PROTO (( Children_footprintPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~
objmime.c: In function ‘NcbiMimeAsn1AsnRead’:
objmime.c:235:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c: In function ‘EntrezGeneralAsnRead’:
objmime.c:584:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  584 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:521:10: note: ‘choice’ was declared here
  521 |    Uint1 choice;
      |          ^~~~~~
objmime.c: In function ‘BiostrucSeqsAlignsCddAsnRead’:
objmime.c:1780:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1780 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmime.c:1733:10: note: ‘choice’ was declared here
 1733 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF strucapi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from strucapi.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdalgs.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdatd.c
thrdatd.c: In function ‘atd’:
thrdatd.c:859:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      | ^~~
thrdatd.c:859:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  859 | for(i=0;i<nsc;i++) printf("%d ",sai->al[i]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:860:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      | ^~~
thrdatd.c:860:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  860 | for(i=0;i<sai->nmt;i++) printf("%d ",sai->sq[i]); printf("sai->sq\n");
      |                                                   ^~~~~~
thrdatd.c:862:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:862:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  862 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:863:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:863:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  863 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:864:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:864:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  864 | for(i=0;i<sli->nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                                   ^~~~~~
thrdatd.c:865:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:865:51: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  865 | for(i=0;i<sli->nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                                   ^~~~~~
thrdatd.c:1014:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      | ^~~
thrdatd.c:1014:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1014 | for(k=0;k<nsc;k++) printf("%d ",sai->al[k]); printf("sai->al\n");
      |                                              ^~~~~~
thrdatd.c:1015:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      | ^~~
thrdatd.c:1015:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1015 | for(k=0;k<nmt;k++) printf("%d ",sai->sq[k]); printf("sai->sq\n");
      |                                              ^~~~~~
thrdatd.c:1017:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      | ^~~
thrdatd.c:1017:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1017 | for(i=0;i<nsc;i++) printf("%d ",sli->no[i]); printf("sli->no\n");
      |                                              ^~~~~~
thrdatd.c:1018:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      | ^~~
thrdatd.c:1018:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1018 | for(i=0;i<nsc;i++) printf("%d ",sli->co[i]); printf("sli->co\n");
      |                                              ^~~~~~
thrdatd.c:1019:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      | ^~~
thrdatd.c:1019:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1019 | for(i=0;i<nlp;i++) printf("%d ",sli->lp[i]); printf("sli->lp\n");
      |                                              ^~~~~~
thrdatd.c:1020:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      | ^~~
thrdatd.c:1020:46: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1020 | for(i=0;i<nmt;i++) printf("%d ",sli->cr[i]); printf("sli->cr\n");
      |                                              ^~~~~~
thrdatd.c:1244:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      | ^~~
thrdatd.c:1244:39: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1244 | for(i=0;i<nsc;i++) free(spe->gss[i]); free(spe->gss);
      |                                       ^~~~
thrdatd.c:1251:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      | ^~~
thrdatd.c:1251:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1251 | for(i=0; i<ndi; i++) free(spn->nrr[i]); free(spn->nrr);
      |                                         ^~~~
thrdatd.c:1255:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      | ^~~
thrdatd.c:1255:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1255 | for(i=0; i<ndi; i++) free(spn->nrp[i]); free(spn->nrp);
      |                                         ^~~~
thrdatd.c:1259:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      | ^~~
thrdatd.c:1259:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1259 | for(i=0; i<ndi; i++) free(spn->nrf[i]); free(spn->nrf);
      |                                         ^~~~
thrdatd.c:1260:1: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      | ^~~
thrdatd.c:1260:41: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1260 | for(i=0; i<ndi; i++) free(spn->frf[i]); free(spn->frf);
      |                                         ^~~~
thrdatd.c:201:8: warning: variable ‘hh’ set but not used [-Wunused-but-set-variable]
  201 |  float hh;
      |        ^~
thrdatd.c:198:6: warning: variable ‘rf’ set but not used [-Wunused-but-set-variable]
  198 |  int rf;  /* Reference position for a core element              */
      |      ^~
thrdatd.c:188:14: warning: unused variable ‘m’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |              ^
thrdatd.c:188:12: warning: unused variable ‘l’ [-Wunused-variable]
  188 |  int i,j,k,l,m,n; /* Counters                                           */
      |            ^
thrdatd.c:171:6: warning: variable ‘nrp’ set but not used [-Wunused-but-set-variable]
  171 |  int nrp;  /* Number of residue-peptide contacts in motif        */
      |      ^~~
thrdatd.c:170:6: warning: variable ‘nrr’ set but not used [-Wunused-but-set-variable]
  170 |  int nrr;  /* Number of residue-residue contacts in motif        */
      |      ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdbwfi.c
thrdbwfi.c: In function ‘bwfi’:
thrdbwfi.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
thrdbwfi.c:64:5: warning: ‘nt’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   64 | int nt;  /* Number of threads within specified ensemble cutoff */
      |     ^~
thrdbwfi.c:89:20: warning: ‘nz’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   89 | cw=0.; ct=ttb->mx; for(i=0; i<=nz; i++) {
      |                    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpal.c
thrdcpal.c: In function ‘cpal’:
thrdcpal.c:210:1: warning: control reaches end of non-void function [-Wreturn-type]
  210 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcpll.c
thrdcpll.c: In function ‘cpll’:
thrdcpll.c:74:5: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   74 | int nrt;  /* Number of residue types */
      |     ^~~
thrdcpll.c:229:1: warning: control reaches end of non-void function [-Wreturn-type]
  229 | }
      | ^
thrdcpll.c:220:15: warning: ‘r2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  220 |   cl->rf.t2[k]=r2;
      |   ~~~~~~~~~~~~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcprl.c
thrdcprl.c: In function ‘cprl’:
thrdcprl.c:261:1: warning: control reaches end of non-void function [-Wreturn-type]
  261 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdcxei.c
thrdcxei.c: In function ‘cxei’:
thrdcxei.c:94:15: warning: variable ‘ms’ set but not used [-Wunused-but-set-variable]
   94 | int     ntot, ms;
      |               ^~
thrdcxei.c:205:1: warning: control reaches end of non-void function [-Wreturn-type]
  205 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrddgri.c
thrddgri.c: In function ‘g’:
thrddgri.c:72:5: warning: variable ‘s0’ set but not used [-Wunused-but-set-variable]
   72 | int s0;
      |     ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdrsmp.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsal0.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsalu.c
thrdsalu.c: In function ‘salu’:
thrdsalu.c:83:1: warning: control reaches end of non-void function [-Wreturn-type]
   83 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdsgoi.c
thrdsgoi.c: In function ‘sgoi’:
thrdsgoi.c:98:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |   ^~~
thrdsgoi.c:98:35: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
   98 |   for(i=0; i<nsc; i++)  si[i]=i;  break; }
      |                                   ^~~~~
thrdsgoi.c:115:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |   ^~~
thrdsgoi.c:115:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  115 |   for(i=0; i<nsc; i++) to[i]=0; break; }
      |                                 ^~~~~
thrdsgoi.c:119:3: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |   ^~~
thrdsgoi.c:119:33: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
  119 |   for(i=0; i<nsc; i++) to[i]=1; break; }
      |                                 ^~~~~
thrdsgoi.c:123:1: warning: control reaches end of non-void function [-Wreturn-type]
  123 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslo0.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslor.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdslou.c
thrdslou.c: In function ‘slou’:
thrdslou.c:114:1: warning: control reaches end of non-void function [-Wreturn-type]
  114 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspci.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspea.c
thrdspea.c: In function ‘spea’:
thrdspea.c:91:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   91 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspea.c:189:1: warning: control reaches end of non-void function [-Wreturn-type]
  189 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspel.c
thrdspel.c: In function ‘spel’:
thrdspel.c:88:9: warning: variable ‘nrt’ set but not used [-Wunused-but-set-variable]
   88 | int     nrt;            /* Number of residue types in potential */
      |         ^~~
thrdspel.c:188:1: warning: control reaches end of non-void function [-Wreturn-type]
  188 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdspni.c
thrdspni.c: In function ‘spni’:
thrdspni.c:238:1: warning: control reaches end of non-void function [-Wreturn-type]
  238 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttb0.c
thrdttb0.c: In function ‘ttb0’:
thrdttb0.c:75:1: warning: control reaches end of non-void function [-Wreturn-type]
   75 | }
      | ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdttbi.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF thrdzsc.c
thrdzsc.c: In function ‘zsc’:
thrdzsc.c:107:7: warning: unused variable ‘gs’ [-Wunused-variable]
  107 | int g,gs;
      |       ^~
thrdzsc.c:102:18: warning: unused variable ‘zsc’ [-Wunused-variable]
  102 | float tg,tgp,tgm,zsc;         /* Energy of shuffled sequence */
      |                  ^~~
thrdzsc.c:95:5: warning: unused variable ‘ps’ [-Wunused-variable]
   95 | int ps,ms,cs,
      |     ^~
thrdzsc.c:80:5: warning: unused variable ‘temp’ [-Wunused-variable]
   80 | int temp;         /* Random index of the query sequence */
      |     ^~~~
thrdzsc.c:79:2: warning: unused variable ‘kk’ [-Wunused-variable]
   79 |  kk,itr,ii,jj; /* Counters */
      |  ^~
thrdzsc.c:369:1: warning: control reaches end of non-void function [-Wreturn-type]
  369 | }
      | ^
thrdzsc.c:357:39: warning: ‘tg_max’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  357 |  ttb->zsc[i_max]=ScalingFactor*(tg_max-avg)/disp;
      |                                ~~~~~~~^~~~~
rm -f libncbimmdb.a
ar cru libncbimmdb.a corematx.o dvncode.o objmmdb1.o objmmdb2.o objmmdb3.o objcn3d.o mmdbapi.o mmdbapi1.o mmdbapi2.o mmdbapi3.o mmdbapi4.o mmdbentr.o vastsubs.o prunebsc.o objcdd.o cddutil.o cddposutil.o objmime.o strucapi.o thrdalgs.o thrdatd.o  thrdbwfi.o thrdcpal.o thrdcpll.o thrdcprl.o thrdcxei.o thrddgri.o thrdrsmp.o thrdsal0.o thrdsalr.o thrdsalu.o thrdsgoi.o thrdslo0.o thrdslor.o thrdslou.o thrdspci.o thrdspea.o thrdspel.o thrdspni.o thrdttb0.o thrdttbi.o thrdzsc.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimmdb.a ../lib
ranlib ../lib/libncbimmdb.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF csim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from csim.c:74:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
csim.c: In function ‘set_pam_200’:
csim.c:163:29: warning: missing braces around initializer [-Wmissing-braces]
  163 |  static Int2 wgts[23][23] = { /* the PAM200 matrix */
      |                             ^
  164 | 
  165 |  2,-2, 0, 0,-2,-1, 0, 1,-1,-1,-2,-1,-1,-3, 1, 1, 1,-5,-3, 0, 1, 1, 0,
      |  {                                                                  }
  166 |  -2, 5, 0,-1,-3, 1,-1,-3, 1,-2,-2, 2, 0,-3, 0, 0,-1, 1,-4,-2, 0, 1, 0,
      |  {                                                                   }
  167 |   0, 0, 2, 2,-3, 0, 1, 0, 1,-1,-2, 1,-2,-2, 0, 1, 0,-4,-1,-2, 3, 2, 0,
      |   {                                                                  }
  168 |   0,-1, 2, 3,-4, 1, 3, 0, 0,-2,-3, 0,-2,-4,-1, 0, 0,-6,-3,-2, 4, 3, 0,
      |   {                                                                  }
  169 |  -2,-3,-3,-4, 8,-4,-4,-3,-3,-2,-5,-4,-4,-4,-2, 0,-2,-6, 0,-2,-3,-3, 0,
      |  {                                                                   }
  170 |  -1, 1, 0, 1,-4, 4, 2,-1, 2,-2,-1, 0,-1,-4, 0,-1,-1,-4,-3,-2, 2, 4, 0,
      |  {                                                                   }
  171 |   0,-1, 1, 3,-4, 2, 3, 0, 0,-2,-3, 0,-2,-4, 0, 0, 0,-6,-3,-2, 3, 4, 0,
      |   {                                                                  }
  172 |   1,-3, 0, 0,-3,-1, 0, 4,-2,-2,-3,-2,-3,-3,-1, 1, 0,-5,-4,-1, 1, 0, 0,
      |   {                                                                  }
  173 |  -1, 1, 1, 0,-3, 2, 0,-2, 5,-2,-2, 0,-2,-1, 0,-1,-1,-3, 0,-2, 2, 2, 0,
      |  {                                                                   }
  174 |  -1,-2,-1,-2,-2,-2,-2,-2,-2, 4, 2,-1, 2, 1,-2,-1, 0,-5,-1, 3,-1,-1, 0,
      |  {                                                                   }
  175 |  -2,-2,-2,-3,-5,-1,-3,-3,-2, 2, 4,-2, 3, 1,-2,-2,-1,-4,-1, 1,-2,-1, 0,
      |  {                                                                   }
  176 |  -1, 2, 1, 0,-4, 0, 0,-2, 0,-1,-2, 4, 1,-4,-1, 0, 0,-3,-4,-2, 1, 1, 0,
      |  {                                                                   }
  177 |  -1, 0,-2,-2,-4,-1,-2,-3,-2, 2, 3, 1, 5, 0,-2,-1, 0,-4,-2, 1,-1, 0, 0,
      |  {                                                                   }
  178 |  -3,-3,-2,-4,-4,-4,-4,-3,-1, 1, 1,-4, 0, 7,-4,-2,-2, 0, 5,-1,-2,-3, 0,
      |  {                                                                   }
  179 |   1, 0, 0,-1,-2, 0, 0,-1, 0,-2,-2,-1,-2,-4, 5, 1, 0,-5,-4,-1, 0, 1, 0,
      |   {                                                                  }
  180 |   1, 0, 1, 0, 0,-1, 0, 1,-1,-1,-2, 0,-1,-2, 1, 2, 1,-2,-2,-1, 1, 1, 0,
      |   {                                                                  }
  181 |   1,-1, 0, 0,-2,-1, 0, 0,-1, 0,-1, 0, 0,-2, 0, 1, 3,-4,-2, 0, 1, 0, 0,
      |   {                                                                  }
  182 |  -5, 1,-4,-6,-6,-4,-6,-5,-3,-5,-4,-3,-4, 0,-5,-2,-4,12, 0,-6,-3,-4, 0,
      |  {                                                                   }
  183 |  -3,-4,-1,-3, 0,-3,-3,-4, 0,-1,-1,-4,-2, 5,-4,-2,-2, 0, 7,-2,-1,-2, 0,
      |  {                                                                   }
  184 |   0,-2,-2,-2,-2,-2,-2,-1,-2, 3, 1,-2, 1,-1,-1,-1, 0,-6,-2, 4,-1,-1, 0,
      |   {                                                                  }
  185 |   1, 0, 3, 4,-3, 2, 3, 1, 2,-1,-2, 1,-1,-2, 0, 1, 1,-3,-1,-1, 4, 4, 0,
      |   {                                                                  }
  186 |   1, 1, 2, 3,-3, 4, 4, 0, 2,-1,-1, 1, 0,-3, 1, 1, 0,-4,-2,-1, 4, 5, 0,
      |   {                                                                  }
  187 |   0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0,
      |   {
  188 | };
      | }
csim.c:196:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |          ~~~~~~^~~
csim.c:196:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  196 |        V[achars[i]][achars[j]]=10*(wgts[i][j]);
      |                     ~~~~~~^~~
csim.c: In function ‘set_pam_file’:
csim.c:228:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |              ~~~~^~~
csim.c:228:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  228 |            V[alph[i]][alph[j]]=(Int2)(10*weight);
      |                       ~~~~^~~
csim.c: In function ‘big_pass’:
csim.c:668:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  668 |       va = v[A[i]];
      |              ~^~~
csim.c:692:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  692 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘diff1’:
csim.c:799:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  799 |       va = v[A[1]];
      |              ~^~~
csim.c:805:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  805 |             { c = va[B[j]] - ( GAP(j-1) + GAP(N-j) );
      |                      ~^~~
csim.c:849:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  849 |       va = v[A[i]];
      |              ~^~~
csim.c:853:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                            ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:853:51: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  853 |    DIAG(i+(s_ptr->I), (s_ptr->J)+j, c, s+v[A[i]][B[j]])
      |                                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:874:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 |       va = v[A[i+1]];
      |              ~^~~~~
csim.c:878:45: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                            ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:878:53: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 |    DIAG(i+1+s_ptr->I, j+1+s_ptr->J, c, s+v[A[i+1]][B[j+1]])
      |                                                    ~^~~~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:893:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  893 |       if (c > midc || CC[j] != DD[j] && RR[j] == SS[j])
      |                       ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~
csim.c: In function ‘locate’:
csim.c:974:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  974 |       va = v[A[i]];
      |              ~^~~
csim.c:991:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  991 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1030:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1030 |        va = v[A[(plist->m1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1043:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1043 |     DIAG((plist->m1), j, c, p+va[B[j]])  /* diagonal */
      |                                  ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1061:31: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1061 |     if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                       ~~~~~~~~^~~~~~~~~~
csim.c:1062:44: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1062 |                                 || fi > rl && fj > cl ) )
      |                                    ~~~~~~~~^~~~~~~~~~
csim.c:1071:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1072:20: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1072 |         || fi > rl && fj > cl ) )
      |            ~~~~~~~~^~~~~~~~~~
csim.c:1084:16: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1084 |        va = v[B[(plist->n1)]];
      |               ~^~~~~~~~~~~~~
csim.c:1110:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1110 |            DIAG(i, (plist->n1), c, p+va[A[i]])
      |                                         ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c:1128:38: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1128 |            if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                              ~~~~~~~~^~~~~~~~~~
csim.c:1129:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1129 |                  || fi > rl && fj > cl ) )
      |                     ~~~~~~~~^~~~~~~~~~
csim.c:1138:34: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1138 |        if ( ! rflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~^~~~~~~~~~
csim.c:1139:47: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1139 |                                    || fi > rl && fj > cl ) )
      |                                       ~~~~~~~~^~~~~~~~~~
csim.c:1144:29: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 1144 |       if ( (plist->m1) == 1 && (plist->n1) == 1 || no_cross(flag, plist, &rl, &cl) )
      |            ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
csim.c: In function ‘small_pass’:
csim.c:1186:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1186 |       va = v[A[i]];
      |              ~^~~
csim.c:1212:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1212 |     DIAG(i, j, c, p+va[B[j]])  /* diagonal */
      |                        ~^~~
csim.c:440:11: note: in definition of macro ‘DIAG’
  440 |     x = ( pvalue );     \
      |           ^~~~~~
csim.c: In function ‘display’:
csim.c:1360:5: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1360 |  if (i < M || j < N)
      |     ^
csim.c: In function ‘set_pam_file’:
csim.c:227:12: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  227 |            fscanf(fp, "%f", &weight);      /**get the matrix**/
      |            ^~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
csim.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: csim.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
csim.c: In function ‘SIM’:
csim.c:1071:56: warning: ‘dj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                                                ~~~~~~~~^~~~~~~~~~
csim.c:928:23: note: ‘dj’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                       ^~
csim.c:1071:45: warning: ‘di’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1071 |        if ( ! cflag && ( ci > rl && cj > cl || di > rl && dj > cl
      |                          ~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
csim.c:928:19: note: ‘di’ was declared here
  928 |   register  Int4  di, dj;  /* end-point associated with d */
      |                   ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF db_slist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from db_slist.c:97:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
db_slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: db_slist.c,v 6.2 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from dust.c:102:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dust.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_dust.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_dust.c:39:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   39 | static char const rcsid[] =
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF falign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from falign.c:92:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
falign.c: In function ‘fbld_table’:
falign.c:490:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  490 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:494:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  494 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bbld_table’:
falign.c:517:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  517 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:521:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  521 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rcbld_table’:
falign.c:544:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  544 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:548:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  548 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘ex_table’:
falign.c:567:43: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  567 |  ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                           ^~
falign.c: In function ‘free_all’:
falign.c:668:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  668 |   if (df = cdiag_prev[l]) {
      |       ^~
falign.c: In function ‘scan’:
falign.c:688:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  688 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:694:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  694 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:710:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  710 |   if (df = diag_prev[len1+len2-1-pos]) {
      |       ^~
falign.c:719:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  719 |   if (df=diag_prev[l]) {
      |       ^~
falign.c: In function ‘fscan’:
falign.c:763:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  763 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:769:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  769 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘bscan’:
falign.c:794:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  794 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:800:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  800 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rfscan’:
falign.c:870:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  870 |   ecode = (ecode << 2) + encoding[*++q];
      |                                   ^~~~
falign.c:876:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  876 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c:881:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  881 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c:889:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  889 |   if (df = diag_prev[len1+se2-pos]) {
      |       ^~
falign.c: In function ‘trcscan’:
falign.c:1476:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1476 |   ecode = (ecode << 2) + encoding[*--q];
      |                                   ^~~~
falign.c:1482:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1482 |   ecode = ((ecode & mask) << 2) + encoding[*q];
      |                                            ^~
falign.c: In function ‘rclocal’:
falign.c:1547:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1547 |  if (pf = diag_prev[ocur_diag]) {
      |      ^~
falign.c: In function ‘enterS’:
falign.c:1897:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1897 |  if (s = findS(f->bgf)) {
      |      ^
falign.c: In function ‘local’:
falign.c:1958:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1958 |  if (pf = diag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘align’:
falign.c:1999:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 1999 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘calign’:
falign.c:2054:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2054 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
falign.c: In function ‘malign’:
falign.c:2109:6: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 2109 |  if (pf = cdiag_prev[cur_diag]) {
      |      ^~
At top level:
falign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: falign.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF g_any.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from g_any.c:89:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
g_any.c: In function ‘k_align’:
g_any.c:212:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  212 |   va = vv[A[i+1]];
      |           ~^~~~~
g_any.c:229:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  229 |    if (j < J2) c = s + va[B[j+1]];
      |                           ~^~~~~
g_any.c:319:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  319 |   b2 = PP[t1][b1];
      |          ^
g_any.c:322:10: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  322 |   t2 = PT[t1][b1];
      |          ^
g_any.c: In function ‘z_ALIGN’:
g_any.c:367:7: warning: variable ‘check_score’ set but not used [-Wunused-but-set-variable]
  367 |  Int4 check_score;
      |       ^~~~~~~~~~~
g_any.c: In function ‘CHECK_SCORE’:
g_any.c:492:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |              ~^~~~~
g_any.c:492:23: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  492 |   score = vv[A[++i]][B[++j]] + score;
      |                      ~^~~~~
At top level:
g_any.c:428:35: warning: ‘CLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                                   ^~~~~
g_any.c:428:24: warning: ‘BLINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |                        ^~~~~
g_any.c:428:13: warning: ‘ALINE’ defined but not used [-Wunused-variable]
  428 | static Char ALINE[51], BLINE[51], CLINE[51];
      |             ^~~~~
g_any.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: g_any.c,v 6.5 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim2.c
sim2.c: In function ‘SIM2’:
sim2.c:19:16: warning: unused variable ‘compB’ [-Wunused-variable]
   19 |  CharPtr A, B, compB = NULL;
      |                ^~~~~
sim2.c:17:26: warning: unused variable ‘sapC’ [-Wunused-variable]
   17 |  SeqAlignPtr sap = NULL, sapC=NULL, out_sap, out_sapC;
      |                          ^~~~
At top level:
sim2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim2.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sim3.c:28:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim3.c: In function ‘locate’:
sim3.c:103:35: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  103 |   ecode = (ecode << 2) + encoding[*p++];
      |                                   ^~~~
sim3.c:105:44: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  105 |   ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                            ^~~~
sim3.c:113:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  113 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:115:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  115 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:129:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  129 |                 ecode = (ecode << 2) + encoding[*p++];
      |                                                 ^~~~
sim3.c:133:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  133 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
sim3.c:152:46: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  152 |   ecode1 = ((ecode1 & mask) << 2) + encoding[*q++];
      |                                              ^~~~
sim3.c:155:58: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  155 |                 ecode = ((ecode & mask) << 2) + encoding[*p++];
      |                                                          ^~~~
At top level:
sim3.c:1067:16: warning: ‘is_end_seg’ defined but not used [-Wunused-function]
 1067 | static Boolean is_end_seg(EditScriptPtr curr, EditScriptPtr head)
      |                ^~~~~~~~~~
sim3.c:1056:13: warning: ‘get_current_pos’ defined but not used [-Wunused-function]
 1056 | static Int4 get_current_pos(Int4Ptr pos, Int4 length)
      |             ^~~~~~~~~~~~~~~
sim3.c:1048:13: warning: ‘get_start_pos’ defined but not used [-Wunused-function]
 1048 | static Int4 get_start_pos(SeqLocPtr slp)
      |             ^~~~~~~~~~~~~
sim3.c:806:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
  806 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, CharPtr A, CharPtr B)
      |             ^~~~~~~~~~~~
sim3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim3.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim3.c: In function ‘locate’:
sim3.c:230:17: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  230 |  *j2 = paired_bj+1;
      |        ~~~~~~~~~^~
sim3.c:229:6: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  229 |  *j1 = paired_fj;
      |  ~~~~^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sim4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sim4.c:18:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:630:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  630 |   while(i1 = sgp->Blist[i].next) {
      |         ^~
sim4.c: In function ‘greedy’:
sim4.c:1770:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1770 |              if (row == 0 && col == 0)
      |                 ^
sim4.c:1794:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1794 |              if (row == 0)
      |                 ^
sim4.c:1838:17: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1838 |              if (col == 0)
      |                 ^
sim4.c:1962:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1962 |                if (row == m && col == n)
      |                   ^
sim4.c:1991:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1991 |                if (row == m)
      |                   ^
sim4.c:2037:19: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2037 |                if (col == n)
      |                   ^
sim4.c: In function ‘DISPLAY’:
sim4.c:2625:35: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 2625 |       if (a >= ALINE+50 || i >= M && j >= N)
      |                            ~~~~~~~^~~~~~~~~
At top level:
sim4.c:2592:13: warning: ‘DISPLAY’ defined but not used [-Wunused-function]
 2592 | static void DISPLAY(Int1 A[], Int1 B[], Int4 M, Int4 N, Int4 S[], Int4 AP, Int4 BP)
      |             ^~~~~~~
sim4.c:2563:13: warning: ‘S2A’ defined but not used [-Wunused-function]
 2563 | static void S2A(EditScriptPtr head, Int4Ptr S)
      |             ^~~
sim4.c:2499:13: warning: ‘Print_Script’ defined but not used [-Wunused-function]
 2499 | static void Print_Script(EditScriptPtr head, Int4 M, Int4 N, data_t *data)
      |             ^~~~~~~~~~~~
sim4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sim4.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sim4.c: In function ‘locate’:
sim4.c:2919:19: warning: ‘paired_bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2919 |   *j2 = paired_bj + 1;
      |         ~~~~~~~~~~^~~
sim4.c:2918:7: warning: ‘paired_fj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2918 |   *j1 = paired_fj;
      |   ~~~~^~~~~~~~~~~
sim4.c: In function ‘sim4x’:
sim4.c:2112:37: warning: ‘forth’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                                     ^
sim4.c:1609:18: note: ‘forth’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |                  ^~~~~
sim4.c:2112:22: warning: ‘back’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2112 |         if (m-min_row[back]>=max_row[forth]) {
      |                      ^
sim4.c:1609:12: note: ‘back’ was declared here
 1609 |   Int4     back, forth;            /* backward and forward limits at exit */
      |            ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF simutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from simutil.c:103:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
simutil.c: In function ‘make_align’:
simutil.c:495:9: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
  495 |   Uint1 strand;
      |         ^~~~~~
At top level:
simutil.c:848:16: warning: ‘is_alu_seq’ defined but not used [-Wunused-function]
  848 | static Boolean is_alu_seq(CharPtr name)
      |                ^~~~~~~~~~
simutil.c:814:16: warning: ‘re_cal_score’ defined but not used [-Wunused-function]
  814 | static FloatHi re_cal_score(RecordEndsPtr o_rep, RecordEndsPtr n_rep)
      |                ^~~~~~~~~~~~
simutil.c:344:17: warning: ‘convert’ defined but not used [-Wunused-function]
  344 | static ScorePtr convert(Int4Ptr x, Int4Ptr y, Int4Ptr start, Int4Ptr length, Int4 n, SeqLocPtr locx, SeqLocPtr locy, Int2Ptr numseg, FloatHiPtr SegScores)
      |                 ^~~~~~~
simutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: simutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
simutil.c: In function ‘sort_align_list’:
simutil.c:602:20: warning: ‘score2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  602 |                 if (score2 > score1) { /* swap */
      |                    ^
simutil.c:602:20: warning: ‘score1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
simutil.c: In function ‘get_top_K_alignment’:
simutil.c:659:16: warning: ‘score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  659 |             if (score < cut_off) break;
      |                ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF slist.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/list.h:56,
                 from slist.c:101:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
slist.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: slist.c,v 6.2 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF sec.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/simutil.h:77,
                 from sec.c:67:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sec.c: In function ‘Region’:
sec.c:268:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:268:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  268 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:292:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:292:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  292 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:321:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:321:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  321 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:345:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                    ~~~~^~~
sec.c:345:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  345 |     ext_score += V[seq1[i]][seq2[j]];
      |                             ~~~~^~~
sec.c:428:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                    ~~~~^~~
sec.c:428:49: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  428 |        diag_score = diag_score + V[seq1[i]][seq2[j]];
      |                                             ~~~~^~~
At top level:
sec.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: sec.c,v 6.1 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
sec.c: In function ‘Region’:
sec.c:504:11: warning: ‘old_l’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     LB[i] = old_l;
      |     ~~~~~~^~~~~~~
sec.c:72:37: warning: ‘ppj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
   72 | #define Min(x,y)  ((x) <= (y) ? (x) : (y))
      |                                     ^
sec.c:172:20: note: ‘ppj’ was declared here
  172 |  Int4 pi, pj, ppi, ppj;
      |                    ^~~
sec.c:172:15: warning: ‘ppi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |  Int4 pi, pj, ppi, ppj;
      |               ^~~
sec.c:172:7: warning: ‘pi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  172 |  Int4 pi, pj, ppi, ppj;
      |       ^~
sec.c:502:10: warning: ‘ej’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  502 |       tr = Min(cj + Width, ej);
      |          ^
sec.c:163:15: warning: ‘ei’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  163 |  Int4 bi, bj, ei, ej, t;
      |               ^~
sec.c:516:13: warning: ‘bj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  516 |       old_l = Max(tl,bj);
      |             ^
sec.c:462:16: warning: ‘bi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |                ^
sec.c:463:16: warning: ‘RB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |      MemFree(RB+bi);
      |              ~~^~~
sec.c:462:16: warning: ‘LB’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  462 |      MemFree(LB+bi);
      |              ~~^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF tfuns.c
tfuns.c: In function ‘find_orf’:
tfuns.c:866:26: warning: unused variable ‘into’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |                          ^~~~
tfuns.c:866:13: warning: unused variable ‘infrom’ [-Wunused-variable]
  866 |  IntFuzzPtr infrom=NULL, into=NULL;
      |             ^~~~~~
At top level:
tfuns.c:977:13: warning: ‘find_orf_from_circle’ defined but not used [-Wunused-function]
  977 | static void find_orf_from_circle (SeqPortPtr spp, Boolean flagIsCircle,
      |             ^~~~~~~~~~~~~~~~~~~~
tfuns.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: tfuns.c,v 6.17 2015/08/17 17:15:09 bollin Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toasn3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/gather.h:169,
                 from toasn3.c:10:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
toasn3.c: In function ‘FindOrg’:
toasn3.c:1444:17: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 1444 |     Int4        len;
      |                 ^~~
toasn3.c: In function ‘CheckQualsWithComm’:
toasn3.c:1731:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1731 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CheckQuals’:
toasn3.c:1768:18: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
 1768 |     OrgRefPtr    orp;
      |                  ^~~
toasn3.c: In function ‘CountSourceFeat’:
toasn3.c:2570:13: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 2570 |     Pointer pnt;
      |             ^~~
toasn3.c:2561:19: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
 2561 |     ValNodePtr    vnp;
      |                   ^~~
toasn3.c: In function ‘TASNTrimInternalSemicolons’:
toasn3.c:4155:12: warning: variable ‘tmp’ set but not used [-Wunused-but-set-variable]
 4155 |   CharPtr  tmp;
      |            ^~~
toasn3.c: In function ‘ImpFeatToProtRef’:
toasn3.c:4861:13: warning: variable ‘lfree’ set but not used [-Wunused-but-set-variable]
 4861 |     Boolean lfree = FALSE, partial5, partial3;
      |             ^~~~~
toasn3.c: In function ‘RemovePeptideImpFeats’:
toasn3.c:5160:24: warning: variable ‘ifp’ set but not used [-Wunused-but-set-variable]
 5160 |     ImpFeatPtr         ifp;
      |                        ^~~
At top level:
toasn3.c:1711:16: warning: ‘GetQualValue’ defined but not used [-Wunused-function]
 1711 | static CharPtr GetQualValue(GBQualPtr gbqual, CharPtr qual)
      |                ^~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from toasn3.c:19:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
toasn3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toasn3.c,v 6.150 2016/11/02 23:36:09 kans Exp $";
      |                   ^~~~~
toasn3.c: In function ‘FixNucProtSet’:
toasn3.c:2205:21: warning: ‘bseg’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2205 |         bseg->annot = sap;
      |         ~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF toporg.c
toporg.c: In function ‘ChkSegset’:
toporg.c:64:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
   64 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c:63:17: warning: variable ‘orp’ set but not used [-Wunused-but-set-variable]
   63 |   OrgRefPtr     orp;
      |                 ^~~
toporg.c:60:17: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   60 |   Pointer       pnt;
      |                 ^~~
toporg.c:55:17: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
   55 |   ValNodePtr    vnp = NULL, set_vnp = NULL, upd_date_vnp = NULL;
      |                 ^~~
toporg.c: In function ‘ChkNucProt’:
toporg.c:608:51: warning: variable ‘is_title’ set but not used [-Wunused-but-set-variable]
  608 |   Boolean       is_org = FALSE, is_modif = FALSE, is_title = FALSE;
      |                                                   ^~~~~~~~
toporg.c: In function ‘StripBSfromParts’:
toporg.c:1330:17: warning: variable ‘empty’ set but not used [-Wunused-but-set-variable]
 1330 |   Boolean       empty;
      |                 ^~~~~
toporg.c:1329:17: warning: variable ‘bsmp’ set but not used [-Wunused-but-set-variable]
 1329 |   BSMapPtr      bsmp;
      |                 ^~~~
toporg.c:1328:29: warning: variable ‘set_vnp’ set but not used [-Wunused-but-set-variable]
 1328 |   ValNodePtr    descr, vnp, set_vnp;
      |                             ^~~~~~~
toporg.c: In function ‘MapsToGenref’:
toporg.c:2021:17: warning: variable ‘loc’ set but not used [-Wunused-but-set-variable]
 2021 |   SeqLocPtr     loc;
      |                 ^~~
toporg.c:2016:17: warning: variable ‘descr’ set but not used [-Wunused-but-set-variable]
 2016 |   ValNodePtr    descr = NULL, head, last, vnp;
      |                 ^~~~~
toporg.c: In function ‘FindOldLineage’:
toporg.c:2606:17: warning: variable ‘lineage’ set but not used [-Wunused-but-set-variable]
 2606 |   CharPtr       lineage;
      |                 ^~~~~~~
toporg.c: In function ‘ArePubsMergeableForFig’:
toporg.c:4796:36: warning: logical not is only applied to the left hand side of comparison [-Wlogical-not-parentheses]
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |                                    ^~
toporg.c:4796:12: note: add parentheses around left hand side expression to silence this warning
 4796 |         || !cgp_fig->serial_number != cgp_nofig->serial_number) {
      |            ^~~~~~~~~~~~~~~~~~~~~~~
      |            (                      )
toporg.c: In function ‘StripBadTitleFromProteinProducts’:
toporg.c:5311:22: warning: variable ‘tech’ set but not used [-Wunused-but-set-variable]
 5311 |   Uint1              tech;
      |                      ^~~~
toporg.c: In function ‘FindPubWithFig’:
toporg.c:5647:10: warning: variable ‘a’ set but not used [-Wunused-but-set-variable]
 5647 |     Int4 a = 0;
      |          ^
toporg.c: In function ‘AddMissingGeneXref’:
toporg.c:5955:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 5955 |   Int2               count;
      |                      ^~~~~
toporg.c: In function ‘ConvertSegSetToDeltaSeqInt’:
toporg.c:7093:18: warning: unused variable ‘str’ [-Wunused-variable]
 7093 |   CharPtr        str, ttl = NULL;
      |                  ^~~
toporg.c:7086:18: warning: unused variable ‘ovp’ [-Wunused-variable]
 7086 |   ObjValNodePtr  ovp;
      |                  ^~~
At top level:
toporg.c:5475:13: warning: ‘SynchronizePseudogenesProc’ defined but not used [-Wunused-function]
 5475 | static void SynchronizePseudogenesProc (
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3119:13: warning: ‘BarCodeTechToKeyword’ defined but not used [-Wunused-function]
 3119 | static void BarCodeTechToKeyword (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~
toporg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: toporg.c,v 6.251 2016/11/02 23:36:10 kans Exp $";
      |                   ^~~~~
toporg.c: In function ‘MergeEquivCitSubs’:
toporg.c:3905:7: warning: ‘csp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3905 |   if (DateMatch (csp1->date, csp2->date, FALSE) != 0) return FALSE;
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
toporg.c:3925:18: note: ‘csp1’ was declared here
 3925 |   CitSubPtr      csp1, csp2;
      |                  ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pobutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pobutil.c: In function ‘build_repeat_feat’:
pobutil.c:187:7: warning: unused variable ‘c’ [-Wunused-variable]
  187 |  Char c='%';
      |       ^
pobutil.c: In function ‘merge_StdSeg’:
pobutil.c:1033:7: warning: variable ‘start_1’ set but not used [-Wunused-but-set-variable]
 1033 |  Int4 start_1, stop_1, start_2, stop_2;
      |       ^~~~~~~
pobutil.c:1031:7: warning: unused variable ‘overlap’ [-Wunused-variable]
 1031 |  Int4 overlap = -1;
      |       ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/pobutil.h:7,
                 from pobutil.c:3:
pobutil.c: In function ‘FindHumanRepeats’:
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2380:2: note: in expansion of macro ‘MemSet’
 2380 |  MemSet((Pointer) (&tmp), sizeof(ValNode), 0);
      |  ^~~~~~
../include/ncbimem.h:191:21: warning: ‘memset’ used with constant zero length parameter; this could be due to transposed parameters [-Wmemset-transposed-args]
  191 | #define Nlm_MemSet  memset
      |                     ^~~~~~
../include/ncbimem.h:210:17: note: in expansion of macro ‘Nlm_MemSet’
  210 | #define MemSet  Nlm_MemSet
      |                 ^~~~~~~~~~
pobutil.c:2381:2: note: in expansion of macro ‘MemSet’
 2381 |  MemSet((Pointer) (&si), sizeof(SeqInt), 0);
      |  ^~~~~~
pobutil.c: In function ‘AluFeat’:
pobutil.c:2431:10: warning: variable ‘my_userdata’ set but not used [-Wunused-but-set-variable]
 2431 |  Pointer my_userdata;
      |          ^~~~~~~~~~~
At top level:
pobutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pobutil.c,v 6.10 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF stsutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from stsutil.c:88:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
stsutil.c: In function ‘InitSTSSearch_r’:
stsutil.c:270:10: warning: unused variable ‘StsCount’ [-Wunused-variable]
  270 |     Int4 StsCount=0;
      |          ^~~~~~~~
stsutil.c: In function ‘GetSTSEntry’:
stsutil.c:635:13: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
  635 |     CharPtr p;
      |             ^
stsutil.c: In function ‘STSCalculateHash’:
stsutil.c:753:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  753 |         if ((j = HashCode[*p++]) < 0)
      |                           ^~~~
stsutil.c: In function ‘STSReverse’:
stsutil.c:771:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  771 |         if ((*t = ComplCode[*s]) == 0)
      |                             ^~
stsutil.c: In function ‘InitHashTable’:
stsutil.c:910:21: warning: variable ‘sts_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |                     ^~~~~~~
stsutil.c:910:13: warning: variable ‘gb_uid’ set but not used [-Wunused-but-set-variable]
  910 |     CharPtr gb_uid, sts_uid;
      |             ^~~~~~
stsutil.c:908:23: warning: variable ‘gi’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |                       ^~
stsutil.c:908:10: warning: variable ‘id_sts’ set but not used [-Wunused-but-set-variable]
  908 |     Int4 id_sts, len, gi, StsCount = 0, StsInvalid =0;
      |          ^~~~~~
stsutil.c:907:23: warning: unused variable ‘error’ [-Wunused-variable]
  907 |     Int4  LineLength, error= FALSE;
      |                       ^~~~~
At top level:
stsutil.c:892:13: warning: ‘STSHashInitFree’ defined but not used [-Wunused-function]
  892 | static void STSHashInitFree(STSHashInitPtr sts)
      |             ^~~~~~~~~~~~~~~
stsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: stsutil.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggadj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggadj.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggadj.c: In function ‘score_possible_splice_sites’:
suggadj.c:874:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  874 | score = ( vx[seq_or_rev[putative_donor]]==3) ?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:875:24: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  875 | score += (vx[seq_or_rev[putative_acceptor]]==3 )?10:0;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~
suggadj.c:878:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  878 | score += ( vx[seq_or_rev[putative_donor+1]]==0 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
suggadj.c:879:25: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  879 | score += ( vx[seq_or_rev[putative_acceptor-1]]==2 )?3:0;
      |               ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c: In function ‘check_split_codon’:
suggadj.c:985:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  985 | val_assuming_1_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:986:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  986 |  vx[seq_or_rev[right_starts-2]]*4+
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:987:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  987 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:998:40: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  998 | val_assuming_2_from_left= vx[seq_or_rev[left_ends+1]] * 16 +
      |                              ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:999:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  999 |  vx[seq_or_rev[left_ends+2]] * 4 +
      |     ~~~~~~~~~~^~~~~~~~~~~~~
suggadj.c:1000:15: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1000 |  vx[seq_or_rev[right_starts-1]];
      |     ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c: In function ‘overlapping_fixer’:
suggadj.c:1370:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1370 |     test_val = vx[seq_or_rev[left_exon_ends]]*16 +
      |                   ~~~~~~~~~~^~~~~~~~~~~~~~~~
suggadj.c:1371:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1371 |      vx[seq_or_rev[right_exon_starts-1]];
      |         ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1373:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1373 |      test_val += vx[seq_or_rev[right_exon_starts-2]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~
suggadj.c:1375:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1375 |      test_val += vx[seq_or_rev[left_exon_ends+1]]*4;
      |                     ~~~~~~~~~~^~~~~~~~~~~~~~~~~~
At top level:
suggadj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggadj.c,v 6.3 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggest.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggest.c:199:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggest.c: In function ‘get_frames’:
suggest.c:458:14: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |             ~^~~
suggest.c:458:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  458 |    val = vx[t[0]]*16 + vx[t[1]]*4 + vx[(t==t_max)?'N':t[2]];
      |                           ~^~~
At top level:
suggest.c:1331:13: warning: ‘ReportSuggestIntervalsError’ defined but not used [-Wunused-function]
 1331 | static void ReportSuggestIntervalsError (SeqRecPtr srp, CharPtr gen_txt)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
suggest.c:1222:1: warning: ‘fprintf_m_stk_entry’ defined but not used [-Wunused-function]
 1222 | fprintf_m_stk_entry(FILE *fp, Int4 index, char *msg)
      | ^~~~~~~~~~~~~~~~~~~
suggest.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggest.c,v 6.14 2009/04/10 17:22:14 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF suggslp.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from suggslp.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
suggslp.c: In function ‘MakeReverseSequence’:
suggslp.c:190:12: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  190 |   *t++ = r[*--s];
      |            ^~~~
At top level:
suggslp.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: suggslp.c,v 6.6 2009/04/16 18:35:41 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blast.c:2572:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast.c: In function ‘BlastReevaluateWithAmbiguities’:
blast.c:2954:24: warning: variable ‘query_end’ set but not used [-Wunused-but-set-variable]
 2954 |  Uint1Ptr query_start, query_end, subject_real_start=NULL;
      |                        ^~~~~~~~~
blast.c:2949:16: warning: variable ‘hspcnt’ set but not used [-Wunused-but-set-variable]
 2949 |  Int4 context, hspcnt, hspcnt_max, index, index1, status;
      |                ^~~~~~
blast.c: In function ‘BlastGetVirtualOIDList’:
blast.c:3179:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3179 |         if (virtual_oidlist = rdfp_chain->oidlist) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastGetDbChunk’:
blast.c:3210:13: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
 3210 |         if (virtual_oidlist = BlastGetVirtualOIDList(rdfp)) {
      |             ^~~~~~~~~~~~~~~
blast.c: In function ‘BlastCreateQueryDNAP’:
blast.c:4100:11: warning: variable ‘strand_option’ set but not used [-Wunused-but-set-variable]
 4100 |     Uint1 strand_option;
      |           ^~~~~~~~~~~~~
blast.c: In function ‘BlastReapPartialHitlistByEvalue’:
blast.c:6486:10: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 6486 |          else
      |          ^~~~
blast.c:6490:6: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 6490 |      if( !search->mult_queries )
      |      ^~
blast.c: In function ‘BlastWordFinder_contig’:
blast.c:7094:16: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 7094 |  register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                ^~~~~~~~~~~~~
blast.c: In function ‘BlastWordExtend’:
blast.c:7835:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7835 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNewWordExtend’:
blast.c:7982:46: warning: variable ‘leftscore’ set but not used [-Wunused-but-set-variable]
 7982 |  BLAST_Score  leftsum, rightsum, rightscore, leftscore;
      |                                              ^~~~~~~~~
blast.c: In function ‘BlastNtWordFinder_mh’:
blast.c:8843:23: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 8843 |         register Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |                       ^~~~~~~~~~~~~
blast.c:8842:103: warning: variable ‘compression_factor’ set but not used [-Wunused-but-set-variable]
 8842 |         Int4            s_pos, q_off, s_off, offset, virtual_wordsize, wordsize, compressed_wordsize, compression_factor;
      |                                                                                                       ^~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastNtWordFinder’:
blast.c:9076:14: warning: variable ‘bits_to_shift’ set but not used [-Wunused-but-set-variable]
 9076 |         Int4 bits_to_shift, min_diag_length, min_diag_mask;
      |              ^~~~~~~~~~~~~
blast.c: In function ‘BlastSaveCurrentHitlist’:
blast.c:10115:11: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
10115 |         if( hitlist_max > 1 )
      |           ^
blast.c:9785:7: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9785 |  Int4 query_length;
      |       ^~~~~~~~~~~~
blast.c: In function ‘SumHSPEvalue’:
blast.c:10588:9: warning: variable ‘gap_size’ set but not used [-Wunused-but-set-variable]
10588 |    Int4 gap_size, num, subject_length;
      |         ^~~~~~~~
blast.c: In function ‘link_hsps’:
blast.c:11267:10: warning: variable ‘frame_change’ set but not used [-Wunused-but-set-variable]
11267 |  Boolean frame_change, linked_set, ignore_small_gaps;
      |          ^~~~~~~~~~~~
At top level:
blast.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast.c,v 6.451 2008/01/25 21:15:22 bealer Exp $";
      |                   ^~~~~
blast.c: In function ‘blastMergeFilterLocs’:
blast.c:3985:16: warning: ‘dup_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3985 |        dup_slp = (SeqLocPtr) dup_slp->data.ptrvalue;
      |        ~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast.c: In function ‘BlastLinkHsps’:
blast.c:10455:41: warning: ‘orig_hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
10455 |                 search->current_hitlist = orig_hitlist;
      |                 ~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastutl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastutl.c:1836:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastutl.c: In function ‘BlastSeqLocFilterEx’:
blastutl.c:7554:11: warning: statement with no effect [-Wunused-value]
 7554 | stop_timer("after repeat filtering");
      |           ^
blastutl.c: In function ‘BlastPreliminaryGappedScore’:
blastutl.c:9853:30: warning: variable ‘query_length’ set but not used [-Wunused-but-set-variable]
 9853 |  Int4 index, max_offset = 0, query_length, min_score;
      |                              ^~~~~~~~~~~~
blastutl.c: In function ‘BlastGetGappedScore’:
blastutl.c:10282:11: warning: statement with no effect [-Wunused-value]
10282 | stop_timer("after BlastGappedScoreInternal");
      |           ^
At top level:
blastutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastutl.c,v 6.472 2010/12/10 18:47:12 madden Exp $";
      |                   ^~~~~
blastutl.c: In function ‘BlastNtFindWords’:
blastutl.c:11445:10: warning: ‘end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11445 |      end = MIN(end, len-initial_wordsize);
blastutl.c: In function ‘BlastFindWords’:
blastutl.c:11522:43: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11522 |  Int4    loop_increment, loop_increment2, stop;
      |                                           ^~~~
blastutl.c:11711:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11711 |     start_score2 += matrix[(Int4) *(str+index2)][*(words+index2)];
      |     ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11704:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11704 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11695:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11695 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWords_Old’:
blastutl.c:11931:18: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11931 |     start_score2 += MtrxScorePosSearch(search->sbp,
blastutl.c:11924:17: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11924 |     start_score = second_score+first_score;
      |     ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:11915:11: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11915 |     diff2 += diff;
      |     ~~~~~~^~~~~~~
blastutl.c: In function ‘BlastNewFindWordsEx’:
blastutl.c:12124:30: warning: ‘start_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12124 |                 start_score2 += posMatrix[offset+index2][*(words+index2)];
      |                 ~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12118:29: warning: ‘first_score’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12118 |                 start_score = second_score + first_score;
      |                 ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~
blastutl.c:12110:23: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
12110 |                 diff2 += diff;
      |                 ~~~~~~^~~~~~~
blastutl.c: In function ‘RealBlastGetGappedAlignmentTraceback’:
blastutl.c:9008:42: warning: ‘seqalign_array’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9008 |     SeqAlignPtr seqalign, seqalign_var, *seqalign_array;
      |                                          ^~~~~~~~~~~~~~
blastutl.c: In function ‘SumBlastGetGappedAlignmentEx’:
blastutl.c:9670:33: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 9670 |   HeapSort(hsp_array+start,(stop-start),sizeof(BLAST_HSPPtr), score_compare_hsps);
      |                            ~~~~~^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastool.c:946:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastool.c: In function ‘BlastScaleMatrix’:
blastool.c:3032:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 3032 |     else
      |     ^~~~
blastool.c:3035:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 3035 |  if (new_lambda > lambda)
      |  ^~
blastool.c: In function ‘OOFBlastHSPGetNumIdentical’:
blastool.c:6081:9: warning: variable ‘context’ set but not used [-Wunused-but-set-variable]
 6081 |    Int2 context;
      |         ^~~~~~~
At top level:
blastool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastool.c,v 6.292 2007/03/15 20:39:17 madden Exp $";
      |                   ^~~~~
blastool.c: In function ‘BlastInsertList2Heap’:
blastool.c:3595:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3595 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BlastFreeHeap’:
blastool.c:3687:31: warning: ‘query_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3687 |   context = hsp->query_offset / query_length;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~
blastool.c: In function ‘BLASTFilterOverlapRegions’:
blastool.c:4531:24: warning: ‘next_tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4531 |             tail->next = seqalign;
      |             ~~~~~~~~~~~^~~~~~~~~~
blastool.c: In function ‘BlastPrintAlignInfo’:
blastool.c:4800:23: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 4800 |             sap->next = SeqAlignNew();
      |             ~~~~~~~~~~^~~~~~~~~~~~~~~
blastool.c: In function ‘MegaBlastPrintAlignInfo’:
blastool.c:963:17: warning: ‘subject_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:30: note: ‘subject_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |                              ^~~~~~~~~~~~~~~~~~
blastool.c:963:17: warning: ‘query_seq_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  963 | #define fprintf blastool_fprintf
      |                 ^~~~~~~~~~~~~~~~
blastool.c:5046:12: note: ‘query_seq_buffer’ was declared here
 5046 |    CharPtr query_seq_buffer, subject_seq_buffer;
      |            ^~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastconcat.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastconcat.c:89:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastconcat.c: In function ‘BlastMakeFakeBspConcat’:
blastconcat.c:648:12: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
  648 |  SeqLocPtr slp = NULL;
      |            ^~~
At top level:
blastconcat.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastconcat.c,v 1.14 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF splutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from splutil.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
splutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: splutil.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapxdrop.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/gapxdrop.h:150,
                 from gapxdrop.c:368:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gapxdrop.c: In function ‘ALIGN_EX’:
gapxdrop.c:864:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  864 |       if (s == 1)
      |          ^
gapxdrop.c:867:10: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  867 |       if (s == 2)
      |          ^
At top level:
gapxdrop.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: gapxdrop.c,v 6.76 2003/11/07 21:52:52 dondosha Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg0.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg0.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg0.c: In function ‘g_band0_align’:
bandalg0.c:273:9: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  273 |       if(leftd >= 1)
      |         ^
At top level:
bandalg0.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg0.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg1.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg1.c: In function ‘gband_quadratic’:
bandalg1.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
bandalg1.c: In function ‘g_band1_align’:
bandalg1.c:205:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  205 |     if(leftd >= 1)
      |       ^
At top level:
bandalg1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg1.c,v 6.3 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg2.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:208:24: warning: variable ‘misma’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                        ^~~~~
bandalg2.c:208:17: warning: variable ‘match’ set but not used [-Wunused-but-set-variable]
  208 |   register Int4 match, misma;
      |                 ^~~~~
bandalg2.c:207:18: warning: variable ‘AA’ set but not used [-Wunused-but-set-variable]
  207 |   register Uint1 AA;
      |                  ^~
At top level:
bandalg2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg2.c,v 6.5 2003/05/30 17:25:35 coulouri Exp $";
      |                   ^~~~~
bandalg2.c: In function ‘gb_linear_align’:
bandalg2.c:202:38: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  202 |   Int4 rmid, k =0, l=0, r, v, kt, X, Y;
      |                                      ^
In file included from bandalg2.c:36:
../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k));
      |                                                                            ^
bandalg2.c:202:35: note: ‘X’ was declared here
  202 |   Int4 rmid, k =0, l=0, r, v, kt, X, Y;
      |                                   ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg3.c:37:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:54:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   54 |   Int4 c, i, j;
      |              ^
At top level:
bandalg3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg3.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg3.c: In function ‘gband_linear_qgap’:
bandalg3.c:185:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  185 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg3.c:313:21: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  313 |   if(X != M) _DEL(M - X)
      |                     ^
bandalg3.c:185:25: note: ‘X’ was declared here
  185 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg4.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg4.c:37:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg4.c: In function ‘g_band4_align_small’:
bandalg4.c:826:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  826 |     if (e == 1)
      |        ^
bandalg4.c:829:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  829 |     if (e == 2)
      |        ^
bandalg4.c:630:8: warning: variable ‘band’ set but not used [-Wunused-but-set-variable]
  630 |   Int4 band, j;
      |        ^~~~
At top level:
bandalg4.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg4.c,v 6.4 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg4.c: In function ‘g_band4_align’:
bandalg4.c:534:17: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |          ~~~~~~~^~~~~~~~~
bandalg4.c:534:9: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  534 |       if(X != M || Y != N) regA = regB = 1;
      |         ^
bandalg4.c:562:7: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  562 |       g_band4_align(A, B, r - 1, r + rmid, rmid + 1,
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  563 |      MIN(up, r + rmid), tb, 1, legA, legB, 1, 1, data);
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
bandalg4.c:640:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  640 |   Int4 ib, best=MININT, X, Y;
      |                            ^
In file included from bandalg4.c:37:
../include/bandalgn.h:140:76: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 | data->last = (data->last < 0) ? (data->sapp[-1] -= (k)) : (*data->sapp++ = -(k));
      |                                                                            ^
bandalg4.c:640:25: note: ‘X’ was declared here
  640 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalg5.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/bandalgn.h:73,
                 from bandalg5.c:36:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:56:14: warning: variable ‘j’ set but not used [-Wunused-but-set-variable]
   56 |   Int4 c, i, j;
      |              ^
bandalg5.c: In function ‘g_band5_align’:
bandalg5.c:292:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  292 |     if (e == 1)
      |        ^
bandalg5.c:295:8: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
  295 |     if (e == 2)
      |        ^
At top level:
bandalg5.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalg5.c,v 6.3 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalg5.c: In function ‘gband_q3gap’:
bandalg5.c:146:28: warning: ‘Y’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  146 |   Int4 ib, best=MININT, X, Y;
      |                            ^
bandalg5.c:319:22: warning: ‘X’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  319 |   if (X != M) _DEL(M - X);
      |                      ^
bandalg5.c:146:25: note: ‘X’ was declared here
  146 |   Int4 ib, best=MININT, X, Y;
      |                         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bandalgn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from bandalgn.c:118:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bandalgn.c: In function ‘ExtendSeqAlign’:
bandalgn.c:1113:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1113 |        DenseDiagPtr  ddp;
      |                      ^~~
bandalgn.c: In function ‘CC_ExtendSeqAlign’:
bandalgn.c:1188:22: warning: variable ‘ddp’ set but not used [-Wunused-but-set-variable]
 1188 |        DenseDiagPtr  ddp;
      |                      ^~~
At top level:
bandalgn.c:699:14: warning: ‘HSblastna_to_ncbi4na’ defined but not used [-Wunused-variable]
  699 | static Uint1 HSblastna_to_ncbi4na[] = {   1, /* A, 0 */
      |              ^~~~~~~~~~~~~~~~~~~~
bandalgn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bandalgn.c,v 6.17 2003/05/30 17:25:36 coulouri Exp $";
      |                   ^~~~~
bandalgn.c: In function ‘LocalBandToEditBlock’:
bandalgn.c:463:20: warning: ‘edit_block’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  463 |   lbsp->edit_block = edit_block;
      |   ~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
bandalgn.c: In function ‘SetLowUpFromBlast’:
bandalgn.c:1053:7: warning: ‘val’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |    if (maxsc < val) {
      |       ^
bandalgn.c:1060:7: warning: ‘alnlen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1060 |    if (maxlen < alnlen) {
      |       ^
bandalgn.c:1070:9: warning: ‘maxdi_up’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1070 |    maxy = MAX(maxy,maxdi_up);
bandalgn.c:1069:9: warning: ‘mindi_low’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1069 |    miny = MIN(miny,mindi_low);
bandalgn.c:1055:10: warning: ‘maxdi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1055 |     maxy = maxdi + width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c:1056:10: warning: ‘mindi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1056 |     miny = mindi - width;
      |     ~~~~~^~~~~~~~~~~~~~~
bandalgn.c: In function ‘GetAlignExtremes’:
bandalgn.c:1309:7: warning: ‘y2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |  *yy2 = y2;
      |  ~~~~~^~~~
bandalgn.c:1308:7: warning: ‘y1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1308 |  *yy1 = y1;
      |  ~~~~~^~~~
bandalgn.c:1307:7: warning: ‘x2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1307 |  *xx2 = x2;
      |  ~~~~~^~~~
bandalgn.c:1306:7: warning: ‘x1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1306 |  *xx1 = x1;
      |  ~~~~~^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blastkar.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blastkar.c:2373:25: warning: ‘Altschul_prob’ defined but not used [-Wunused-variable]
 2373 | static BLAST_LetterProb Altschul_prob[] = {
      |                         ^~~~~~~~~~~~~
blastkar.c:2347:25: warning: ‘Dayhoff_prob’ defined but not used [-Wunused-variable]
 2347 | static BLAST_LetterProb Dayhoff_prob[] = {
      |                         ^~~~~~~~~~~~
blastkar.c:1121:13: warning: ‘blosum62_20_prefs’ defined but not used [-Wunused-variable]
 1121 | static Int4 blosum62_20_prefs[BLOSUM62_20_VALUES_MAX] = {
      |             ^~~~~~~~~~~~~~~~~
blastkar.c:1053:21: warning: ‘blosum62_20_values’ defined but not used [-Wunused-variable]
 1053 | static Nlm_FloatHi  blosum62_20_values[BLOSUM62_20_VALUES_MAX][8] = {
      |                     ^~~~~~~~~~~~~~~~~~
blastkar.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blastkar.c,v 6.115 2006/12/14 17:08:19 madden Exp $";
      |                   ^~~~~
blastkar.c: In function ‘BlastScoreBlkMatCreate’:
blastkar.c:1574:36: warning: ‘ ’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1574 |  sprintf(buffer, "blastn matrix:%ld %ld", (long) sbp->reward, (long) sbp->penalty);
      |                                    ^
blastkar.c:1574:18: note: directive argument in the range [-2147483648, 2147483647]
 1574 |  sprintf(buffer, "blastn matrix:%ld %ld", (long) sbp->reward, (long) sbp->penalty);
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from blastkar.c:648:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 18 and 38 bytes into a destination of size 25
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF actutils.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
actutils.c: In function ‘SlideToHit’:
actutils.c:346:23: warning: variable ‘done’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |                       ^~~~
actutils.c:346:13: warning: variable ‘inIsland’ set but not used [-Wunused-but-set-variable]
  346 |     Boolean inIsland, done;
      |             ^~~~~~~~
actutils.c: In function ‘ResolveSpinConflict’:
actutils.c:1484:35: warning: unused variable ‘row2_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |                                   ^~~~~~~~~~~~~
actutils.c:1484:12: warning: unused variable ‘row1_conflict’ [-Wunused-variable]
 1484 |    Boolean row1_conflict = FALSE, row2_conflict = FALSE;
      |            ^~~~~~~~~~~~~
actutils.c: In function ‘ACT_FindBestAlnByDotPlot’:
actutils.c:2002:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2002 |    Uint1           strand;
      |                    ^~~~~~
actutils.c:2001:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2001 |    Int4            start2;
      |                    ^~~~~~
actutils.c:2000:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2000 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from actutils.c:232:
actutils.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
actutils.c:3132:13: warning: ‘DumpAlignments’ defined but not used [-Wunused-function]
 3132 | static void DumpAlignments (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~
actutils.c:2927:13: warning: ‘MapBioseqToBioseqSpecial’ defined but not used [-Wunused-function]
 2927 | static Int4 MapBioseqToBioseqSpecial(SeqAlignPtr sap, Int4 begin, Int4 fin, Int4 pos, Int4 which_end)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
actutils.c:1654:16: warning: ‘SpinsConflict’ defined but not used [-Wunused-function]
 1654 | static Boolean SpinsConflict (SQN_nPtr spin1, SQN_nPtr spin2, Int4 fuzz, Int4 strand)
      |                ^~~~~~~~~~~~~
actutils.c:1392:13: warning: ‘am_fix_strand’ defined but not used [-Wunused-function]
 1392 | static void am_fix_strand(SeqAlignPtr sap, Uint1 strand1, Uint1 strand2)
      |             ^~~~~~~~~~~~~
actutils.c:1375:16: warning: ‘am_isa_gap’ defined but not used [-Wunused-function]
 1375 | static Boolean am_isa_gap(Int4 start, Int4 prevstop, Uint1 strand)
      |                ^~~~~~~~~~
actutils.c:749:13: warning: ‘StateTableSearch’ defined but not used [-Wunused-function]
  749 | static void StateTableSearch (TextFsaPtr tbl, CharPtr txt, Int4Ptr state, Int4 pos, ACT_sitelistPtr PNTR asp_prev, ACT_sitelistPtr PNTR asp_head)
      |             ^~~~~~~~~~~~~~~~
actutils.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: actutils.c,v 6.56 2008/10/22 17:19:22 bollin Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/actutils.h:103,
                 from actutils.c:232:
actutils.c: In function ‘GetOldBlastAlignmentPiece’:
../include/ncbimem.h:232:23: warning: ‘program’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
actutils.c:3089:25: note: ‘program’ was declared here
 3089 |    CharPtr              program;
      |                         ^~~~~~~
actutils.c: In function ‘ACT_FindPeakScores’:
actutils.c:1342:31: warning: ‘ats_newprev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1342 |             ats_newprev->next = ats_new;
      |             ~~~~~~~~~~~~~~~~~~^~~~~~~~~
actutils.c:1321:28: warning: ‘ats_prev’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1321 |             ats_prev->next = ats;
      |             ~~~~~~~~~~~~~~~^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit.c:402:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit.c: In function ‘posDemographics’:
posit.c:1110:17: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1110 |    Int4 numseq, numSeqAligns;  /*number of matching sequences and SeqAligns*/
      |                 ^~~~~~~~~~~~
posit.c: In function ‘posFreqsToMatrix’:
posit.c:1679:45: warning: operation on ‘*(*(posSearch->posPrivateMatrix + (sizetype)((long unsigned int)length * 8)) + (sizetype)((long unsigned int)a * 4))’ may be undefined [-Wsequence-point]
 1679 |      posSearch->posPrivateMatrix[length][a] = posSearch->posPrivateMatrix[length][a] = BLAST_SCORE_MIN;
posit.c: In function ‘posComputePseudoFreqs’:
posit.c:1840:16: warning: variable ‘lambda’ set but not used [-Wunused-but-set-variable]
 1840 |    Nlm_FloatHi lambda; /*Karlin-Altschul parameter*/
      |                ^~~~~~
posit.c: In function ‘WposComputation’:
posit.c:1988:13: warning: variable ‘numSeqAligns’ set but not used [-Wunused-but-set-variable]
 1988 |     Int4 i, numSeqAligns, numseq, qlength;
      |             ^~~~~~~~~~~~
posit.c: In function ‘posPrintInformation’:
posit.c:2319:8: warning: variable ‘querySize’ set but not used [-Wunused-but-set-variable]
 2319 |   Int4 querySize;
      |        ^~~~~~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3064:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3064 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3070:5: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3070 |     fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3079:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3079 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3086:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3086 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posPreprocessAlignment’:
posit.c:3137:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3137 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c:3152:7: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3152 |       fgets(nextLine, ALIGN_LINE_LENGTH,checkFile);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
posit.c: In function ‘posReadAlignment’:
posit.c:3253:2: warning: ignoring return value of ‘fgets’, declared with attribute warn_unused_result [-Wunused-result]
 3253 |  fgets(nextline, ALIGN_LINE_LENGTH,checkFile);
      |  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
posit.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit.c,v 6.88 2011/10/25 14:33:16 boratyng Exp $";
      |                   ^~~~~
posit.c: In function ‘posFindAlignmentDimensions’:
posit.c:3090:20: warning: ‘testCountSeqs’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3090 |       testCountSeqs++;
      |       ~~~~~~~~~~~~~^~
posit.c: In function ‘posComputeSequenceWeights’:
posit.c:1447:36: warning: ‘intervalSigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1447 |        posSearch->posSigma[qplace] = intervalSigma;
      |        ~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~
posit.c:1424:11: warning: ‘Sigma’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1424 |        if (Sigma > 0) {
      |           ^
posit.c: In function ‘posReadCheckpoint’:
posit.c:2873:28: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2873 |   if (i < pssm->numColumns || j < pssm->numRows) {
      |       ~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~
posit.c:2702:11: note: ‘j’ was declared here
 2702 |   Int4 i, j, c;
      |           ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from lookup.c:308:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/blastdef.h:922,
                 from ../include/blast.h:470,
                 from lookup.c:309:
lookup.c: In function ‘MegaBlastBuildLookupTable’:
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1047:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1047 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1051:35: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1051 |                                   GET_EXTRA_CODE_18_OPT(seq)) & no_bit0;
      |                                   ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1078:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1078 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
../include/lookup.h:299:61: warning: suggest parentheses around arithmetic in operand of ‘|’ [-Wparentheses]
  299 | #define GET_EXTRA_CODE_18_OPT(s) (((*(s+1))<<2) | (*(s+2))) & MASK_EXTRA_OPT
      |                                                             ^
lookup.c:1082:31: note: in expansion of macro ‘GET_EXTRA_CODE_18_OPT’
 1082 |                               GET_EXTRA_CODE_18_OPT(seq) | bit0;
      |                               ^~~~~~~~~~~~~~~~~~~~~
lookup.c:914:25: warning: variable ‘extra_code’ set but not used [-Wunused-but-set-variable]
  914 |    register Int4 ecode, extra_code;
      |                         ^~~~~~~~~~
At top level:
lookup.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: lookup.c,v 6.59 2005/07/28 14:57:10 coulouri Exp $";
      |                   ^~~~~
lookup.c: In function ‘MegaBlastBuildLookupTable’:
lookup.c:975:10: warning: ‘word_weight’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  975 |       if (word_weight >= 12) {
      |          ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF readdb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
readdb.c: In function ‘readdb_parse_db_names’:
readdb.c:2503:12: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 2503 |         if (**filenames == '"')
      |            ^
readdb.c: In function ‘s_GetBlastDirInfo’:
readdb.c:2734:32: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 2734 |     memset(blast_dir, 0, sizeof(blast_dir));
      |                                ^
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3167:33: warning: format ‘%lld’ expects argument of type ‘long long int *’, but argument 3 has type ‘Nlm_Int8 *’ {aka ‘long int *’} [-Wformat=]
 3167 |                 sscanf(ptr, "%lld", &(rdbap->len));
      |                              ~~~^   ~~~~~~~~~~~~~
      |                                 |   |
      |                                 |   Nlm_Int8 * {aka long int *}
      |                                 long long int *
      |                              %ld
readdb.c: In function ‘IndexFileExists’:
readdb.c:3320:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3320 |         if (rdfp->cih)
      |         ^~
readdb.c:3326:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3326 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c:3400:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3400 |         if (rdfp->cih && rdfp->aliasfilebit == 0)
      |         ^~
readdb.c:3406:13: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3406 |             if (rdbap->first_oid > 0) {
      |             ^~
readdb.c: In function ‘FindBlastDBFileEx’:
readdb.c:3480:33: warning: unused variable ‘envp’ [-Wunused-variable]
 3480 |     CharPtr    buffer, buffer1, envp = NULL;
      |                                 ^~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3558:25: warning: unused variable ‘envp’ [-Wunused-variable]
 3558 |     CharPtr    charptr, envp = NULL;
      |                         ^~~~
readdb.c: In function ‘readdb_get_link’:
readdb.c:4752:12: warning: variable ‘loaded_new’ set but not used [-Wunused-but-set-variable]
 4752 |    Boolean loaded_new = FALSE;
      |            ^~~~~~~~~~
readdb.c:4751:24: warning: variable ‘last_used’ set but not used [-Wunused-but-set-variable]
 4751 |    ReadDBFILEPtr last, last_used, rdfp_var;
      |                        ^~~~~~~~~
readdb.c: In function ‘readdb_check_oid’:
readdb.c:4896:38: warning: comparisons like ‘X<=Y<=Z’ do not have their mathematical meaning [-Wparentheses]
 4896 |                  if (rdfp_var->start <= oid <= rdfp_var->stop)
      |                      ~~~~~~~~~~~~~~~~^~~~~~
readdb.c: In function ‘readdb_seqid2fasta’:
readdb.c:5236:22: warning: unused variable ‘dummy_gi’ [-Wunused-variable]
 5236 |                 Int4 dummy_gi = 0; /* Not used, should have been handled above. */
      |                      ^~~~~~~~
readdb.c:5180:13: warning: unused variable ‘chptr’ [-Wunused-variable]
 5180 |     CharPtr chptr = NULL;
      |             ^~~~~
readdb.c: In function ‘FDBuildOldStyleDefline’:
readdb.c:6366:33: warning: argument to ‘sizeof’ in ‘memset’ call is the same expression as the destination; did you mean to provide an explicit length? [-Wsizeof-pointer-memaccess]
 6366 |     MemSet(defline, '\0', sizeof(defline));
      |                                 ^
readdb.c: In function ‘PrintDbInformationWithRID’:
readdb.c:7571:14: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 7571 |     if (rdfp == FALSE)
      |              ^~
readdb.c:7571:9: note: did you mean to dereference the pointer?
 7571 |     if (rdfp == FALSE)
      |         ^
readdb.c: In function ‘FDBLoadMembershipsTable’:
readdb.c:8265:21: warning: variable ‘fn_name’ set but not used [-Wunused-but-set-variable]
 8265 |         const char* fn_name = NULL;
      |                     ^~~~~~~
readdb.c: In function ‘SeqIdE2Index’:
readdb.c:8613:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8613 |     if ((tsip->version > 0) && (tsip->release == NULL))
      |     ^~
readdb.c:8615:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8615 |         break;
      |         ^~~~~
readdb.c:8618:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 8618 |     if (tsip->version > 0)
      |     ^~
readdb.c:8620:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 8620 |         break;
      |         ^~~~~
readdb.c:8577:13: warning: unused variable ‘tmp’ [-Wunused-variable]
 8577 |     CharPtr tmp, ptr=NULL;
      |             ^~~
readdb.c:8576:11: warning: unused variable ‘tmptype’ [-Wunused-variable]
 8576 |     Uint1 tmptype;
      |           ^~~~~~~
readdb.c: In function ‘SeqIdSetE2Index’:
readdb.c:8881:14: warning: variable ‘oldanp’ set but not used [-Wunused-but-set-variable]
 8881 |     SeqIdPtr oldanp;
      |              ^~~~~~
readdb.c: In function ‘FindDBbyGI’:
readdb.c:11397:4: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
11397 |    if (gi > cih->maxgi)
      |    ^~
readdb.c:11400:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
11400 |     cigi = cih->ci + gi;
      |     ^~~~
readdb.c: In function ‘Fastacmd_Search_ex’:
readdb.c:12080:22: warning: variable ‘guess_gi’ set but not used [-Wunused-but-set-variable]
12080 |     Int4             guess_gi = -1;
      |                      ^~~~~~~~
readdb.c: In function ‘DumpOneSequence’:
readdb.c:12407:20: warning: format ‘%d’ expects argument of type ‘int’, but argument 3 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
12407 |      fprintf(fp, "%d\n", gi->data.intvalue);
      |                   ~^     ~~~~~~~~~~~~~~~~~
      |                    |             |
      |                    int           Nlm_Int8 {aka long int}
      |                   %ld
readdb.c:12417:14: warning: unused variable ‘numeric_id’ [-Wunused-variable]
12417 |      Boolean numeric_id = GetAccessionVersionFromSeqId(accn, &gi, &id, TRUE);
      |              ^~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from readdb.c:2067:
readdb.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
readdb.c:12829:1: warning: ‘readdb_preload_index’ defined but not used [-Wunused-function]
12829 | readdb_preload_index (ReadDBFILEPtr rdfp, Int4 first_db_seq,
      | ^~~~~~~~~~~~~~~~~~~~
In file included from readdb.c:2060:
../include/ncbisami.h:191:14: warning: ‘OneBit’ defined but not used [-Wunused-variable]
  191 | static Uint1 OneBit[] = {0x80 , 0x40, 0x20, 0x10, 0x8, 0x4, 0x2, 0x1};
      |              ^~~~~~
../include/ncbisami.h:183:14: warning: ‘PowersOfTwo’ defined but not used [-Wunused-variable]
  183 | static Uint4 PowersOfTwo[] = {01,02,04,010,020,040,0100,0200,0400,01000,
      |              ^~~~~~~~~~~
readdb.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: readdb.c,v 6.549 2016/09/02 15:04:59 ucko Exp $";
      |                   ^~~~~
readdb.c: In function ‘readdb_read_alias_file’:
readdb.c:3084:53: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3084 |                         sprintf(full_buffer, "%s%c%s", file_path,
      |                                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3090:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3090 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2994:57: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2994 |                             sprintf(full_buffer, "%s%c%s", file_path,
      |                                                         ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘Int4ListReadFromFile’:
readdb.c:2656:31: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2656 |     sprintf(file_name, "%s%s%s", blast_dir, DIRDELIMSTR, FileNameFind(fname));
      |                               ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘ReadDBOpenMHdrAndSeqFiles’:
readdb.c:2277:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2277 |       sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2296:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2296 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2252:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2252 |      sprintf(buffer, "%s.%csq", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:2259:27: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 2259 |       sprintf(buffer, "%s.%chr", rdfp->full_filename, is_prot? 'p':'n');
      |                           ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_get_taxonomy_names’:
readdb.c:5679:28: warning: ‘ufp_last’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5679 |             ufp_last->next = ufp;
      |             ~~~~~~~~~~~~~~~^~~~~
In file included from ../include/ncbi.h:59,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
readdb.c: In function ‘readdb_get_descriptor’:
../include/ncbimem.h:192:21: warning: ‘new_defline_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  192 | #define Nlm_MemCpy  memcpy
      |                     ^~~~~~
readdb.c:6622:26: note: ‘new_defline_length’ was declared here
 6622 |     Int4 defline_length, new_defline_length;
      |                          ^~~~~~~~~~~~~~~~~~
readdb.c: In function ‘readdb_new_internalEx’:
readdb.c:3600:33: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3600 |         sprintf(buffer1, "%s%s%s", buffer, DIRDELIMSTR, filename);
      |                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3635:45: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3635 |         sprintf(rdfp->full_filename, "%s%s%s", database_dir, DIRDELIMSTR, Nlm_FileNameFind(filename));
      |                                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3633:45: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 3633 |         sprintf(rdfp->full_filename, "%s%s%s", database_dir, DIRDELIMSTR, filename);
      |                                             ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3660:53: warning: ‘%s’ directive writing 11 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
 3660 |             sprintf(commonindex_full_filename, "%s%s%s", database_dir, DIRDELIMSTR, COMMONINDEX_FN);
      |                                                     ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 4108 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3671:25: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3671 |     sprintf(buffer, "%s.%cin", rdfp->full_filename, is_prot? 'p':'n');
      |                         ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3811:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3811 |     sprintf(buffer,  "%s.%cnd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3812:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3812 |     sprintf(buffer1, "%s.%cni", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3825:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3825 |     sprintf(buffer,  "%s.%csd", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3826:26: warning: ‘%c’ directive writing 1 byte into a region of size between 0 and 4095 [-Wformat-overflow=]
 3826 |     sprintf(buffer1, "%s.%csi", rdfp->full_filename, is_prot? 'p':'n');
      |                          ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3845:29: warning: ‘.ppd’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3845 |         sprintf(buffer,  "%s.ppd", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:3846:29: warning: ‘.ppi’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
 3846 |         sprintf(buffer1, "%s.ppi", rdfp->full_filename);
      |                             ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c: In function ‘GetAccList’:
readdb.c:11821:29: warning: ‘AccListLast’ may be used uninitialized in this function [-Wmaybe-uninitialized]
11821 |           AccListLast->next = AccListTmp;
      |           ~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~
readdb.c: In function ‘FD_ConstructMultivolumeDBList’:
readdb.c:12690:31: warning: ‘%03ld’ directive writing between 3 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                               ^~~~~
readdb.c:12690:29: note: directive argument in the range [0, 2147483646]
12690 |             sprintf(numstr, ".%03ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
readdb.c:12688:31: warning: ‘%02ld’ directive writing between 2 and 10 bytes into a region of size 9 [-Wformat-overflow=]
12688 |             sprintf(numstr, ".%02ld ", (long) i);
      |                               ^~~~~
readdb.c:12688:29: note: directive argument in the range [0, 2147483646]
12688 |             sprintf(numstr, ".%02ld ", (long) i);
      |                             ^~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from readdb.c:2057:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 13 bytes into a destination of size 10
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisam.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ncbisam.c:198:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisam.c: In function ‘ISAMMakeStringIndex’:
ncbisam.c:842:22: warning: unused variable ‘file_pos’ [-Wunused-variable]
  842 |                 Int4 file_pos = ftell(data->db_fd);
      |                      ^~~~~~~~
ncbisam.c: In function ‘ISAMInitSearch’:
ncbisam.c:1399:10: warning: variable ‘reserved2’ set but not used [-Wunused-but-set-variable]
 1399 |     Int4 reserved2;
      |          ^~~~~~~~~
At top level:
ncbisam.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisam.c,v 6.34 2007/11/06 19:20:06 coulouri Exp $";
      |                   ^~~~~
ncbisam.c: In function ‘ISAMMakeIndex’:
ncbisam.c:984:21: warning: ‘KeyDataInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  984 |     NISAMKeyDataPtr KeyDataInfo, KeyDataSamples;
      |                     ^~~~~~~~~~~
ncbisam.c:983:14: warning: ‘KeyInfo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  983 |     Uint4Ptr KeyInfo, KeySamples;
      |              ^~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘ISAMCreateDatabase’:
../include/ncbimem.h:232:23: warning: ‘prevterm’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1181:13: note: ‘prevterm’ was declared here
 1181 |     CharPtr prevterm;
      |             ^~~~~~~~
In file included from ../include/ncbimsg.h:78,
                 from ../include/ncbi.h:60,
                 from ncbisam.c:198:
../include/ncbierr.h:246:23: warning: ‘field_in’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  246 | #define ErrLogPrintf  Nlm_ErrLogPrintf
      |                       ^~~~~~~~~~~~~~~~
ncbisam.c:1177:37: note: ‘field_in’ was declared here
 1177 |     unsigned long uid_in, uid_last, field_in;
      |                                     ^~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
ncbisam.c: In function ‘NISAMSearch’:
../include/ncbimem.h:232:23: warning: ‘KeyDataPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1622:55: note: ‘KeyDataPageStart’ was declared here
 1622 |     NISAMKeyDataPtr KeyDataPage=NULL, KeyDataSamples, KeyDataPageStart;
      |                                                       ^~~~~~~~~~~~~~~~
In file included from ../include/ncbi.h:59,
                 from ncbisam.c:198:
../include/ncbimem.h:232:23: warning: ‘KeyPageStart’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
ncbisam.c:1619:34: note: ‘KeyPageStart’ was declared here
 1619 |     Int4 NumElements, *KeyPage, *KeyPageStart;
      |                                  ^~~~~~~~~~~~
ncbisam.c:1750:36: warning: ‘KeyPage’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1750 |             Key = SwapUint4(KeyPage[current]);
      |                                    ^
ncbisam.c:1593:24: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1593 |     *Start = SampleNum * data->PageSize;
      |              ~~~~~~~~~~^~~~~~~~~~~~~~~~
ncbisam.c:1618:27: note: ‘SampleNum’ was declared here
 1618 |     Int4 Start = 0, Stop, SampleNum;
      |                           ^~~~~~~~~
ncbisam.c: In function ‘SISAMSearch’:
ncbisam.c:2373:8: warning: ‘SampleNum’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2373 |     if ( (SampleNum < 0) || (SampleNum >= data->NumSamples)) {
      |        ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbisort.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from ../include/ncbisrti.h:60,
                 from ncbisort.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbisort.c: In function ‘SORTFracCompare’:
ncbisort.c:699:12: warning: type defaults to ‘int’ in declaration of ‘tmpa’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |            ^~~~
ncbisort.c:699:30: warning: type defaults to ‘int’ in declaration of ‘tmpb’ [-Wimplicit-int]
  699 |   register tmpa = UCHAR(*a), tmpb = UCHAR(*b);
      |                              ^~~~
In file included from ncbisort.c:86:
ncbisort.c: At top level:
../include/ncbisrti.h:213:13: warning: ‘inthandler’ declared ‘static’ but never defined [-Wunused-function]
  213 | static void inthandler(int i);
      |             ^~~~~~~~~~
ncbisort.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: ncbisort.c,v 6.9 2012/08/22 23:02:39 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/salign.h:10,
                 from salign.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salign.c: In function ‘BandAlignTwoSeqLocsFunc’:
salign.c:173:13: warning: variable ‘is_prot’ set but not used [-Wunused-but-set-variable]
  173 |   Boolean   is_prot;
      |             ^~~~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:391:15: warning: variable ‘totalvalmax’ set but not used [-Wunused-but-set-variable]
  391 |               totalvalmax = INT4_MAX,
      |               ^~~~~~~~~~~
salign.c: In function ‘link_solution’:
salign.c:1188:15: warning: unused variable ‘first’ [-Wunused-variable]
 1188 |   Boolean     first = TRUE;
      |               ^~~~~
At top level:
salign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salign.c,v 6.11 2009/01/21 17:09:18 bollin Exp $";
      |                   ^~~~~
salign.c: In function ‘SortBlastHits’:
salign.c:455:6: warning: ‘salpdup’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  455 |      SeqAlignSetFree (salpdup);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~
salign.c: In function ‘TranslateSeqLoc.constprop’:
salign.c:660:10: warning: ‘slpp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  660 |   return slpp;
      |          ^~~~
salign.c: In function ‘BlastTwoSeqLocs’:
salign.c:591:18: warning: ‘strand2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  591 |      sit->strand = strand2;
      |      ~~~~~~~~~~~~^~~~~~~~~
salign.c:589:18: warning: ‘strand1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  589 |      sit->strand = strand1;
      |      ~~~~~~~~~~~~^~~~~~~~~
salign.c: In function ‘BlastBandAlignTwoSeqLocs.isra.0’:
salign.c:1433:17: warning: ‘tail’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |      tail->next = salptmp;
      |      ~~~~~~~~~~~^~~~~~~~~
salign.c:1408:15: note: ‘tail’ was declared here
 1408 |               tail,
      |               ^~~~
salign.c:1348:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:30: note: ‘stop’ was declared here
 1301 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1348:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |          intronlg = (float)(abs(stop - start1) - alignlens)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1301:22: note: ‘start1’ was declared here
 1301 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c:1270:38: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:30: note: ‘stop’ was declared here
 1229 |   Int4        start, start1, stop;
      |                              ^~~~
salign.c:1270:38: warning: ‘start1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1270 |          intronlg = (float)(abs(stop - start1) - alignlen)/(float)(j-1);
      |                                 ~~~~~^~~~~~~~
salign.c:1229:22: note: ‘start1’ was declared here
 1229 |   Int4        start, start1, stop;
      |                      ^~~~~~
salign.c: In function ‘SeqLocListToSeqAlign’:
salign.c:1670:24: warning: ‘master_slp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1670 |            salpblast = BlastTwoSeqLocs (master_slp, slp, is_prot, msp);
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF salptool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from salptool.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
salptool.c: In function ‘MergeTwoDspBySIM4’:
salptool.c:285:10: warning: variable ‘has_overlap’ set but not used [-Wunused-but-set-variable]
  285 |  Boolean has_overlap;
      |          ^~~~~~~~~~~
salptool.c:281:7: warning: variable ‘gap’ set but not used [-Wunused-but-set-variable]
  281 |  Int4 gap=0,gap_1, gap_2;
      |       ^~~
salptool.c: In function ‘extend_dsp_ends’:
salptool.c:1329:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1329 |                     else
      |                     ^~~~
salptool.c:1331:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1331 |    if(extend_len > 0)
      |    ^~
salptool.c:1346:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1346 |                     else
      |                     ^~~~
salptool.c:1348:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1348 |    if(extend_len > 0)
      |    ^~
salptool.c:1363:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1363 |                     else
      |                     ^~~~
salptool.c:1365:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1365 |    if(extend_len > 0)
      |    ^~
salptool.c:1380:21: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1380 |                     else
      |                     ^~~~
salptool.c:1382:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1382 |    if(extend_len > 0)
      |    ^~
In file included from ../include/sqnutils.h:51,
                 from salptool.c:12:
salptool.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from salptool.c:14:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
salptool.c:1518:24: warning: ‘OrderBestHits’ defined but not used [-Wunused-function]
 1518 | static int LIBCALLBACK OrderBestHits(Pointer ptr1, Pointer ptr2)
      |                        ^~~~~~~~~~~~~
salptool.c:1468:13: warning: ‘showtextalign_fromalign’ defined but not used [-Wunused-function]
 1468 | static void showtextalign_fromalign (SeqAlignPtr salp, CharPtr path, FILE *fp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
salptool.c:1453:13: warning: ‘getlengthforid’ defined but not used [-Wunused-function]
 1453 | static Int4 getlengthforid (SeqIdPtr sip)
      |             ^~~~~~~~~~~~~~
salptool.c:1267:16: warning: ‘need_recompute’ defined but not used [-Wunused-function]
 1267 | static Boolean need_recompute(SeqAlignPtr align, Int4 m_len, Int4 s_len)
      |                ^~~~~~~~~~~~~~
salptool.c:838:13: warning: ‘SeqLocTrimPolyATail’ defined but not used [-Wunused-function]
  838 | static void SeqLocTrimPolyATail(SeqLocPtr loc_2, BioseqPtr bsp_2) {
      |             ^~~~~~~~~~~~~~~~~~~
salptool.c:46:13: warning: ‘SeqAnnotWrite’ defined but not used [-Wunused-function]
   46 | static void SeqAnnotWrite(SeqAlignPtr align)
      |             ^~~~~~~~~~~~~
salptool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: salptool.c,v 6.57 2008/07/07 18:52:31 bollin Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from urkutil.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkutil.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkpcc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkpcc.h:54,
                 from urkpcc.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkpcc.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkpcc.c,v 6.13 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkptpf.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objres.h:73,
                 from urkptpf.c:65:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkptpf.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkptpf.c,v 6.33 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkepi.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkepi.h:54,
                 from urkepi.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkepi.c: In function ‘PredictEpiI0’:
urkepi.c:214:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  214 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:239:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  239 |       episcore = DownArrayScore (episcore, epip->epiarray[*seq]);
      |                                                           ^~~~
urkepi.c:240:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  240 |       epip->epiarray[*seq] += 1;
      |                      ^~~~
urkepi.c:241:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  241 |       episcore = UpArrayScore (episcore, epip->epiarray[*seq]);
      |                                                         ^~~~
urkepi.c:263:59: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  263 |       episcore = DownArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                           ^~~~~~~~~~~~~
urkepi.c:264:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  264 |       epip->epiarray[*(seq-window)] -= 1;
      |                      ^~~~~~~~~~~~~
urkepi.c:265:57: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  265 |       episcore = UpArrayScore (episcore, epip->epiarray[*(seq-window)]);
      |                                                         ^~~~~~~~~~~~~
urkepi.c: In function ‘OptimizeEpiComp’:
urkepi.c:605:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  605 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:621:18: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  621 |           bin[seq[i]] += 1;
      |               ~~~^~~
urkepi.c:651:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  651 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c:657:19: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  657 |       if (fbin[seq[i]] > expect)
      |                ~~~^~~
urkepi.c: In function ‘OptimizeEpiHP’:
urkepi.c:782:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  782 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:797:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  797 |             epip->epiarray[seq[j]] += 1;
      |                            ~~~^~~
urkepi.c:837:29: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  837 |           epip->epiarray[seq[n]] -= 1;
      |                          ~~~^~~
urkepi.c: In function ‘OptimizeEpiProbFunc’:
urkepi.c:982:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  982 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
urkepi.c:994:31: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  994 |             epip->epiarray[seq[n]] += 1;
      |                            ~~~^~~
At top level:
urkepi.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkepi.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkepi.c: In function ‘FilterEpi’:
urkepi.c:1053:21: warning: ‘right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1053 |         cfap->right = right;
      |         ~~~~~~~~~~~~^~~~~~~
urkepi.c:936:56: note: ‘right’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                        ^~~~~
urkepi.c:1052:20: warning: ‘left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1052 |         cfap->left = left;
      |         ~~~~~~~~~~~^~~~~~
urkepi.c:936:50: note: ‘left’ was declared here
  936 |   Int4      i, n, j, k, start, stop, loop, fact, left, right;
      |                                                  ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkfltr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkfltr.h:51,
                 from urkfltr.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkfltr.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkfltr.c,v 6.8 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkdust.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkdust.h:51,
                 from urkdust.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkdust.c: In function ‘DustMe_h’:
urkdust.c:196:42: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
  196 |             (dcvp->curlevel <= newlevel) && dcvp->curend == loop+1)
      |             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~
urkdust.c: In function ‘DustForGraph’:
urkdust.c:776:17: warning: variable ‘drphead’ set but not used [-Wunused-but-set-variable]
  776 |   DustRegionPtr drphead;
      |                 ^~~~~~~
At top level:
urkdust.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkdust.c,v 6.10 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urksigu.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urksigu.h:57,
                 from urksigu.c:59:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urksigu.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urksigu.c,v 6.5 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seg.c
seg.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: seg.c,v 6.19 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
seg.c: In function ‘getprob’:
seg.c:935:15: warning: ‘ans2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  935 |    ans = ans1 + ans2 - totseq;
      |          ~~~~~^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkbias.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from urkbias.c:56:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkbias.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkbias.c,v 6.7 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urkcnsrt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urkcnsrt.h:60,
                 from urkcnsrt.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urkcnsrt.c:1203:13: warning: ‘ScanFrame’ defined but not used [-Wunused-function]
 1203 | static void ScanFrame (BioseqPtr bsp, SeqLocPtr slp, Int4 frame,
      |             ^~~~~~~~~
urkcnsrt.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urkcnsrt.c,v 6.21 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
urkcnsrt.c: In function ‘Scan3Frames’:
urkcnsrt.c:1385:5: warning: ‘length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1385 |     for (i = n; i < length; i++)
      |     ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF urktree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/urktree.h:51,
                 from urktree.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
urktree.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: urktree.c,v 6.6 2003/05/30 17:25:38 coulouri Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pseed3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pseed3.c:176:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pseed3.c: In function ‘SeedPruneHitsFromSeedReturn’:
pseed3.c:230:17: warning: variable ‘curSegs’ set but not used [-Wunused-but-set-variable]
  230 |     DenseSegPtr curSegs, testSegs; /*Used to extract ids from curSeqAlign, testSeqAlign*/
      |                 ^~~~~~~
pseed3.c: In function ‘seedEngineCore’:
pseed3.c:507:12: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  507 |     while (pattern = get_a_pat(patfp, &pname, occurArray, hitArray, &numPatOccur, &effectiveOccurrences, program_flag, unfilter_query, query, search->sbp->query_length, is_dna, patternSearch, seedSearch, showDiagnostics, &(search->error_return), info_vnp, hitArraySz)) {
      |            ^~~~~~~
pseed3.c: In function ‘output_hits’:
pseed3.c:1202:10: warning: variable ‘posBaseIndex’ set but not used [-Wunused-but-set-variable]
 1202 |     Int4 posBaseIndex; /*loop index for copying pos results arrays*/
      |          ^~~~~~~~~~~~
pseed3.c: In function ‘init_order’:
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                                      ^
pseed3.c:1483:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1483 |  seedSearch->order[seedSearch->pchars[i]] = i;
      |                    ~~~~~~~~~~~~~~~~~~^~~
pseed3.c:1487:33: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1487 |         seedSearch->charMultiple[i] = 0;
      |                                 ^
pseed3.c:1489:30: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1489 |  if (seedSearch->standardProb[i] > seedepsilon) {
      |                              ^
pseed3.c:1490:22: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1490 |    matrixRow = matrix[i];
      |                      ^
pseed3.c:1493:34: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1493 |      if (seedSearch->standardProb[j] > seedepsilon)
      |                                  ^
pseed3.c:1494:42: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                          ^
pseed3.c:1494:86: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1494 |        rowSum += seedSearch->standardProb[j]*exp(-(seedSearch->paramLambda)*matrixRow[j]);
      |                                                                                      ^
pseed3.c:1496:28: warning: array subscript has type ‘char’ [-Wchar-subscripts]
 1496 |    seedSearch->charMultiple[i] = rowSum;
      |                            ^
At top level:
pseed3.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pseed3.c,v 6.54 2008/10/31 18:51:07 madden Exp $";
      |                   ^~~~~
pseed3.c: In function ‘seedParallelFill’:
pseed3.c:712:68: warning: iteration 100 invokes undefined behavior [-Waggressive-loop-optimizations]
  712 |      returnData->seedSearch->name_space[i] = seedSearch->name_space[i];
      |                                              ~~~~~~~~~~~~~~~~~~~~~~^~~
pseed3.c:711:4: note: within this loop
  711 |    for( i = 0; i <= BUF_SIZE; i++)
      |    ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from pattern1.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:286:70: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  286 |      positionProbability = seedSearch->standardProb[seedSearch->order[c]];
      |                                                     ~~~~~~~~~~~~~~~~~^~~
pattern1.c:303:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  303 |      positionProbability += seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c:317:71: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  317 |      positionProbability -= seedSearch->standardProb[seedSearch->order[c]];
      |                                                      ~~~~~~~~~~~~~~~~~^~~
pattern1.c: In function ‘find_hitsS_DNA’:
pattern1.c:534:9: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  534 |     if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |         ^~~
pattern1.c:547:7: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  547 |   if (tmp = (prefixMatchedBitPattern & patternSearch->DNAwhichPrefixPosPtr[seq[i]])) {
      |       ^~~
pattern1.c: At top level:
pattern1.c:744:8: warning: return type defaults to ‘int’ [-Wimplicit-int]
  744 | static and(Int4 *result, Int4 *a, Int4 *b, patternSearchItems *patternSearch)
      |        ^~~
pattern1.c: In function ‘and’:
pattern1.c:750:11: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  750 |       if (result[i] = (a[i] & b[i]))
      |           ^~~~~~
pattern1.c: In function ‘align’:
pattern1.c:1102:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 1102 |    if (leftd >= 1)
      |       ^
pattern1.c: In function ‘pat_output’:
pattern1.c:1637:2: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
 1637 |  else
      |  ^~~~
pattern1.c:1639:11: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
 1639 |           ValNodeCopyStr(info_vnp, 0, buffer);
      |           ^~~~~~~~~~~~~~
At top level:
pattern1.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: pattern1.c,v 6.22 2006/08/04 21:11:17 papadopo Exp $";
      |                   ^~~~~
pattern1.c: In function ‘get_patL’:
pattern1.c:1348:10: warning: ‘j’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1348 |     *end = wordIndex*BITS_PACKED_PER_WORD+j;
      |     ~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
pattern1.c: In function ‘align.isra.0’:
pattern1.c:1158:8: warning: ‘CDrow’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1158 |  score = (CDrow-1)->CC;
      |  ~~~~~~^~~~~~~~~~~~~~~
pattern1.c: In function ‘get_patLL’:
pattern1.c:1393:5: warning: ‘pos’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1393 |     for (j = 0; j < pos; j+= wordIndex) {
      |     ^~~
pattern1.c: In function ‘init_pattern’:
pattern1.c:192:11: warning: ‘tj’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  192 |     Int4  tj; /*temporary copy of j*/
      |           ^~
pattern1.c: In function ‘align_of_pattern’:
pattern1.c:1562:19: warning: ‘data’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1562 |    local_score += ALIGN_B(querySeq-1, dbSeq-1, queryMatchOffset, dbMatchOffset,
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1563 |          BAND_LOW, BAND_HIGH, matrix, gap_open, gap_extend, alignScript, data);
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF impatool.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from impatool.c:73:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
impatool.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: impatool.c,v 6.16 2006/06/30 18:44:40 camacho Exp $";
      |                   ^~~~~
In file included from ../include/ncbi.h:59,
                 from impatool.c:73:
impatool.c: In function ‘IMPALAPrintHelp’:
../include/ncbimem.h:232:23: warning: ‘ret_buffer’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define MemFree       Nlm_MemFree
      |                       ^~~~~~~~~~~
impatool.c:288:10: note: ‘ret_buffer’ was declared here
  288 |  CharPtr ret_buffer;
      |          ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF posit2.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from posit2.c:78:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
posit2.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: posit2.c,v 6.12 2006/09/18 20:54:27 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mbalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/mbalign.h:4,
                 from mbalign.c:176:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mbalign.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mbalign.c,v 6.43 2006/02/02 17:57:34 papadopo Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF vecscrn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vecscrn.h:74,
                 from vecscrn.c:103:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
vecscrn.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: vecscrn.c,v 6.137 2005/12/27 14:46:44 madden Exp $";
      |                   ^~~~~
vecscrn.c: In function ‘VSPrintOverviewFromSeqLocs’:
vecscrn.c:1078:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1078 |   while (tmp)
      |         ^
vecscrn.c: In function ‘VSPrintListFromSeqLocs’:
vecscrn.c:1188:9: warning: ‘tmp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1188 |   while (tmp)
      |         ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF mblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from mblast.c:710:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mblast.c: In function ‘BioseqMegaBlastEngineCore’:
mblast.c:961:12: warning: statement with no effect [-Wunused-value]
  961 |  stop_timer("BioseqBlastEngineCore: before do_the_blast_run()");
      |            ^
mblast.c:987:12: warning: statement with no effect [-Wunused-value]
  987 |  stop_timer("MegaBlastEngineCore: after do_the_blast_run()");
      |            ^
mblast.c:942:14: warning: variable ‘seqalign’ set but not used [-Wunused-but-set-variable]
  942 |  SeqAlignPtr seqalign, PNTR seqalignp;
      |              ^~~~~~~~
mblast.c: In function ‘MegaBlastSetUpSearchInternalByLoc’:
mblast.c:1167:16: warning: variable ‘avglen’ set but not used [-Wunused-but-set-variable]
 1167 |    Nlm_FloatHi avglen;
      |                ^~~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1829:14: warning: variable ‘slp’ set but not used [-Wunused-but-set-variable]
 1829 |    SeqLocPtr slp;
      |              ^~~
mblast.c: In function ‘MegaBlastWordFinder_disc_1b’:
mblast.c:2372:32: warning: variable ‘mask’ set but not used [-Wunused-but-set-variable]
 2372 |    register Int4 s_off, ecode, mask, q_off, extra_code;
      |                                ^~~~
At top level:
mblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: mblast.c,v 6.215 2006/09/21 13:42:37 madden Exp $";
      |                   ^~~~~
mblast.c: In function ‘MegaBlastPackAlignmentsByQuery’:
mblast.c:1864:19: warning: ‘sap’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1864 |         sap->next = seqalign_var;
      |         ~~~~~~~~~~^~~~~~~~~~~~~~
mblast.c: In function ‘MegaBlastWordFinder_disc’:
mblast.c:2250:53: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2250 |                        (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                              ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2151:47: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2151 |          for (q_off = lookup->mb_lt->hashtable[ecode1]; q_off>0;
      |                                               ^
mblast.c: In function ‘MegaBlastWordFinder’:
mblast.c:2620:54: warning: ‘ecode2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2620 |                         (((PV_ARRAY_TYPE) 1)<<(ecode2&PV_ARRAY_MASK))) == 0))) {
      |                                               ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:17: note: ‘ecode2’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |                 ^~~~~~
mblast.c:2475:52: warning: ‘ecode1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2475 |                       (((PV_ARRAY_TYPE) 1)<<(ecode1&PV_ARRAY_MASK))) == 0)
      |                                             ~~~~~~~^~~~~~~~~~~~~~~
mblast.c:2373:9: note: ‘ecode1’ was declared here
 2373 |    Int4 ecode1, ecode2;
      |         ^~~~~~
mblast.c: In function ‘MegaBlastGapInfoToSeqAlign’:
mblast.c:3504:16: warning: ‘seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3504 |    SeqAlignPtr seqalign, seqalign_var, sap;
      |                ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF rpsutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rpsutil.c: In function ‘RPSBlastSearchLight’:
rpsutil.c:1838:10: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
 1838 |     Int2 status;
      |          ^~~~~~
rpsutil.c: In function ‘SaveUntilChar’:
rpsutil.c:2190:13: warning: comparison between pointer and zero character constant [-Wpointer-compare]
 2190 |     if (ptr != NULLB)
      |             ^~
rpsutil.c:2190:9: note: did you mean to dereference the pointer?
 2190 |     if (ptr != NULLB)
      |         ^
rpsutil.c: In function ‘RPSBgetCddHits’:
rpsutil.c:2210:21: warning: variable ‘found_score’ set but not used [-Wunused-but-set-variable]
 2210 |   Boolean           found_score = FALSE;
      |                     ^~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from rpsutil.c:282:
rpsutil.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘getAuxInformation’:
rpsutil.c:398:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  398 |     fscanf(matrixAuxiliaryFile,"%s",underlyingMatrixName);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:404:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  404 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_open);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:405:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  405 |     fscanf(matrixAuxiliaryFile,"%d\n", gap_extend);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:406:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  406 |     fscanf(matrixAuxiliaryFile, "%le", &Kungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:407:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  407 |     fscanf(matrixAuxiliaryFile, "%le", &Hungapped);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:408:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  408 |     fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:409:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  409 |     fscanf(matrixAuxiliaryFile, "%d", &dbLength);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:410:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  410 |     fscanf(matrixAuxiliaryFile, "%lf", &privateScalingFactor);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:415:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  415 |      fscanf(matrixAuxiliaryFile, "%d", &maxLength);
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:416:6: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  416 |      fscanf(matrixAuxiliaryFile, "%le", &(rpsinfo->karlinK[index]));
      |      ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
At top level:
rpsutil.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: rpsutil.c,v 6.76 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
rpsutil.c: In function ‘RPSInitEx’:
rpsutil.c:451:28: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  451 |     sprintf(rps_matrix, "%s.rps", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:452:28: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  452 |     sprintf(rps_lookup, "%s.loo", rpsinfo->rdfp->full_filename);
      |                            ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c:453:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  453 |     sprintf(rps_aux, "%s.aux", rpsinfo->rdfp->full_filename);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSAlignTraceBack’:
rpsutil.c:1444:32: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1444 |         search->sbp->posMatrix = posMatrix;
      |         ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
rpsutil.c:1433:24: warning: ‘rev_subject_length’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1433 |             seqalign = BlastGetGapAlgnTbck (search, 0, TRUE, FALSE,
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
 1434 |                                             subject, subject_length,
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~
 1435 |                                             rev_subject, rev_subject_length);
      |                                             ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rpsutil.c: In function ‘RPSCalcEValue’:
rpsutil.c:1269:30: warning: ‘posMatrix’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1269 |       search->sbp->posMatrix = posMatrix;
      |       ~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from ../include/rpsutil.h:128,
                 from rpsutil.c:281:
rpsutil.c: In function ‘RPSBgetCddHits’:
../include/ncbistr.h:284:20: warning: ‘dbname’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 | #define Nlm_StrCmp strcmp
      |                    ^~~~~~
rpsutil.c:2212:21: note: ‘dbname’ was declared here
 2212 |   CharPtr           dbname;
      |                     ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF kappa.c
kappa.c: In function ‘Kappa_SequenceGetProteinRange’:
kappa.c:1399:7: warning: unused variable ‘i’ [-Wunused-variable]
 1399 |   int i;
      |       ^
At top level:
kappa.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: kappa.c,v 6.94 2013/11/04 15:42:10 boratyng Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF xmlblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/xmlblast.h:89,
                 from xmlblast.c:171:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
xmlblast.c: In function ‘PSIXmlInit’:
xmlblast.c:1239:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
 1239 |     Boolean retval = FALSE;
      |             ^~~~~~
At top level:
xmlblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: xmlblast.c,v 6.41 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
xmlblast.c: In function ‘BXMLGetSeqLineForStdSeg’:
xmlblast.c:373:28: warning: ‘genetic_code2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  373 |     CharPtr genetic_code1, genetic_code2;
      |                            ^~~~~~~~~~~~~
xmlblast.c: In function ‘BXMLSeqAlignToHits’:
xmlblast.c:867:36: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  867 |                     if((hspp->next = BXMLGetHspFromSeqAlign(sap2, is_aa, chain,
      |                        ~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  868 |                                         is_ooframe, mask_loc)) == NULL)
      |                                         ~~~~~~~~~~~~~~~~~~~~~~
xmlblast.c: In function ‘SeqAlignToHits’:
xmlblast.c:1646:24: warning: ‘hspp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1646 |             hspp->next = GetHspFromSeqAlign(sap2, ungapped, &hsp_count);
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF bxmlobj.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from bxmlobj.c:3:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
bxmlobj.c: In function ‘BlastOutputAsnRead’:
bxmlobj.c:96:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   96 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘ParametersAsnRead’:
bxmlobj.c:361:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  361 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:360:12: warning: unused variable ‘isError’ [-Wunused-variable]
  360 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘IterationAsnRead’:
bxmlobj.c:613:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  613 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘StatisticsAsnRead’:
bxmlobj.c:829:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  829 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:828:12: warning: unused variable ‘isError’ [-Wunused-variable]
  828 |    Boolean isError = FALSE;
      |            ^~~~~~~
bxmlobj.c: In function ‘HitAsnRead’:
bxmlobj.c:1039:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1039 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c: In function ‘HspAsnRead’:
bxmlobj.c:1244:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1244 |    AsnReadFunc func;
      |                ^~~~
bxmlobj.c:1243:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1243 |    Boolean isError = FALSE;
      |            ^~~~~~~
At top level:
bxmlobj.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: bxmlobj.c,v 6.11 2006/09/18 15:20:39 bealer Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dotseq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from ../include/tofasta.h:47,
                 from ../include/dotseq.h:63,
                 from dotseq.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dotseq.c:96:36: warning: missing braces around initializer [-Wmissing-braces]
   96 | static Int4  DOTblosum62[24][24] = {
      |                                    ^
   97 |   4, -1, -2, -2,  0, -1, -1,  0, -2, -1, -1, -1, -1, -2, -1,  1,  0, -3, -2,  0, -2, -1,  0, -4,
      |   {                                                                                            }
   98 |  -1,  5,  0, -2, -3,  1,  0, -2,  0, -3, -2,  2, -1, -3, -2, -1, -1, -3, -2, -3, -1,  0, -1, -4,
      |  {                                                                                             }
   99 |  -2,  0,  6,  1, -3,  0,  0,  0,  1, -3, -3,  0, -2, -3, -2,  1,  0, -4, -2, -3,  3,  0, -1, -4,
      |  {                                                                                             }
  100 |  -2, -2,  1,  6, -3,  0,  2, -1, -1, -3, -4, -1, -3, -3, -1,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  101 |   0, -3, -3, -3,  9, -3, -4, -3, -3, -1, -1, -3, -1, -2, -3, -1, -1, -2, -2, -1, -3, -3, -2, -4,
      |   {                                                                                            }
  102 |  -1,  1,  0,  0, -3,  5,  2, -2,  0, -3, -2,  1,  0, -3, -1,  0, -1, -2, -1, -2,  0,  3, -1, -4,
      |  {                                                                                             }
  103 |  -1,  0,  0,  2, -4,  2,  5, -2,  0, -3, -3,  1, -2, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  104 |   0, -2,  0, -1, -3, -2, -2,  6, -2, -4, -4, -2, -3, -3, -2,  0, -2, -2, -3, -3, -1, -2, -1, -4,
      |   {                                                                                            }
  105 |  -2,  0,  1, -1, -3,  0,  0, -2,  8, -3, -3, -1, -2, -1, -2, -1, -2, -2,  2, -3,  0,  0, -1, -4,
      |  {                                                                                             }
  106 |  -1, -3, -3, -3, -1, -3, -3, -4, -3,  4,  2, -3,  1,  0, -3, -2, -1, -3, -1,  3, -3, -3, -1, -4,
      |  {                                                                                             }
  107 |  -1, -2, -3, -4, -1, -2, -3, -4, -3,  2,  4, -2,  2,  0, -3, -2, -1, -2, -1,  1, -4, -3, -1, -4,
      |  {                                                                                             }
  108 |  -1,  2,  0, -1, -3,  1,  1, -2, -1, -3, -2,  5, -1, -3, -1,  0, -1, -3, -2, -2,  0,  1, -1, -4,
      |  {                                                                                             }
  109 |  -1, -1, -2, -3, -1,  0, -2, -3, -2,  1,  2, -1,  5,  0, -2, -1, -1, -1, -1,  1, -3, -1, -1, -4,
      |  {                                                                                             }
  110 |  -2, -3, -3, -3, -2, -3, -3, -3, -1,  0,  0, -3,  0,  6, -4, -2, -2,  1,  3, -1, -3, -3, -1, -4,
      |  {                                                                                             }
  111 |  -1, -2, -2, -1, -3, -1, -1, -2, -2, -3, -3, -1, -2, -4,  7, -1, -1, -4, -3, -2, -2, -1, -2, -4,
      |  {                                                                                             }
  112 |   1, -1,  1,  0, -1,  0,  0,  0, -1, -2, -2,  0, -1, -2, -1,  4,  1, -3, -2, -2,  0,  0,  0, -4,
      |   {                                                                                            }
  113 |   0, -1,  0, -1, -1, -1, -1, -2, -2, -1, -1, -1, -1, -2, -1,  1,  5, -2, -2,  0, -1, -1,  0, -4,
      |   {                                                                                            }
  114 |  -3, -3, -4, -4, -2, -2, -3, -2, -2, -3, -2, -3, -1,  1, -4, -3, -2, 11,  2, -3, -4, -3, -2, -4,
      |  {                                                                                             }
  115 |  -2, -2, -2, -3, -2, -1, -2, -3,  2, -1, -1, -2, -1,  3, -3, -2, -2,  2,  7, -1, -3, -2, -1, -4,
      |  {                                                                                             }
  116 |   0, -3, -3, -3, -1, -2, -2, -3, -3,  3,  1, -2,  1, -1, -2, -2,  0, -3, -1,  4, -3, -2, -1, -4,
      |   {                                                                                            }
  117 |  -2, -1,  3,  4, -3,  0,  1, -1,  0, -3, -4,  0, -3, -3, -2,  0, -1, -4, -3, -3,  4,  1, -1, -4,
      |  {                                                                                             }
  118 |  -1,  0,  0,  1, -3,  3,  4, -2,  0, -3, -3,  1, -1, -3, -1,  0, -1, -3, -2, -2,  1,  4, -1, -4,
      |  {                                                                                             }
  119 |   0, -1, -1, -1, -2, -1, -1, -1, -1, -1, -1, -1, -1, -1, -2,  0,  0, -2, -1, -1, -1, -1, -1, -4,
      |   {                                                                                            }
  120 |  -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4, -4,  1
      |  {
  121 |  };
      |  }
dotseq.c: In function ‘DOT_BuildPLookup’:
dotseq.c:887:31: warning: variable ‘found_ambig’ set but not used [-Wunused-but-set-variable]
  887 |   Boolean         EXACTMATCH, found_ambig, saved_index = FALSE;
      |                               ^~~~~~~~~~~
dotseq.c:885:19: warning: unused variable ‘threshold’ [-Wunused-variable]
  885 |   Int4            threshold=13; /* one-hit heuristics T must be at least 13*/
      |                   ^~~~~~~~~
dotseq.c:883:19: warning: unused variable ‘index’ [-Wunused-variable]
  883 |   Int4            index = 0;
      |                   ^~~~~
dotseq.c: In function ‘DOT_ComputeHits’:
dotseq.c:1043:47: warning: variable ‘q_end’ set but not used [-Wunused-but-set-variable]
 1043 |   Uint1Ptr                s, subject0, s_end, q_end;
      |                                               ^~~~~
dotseq.c:1041:19: warning: unused variable ‘saved_index’ [-Wunused-variable]
 1041 |   Boolean         saved_index = FALSE;
      |                   ^~~~~~~~~~~
dotseq.c:1039:19: warning: unused variable ‘threshold’ [-Wunused-variable]
 1039 |   Int4            threshold=13;
      |                   ^~~~~~~~~
dotseq.c: In function ‘DOT_SPI_FindBestAlnByDotPlot’:
dotseq.c:2016:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 2016 |    Uint1           strand;
      |                    ^~~~~~
dotseq.c:2015:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 2015 |    Int4            start2;
      |                    ^~~~~~
dotseq.c:2014:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 2014 |    Int4            start1;
      |                    ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from dotseq.c:87:
dotseq.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
dotseq.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: dotseq.c,v 6.14 2006/07/13 17:16:20 bollin Exp $";
      |                   ^~~~~
dotseq.c: In function ‘DOT_BuildHitList’:
dotseq.c:1286:9: warning: ‘index’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1286 |   while (i<index)
      |         ^
dotseq.c:1310:19: note: ‘index’ was declared here
 1310 |   Int4            index;
      |                   ^~~~~
dotseq.c:1309:19: warning: ‘hitlist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1309 |   DOTDiagPtr PNTR hitlist;
      |                   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF spidey.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/spidey.h:102,
                 from spidey.c:263:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
spidey.c: In function ‘SPI_PrintResult’:
spidey.c:1740:21: warning: variable ‘offset’ set but not used [-Wunused-but-set-variable]
 1740 |    Int4             offset;
      |                     ^~~~~~
spidey.c: In function ‘SPI_AlnSinglemRNAToPieces’:
spidey.c:2854:19: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
 2854 |    if (spot->from == spot->to == 0)
      |        ~~~~~~~~~~~^~~~~~~~~~~
spidey.c: In function ‘SPI_FillInLastmRNAHoles’:
spidey.c:6299:21: warning: variable ‘internal’ set but not used [-Wunused-but-set-variable]
 6299 |    Boolean          internal;
      |                     ^~~~~~~~
spidey.c: In function ‘SPI_FindBestAlnByDotPlot’:
spidey.c:6445:20: warning: variable ‘strand’ set but not used [-Wunused-but-set-variable]
 6445 |    Uint1           strand;
      |                    ^~~~~~
spidey.c:6444:20: warning: variable ‘start2’ set but not used [-Wunused-but-set-variable]
 6444 |    Int4            start2;
      |                    ^~~~~~
spidey.c:6443:20: warning: variable ‘start1’ set but not used [-Wunused-but-set-variable]
 6443 |    Int4            start1;
      |                    ^~~~~~
spidey.c: In function ‘SPI_ConnectAlnPieces’:
spidey.c:7814:30: warning: variable ‘tmparray’ set but not used [-Wunused-but-set-variable]
 7814 |    SPI_FragPtr          PNTR tmparray;
      |                              ^~~~~~~~
spidey.c:7800:25: warning: variable ‘sfpprev’ set but not used [-Wunused-but-set-variable]
 7800 |    SPI_FragPtr          sfpprev;
      |                         ^~~~~~~
spidey.c: In function ‘SPI_AdjustSplicesInPieces’:
spidey.c:8448:23: warning: variable ‘minus’ set but not used [-Wunused-but-set-variable]
 8448 |    Boolean            minus;
      |                       ^~~~~
spidey.c: In function ‘SPI_CheckMrnaOrder’:
spidey.c:10296:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10296 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10300:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10300 |                     || (ival->strand == Seq_strand_minus == ival2->strand
spidey.c:10313:35: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10313 |                 if ((ival->strand == Seq_strand_plus == ival2->strand
spidey.c:10315:38: warning: suggest parentheses around comparison in operand of ‘==’ [-Wparentheses]
10315 |                     || (ival->strand == Seq_strand_plus == ival2->strand
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spidey.c:263:
spidey.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
spidey.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: spidey.c,v 6.74 2016/09/02 14:57:38 ucko Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF motif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/motif.h:45,
                 from motif.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
motif.c: In function ‘MOT_FindPolyA’:
motif.c:86:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
   86 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
motif.c: In function ‘MOT_FindKozak’:
motif.c:216:18: warning: variable ‘buf’ set but not used [-Wunused-but-set-variable]
  216 |    Uint1         buf[MOT_WINSIZE];
      |                  ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from ../include/motif.h:48,
                 from motif.c:47:
motif.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
motif.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: motif.c,v 6.7 2007/05/07 13:30:54 kans Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blfmtutl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from blfmtutl.c:175:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blfmtutl.c: In function ‘CBStatisticsGetReference’:
blfmtutl.c:593:4: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
  593 |  } else
      |    ^~~~
blfmtutl.c:595:4: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
  595 |    add_string_to_bufferEx("Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,", &ret_buffer, &ret_buffer_length, TRUE);
      |    ^~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1281:16: warning: this ‘for’ clause does not guard... [-Wmisleading-indentation]
 1281 |                for (index=1; ssp->next; index++)
      |                ^~~
blfmtutl.c:1283:20: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘for’
 1283 |                    num_gap_opens = index / 2;
      |                    ^~~~~~~~~~~~~
At top level:
blfmtutl.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: blfmtutl.c,v 1.44 2012/10/10 14:05:50 fongah2 Exp $";
      |                   ^~~~~
blfmtutl.c: In function ‘BlastPrintTabularResults’:
blfmtutl.c:1117:13: warning: ‘alignments_count’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1117 |          if (--alignments_count < 0)
      |             ^
blfmtutl.c:1353:19: warning: ‘s_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1353 |             s_end += s_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1352:21: warning: ‘s_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1352 |             s_start += s_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1351:19: warning: ‘q_end’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1351 |             q_end += q_shift;
      |             ~~~~~~^~~~~~~~~~
blfmtutl.c:1350:21: warning: ‘q_start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1350 |             q_start += q_shift;
      |             ~~~~~~~~^~~~~~~~~~
blfmtutl.c:1081:24: warning: ‘query_id’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1081 |          while (slp && SeqIdComp(query_id, SeqLocId(slp)) != SIC_YES)
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blfmtutl.c: In function ‘BlastSetUserErrorString’:
blfmtutl.c:1413:26: warning: ‘title’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1413 |  CharPtr buf_start, ptr, title;
      |                          ^~~~~
rm -f libncbitool.a
ar cru libncbitool.a csim.o db_slist.o dust.o blast_dust.o falign.o g_any.o sim2.o sim3.o sim4.o simutil.o slist.o sec.o tfuns.o toasn3.o toporg.o pobutil.o stsutil.o suggadj.o suggest.o suggslp.o blast.o blastutl.o blastool.o blastconcat.o splutil.o gapxdrop.o bandalg0.o bandalg1.o bandalg2.o bandalg3.o bandalg4.o bandalg5.o bandalgn.o blastkar.o actutils.o posit.o lookup.o readdb.o ncbisam.o ncbisort.o salign.o salptool.o urkutil.o urkpcc.o urkptpf.o urkepi.o urkfltr.o urkdust.o urksigu.o seg.o urkbias.o urkcnsrt.o urktree.o pseed3.o pattern1.o impatool.o posit2.o mbalign.o vecscrn.o mblast.o rpsutil.o kappa.o xmlblast.o bxmlobj.o dotseq.o spidey.o motif.o blfmtutl.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitool.a ../lib
ranlib ../lib/libncbitool.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_frequency_data.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_mode_condition.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF composition_adjustment.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF nlm_linear_algebra.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF optimize_target_freq.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF compo_heap.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF smith_waterman.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF redo_alignment.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF unified_pvalues.c
rm -f libblastcompadj.a
ar cru libblastcompadj.a matrix_frequency_data.o compo_mode_condition.o composition_adjustment.o nlm_linear_algebra.o optimize_target_freq.o compo_heap.o smith_waterman.o redo_alignment.o unified_pvalues.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastcompadj.a ../lib
ranlib ../lib/libblastcompadj.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontg.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontmb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontmb.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontt.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pictogif.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from pictogif.c:50:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfontl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfontl.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gdfonts.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/gifgen.h:115,
                 from gdfonts.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -DWIN_GIF -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbidrwg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ncbidrwg.c:43:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ncbidrwg.c: In function ‘Nlm_ClearRgn’:
ncbidrwg.c:6081:16: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6081 |   Nlm_RgnTool  ntool;
      |                ^~~~~
ncbidrwg.c: In function ‘Nlm_DiffRgn’:
ncbidrwg.c:6273:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6273 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6272:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6272 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6271:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6271 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_XorRgn’:
ncbidrwg.c:6324:16: warning: variable ‘ntool3’ set but not used [-Wunused-but-set-variable]
 6324 |   Nlm_RgnTool  ntool3;
      |                ^~~~~~
ncbidrwg.c:6323:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6323 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6322:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6322 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EqualRgn’:
ncbidrwg.c:6353:16: warning: variable ‘ntool2’ set but not used [-Wunused-but-set-variable]
 6353 |   Nlm_RgnTool  ntool2;
      |                ^~~~~~
ncbidrwg.c:6352:16: warning: variable ‘ntool1’ set but not used [-Wunused-but-set-variable]
 6352 |   Nlm_RgnTool  ntool1;
      |                ^~~~~~
ncbidrwg.c: In function ‘Nlm_EmptyRgn’:
ncbidrwg.c:6381:17: warning: variable ‘ntool’ set but not used [-Wunused-but-set-variable]
 6381 |   Nlm_RgnTool   ntool;
      |                 ^~~~~
ncbidrwg.c: In function ‘Nlm_CopyPixmap’:
ncbidrwg.c:7040:25: warning: variable ‘height’ set but not used [-Wunused-but-set-variable]
 7040 |   Nlm_Int2              height;
      |                         ^~~~~~
ncbidrwg.c:7039:25: warning: variable ‘width’ set but not used [-Wunused-but-set-variable]
 7039 |   Nlm_Int2              width;
      |                         ^~~~~
ncbidrwg.c: In function ‘Nlm_GetColorRGB’:
ncbidrwg.c:1373:10: warning: ‘i’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1373 |   return (Nlm_Uint4)i;
      |          ^~~~~~~~~~~~
rm -f libvibgif.a
ar cru libvibgif.a gdfontg.o gdfontmb.o gdfontt.o pictogif.o gdfontl.o gdfonts.o ncbidrwg.o drawing.o mapping.o picture.o ncbimain.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibgif.a ../lib
ranlib ../lib/libvibgif.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF algorend.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/viewer3d.h:125,
                 from algorend.c:584:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘RenderObject’:
algorend.c:3135:25: warning: variable ‘fZTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                         ^~~~
algorend.c:3135:19: warning: variable ‘fYTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |                   ^~~~
algorend.c:3135:13: warning: variable ‘fXTo’ set but not used [-Wunused-but-set-variable]
 3135 |     FloatLo fXTo, fYTo, fZTo;
      |             ^~~~
algorend.c:3134:29: warning: variable ‘fZFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                             ^~~~~~
algorend.c:3134:21: warning: variable ‘fYFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |                     ^~~~~~
algorend.c:3134:13: warning: variable ‘fXFrom’ set but not used [-Wunused-but-set-variable]
 3134 |     FloatLo fXFrom, fYFrom, fZFrom;
      |             ^~~~~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c:3757:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3757 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
algorend.c: In function ‘Do3DOrigin’:
algorend.c:5756:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 5756 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:5751:13: warning: variable ‘fTo’ set but not used [-Wunused-but-set-variable]
 5751 |     FloatLo fTo[3];
      |             ^~~
algorend.c:5750:13: warning: variable ‘fFrom’ set but not used [-Wunused-but-set-variable]
 5750 |     FloatLo fFrom[3];
      |             ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderLabel’:
../include/pictur3d.h:235:27: warning: ‘iX’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:10: note: ‘iX’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |          ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iY’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:14: note: ‘iY’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |              ^~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:235:27: warning: ‘iZ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  235 | #define AddText3D         Nlm_AddText3D
      |                           ^~~~~~~~~~~~~
algorend.c:3389:18: note: ‘iZ’ was declared here
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3449:22: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c:3442:22: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3442 |         fXt = (fXCen - fXFrom) + (fXCen - fXTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc.isra.0’:
algorend.c:1316:33: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1316 |             pars->SolventRender = k;
      |             ~~~~~~~~~~~~~~~~~~~~^~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘RenderObject’:
../include/pictur3d.h:234:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:10: note: ‘iXFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:18: note: ‘iYFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3136:26: note: ‘iZFrom’ was declared here
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:10: note: ‘iXTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:16: note: ‘iYTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:234:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  234 | #define AddCylinder3D     Nlm_AddCylinder3D
      |                           ^~~~~~~~~~~~~~~~~
algorend.c:3137:22: note: ‘iZTo’ was declared here
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
algorend.c: In function ‘Do3DOrigin’:
../include/pictur3d.h:232:27: warning: ‘iXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:10: note: ‘iXFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:18: note: ‘iYFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5752:26: note: ‘iZFrom’ was declared here
 5752 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:10: note: ‘iXTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:16: note: ‘iYTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
In file included from ../include/viewer3d.h:129,
                 from algorend.c:584:
../include/pictur3d.h:232:27: warning: ‘iZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  232 | #define AddLine3D         Nlm_AddLine3D
      |                           ^~~~~~~~~~~~~
algorend.c:5753:22: note: ‘iZTo’ was declared here
 5753 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dsave.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet.isra.0’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dxprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Viewer3DViewer’:
cn3dwin.c:1784:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1784 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3D_Menus’:
cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2131 |           (Nlm_VoidPtr) i, NULL);
      |           ^
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmatn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmodl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dshim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dmesh.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF cn3dstyl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqcons.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
rm -f libncbicn3d.a
ar cru libncbicn3d.a algorend.o cn3dmsel.o cn3dopen.o cn3dsave.o cn3dxprt.o cn3dwin.o cn3dentr.o cn3dmsg.o cn3dmatn.o cn3dmodl.o cn3dshim.o cn3dmesh.o cn3dstyl.o seqcons.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3d.a ../lib
ranlib ../lib/libncbicn3d.a
mv algorend.o algorend.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL algorend.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/shim3d.h:153,
                 from algorend.c:582:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
algorend.c: In function ‘Cn3D_SetOGLFont’:
algorend.c:791:24: warning: unused variable ‘currentUnderlined’ [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:790:45: warning: unused variable ‘currentItalic’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:790:24: warning: unused variable ‘currentBold’ [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:789:40: warning: unused variable ‘currentSize’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:789:21: warning: unused variable ‘currentIndex’ [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c: In function ‘ColorFromSS’:
algorend.c:893:10: warning: unused variable ‘rsult’ [-Wunused-variable]
  893 |     Int2 rsult = 0;
      |          ^~~~~
algorend.c: In function ‘Cn3D_RenWire’:
algorend.c:1400:10: warning: unused variable ‘pmldThis’ [-Wunused-variable]
 1400 |     PMLD pmldThis = NULL;
      |          ^~~~~~~~
algorend.c:1399:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1399 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
algorend.c:1398:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1398 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘Cn3D_ColSeqCons’:
algorend.c:1795:24: warning: cast from pointer to integer of different size [-Wpointer-to-int-cast]
 1795 |     pars->ConsColAlg = (Nlm_Int2) GetObjectExtra(i);
      |                        ^
algorend.c: In function ‘MasterChangeLabelsProc’:
algorend.c:2075:44: warning: unused variable ‘TopOn’ [-Wunused-variable]
 2075 |     Boolean NumOn, NameOn, PDBOn, WhiteOn, TopOn;
      |                                            ^~~~~
algorend.c:2073:13: warning: unused variable ‘k’ [-Wunused-variable]
 2073 |     Int2 i, k, nameval;
      |             ^
algorend.c: In function ‘ResetLabelCtrls’:
algorend.c:2272:25: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 2272 |     Int2 i, val, style, size, termStyle;
      |                         ^~~~
algorend.c: In function ‘LabelControls’:
algorend.c:2434:19: warning: variable ‘ppt11’ set but not used [-Wunused-but-set-variable]
 2434 |     PrompT ppt10, ppt11;
      |                   ^~~~~
algorend.c:2431:36: warning: unused variable ‘ppt7’ [-Wunused-variable]
 2431 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt7, ppt8, ppt9;
      |                                    ^~~~
algorend.c: In function ‘Cn3D_SetQualityFromAppParams’:
algorend.c:2649:9: warning: unused variable ‘i’ [-Wunused-variable]
 2649 |     int i;
      |         ^
algorend.c: In function ‘OGL_Quality’:
algorend.c:2769:23: warning: unused variable ‘q’ [-Wunused-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                       ^
algorend.c:2769:20: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                    ^
algorend.c:2769:16: warning: variable ‘bp’ set but not used [-Wunused-but-set-variable]
 2769 |     Nlm_PrompT bp, p, q;
      |                ^~
algorend.c: In function ‘RenderControls’:
algorend.c:2893:12: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 2893 |     PrompT ppt5;
      |            ^~~~
algorend.c: In function ‘RenderObject’:
algorend.c:3138:10: warning: unused variable ‘iCylRadius’ [-Wunused-variable]
 3138 |     Int4 iCylRadius;
      |          ^~~~~~~~~~
algorend.c:3137:22: warning: unused variable ‘iZTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                      ^~~~
algorend.c:3137:16: warning: unused variable ‘iYTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |                ^~~~
algorend.c:3137:10: warning: unused variable ‘iXTo’ [-Wunused-variable]
 3137 |     Int4 iXTo, iYTo, iZTo;
      |          ^~~~
algorend.c:3136:26: warning: unused variable ‘iZFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                          ^~~~~~
algorend.c:3136:18: warning: unused variable ‘iYFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |                  ^~~~~~
algorend.c:3136:10: warning: unused variable ‘iXFrom’ [-Wunused-variable]
 3136 |     Int4 iXFrom, iYFrom, iZFrom;
      |          ^~~~~~
algorend.c:3133:10: warning: unused variable ‘i’ [-Wunused-variable]
 3133 |     Int4 i = 0;
      |          ^
algorend.c: In function ‘RenderLabel’:
algorend.c:3394:10: warning: variable ‘paldPrim’ set but not used [-Wunused-but-set-variable]
 3394 |     PALD paldPrim = NULL;
      |          ^~~~~~~~
algorend.c:3393:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
 3393 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
algorend.c:3389:18: warning: unused variable ‘iZ’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |                  ^~
algorend.c:3389:14: warning: unused variable ‘iY’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |              ^~
algorend.c:3389:10: warning: unused variable ‘iX’ [-Wunused-variable]
 3389 |     Int4 iX, iY, iZ;
      |          ^~
algorend.c: In function ‘RenderBond’:
algorend.c:3554:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3554 |     PMSD pmsdParent = NULL;
      |          ^~~~~~~~~~
algorend.c: In function ‘RenderHalfWormBond’:
algorend.c:3673:10: warning: variable ‘pmsdParent’ set but not used [-Wunused-but-set-variable]
 3673 |     PMSD pmsdParent;
      |          ^~~~~~~~~~
algorend.c:3671:24: warning: variable ‘pmad2’ set but not used [-Wunused-but-set-variable]
 3671 |     PMAD pmad0, pmad1, pmad2, pmad3;
      |                        ^~~~~
algorend.c: In function ‘RenderAnAtom’:
algorend.c:3758:10: warning: unused variable ‘pmadFrom’ [-Wunused-variable]
 3758 |     PMAD pmadFrom = NULL;
      |          ^~~~~~~~
algorend.c: In function ‘RenderAllAtom’:
algorend.c:3829:9: warning: variable ‘iMenu’ set but not used [-Wunused-but-set-variable]
 3829 |     int iMenu;
      |         ^~~~~
algorend.c:3815:11: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 3815 |     PVNMB pvnmbThis = NULL;
      |           ^~~~~~~~~
algorend.c:3811:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
 3811 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘RenderGraph’:
algorend.c:4498:10: warning: unused variable ‘bReservedThis’ [-Wunused-variable]
 4498 |     Byte bReservedThis = 0;
      |          ^~~~~~~~~~~~~
algorend.c: In function ‘LabelChainTermini’:
algorend.c:4772:14: warning: unused variable ‘pmbdThis’ [-Wunused-variable]
 4772 |         PMBD pmbdThis = NULL;
      |              ^~~~~~~~
algorend.c:4771:15: warning: unused variable ‘pvnmbThis’ [-Wunused-variable]
 4771 |         PVNMB pvnmbThis = NULL;
      |               ^~~~~~~~~
algorend.c: In function ‘RenderMolecule’:
algorend.c:4871:11: warning: variable ‘pdnmmThis’ set but not used [-Wunused-but-set-variable]
 4871 |     PDNMM pdnmmThis = NULL;
      |           ^~~~~~~~~
algorend.c: In function ‘fnARLoop’:
algorend.c:5556:10: warning: variable ‘iTest’ set but not used [-Wunused-but-set-variable]
 5556 |     Int2 iTest;
      |          ^~~~~
algorend.c: In function ‘AlgorithmicRendering’:
algorend.c:5684:10: warning: unused variable ‘i’ [-Wunused-variable]
 5684 |     Int2 i = 0;
      |          ^
algorend.c:5683:10: warning: unused variable ‘Cn3d_LayerNow_sofar’ [-Wunused-variable]
 5683 |     Int2 Cn3d_LayerNow_sofar = 0;
      |          ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from algorend.c:598:
algorend.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
algorend.c:789:21: warning: ‘currentIndex’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                     ^~~~~~~~~~~~
algorend.c:789:40: warning: ‘currentSize’ defined but not used [-Wunused-variable]
  789 |     static Nlm_Int2 currentIndex = -1, currentSize = -1;
      |                                        ^~~~~~~~~~~
algorend.c:790:24: warning: ‘currentBold’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                        ^~~~~~~~~~~
algorend.c:790:45: warning: ‘currentItalic’ defined but not used [-Wunused-variable]
  790 |     static Nlm_Boolean currentBold = FALSE, currentItalic = FALSE,
      |                                             ^~~~~~~~~~~~~
algorend.c:791:24: warning: ‘currentUnderlined’ defined but not used [-Wunused-variable]
  791 |                        currentUnderlined = FALSE;
      |                        ^~~~~~~~~~~~~~~~~
algorend.c:2265:13: warning: ‘LabelGroupOnOffProc’ defined but not used [-Wunused-function]
 2265 | static void LabelGroupOnOffProc(GrouP g)
      |             ^~~~~~~~~~~~~~~~~~~
algorend.c:717:16: warning: ‘Cn3d_CopyToNode’ defined but not used [-Wunused-variable]
  717 | static Boolean Cn3d_CopyToNode = FALSE;
      |                ^~~~~~~~~~~~~~~
algorend.c: In function ‘MasterChangeRenderProc’:
algorend.c:1295:29: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1295 |             pars->PBBRender = k;
      |             ~~~~~~~~~~~~~~~~^~~
algorend.c: In function ‘RenderLabel’:
algorend.c:3448:15: warning: ‘fZCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3448 |         fZCen += fZt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3447:15: warning: ‘fYCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3447 |         fYCen += fYt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3446:15: warning: ‘fXCen’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3446 |         fXCen += fXt / l;
      |         ~~~~~~^~~~~~~~~~
algorend.c:3449:41: warning: ‘fZTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:77: warning: ‘fYTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                                      ~~~~~~~^~~~~~~
algorend.c:3450:41: warning: ‘fXTo’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                  ~~~~~~~^~~~~~~
algorend.c:3449:58: warning: ‘fZFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |                                                   ~~~~~~~^~~~~~~~~
algorend.c:3449:22: warning: ‘fYFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3449 |         fXt = (fYCen - fYFrom) * (fZCen - fZTo) - (fZCen - fZFrom) * (fYCen - fYTo);
      |               ~~~~~~~^~~~~~~~~
algorend.c:3450:58: warning: ‘fXFrom’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3450 |         fYt = (fZCen - fZFrom) * (fXCen - fXTo) - (fXCen - fXFrom) * (fZCen - fZTo);
      |                                                   ~~~~~~~^~~~~~~~~
mv algorend.o algorend.glo
mv algorend.tmp algorend.o
mv cn3dmsel.o cn3dmsel.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsel.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsel.c:60:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dmsel.o cn3dmsel.glo
mv cn3dmsel.tmp cn3dmsel.o
mv cn3dopen.o cn3dopen.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dopen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dopen.c:394:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dopen.c: In function ‘Cn3D_OpenStart’:
cn3dopen.c:722:10: warning: unused variable ‘iBioseq’ [-Wunused-variable]
  722 |     Int4 iBioseq = 0;
      |          ^~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:1000:19: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
 1000 |             PDNML pdnmlThis = NULL;
      |                   ^~~~~~~~~
cn3dopen.c:989:25: warning: unused variable ‘pbsasThis’ [-Wunused-variable]
  989 |     BiostrucAlignSeqPtr pbsasThis = NULL;
      |                         ^~~~~~~~~
cn3dopen.c: In function ‘Cn3D_NetOpenBiostruc’:
cn3dopen.c:1310:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
 1310 |     ButtoN b;
      |            ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dopen.c:412:
cn3dopen.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dopen.c:413:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
cn3dopen.c:431:15: warning: ‘Cn3D_bOpenBrowse’ defined but not used [-Wunused-variable]
  431 | static ButtoN Cn3D_bOpenBrowse;
      |               ^~~~~~~~~~~~~~~~
cn3dopen.c:430:15: warning: ‘Cn3D_wOpen’ defined but not used [-Wunused-variable]
  430 | static WindoW Cn3D_wOpen;
      |               ^~~~~~~~~~
cn3dopen.c: In function ‘MMDB_ReadMime’:
cn3dopen.c:529:9: warning: ‘salp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  529 |         SAM_ReplaceGI(salp);
      |         ^~~~~~~~~~~~~~~~~~~
cn3dopen.c:513:15: note: ‘salp’ was declared here
  513 |     SeqAlign *salp;
      |               ^~~~
mv cn3dopen.o cn3dopen.glo
mv cn3dopen.tmp cn3dopen.o
mv cn3dsave.o cn3dsave.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dsave.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dsave.c:157:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dsave.c: In function ‘Cn3D_AddMatrix’:
cn3dsave.c:206:41: warning: unused variable ‘bsfsp_new’ [-Wunused-variable]
  206 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_new = NULL;
      |                                         ^~~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportAsnNow’:
cn3dsave.c:375:11: warning: unused variable ‘pdnmlThis’ [-Wunused-variable]
  375 |     PDNML pdnmlThis = NULL;
      |           ^~~~~~~~~
cn3dsave.c:372:24: warning: variable ‘pbsfThis’ set but not used [-Wunused-but-set-variable]
  372 |     BiostrucFeaturePtr pbsfThis;
      |                        ^~~~~~~~
cn3dsave.c:366:10: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  366 |     PMSD pmsdSlave = NULL, pmsdMaster = NULL;
      |          ^~~~~~~~~
cn3dsave.c:362:27: warning: variable ‘FirstSlave’ set but not used [-Wunused-but-set-variable]
  362 |     Boolean iCn3d = TRUE, FirstSlave = FALSE;
      |                           ^~~~~~~~~~
cn3dsave.c:357:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  357 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveBiostruc’:
cn3dsave.c:524:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  524 |     ButtoN b;
      |            ^
cn3dsave.c:523:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  523 |     GrouP gMS;
      |           ^~~
cn3dsave.c:518:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  518 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_ExportDictNow’:
cn3dsave.c:598:13: warning: unused variable ‘pcSave’ [-Wunused-variable]
  598 |     CharPtr pcSave = NULL;
      |             ^~~~~~
cn3dsave.c:596:10: warning: unused variable ‘iCount’ [-Wunused-variable]
  596 |     Int4 iCount = 0;
      |          ^~~~~~
cn3dsave.c: In function ‘Cn3D_SaveDictionary’:
cn3dsave.c:629:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  629 |     ButtoN b;
      |            ^
cn3dsave.c:624:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  624 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dsave.c: In function ‘Cn3D_SaveSub’:
cn3dsave.c:688:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  688 |     IteM i;
      |          ^
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dsave.c:171:
cn3dsave.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dsave.c:184:15: warning: ‘Cn3D_bFeatOn’ defined but not used [-Wunused-variable]
  184 | static ButtoN Cn3D_bFeatOn;
      |               ^~~~~~~~~~~~
In file included from cn3dsave.c:165:
../include/asnmime.h:119:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  119 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmime.h:118:19: warning: ‘at’ defined but not used [-Wunused-variable]
  118 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmime.h:117:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  117 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmime.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmime.h12";
      |               ^~~~~~~~~~~
cn3dsave.c: In function ‘Cn3D_GetSubSet.isra.0’:
cn3dsave.c:289:24: warning: ‘isep’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  289 |             isep->next = SeqEntryNew();
      |             ~~~~~~~~~~~^~~~~~~~~~~~~~~
mv cn3dsave.o cn3dsave.glo
mv cn3dsave.tmp cn3dsave.o
mv cn3dxprt.o cn3dxprt.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dxprt.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dxprt.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportPDB’:
cn3dxprt.c:209:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  209 |     ButtoN b;
      |            ^
cn3dxprt.c:208:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  208 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:203:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  203 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportKin’:
cn3dxprt.c:381:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  381 |     ButtoN b;
      |            ^
cn3dxprt.c:380:11: warning: variable ‘gMS’ set but not used [-Wunused-but-set-variable]
  380 |     GrouP gMS;
      |           ^~~
cn3dxprt.c:375:10: warning: variable ‘pmsdThis’ set but not used [-Wunused-but-set-variable]
  375 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dxprt.c: In function ‘Cn3D_ExportSub’:
cn3dxprt.c:513:10: warning: variable ‘i’ set but not used [-Wunused-but-set-variable]
  513 |     IteM i;
      |          ^
mv cn3dxprt.o cn3dxprt.glo
mv cn3dxprt.tmp cn3dxprt.o
mv cn3dwin.o cn3dwin.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dwin.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dwin.c:647:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dwin.c:733:1: warning: missing braces around initializer [-Wmissing-braces]
  733 | {
      | ^
  734 |   255, 255, 255, /* default     0 */
      |   {            }
  735 |   255,  20, 147, /* hotpink     1 */
      |   {            }
  736 |   255,   0, 255, /* magenta     2 */
      |   {            }
  737 |   155, 48, 255, /* purple      3 */
      |   {           }
  738 |     0,   0, 255, /* blue        4 */
      |     {          }
  739 |    30, 144, 255, /* sky         5 */
      |    {           }
  740 |     0, 255, 255, /* cyan        6 */
      |     {          }
  741 |     0, 255, 127, /* sea         7 */
      |     {          }
  742 |     0, 255,   0, /* green       8 */
      |     {          }
  743 |   255, 255,   0, /* yellow      9 */
      |   {            }
  744 |   255, 165,   0, /* gold       10 */
      |   {            }
  745 |   255,  69,   0, /* orange     11 */
      |   {            }
  746 |   255,   0,   0, /* red        12 */
      |   {            }
  747 |   255, 114,  86, /* pink       13 */
      |   {            }
  748 |   255, 174, 185, /* pinktint   14 */
      |   {            }
  749 |   255, 255, 255, /* white      15 */
      |   {            }
  750 |     0,   0,   0, /* black      16 */
      |     {          }
  751 |   176, 226, 255, /* bluetint   17 */
      |   {            }
  752 |   154, 255, 154, /* greentint  18 */
      |   {            }
  753 |   255, 236, 139, /* yellowtint 19 */
      |   {            }
  754 |   125, 125, 125, /* gray       20 */
      |   {            }
  755 |   139,  87,  66, /* brown      21 */
      |   {            }
  756 |   255,   0,   0, /* perm colors 22: red */
      |   {            }
  757 |     0, 255,   0, /* perm colors 23: green */
      |     {          }
  758 |   255,   0, 255, /* perm colors 24: magenta */
      |   {            }
  759 |    30, 144, 255, /* perm colors 25: sky */
      |    {           }
  760 |   155, 48, 255, /* perm colors 26: purple */
      |   {           }
  761 |     0, 255,   0, /* SS colors 27: helix, green */
      |     {          }
  762 |   255, 165,   0, /* SS colors 28: strand, gold */
      |   {            }
  763 |   255,  69,   0, /* SS colors 29: turn, orange */
      |   {            }
  764 |     0, 255, 255, /* SS colors 30: coil, cyan */
      |     {          }
  765 |   255, 255,   0, /* highlight colors 31: yellow */
      |   {            }
  766 |     0,   0,   0, /* background colors 32: black */
      |     {          }
  767 |   160,  82,  45, /* sienna 33 */
      |   {            }
  768 |   240, 230, 140, /* khaki 34 */
      |   {            }
  769 |   171, 130, 255, /* light purple 35 */
      |   {            }
  770 |   255, 200,   0, /* orange yellow 36 */
      |   {            }
  771 |   117, 128, 160, /* 37 */
      |   {            }
  772 |     5,  53, 239, /* 38 */
      |     {          }
  773 |    27,  62, 255, /* 39 */
      |    {           }
  774 |    84, 110, 203, /* 40 */
      |    {           }
  775 |   216,  77,  84, /* 41 */
      |   {            }
  776 |   125, 128, 135, /* 42 */
      |   {            }
  777 |   237,  29,  61, /* 43 */
      |   {            }
  778 |   184, 118, 120, /* 44 */
      |   {            }
  779 |   155,   9,   0, /* 45 */
      |   {            }
  780 |   155, 119, 107, /* 46 */
      |   {            }
  781 |    80, 110, 196, /* 47 */
      |    {           }
  782 |   122, 127, 157, /* 48 */
      |   {            }
  783 |    50,  85, 241, /* 49 */
      |    {           }
  784 |   201,  93,  91, /* 50 */
      |   {            }
  785 |   254,   0,   5, /* 51 */
      |   {            }
  786 |   155, 137, 133, /* 52 */
      |   {            }
  787 |     3,  53, 246  /* 53 */
      |     {
  788 | };
      | }
cn3dwin.c: In function ‘Cn3D_Default_HLColor’:
cn3dwin.c:982:27: warning: variable ‘colorB’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                           ^~~~~~
cn3dwin.c:982:19: warning: variable ‘colorG’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |                   ^~~~~~
cn3dwin.c:982:11: warning: variable ‘colorR’ set but not used [-Wunused-but-set-variable]
  982 |     Uint1 colorR, colorG, colorB;
      |           ^~~~~~
cn3dwin.c: In function ‘Cn3D_RedrawEx’:
cn3dwin.c:1251:19: warning: unused variable ‘iColor’ [-Wunused-variable]
 1251 |     DDV_ColorCell iColor;
      |                   ^~~~~~
cn3dwin.c: In function ‘fnPreCHLresidue’:
cn3dwin.c:1543:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 1543 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c: In function ‘Viewer3DGroups’:
cn3dwin.c:1728:10: warning: unused variable ‘groups’ [-Wunused-variable]
 1728 |     Int2 groups = 0;
      |          ^~~~~~
cn3dwin.c: In function ‘Cn3D_AlignEdit’:
cn3dwin.c:1936:10: warning: unused variable ‘iCount’ [-Wunused-variable]
 1936 |     Int2 iCount = 0;
      |          ^~~~~~
cn3dwin.c:1935:10: warning: variable ‘pmmdThis’ set but not used [-Wunused-but-set-variable]
 1935 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dwin.c:1933:17: warning: unused variable ‘salp’ [-Wunused-variable]
 1933 |     SeqAlignPtr salp = NULL;
      |                 ^~~~
cn3dwin.c:1931:29: warning: variable ‘pmsdSlave’ set but not used [-Wunused-but-set-variable]
 1931 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dwin.c:1930:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
 1930 |     PDNMS pdnmsSlave = NULL;
      |           ^~~~~~~~~~
cn3dwin.c: In function ‘Cn3D_Menus’:
cn3dwin.c:2131:11: warning: cast to pointer from integer of different size [-Wint-to-pointer-cast]
 2131 |           (Nlm_VoidPtr) i, NULL);
      |           ^
cn3dwin.c: In function ‘Cn3DWin’:
cn3dwin.c:2364:5: warning: implicit declaration of function ‘Nlm_SetOGLContext’; did you mean ‘Nlm_InitAppContext’? [-Wimplicit-function-declaration]
 2364 |     Nlm_SetOGLContext(NULL, NULL, NULL, NULL);
      |     ^~~~~~~~~~~~~~~~~
      |     Nlm_InitAppContext
In file included from ../include/sqnutils.h:51,
                 from ../include/udviewer.h:219,
                 from cn3dwin.c:665:
cn3dwin.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/udviewer.h:228,
                 from cn3dwin.c:665:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dwin.c:1626:13: warning: ‘HLmolecule_MA’ defined but not used [-Wunused-function]
 1626 | static void HLmolecule_MA(MAPtr ma,
      |             ^~~~~~~~~~~~~
cn3dwin.c:1428:13: warning: ‘HLatom_MA’ defined but not used [-Wunused-function]
 1428 | static void HLatom_MA(MAPtr ma,
      |             ^~~~~~~~~
cn3dwin.c:1349:25: warning: ‘DoHighlightSeg’ defined but not used [-Wunused-function]
 1349 | static void LIBCALLBACK DoHighlightSeg(PFB pfbThis,
      |                         ^~~~~~~~~~~~~~
cn3dwin.c:979:13: warning: ‘Cn3D_Default_HLColor’ defined but not used [-Wunused-function]
  979 | static void Cn3D_Default_HLColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:953:13: warning: ‘Cn3D_BgColor’ defined but not used [-Wunused-function]
  953 | static void Cn3D_BgColor(IteM i)
      |             ^~~~~~~~~~~~
cn3dwin.c:936:13: warning: ‘Cn3D_Default_BgColor’ defined but not used [-Wunused-function]
  936 | static void Cn3D_Default_BgColor(IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~
cn3dwin.c:929:13: warning: ‘Cn3D_MoveCB’ defined but not used [-Wunused-function]
  929 | static void Cn3D_MoveCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:922:13: warning: ‘Cn3D_ZoomCB’ defined but not used [-Wunused-function]
  922 | static void Cn3D_ZoomCB(IteM i)
      |             ^~~~~~~~~~~
cn3dwin.c:719:14: warning: ‘Cn3D_gViewCtrl’ defined but not used [-Wunused-variable]
  719 | static GrouP Cn3D_gViewCtrl;
      |              ^~~~~~~~~~~~~~
cn3dwin.c:713:14: warning: ‘Cn3D_gViewer’ defined but not used [-Wunused-variable]
  713 | static GrouP Cn3D_gViewer;
      |              ^~~~~~~~~~~~
cn3dwin.c:688:13: warning: ‘Cn3D_iModelCtrl’ defined but not used [-Wunused-variable]
  688 | static IteM Cn3D_iModelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:682:13: warning: ‘Cn3D_iLabelCtrl’ defined but not used [-Wunused-variable]
  682 | static IteM Cn3D_iLabelCtrl = NULL;
      |             ^~~~~~~~~~~~~~~
cn3dwin.c:676:14: warning: ‘Cn3D_Vy’ defined but not used [-Wunused-variable]
  676 | static Uint2 Cn3D_Vy, Cn3D_Rx;
      |              ^~~~~~~
mv cn3dwin.o cn3dwin.glo
mv cn3dwin.tmp cn3dwin.o
mv cn3dentr.o cn3dentr.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dentr.c:81:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
mv cn3dentr.o cn3dentr.glo
mv cn3dentr.tmp cn3dentr.o
mv cn3dmsg.o cn3dmsg.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmsg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmsg.c:254:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmsg.c: In function ‘SeqStrucMediaMsgFunc’:
cn3dmsg.c:593:19: warning: variable ‘omudp’ set but not used [-Wunused-but-set-variable]
  593 |     OMUserDataPtr omudp = NULL;
      |                   ^~~~~
In file included from ../include/sqnutils.h:51,
                 from cn3dmsg.c:267:
cn3dmsg.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmsg.c:271:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmsg.o cn3dmsg.glo
mv cn3dmsg.tmp cn3dmsg.o
mv cn3dmatn.o cn3dmatn.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmatn.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmatn.c:173:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmatn.c: In function ‘FindMM’:
cn3dmatn.c:217:29: warning: unused variable ‘pdnmsThisSlave’ [-Wunused-variable]
  217 |     PDNMS pdnmsThis = NULL, pdnmsThisSlave = NULL;
      |                             ^~~~~~~~~~~~~~
cn3dmatn.c: In function ‘DoMediaHL’:
cn3dmatn.c:249:10: warning: variable ‘MainAtom’ set but not used [-Wunused-but-set-variable]
  249 |     Byte MainAtom = 0;
      |          ^~~~~~~~
cn3dmatn.c:247:10: warning: unused variable ‘paldThis’ [-Wunused-variable]
  247 |     PALD paldThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:246:11: warning: unused variable ‘pvnalThis’ [-Wunused-variable]
  246 |     PVNAL pvnalThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c:245:10: warning: unused variable ‘pmadThis’ [-Wunused-variable]
  245 |     PMAD pmadThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:244:11: warning: unused variable ‘pvnmaThis’ [-Wunused-variable]
  244 |     PVNMA pvnmaThis = NULL;
      |           ^~~~~~~~~
cn3dmatn.c: In function ‘Cn3DCheckAndDoHighlight’:
cn3dmatn.c:372:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  372 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmatn.c:371:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  371 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
mv cn3dmatn.o cn3dmatn.glo
mv cn3dmatn.tmp cn3dmatn.o
mv cn3dmodl.o cn3dmodl.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmodl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckNoSingleHighlight’:
cn3dmodl.c:353:11: warning: unused variable ‘pdnmgThis’ [-Wunused-variable]
  353 |     PDNMG pdnmgThis = NULL;
      |           ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3DCheckHighlighted’:
cn3dmodl.c:364:29: warning: unused variable ‘pmsdSlave’ [-Wunused-variable]
  364 |     PMSD pmsdMaster = NULL, pmsdSlave = NULL;
      |                             ^~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ReSetVisibleStatus’:
cn3dmodl.c:508:10: warning: unused variable ‘pmgd’ [-Wunused-variable]
  508 |     PMGD pmgd = NULL;
      |          ^~~~
cn3dmodl.c:507:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
  507 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:506:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  506 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘fnAlignList’:
cn3dmodl.c:996:25: warning: unused variable ‘itemtype’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |                         ^~~~~~~~
cn3dmodl.c:996:11: warning: unused variable ‘entityID’ [-Wunused-variable]
  996 |     Uint2 entityID = 0, itemtype = 0;
      |           ^~~~~~~~
cn3dmodl.c:995:14: warning: unused variable ‘sipThis’ [-Wunused-variable]
  995 |     SeqIdPtr sipThis = NULL;
      |              ^~~~~~~
cn3dmodl.c:993:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
  993 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SynchronizeModVisibleStatus’:
cn3dmodl.c:1065:11: warning: unused variable ‘pdnmg’ [-Wunused-variable]
 1065 |     PDNMG pdnmg = NULL;
      |           ^~~~~
cn3dmodl.c:1064:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 1064 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dmodl.c: In function ‘SetResidueVisibilities’:
cn3dmodl.c:1201:11: warning: unused variable ‘pvnmoThis’ [-Wunused-variable]
 1201 |     PVNMO pvnmoThis = NULL;
      |           ^~~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dmodl.c:319:
cn3dmodl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from cn3dmodl.c:323:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cn3dmodl.c: In function ‘Cn3D_ListDomainProc’:
cn3dmodl.c:413:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                                  ^~
cn3dmodl.c:413:30: note: directive argument in the range [-32768, 32767]
  413 |             sprintf(MolName, "%4s  %2s  %2d",
      |                              ^~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 32 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmodl.c:410:34: warning: ‘  ’ directive writing 2 bytes into a region of size between 1 and 16 [-Wformat-overflow=]
  410 |             sprintf(MolName, "%4s  %2s", domaindata[iCount]->pcPDBName,
      |                                  ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cn3dmodl.c:302:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 24 bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
mv cn3dmodl.o cn3dmodl.glo
mv cn3dmodl.tmp cn3dmodl.o
mv cn3dshim.o cn3dshim.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dshim.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/cn3dmain.h:182,
                 from cn3dshim.c:131:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dshim.c: In function ‘Cn3D_Size’:
cn3dshim.c:413:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  413 |     PMSD pmsdThis;
      |          ^~~~~~~~
cn3dshim.c:412:11: warning: unused variable ‘pdnmsSlave’ [-Wunused-variable]
  412 |     PDNMS pdnmsSlave;
      |           ^~~~~~~~~~
cn3dshim.c: In function ‘Cn3D_SizeCB’:
cn3dshim.c:399:36: warning: iteration 1 invokes undefined behavior [-Waggressive-loop-optimizations]
  399 |                         BoundBox->x[i + 1]) BoundBox->x[i + 1] =
      |                         ~~~~~~~~~~~^~~~~~~
cn3dshim.c:395:17: note: within this loop
  395 |                 for (i = 0; i < 6; i += 2) { /* check to see if the atom lies outside the bound box */
      |                 ^~~
cn3dshim.c:391:36: warning: iteration 2 invokes undefined behavior [-Waggressive-loop-optimizations]
  391 |                     BoundBox->x[i] = pflvDataThis[i / (int) 2];
      |                     ~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dshim.c:390:17: note: within this loop
  390 |                 for (i = 0; i < 6; i++) {
      |                 ^~~
mv cn3dshim.o cn3dshim.glo
mv cn3dshim.tmp cn3dshim.o
mv cn3dmesh.o cn3dmesh.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dmesh.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from cn3dmesh.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:103:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
  103 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
cn3dmesh.c: In function ‘Cn3D_OpenMesh’:
cn3dmesh.c:151:12: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
  151 |     ButtoN b;
      |            ^
cn3dmesh.c: In function ‘Cn3D_MeshAcceptProc’:
cn3dmesh.c:111:5: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  111 |     fscanf(hFile, "%d %d %d", &(Mesh.NumVert), &(Mesh.NumEdge),
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  112 |            &(Mesh.NumTri));
      |            ~~~~~~~~~~~~~~~
cn3dmesh.c:119:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  119 |         fscanf(hFile, "%lf %lf %lf %lf %lf %lf %f %f %f %d %d %d",
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  120 |                &(Mesh.Vertices[i].Vertex[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  121 |                &(Mesh.Vertices[i].Vertex[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  122 |                &(Mesh.Vertices[i].Vertex[2]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  123 |                &(Mesh.Vertices[i].Normal[0]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  124 |                &(Mesh.Vertices[i].Normal[1]),
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  125 |                &(Mesh.Vertices[i].Normal[2]), &fDummy, &fDummy, &fDummy,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  126 |                &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:129:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  129 |         fscanf(hFile, "%d %d %d %d %d", &Mesh.Edges[i].Vertex[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  130 |                &Mesh.Edges[i].Vertex[1], &lDummy, &lDummy, &lDummy);
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dmesh.c:133:9: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  133 |         fscanf(hFile, "%d %d %d %d %d %d %d %d %d", &Mesh.Tri[i].Edge[0],
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  134 |                &Mesh.Tri[i].Edge[1], &Mesh.Tri[i].Edge[2],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  135 |                &Mesh.Tri[i].Vertex[0], &Mesh.Tri[i].Vertex[1],
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  136 |                &Mesh.Tri[i].Vertex[2], &lDummy, &Mesh.Tri[i].Atom,
      |                ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
  137 |                &lDummy);
      |                ~~~~~~~~
mv cn3dmesh.o cn3dmesh.glo
mv cn3dmesh.tmp cn3dmesh.o
mv cn3dstyl.o cn3dstyl.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL cn3dstyl.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dstyl.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dstyl.c: In function ‘GetThisSpecialAlgorRenderSet’:
cn3dstyl.c:459:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
  459 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘GetSpecialAlgorRenderSet’:
cn3dstyl.c:641:10: warning: unused variable ‘parsThis’ [-Wunused-variable]
  641 |     PARS parsThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:640:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
  640 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ChangeSpecialLabelsProc’:
cn3dstyl.c:867:16: warning: unused variable ‘TopOn’ [-Wunused-variable]
  867 |         FALSE, TopOn = FALSE;
      |                ^~~~~
cn3dstyl.c:866:44: warning: unused variable ‘PDBOn’ [-Wunused-variable]
  866 |     Boolean NumOn = FALSE, NameOn = FALSE, PDBOn = FALSE, WhiteOn =
      |                                            ^~~~~
cn3dstyl.c:864:17: warning: unused variable ‘k’ [-Wunused-variable]
  864 |     Int2 i = 0, k = 0, nameval = 0;
      |                 ^
cn3dstyl.c: In function ‘ModelSetLabelCtrls’:
cn3dstyl.c:1059:37: warning: variable ‘size’ set but not used [-Wunused-but-set-variable]
 1059 |     Int2 i = 0, val = 0, style = 0, size = 0;
      |                                     ^~~~
cn3dstyl.c: In function ‘lFeatureEditedAction’:
cn3dstyl.c:1136:10: warning: unused variable ‘val’ [-Wunused-variable]
 1136 |     Int4 val = 0;
      |          ^~~
cn3dstyl.c: In function ‘bFeatureMoveAction’:
cn3dstyl.c:1153:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1153 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘bFeatureEditAction’:
cn3dstyl.c:1176:23: warning: unused variable ‘sfpThis’ [-Wunused-variable]
 1176 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c: In function ‘ModelControls’:
cn3dstyl.c:1364:19: warning: variable ‘ppt13’ set but not used [-Wunused-but-set-variable]
 1364 |     PrompT ppt12, ppt13, ppt14;
      |                   ^~~~~
cn3dstyl.c:1363:9: warning: unused variable ‘ppt11’ [-Wunused-variable]
 1363 |         ppt11;
      |         ^~~~~
cn3dstyl.c:1362:60: warning: unused variable ‘ppt9’ [-Wunused-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                                            ^~~~
cn3dstyl.c:1362:36: warning: variable ‘ppt5’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |                                    ^~~~
cn3dstyl.c:1362:12: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
 1362 |     PrompT ppt1, ppt2, ppt3, ppt4, ppt5, ppt6, ppt7, ppt8, ppt9, ppt10,
      |            ^~~~
cn3dstyl.c: In function ‘GetBiostrucFeatureLocationForHihglightedResidues’:
cn3dstyl.c:1728:30: warning: variable ‘SingleInterval’ set but not used [-Wunused-but-set-variable]
 1728 |     Boolean Started = FALSE, SingleInterval, UserDefinedFeatureFound =
      |                              ^~~~~~~~~~~~~~
cn3dstyl.c:1725:20: warning: variable ‘iMolCurrent’ set but not used [-Wunused-but-set-variable]
 1725 |     Int2 iMol = 0, iMolCurrent = 0;
      |                    ^~~~~~~~~~~
cn3dstyl.c: In function ‘MakeBiostrucFeatureSetForUserDefinedFeature’:
cn3dstyl.c:2122:60: warning: unused variable ‘bsfsp_tail’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                                            ^~~~~~~~~~
cn3dstyl.c:2122:41: warning: unused variable ‘bsfsp_head’ [-Wunused-variable]
 2122 |     BiostrucFeatureSetPtr bsfsp = NULL, bsfsp_head = NULL, bsfsp_tail =
      |                                         ^~~~~~~~~~
cn3dstyl.c: In function ‘GetUserDefinedFeature’:
cn3dstyl.c:2196:27: warning: unused variable ‘sfipThis’ [-Wunused-variable]
 2196 |     SpecialFeatureInfoPtr sfipThis = NULL;
      |                           ^~~~~~~~
cn3dstyl.c: In function ‘Cn3DIndexUserDefinedFeature’:
cn3dstyl.c:2551:23: warning: variable ‘sfpThis’ set but not used [-Wunused-but-set-variable]
 2551 |     SpecialFeaturePtr sfpThis = NULL;
      |                       ^~~~~~~
cn3dstyl.c:2549:10: warning: unused variable ‘pmmdThis’ [-Wunused-variable]
 2549 |     PMMD pmmdThis = NULL;
      |          ^~~~~~~~
cn3dstyl.c:2548:11: warning: unused variable ‘pdnmmHead’ [-Wunused-variable]
 2548 |     PDNMM pdnmmHead = NULL;
      |           ^~~~~~~~~
cn3dstyl.c:2547:10: warning: unused variable ‘pmsdThis’ [-Wunused-variable]
 2547 |     PMSD pmsdThis = NULL;
      |          ^~~~~~~~
In file included from ../include/cn3dopen.h:111,
                 from cn3dstyl.c:89:
cn3dstyl.c: At top level:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:456:30: warning: ‘GetThisSpecialAlgorRenderSet’ defined but not used [-Wunused-function]
  456 | static SpecialFeatureInfoPtr GetThisSpecialAlgorRenderSet(Int2 id)
      |                              ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c:149:15: warning: ‘bResetFeatureTitle’ defined but not used [-Wunused-variable]
  149 | static ButtoN bResetFeatureTitle;
      |               ^~~~~~~~~~~~~~~~~~
cn3dstyl.c:144:14: warning: ‘Cn3D_pupModelStyleItem’ defined but not used [-Wunused-variable]
  144 | static PopuP Cn3D_pupModelStyleItem;
      |              ^~~~~~~~~~~~~~~~~~~~~~
cn3dstyl.c: In function ‘CopyLocation’:
cn3dstyl.c:496:27: warning: ‘rsipNewHead’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  496 |     rspNew->data.ptrvalue = (VoidPtr) rsipNewHead;
      |     ~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~
mv cn3dstyl.o cn3dstyl.glo
mv cn3dstyl.tmp cn3dstyl.o
mv seqcons.o seqcons.tmp
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF -D_OPENGL seqcons.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from seqcons.c:112:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from seqcons.c:115:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from seqcons.c:116:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
seqcons.c:263:19: warning: ‘CSC_Blosum62Fields’ defined but not used [-Wunused-const-variable=]
  263 | static const char CSC_Blosum62Fields[CSC_BLOSUMSIZE] =
      |                   ^~~~~~~~~~~~~~~~~~
seqcons.c: In function ‘CSC_Algorithm_ByBlosum62’:
seqcons.c:402:43: warning: ‘minScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                 ~~~~~~~~~~^~~~~~~~~~~
seqcons.c:402:67: warning: ‘maxScore’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  402 |             scale = 1.0 - 1.0 * (score[i] - minScore) / (maxScore - minScore);
      |                                                         ~~~~~~~~~~^~~~~~~~~~~
mv seqcons.o seqcons.glo
mv seqcons.tmp seqcons.o
rm -f libncbicn3dOGL.a
ar cru libncbicn3dOGL.a algorend.glo cn3dmsel.glo cn3dopen.glo cn3dsave.glo cn3dxprt.glo cn3dwin.glo cn3dentr.glo cn3dmsg.glo cn3dmatn.glo cn3dmodl.glo cn3dshim.glo cn3dmesh.glo cn3dstyl.glo seqcons.glo
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbicn3dOGL.a ../lib
ranlib ../lib/libncbicn3dOGL.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF aa_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_diagnostics.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_engine.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_extend.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_filter.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_gapalign.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hits.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_itree.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_lookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seg.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqsrc.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_sw.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_setup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_stat.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback.c
blast_traceback.c: In function ‘BLAST_ComputeTraceback_MT’:
blast_traceback.c:1500: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 1500 | #pragma omp parallel for default(none) num_threads(actual_num_threads) schedule(guided) if (actual_num_threads > 1) \
      | 
blast_traceback.c:1524: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1524 | #pragma omp critical(retval)
      | 
blast_traceback.c:1530: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 1530 | #pragma omp flush(has_been_interrupted)
      | 
blast_traceback.c:1561: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1561 | #pragma omp critical(tback_gen_code)
      | 
blast_traceback.c:1591: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1591 | #pragma omp critical(retval)
      | 
blast_traceback.c:1631: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1631 | #pragma omp critical(tback_gen_code)
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_util.c
blast_util.c: In function ‘BlastProgram2Number’:
blast_util.c:306:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  306 |     else if (strcasecmp("mapper", program) == 0)
      |          ^~
blast_util.c:309:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  309 |  return 0;
      |  ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gapinfo.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF greedy_align.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF link_hsps.c
link_hsps.c: In function ‘s_FwdCompareHSPs’:
link_hsps.c:133:10: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  133 |     else if (h1->context > h2->context)
      |          ^~
link_hsps.c:136:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  136 |  if (h1->query.offset < h2->query.offset)
      |  ^~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_wrap.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF na_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_math.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF ncbi_std.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF pattern.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_extend.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_lookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF lookup_util.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_encoding.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_psi_priv.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_kappa.c
blast_kappa.c: In function ‘Blast_RedoAlignmentCore_MT’:
blast_kappa.c:3407: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 3407 | #pragma omp parallel \
      | 
blast_kappa.c:3426: warning: ignoring #pragma omp for [-Wunknown-pragmas]
 3426 | #pragma omp for schedule(static)
      | 
blast_kappa.c:3428: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3428 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3489: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3489 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3491: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3491 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3504: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3504 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3506: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3506 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3722: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 3722 | #pragma omp critical(intrpt)
      | 
blast_kappa.c:3724: warning: ignoring #pragma omp flush [-Wunknown-pragmas]
 3724 | #pragma omp flush(interrupt)
      | 
blast_kappa.c:3730: warning: ignoring #pragma omp barrier [-Wunknown-pragmas]
 3730 | #pragma omp barrier
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF matrix_freq_ratios.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_parameters.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_posit.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF phi_gapalign.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_program.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_query_info.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tune.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aalookup.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nalookup.c
blast_nalookup.c: In function ‘s_NaHashLookupScanSubjectForWordCounts’:
blast_nalookup.c:1850: warning: ignoring #pragma omp parallel [-Wunknown-pragmas]
 1850 | #pragma omp parallel for if (num_threads > 1) num_threads(num_threads) \
      | 
blast_nalookup.c:1858: warning: ignoring #pragma omp critical [-Wunknown-pragmas]
 1858 | #pragma omp critical (get_sequence_for_word_counts)
      | 
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_aascan.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_nascan.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_dynarray.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF split_query.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF gencode_singleton.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF index_ungapped.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_collector.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_hspstream_mt_utils.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_traceback_mt_priv.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF boost_erf.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF jumper.c
rm -f libblast.a
ar cru libblast.a aa_ungapped.o blast_diagnostics.o blast_engine.o blast_extend.o blast_filter.o blast_gapalign.o blast_hits.o blast_itree.o blast_lookup.o blast_message.o blast_options.o blast_seg.o blast_seqsrc.o blast_sw.o blast_setup.o blast_stat.o blast_traceback.o blast_util.o gapinfo.o greedy_align.o link_hsps.o lookup_wrap.o na_ungapped.o ncbi_math.o ncbi_std.o pattern.o phi_extend.o phi_lookup.o lookup_util.o blast_encoding.o blast_psi.o blast_psi_priv.o blast_kappa.o matrix_freq_ratios.o blast_hspstream.o blast_parameters.o blast_posit.o phi_gapalign.o blast_program.o blast_query_info.o blast_tune.o blast_aalookup.o blast_nalookup.o blast_aascan.o blast_nascan.o blast_dynarray.o split_query.o gencode_singleton.o index_ungapped.o hspfilter_collector.o blast_hspstream_mt_utils.o blast_traceback_mt_priv.o boost_erf.o jumper.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblast.a ../lib
ranlib ../lib/libblast.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_api.c: In function ‘s_BlastRPSInfoInit’:
blast_api.c:149:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  149 |    fscanf(auxfile, "%s", buffer);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:151:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  151 |    fscanf(auxfile, "%d", &info->aux_info.gap_open_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:152:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  152 |    fscanf(auxfile, "%d", &info->aux_info.gap_extend_penalty);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:153:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  153 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_k);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:154:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  154 |    fscanf(auxfile, "%le", &info->aux_info.ungapped_h);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:155:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  155 |    fscanf(auxfile, "%d", &info->aux_info.max_db_seq_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:156:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  156 |    fscanf(auxfile, "%d", &info->aux_info.db_length);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:157:4: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  157 |    fscanf(auxfile, "%lf", &info->aux_info.scale_factor);
      |    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:161:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  161 |       fscanf(auxfile, "%d", &seq_size); /* not used */
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:162:7: warning: ignoring return value of ‘fscanf’, declared with attribute warn_unused_result [-Wunused-result]
  162 |       fscanf(auxfile, "%le", &info->aux_info.karlin_k[i]);
      |       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:104:25: warning: ‘.loo’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  104 |    sprintf(filename, "%s.loo", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:123:25: warning: ‘.rps’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  123 |    sprintf(filename, "%s.rps", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:144:25: warning: ‘.aux’ directive writing 4 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  144 |    sprintf(filename, "%s.aux", (char *)pathname);
      |                         ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c: In function ‘s_BlastFindMatrixPath’:
blast_api.c:502:39: warning: ‘%s’ directive writing up to 2 bytes into a region of size between 1 and 4096 [-Wformat-overflow=]
  502 |                  sprintf(buf_full, "%s%s%s%s", buf_path,
      |                                       ^~
  503 |                           alphabet_type, DIRDELIMSTR, matrix_name);
      |                           ~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4099) into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:484:35: warning: ‘data’ directive writing 4 bytes into a region of size between 0 and 4095 [-Wformat-overflow=]
  484 |          sprintf(buf_path_2, "%s%sdata%s", buf_path, DIRDELIMSTR, DIRDELIMSTR);
      |                                   ^~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
blast_api.c:470:35: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
  470 |          sprintf(buf_path_2, "%s%s", buf_path, DIRDELIMSTR);
      |                                   ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from ../include/algo/blast/api/blast_api.h:47,
                 from blast_api.c:38:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 4097 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_input.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_input.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_input.c,v 1.32 2008/06/09 17:28:41 madden Exp $";
      |                   ^~~~~
blast_input.c: In function ‘BLAST_GetQuerySeqLoc’:
blast_input.c:98:21: warning: ‘%ld’ directive writing between 1 and 7 bytes into a region of size 4 [-Wformat-overflow=]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                     ^~~
blast_input.c:98:20: note: directive argument in the range [-131080, 131080]
   98 |    sprintf(prefix, "%ld", (long) (*ctr/MAX_NUM_QUERIES));
      |                    ^~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from blast_input.c:34:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 8 bytes into a destination of size 4
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_format.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_format.h:45,
                 from blast_format.c:38:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_format.c: In function ‘s_MBXmlInit’:
blast_format.c:255:13: warning: variable ‘retval’ set but not used [-Wunused-but-set-variable]
  255 |     Boolean retval = FALSE;
      |             ^~~~~~
blast_format.c: In function ‘s_LoadMatrix’:
blast_format.c:673:27: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                     ~~~~~~^~~
blast_format.c:673:38: warning: array subscript has type ‘char’ [-Wchar-subscripts]
  673 |                  ss[pchars[i]][pchars[j]] = pack_matrix->scores[(i*dim)+j];
      |                                ~~~~~~^~~
At top level:
blast_format.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] = "$Id: blast_format.c,v 1.120 2012/10/10 14:07:01 fongah2 Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_mtlock.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from blast_mtlock.c:39:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_mtlock.c:35:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   35 | static char const rcsid[] =
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_options_api.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_prelim.c
blast_prelim.c: In function ‘Blast_PrelimSearchThreadRun’:
blast_prelim.c:100:9: warning: variable ‘status’ set but not used [-Wunused-but-set-variable]
  100 |    Int2 status = 0;
      |         ^~~~~~
At top level:
blast_prelim.c:34:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   34 | static char const rcsid[] = "$Id: blast_prelim.c,v 1.8 2006/05/24 21:17:50 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_returns.c
blast_returns.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_returns.c,v 1.39 2010/06/10 13:44:46 madden Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seq.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from blast_seq.c:34:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seq.c: In function ‘s_SeqLocFillSequenceBuffer’:
blast_seq.c:529:10: warning: variable ‘seq_code’ set but not used [-Wunused-but-set-variable]
  529 |    Uint1 seq_code, strand;
      |          ^~~~~~~~
At top level:
blast_seq.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: blast_seq.c,v 1.89 2008/06/09 17:29:14 madden Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_seqalign.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/blast_seqalign.h:42,
                 from blast_seqalign.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_seqalign.c: In function ‘s_HSPListToSeqAlignUngapped’:
blast_seqalign.c:343:26: warning: variable ‘hspset_cnt_old’ set but not used [-Wunused-but-set-variable]
  343 |    Int4 hsp_cnt, index2, hspset_cnt_old;
      |                          ^~~~~~~~~~~~~~
At top level:
blast_seqalign.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_seqalign.c,v 1.64 2010/02/12 20:54:54 maning Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_tabular.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/algo/blast/api/blast_tabular.h:42,
                 from blast_tabular.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
blast_tabular.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: blast_tabular.c,v 1.41 2009/06/01 14:33:38 maning Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF repeats_filter.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/repeats_filter.h:41,
                 from repeats_filter.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
repeats_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: repeats_filter.c,v 1.19 2007/12/19 21:56:48 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_multiseq.c
seqsrc_multiseq.c:33:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   33 | static char const rcsid[] = "$Id: seqsrc_multiseq.c,v 1.28 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF seqsrc_readdb.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/readdb.h:757,
                 from ../include/algo/blast/api/seqsrc_readdb.h:38,
                 from seqsrc_readdb.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
seqsrc_readdb.c: In function ‘s_ReaddbGetNextChunk’:
seqsrc_readdb.c:375:11: warning: variable ‘real_readdb_entries’ set but not used [-Wunused-but-set-variable]
  375 |     Uint4 real_readdb_entries;
      |           ^~~~~~~~~~~~~~~~~~~
At top level:
seqsrc_readdb.c:32:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   32 | static char const rcsid[] = "$Id: seqsrc_readdb.c,v 1.60 2011/05/26 20:59:45 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF twoseq_api.c
twoseq_api.c: In function ‘s_TwoSeqBasicFillOptions’:
twoseq_api.c:100:10: warning: unused variable ‘status’ [-Wunused-variable]
  100 |     Int2 status = 0;
      |          ^~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/algo/blast/api/twoseq_api.h:41,
                 from twoseq_api.c:45:
twoseq_api.c: At top level:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF dust_filter.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objloc.h:88,
                 from ../include/algo/blast/api/dust_filter.h:41,
                 from dust_filter.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
dust_filter.c: In function ‘s_GetFilteringLocations’:
dust_filter.c:171:32: warning: unused variable ‘filter_slp_rev’ [-Wunused-variable]
  171 |                   BlastSeqLoc* filter_slp_rev = NULL;
      |                                ^~~~~~~~~~~~~~
At top level:
dust_filter.c:2:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    2 | static char const rcsid[] = "$Id: dust_filter.c,v 1.12 2007/12/19 22:05:56 camacho Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF blast_message_api.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from blast_message_api.c:33:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -D_PNG -I../include -DWIN_MOTIF hspfilter_queue.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbistd.h:61,
                 from ../include/ncbithr.h:87,
                 from hspfilter_queue.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueInit’:
hspfilter_queue.c:65:24: warning: unused variable ‘q_data’ [-Wunused-variable]
   65 |    BlastHSPQueueData * q_data = data;
      |                        ^~~~~~
hspfilter_queue.c: In function ‘s_BlastHSPQueueNew’:
hspfilter_queue.c:157:24: warning: assignment to ‘BlastHSPWriterInitFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ {aka ‘int (*)(void *, struct BlastHSPResults *)’} [-Wincompatible-pointer-types]
  157 |    writer->InitFnPtr   = &s_BlastHSPQueueInit;
      |                        ^
hspfilter_queue.c:158:24: warning: assignment to ‘BlastHSPWriterFinalFn’ {aka ‘int (*)(void *, void *)’} from incompatible pointer type ‘int (*)(void *, BlastHSPResults *)’ {aka ‘int (*)(void *, struct BlastHSPResults *)’} [-Wincompatible-pointer-types]
  158 |    writer->FinalFnPtr  = &s_BlastHSPQueueFinal;
      |                        ^
hspfilter_queue.c: In function ‘BlastHSPQueueInfoNew’:
hspfilter_queue.c:189:26: warning: assignment to ‘BlastHSPWriterNewFn’ {aka ‘struct BlastHSPWriter * (*)(void *, struct BlastQueryInfo *, struct BLAST_SequenceBlk *)’} from incompatible pointer type ‘BlastHSPWriter * (*)(void *, BlastQueryInfo *)’ {aka ‘struct BlastHSPWriter * (*)(void *, struct BlastQueryInfo *)’} [-Wincompatible-pointer-types]
  189 |    writer_info->NewFnPtr = &s_BlastHSPQueueNew;
      |                          ^
At top level:
hspfilter_queue.c:36:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   36 | static char const rcsid[] =
      |                   ^~~~~
rm -f libblastapi.a
ar cru libblastapi.a blast_api.o blast_input.o blast_format.o blast_mtlock.o blast_options_api.o blast_prelim.o blast_returns.o blast_seq.o blast_seqalign.o blast_tabular.o repeats_filter.o seqsrc_multiseq.o seqsrc_readdb.o twoseq_api.o dust_filter.o blast_message_api.o hspfilter_queue.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libblastapi.a ../lib
ranlib ../lib/libblastapi.a
s390x-linux-gnu-gcc -o asntool -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include -DWIN_MOTIF  -L../shlib asntool.c asncode.c ../lib/libncbi.a -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asntool.c:64:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from asnbuild.h:70,
                 from asncode.c:52:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asncode.c: In function ‘AsnCodeGenEnumDefines’:
asncode.c:736:28: warning: format ‘%d’ expects argument of type ‘int’, but argument 4 has type ‘Nlm_Int8’ {aka ‘long int’} [-Wformat=]
  736 |   sprintf (iter->buf, "%s %d\n", AsnCodeCleanName (avtp->name, lclbuf,
      |                           ~^
      |                            |
      |                            int
      |                           %ld
  737 |     CLEAN_FOR_SLOT, iter -> acip -> maxDefineLength), avtp->intvalue);
      |                                                       ~~~~~~~~~~~~~~
      |                                                           |
      |                                                           Nlm_Int8 {aka long int}
asncode.c: In function ‘AsnCode_SETOF_base_or_user’:
asncode.c:1518:20: warning: variable ‘real_type’ set but not used [-Wunused-but-set-variable]
 1518 |    Int2            real_type;
      |                    ^~~~~~~~~
asncode.c:1517:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 1517 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘userobj_and_basetype_SETOF’:
asncode.c:2472:20: warning: variable ‘valslot’ set but not used [-Wunused-but-set-variable]
 2472 |    CharPtr         valslot;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIsReallyChoice’:
asncode.c:3201:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 3201 |    if (now_atp)
      |       ^
asncode.c: In function ‘AsnCodeFunctionWriteFuncChoiceStart’:
asncode.c:3623:20: warning: variable ‘obj_use’ set but not used [-Wunused-but-set-variable]
 3623 |    CharPtr         obj_use = which_node->obj_name;
      |                    ^~~~~~~
asncode.c: In function ‘AsnCodeIter’:
asncode.c:4238:7: warning: suggest explicit braces to avoid ambiguous ‘else’ [-Wdangling-else]
 4238 |    if (iter->atp != NULL)
      |       ^
asncode.c: In function ‘AsnCode’:
asncode.c:4317:48: warning: variable ‘objnamety’ set but not used [-Wunused-but-set-variable]
 4317 |    CharPtr objnameuc = NULL, objnamemc = NULL, objnamety = NULL;
      |                                                ^~~~~~~~~
At top level:
asncode.c:291:17: warning: ‘defbyte’ defined but not used [-Wunused-variable]
  291 | static CharPtr  defbyte = "ASNCODE_BYTEVAL_SLOT";
      |                 ^~~~~~~
asncode.c:290:17: warning: ‘defbool’ defined but not used [-Wunused-variable]
  290 | static CharPtr  defbool = "ASNCODE_BOOLVAL_SLOT";
      |                 ^~~~~~~
asncode.c:289:17: warning: ‘defreal’ defined but not used [-Wunused-variable]
  289 | static CharPtr  defreal = "ASNCODE_REALVAL_SLOT";
      |                 ^~~~~~~
asncode.c:288:17: warning: ‘defbigint’ defined but not used [-Wunused-variable]
  288 | static CharPtr  defbigint = "ASNCODE_BIGINTVAL_SLOT";
      |                 ^~~~~~~~~
asncode.c:286:17: warning: ‘defptr’ defined but not used [-Wunused-variable]
  286 | static CharPtr  defptr = "ASNCODE_PTRVAL_SLOT";
      |                 ^~~~~~
/usr/lib/gcc-cross/s390x-linux-gnu/9/../../../../s390x-linux-gnu/bin/ld: ../lib/libncbi.a(ncbifile.o): in function `Nlm_TmpNam':
./build/ncbifile.c:1211: warning: the use of `tempnam' is dangerous, better use `mkstemp'
cp -p asntool ../bin
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makedemo.unx LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" VIBLIBS= VIBFLAG= LIB50=-lpcre
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../demo/*.* .
./ln-if-absent ../regexp/test/*.* .
./ln-if-absent ../regexp/demo/*.* .
./ln-if-absent ../internal/*.* .
set: No match.
make[2]: [makedemo.unx:160: copy] Error 1 (ignored)
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
s390x-linux-gnu-gcc -o testcore -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testcore.c  -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from testcore.c:42:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
testcore.c:337:13: warning: ‘TestStrings’ defined but not used [-Wunused-function]
  337 | static void TestStrings (void)
      |             ^~~~~~~~~~~
s390x-linux-gnu-gcc -o makeset -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  makeset.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/all.h:9,
                 from makeset.c:9:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from makeset.c:9:
../include/all.h:7293: warning: "RNA_QUAL" redefined
 7293 | #define RNA_QUAL &at[2254]
      | 
../include/all.h:5823: note: this is the location of the previous definition
 5823 | #define RNA_QUAL &at[1025]
      | 
makeset.c: In function ‘Nlm_Main’:
makeset.c:27:26: warning: unused variable ‘uid’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |                          ^~~
makeset.c:27:16: warning: unused variable ‘tempseek’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |                ^~~~~~~~
makeset.c:27:7: warning: unused variable ‘seekptr’ [-Wunused-variable]
   27 |  Int4 seekptr, tempseek, uid;
      |       ^~~~~~~
s390x-linux-gnu-gcc -o getmesh -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  getmesh.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from getmesh.c:8:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o indexpub -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  indexpub.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from indexpub.c:7:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o getpub -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  getpub.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/allpub.h:9,
                 from getpub.c:7:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o testobj -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testobj.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmedli.h:80,
                 from testobj.c:8:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o seqtest -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  seqtest.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from seqtest.c:8:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o dosimple -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  dosimple.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/simple.h:63,
                 from dosimple.c:7:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o asn2ff -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2ff.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from asn2ff.c:7:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2ff.c: In function ‘Nlm_Main’:
asn2ff.c:129:10: warning: unused variable ‘good’ [-Wunused-variable]
  129 |  Boolean good = FALSE;
      |          ^~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from asn2ff.c:9:
At top level:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
asn2ff.c: In function ‘Nlm_Main’:
asn2ff.c:404:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  404 |    if (atp == atp2) {  /* top level Seq-entry */
      |       ^
asn2ff.c:351:7: warning: ‘atp1’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  351 |    if (atp == atp1) {
      |       ^
s390x-linux-gnu-gcc -o checksub -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  checksub.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from checksub.c:8:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o asndhuff -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asndhuff.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/casn.h:96,
                 from asndhuff.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndhuff.c: In function ‘do_medline’:
asndhuff.c:182:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  182 |  for (count=0; entry=CASN_NextMedlineEntry(casnh); ++count)
      |                ^~~~~
asndhuff.c: In function ‘do_sequence’:
asndhuff.c:221:16: warning: suggest parentheses around assignment used as truth value [-Wparentheses]
  221 |  for (count=0; entry=CASN_NextSeqEntry(casnh); ++count)
      |                ^~~~~
asndhuff.c:200:10: warning: unused variable ‘val’ [-Wunused-variable]
  200 |  DataVal val;
      |          ^~~
s390x-linux-gnu-gcc -o entrcmd -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  entrcmd.c -lncbiacc -lncbicdr -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from entrcmd.c:113:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
entrcmd.c: In function ‘PrintDSPMwww’:
entrcmd.c:373:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  373 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘PrintDSPNwww’:
entrcmd.c:465:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  465 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘PrintDSPPwww’:
entrcmd.c:569:21: warning: unused variable ‘lsp’ [-Wunused-variable]
  569 |     LocalLinkSetPtr lsp;
      |                     ^~~
entrcmd.c: In function ‘TermProcessing’:
entrcmd.c:1297:13: warning: variable ‘inclusive’ set but not used [-Wunused-but-set-variable]
 1297 |     Boolean inclusive;
      |             ^~~~~~~~~
entrcmd.c:1296:13: warning: variable ‘endWithTerm’ set but not used [-Wunused-but-set-variable]
 1296 |     Boolean endWithTerm = FALSE;
      |             ^~~~~~~~~~~
entrcmd.c:1295:13: warning: variable ‘beginWithTerm’ set but not used [-Wunused-but-set-variable]
 1295 |     Boolean beginWithTerm = FALSE;
      |             ^~~~~~~~~~~~~
At top level:
entrcmd.c:284:16: warning: ‘IsGenBank’ defined but not used [-Wunused-function]
  284 | static Boolean IsGenBank (SeqEntryPtr sep)
      |                ^~~~~~~~~
entrcmd.c: In function ‘RunProgram’:
entrcmd.c:1154:8: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1154 |     if (lsp != NULL && !parseOnly)
      |        ^
entrcmd.c: In function ‘Nlm_Main’:
entrcmd.c:2235:9: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2235 |         RunProgram(programStr, lsp, db, FALSE);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
entrcmd.c:2191:31: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2191 |                     temp = lsp->uids[k];
      |                            ~~~^~~~~~
entrcmd.c:1548:17: warning: ‘db’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1548 |         slp->db = db;
      |         ~~~~~~~~^~~~
entrcmd.c:1476:13: note: ‘db’ was declared here
 1476 |     DocType db;
      |             ^~
In file included from ../include/ncbi.h:65,
                 from entrcmd.c:113:
../include/ncbifile.h:121:20: warning: ‘neighborFile’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  121 | #define FileLength Nlm_FileLength
      |                    ^~~~~~~~~~~~~~
entrcmd.c:1919:13: note: ‘neighborFile’ was declared here
 1919 |     CharPtr neighborFile;
      |             ^~~~~~~~~~~~
In file included from ../include/ncbi.h:62,
                 from entrcmd.c:113:
../include/ncbistr.h:312:18: warning: ‘taxString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  312 | #define StrICmp  Nlm_StrICmp
      |                  ^~~~~~~~~~~
entrcmd.c:1917:13: note: ‘taxString’ was declared here
 1917 |     CharPtr taxString;
      |             ^~~~~~~~~
entrcmd.c:2231:9: warning: ‘termString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2231 |         TermProcessing(programStr, termString, db, FALSE);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
entrcmd.c:2137:20: warning: ‘boolString’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2137 |         if ((bsp = EntrezTLEvalXString(boolString, db, -1, NULL, NULL)) != NULL)
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o errhdr -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  errhdr.c  -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from errhdr.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from errhdr.c:1:
In function ‘strncat’,
    inlined from ‘main’ at errhdr.c:44:4:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-truncation]
  136 |   return __builtin___strncat_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
/usr/s390x-linux-gnu/include/bits/string_fortified.h:136:10: warning: ‘__builtin___strncat_chk’ specified bound 32 equals destination size [-Wstringop-overflow=]
s390x-linux-gnu-gcc -o cdscan -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  cdscan.c  -lncbiacc -lncbicdr -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cdscan.c:83:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cdscan.c:576:13: warning: ‘SeqEntryToFeat’ defined but not used [-Wunused-function]
  576 | static void SeqEntryToFeat (SeqEntryPtr sep, FILE *fp)
      |             ^~~~~~~~~~~~~~
cdscan.c:392:13: warning: ‘GenBankPubs’ defined but not used [-Wunused-function]
  392 | static void GenBankPubs (SeqEntryPtr sep, FILE * fp)
      |             ^~~~~~~~~~~
cdscan.c:133:13: warning: ‘root’ defined but not used [-Wunused-variable]
  133 | static Char root [PATH_MAX];
      |             ^~~~
s390x-linux-gnu-gcc -o findspl -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  findspl.c -lncbiacc -lncbicdr -lncbiobj -lncbi \
    -lconnssl -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from findspl.c:62:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o ncbisort -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  sortcmd.c -lncbitool -lblastcompadj \
	-lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ncbisort.h:62,
                 from sortcmd.c:64:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o fa2htgs -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  fa2htgs.c -lncbiobj -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from fa2htgs.c:30:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
fa2htgs.c: In function ‘Nlm_Main’:
fa2htgs.c:474:6: warning: ‘dsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  474 |   if (dsp != NULL && dsp->choice == 2) {
      |      ^
fa2htgs.c:448:16: note: ‘dsp’ was declared here
  448 |   DeltaSeqPtr  dsp;
      |                ^~~
s390x-linux-gnu-gcc -o testval -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  testval.c -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from testval.c:9:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
testval.c: In function ‘Nlm_Main’:
testval.c:186:7: warning: ‘atp2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    if (atp == atp2)    /* top level Seq-entry */
      |       ^
testval.c:183:17: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  183 |   while ((atp = AsnReadId(aip, amp, atp)) != NULL)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o vecscreen -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  vecscreen.c  -lncbitool \
	-lblastcompadj -lncbiobj -lncbi -lm 
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from vecscreen.c:57:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/sqnutils.h:51,
                 from vecscreen.c:68:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o gil2bin -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  gil2bin.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm 
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gil2bin.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gil2bin.c: In function ‘Nlm_Main’:
gil2bin.c:90:5: warning: this ‘else’ clause does not guard... [-Wmisleading-indentation]
   90 |     else
      |     ^~~~
gil2bin.c:93:2: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘else’
   93 |  return 0;
      |  ^~~~~~
s390x-linux-gnu-gcc -o asn2xml -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2xml.c -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from asn2xml.c:21:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o debruijn -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  debruijn.c -lblast -lblastcompadj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
debruijn.c: In function ‘Nlm_Main’:
debruijn.c:72:12: warning: pointer targets in assignment from ‘Nlm_CharPtr’ {aka ‘char *’} to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign]
   72 |   alphabet = myargs[1].strvalue;
      |            ^
debruijn.c:80:14: warning: pointer targets in passing argument 1 of ‘strlen’ differ in signedness [-Wpointer-sign]
   80 |   k = strlen(alphabet);
      |              ^~~~~~~~
      |              |
      |              Nlm_Uint1 * {aka unsigned char *}
In file included from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/s390x-linux-gnu/include/string.h:384:35: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
  384 | extern size_t strlen (const char *__s)
      |                       ~~~~~~~~~~~~^~~
debruijn.c:89:10: warning: pointer targets in assignment from ‘char *’ to ‘Nlm_Uint1 *’ {aka ‘unsigned char *’} differ in signedness [-Wpointer-sign]
   89 |   output = (char *) malloc(outputsize + 1);
      |          ^
debruijn.c:106:8: warning: pointer targets in passing argument 1 of ‘puts’ differ in signedness [-Wpointer-sign]
  106 |   puts(output);
      |        ^~~~~~
      |        |
      |        Nlm_Uint1 * {aka unsigned char *}
In file included from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from debruijn.c:38:
/usr/s390x-linux-gnu/include/stdio.h:632:30: note: expected ‘const char *’ but argument is of type ‘Nlm_Uint1 *’ {aka ‘unsigned char *’}
  632 | extern int puts (const char *__s);
      |                  ~~~~~~~~~~~~^~~
debruijn.c:109:1: warning: control reaches end of non-void function [-Wreturn-type]
  109 | }
      | ^
At top level:
debruijn.c:29:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
   29 | static char const rcsid[] = "$Id: debruijn.c,v 1.4 2004/02/09 21:24:59 ucko Exp $";
      |                   ^~~~~
s390x-linux-gnu-gcc -o asn2idx -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  asn2idx.c -lncbitool -lblastcompadj -lncbiobj \
	-lncbi -lm 
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2idx.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o sortbyquote -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  sortbyquote.c -lncbiobj -lncbi -lm 
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from sortbyquote.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o subfuse -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  subfuse.c -lncbiobj -lncbi -lm 
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from subfuse.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o test_regexp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcretest.c -lpcre
s390x-linux-gnu-gcc -o demo_regexp -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcredemo.c -lpcre
s390x-linux-gnu-gcc -o demo_regexp_grep -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib  pcregrep.c -lpcre
pcregrep.c: In function ‘main’:
pcregrep.c:515:64: warning: ‘%d’ directive writing between 1 and 10 bytes into a region of size 8 [-Wformat-overflow=]
  515 |     if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j);
      |                                                                ^~
pcregrep.c:515:55: note: directive argument in the range [0, 2147483647]
  515 |     if (pattern_count == 1) s[0] = 0; else sprintf(s, " number %d", j);
      |                                                       ^~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from pcregrep.c:9:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 10 and 19 bytes into a destination of size 16
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
/usr/bin/make -C build -f makenet.unx LCL=lnx CC="s390x-linux-gnu-gcc" LDFLAGS1="-g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib" RAN="ranlib" OTHERLIBS="-lm" VIBLIBS="-lXm -lXmu -lXt -lX11 " VIBFLAG="-DWIN_MOTIF" GNUTLS_INCLUDE=-DHAVE_LIBGNUTLS NCBI_LINKINGLIBDIR="../shlib" \
    CFLAGS1="-c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2" THREAD_OBJ="ncbithr.o" \
    THREAD_OTHERLIBS="-lpthread" \
    NETENTREZVERSION="2.02c2ASN1SPEC6" BLIB31=libvibnet.a \
    OGLLIBS= VIBLIBS= VIB="Psequin sbtedit udv ddv taxblast idfetch asn2gb tbl2asn gene2xml entrez2 gbseqget asn2all asn2asn asn2fsa asn2xml asndisc asnmacro asnval cleanasn insdseqget nps2gps spidey trna2sap trna2tbl Cn3D"
make[2]: Entering directory '/<<PKGBUILDDIR>>/build'
./ln-if-absent ../connect/test/*.c .
./ln-if-absent ../network/entrez/client/*.h ../include
./ln-if-absent ../network/entrez/client/*.c .
./ln-if-absent ../network/medarch/client/*.h ../include
./ln-if-absent ../network/medarch/client/*.c .
./ln-if-absent ../network/taxonomy/client/*.h ../include
set: No match.
make[2]: [makenet.unx:480: copy] Error 1 (ignored)
./ln-if-absent ../network/taxonomy/client/*.c .
set: No match.
make[2]: [makenet.unx:481: copy] Error 1 (ignored)
./ln-if-absent ../network/taxon1/common/*.h ../include
./ln-if-absent ../network/taxon1/common/*.c .
./ln-if-absent ../network/taxon1/taxon2/*.h ../include
./ln-if-absent ../network/taxon1/taxon2/*.c .
./ln-if-absent ../network/id0arch/client/*.h ../include
set: No match.
make[2]: [makenet.unx:486: copy] Error 1 (ignored)
./ln-if-absent ../network/id0arch/client/*.c .
set: No match.
make[2]: [makenet.unx:487: copy] Error 1 (ignored)
./ln-if-absent ../network/id1arch/*.h ../include
./ln-if-absent ../network/id1arch/*.c .
./ln-if-absent ../network/id2arch/*.h ../include
./ln-if-absent ../network/id2arch/*.c .
./ln-if-absent ../network/spell/client/*.h ../include
./ln-if-absent ../network/spell/client/*.c .
./ln-if-absent ../network/suggest/client/*.h ../include
./ln-if-absent ../network/suggest/client/*.c .
./ln-if-absent ../network/blast3/client/*.h ../include
./ln-if-absent ../network/blast3/client/*.c .
./ln-if-absent ../tools/taxblast.h ../include
./ln-if-absent ../tools/taxblast.c .
./ln-if-absent /*.c .
set: No match.
make[2]: [makenet.unx:500: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.c .
set: No match.
make[2]: [makenet.unx:501: copy] Error 1 (ignored)
./ln-if-absent ../internal/misc/*.h ../include
set: No match.
make[2]: [makenet.unx:502: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.c .
set: No match.
make[2]: [makenet.unx:503: copy] Error 1 (ignored)
./ln-if-absent ../internal/ssparse/*.h ../include
set: No match.
make[2]: [makenet.unx:504: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.c .
set: No match.
make[2]: [makenet.unx:505: copy] Error 1 (ignored)
./ln-if-absent ../internal/libparsn/*.h ../include
set: No match.
make[2]: [makenet.unx:506: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.c .
set: No match.
make[2]: [makenet.unx:507: copy] Error 1 (ignored)
./ln-if-absent ../internal/smart/smartnet/*.h ../include
set: No match.
make[2]: [makenet.unx:508: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.c .
set: No match.
make[2]: [makenet.unx:509: copy] Error 1 (ignored)
./ln-if-absent ../internal/www/*.h ../include
set: No match.
make[2]: [makenet.unx:510: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.c .
set: No match.
make[2]: [makenet.unx:511: copy] Error 1 (ignored)
./ln-if-absent ../internal/query/*.h ../include
set: No match.
make[2]: [makenet.unx:512: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.c .
set: No match.
make[2]: [makenet.unx:513: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/ctlib/*.h ../include
set: No match.
make[2]: [makenet.unx:514: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.c .
set: No match.
make[2]: [makenet.unx:515: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/oslib/*.h ../include
set: No match.
make[2]: [makenet.unx:516: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.c .
set: No match.
make[2]: [makenet.unx:517: copy] Error 1 (ignored)
./ln-if-absent ../network/sybutils/idloadlib/*.h ../include
set: No match.
make[2]: [makenet.unx:518: copy] Error 1 (ignored)
./ln-if-absent ../network/nsclilib/*.h ../include
./ln-if-absent ../network/nsclilib/*.c .
./ln-if-absent ../network/vibnet/*.c .
./ln-if-absent ../network/vibnet/*.h ../include
./ln-if-absent ../cdromlib/*.h ../include
./ln-if-absent ../network/wwwblast/Src/*.c .
./ln-if-absent ../cdromlib/accentr.c .
./ln-if-absent ../cdromlib/accutils.c .
./ln-if-absent ../sequin/*.* .
./ln-if-absent ../demo/entrez.c .
./ln-if-absent ../demo/seqget.c .
./ln-if-absent ../demo/entrcmd.c .
./ln-if-absent ../demo/batch.c .
./ln-if-absent ../demo/qbatch.c .
./ln-if-absent ../demo/elecpcr.c .
./ln-if-absent ../demo/asn2fast.c .
./ln-if-absent ../demo/asn2asn.c .
./ln-if-absent ../demo/cleanasn.c .
./ln-if-absent ../demo/cspeedtest.c .
./ln-if-absent ../demo/sqn2agp.c .
./ln-if-absent ../demo/sugint.c .
./ln-if-absent ../demo/fetchent.c .
./ln-if-absent ../demo/udvmain.c .
./ln-if-absent ../demo/rtestval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asn2ff.c .
./ln-if-absent ../demo/asn2gb.c .
./ln-if-absent ../demo/asn2fsa.c .
./ln-if-absent ../demo/asn2all.c .
./ln-if-absent ../demo/gene2xml.c .
./ln-if-absent ../demo/asnval.c .
./ln-if-absent ../demo/asndisc.c .
./ln-if-absent ../demo/asnbarval.c .
./ln-if-absent ../demo/aceread_tst.c .
./ln-if-absent ../demo/asnmacro.c .
./ln-if-absent ../demo/asnstrip.c .
./ln-if-absent ../demo/tbl2asn.c .
./ln-if-absent ../demo/raw2delt.c .
./ln-if-absent ../demo/flint.c .
./ln-if-absent ../demo/xlint.c .
./ln-if-absent ../demo/diffshift.c .
./ln-if-absent ../demo/gbseqget.c .
./ln-if-absent ../demo/insdseqget.c .
./ln-if-absent ../demo/nps2gps.c .
./ln-if-absent ../demo/testent2.c .
./ln-if-absent ../demo/trna2sap.c .
./ln-if-absent ../demo/trna2tbl.c .
./ln-if-absent ../demo/entrez2.c .
./ln-if-absent ../demo/condense.c .
./ln-if-absent ../demo/spideymain.c .
./ln-if-absent ../demo/dotmain.c .
./ln-if-absent ../demo/ingenmain.c .
./ln-if-absent ../demo/bl2seq.c .
./ln-if-absent ../demo/blastall.c .
./ln-if-absent ../demo/blast_driver.c .
./ln-if-absent ../demo/src_chk.c .
./ln-if-absent ../demo/tbl_chk.c .
./ln-if-absent ../demo/export_cmt.c .
./ln-if-absent ../internal/parser/flat2asn.c .
make[2]: [makenet.unx:577: copy] Error 1 (ignored)
./ln-if-absent ../demo/srchnt.c ../demo/srchaa.c ../demo/mts.c ../demo/sigme.c ../demo/dst.c ../demo/ccp.c ../demo/epi.c ../demo/twop.c ../demo/cnsrt.c ../demo/cnsgn.c ../demo/ccpv.c ../demo/dustv.c ../demo/epiv.c ../demo/sigmev.c ../demo/twopv.c ../demo/cnsrtv.c ../demo/cnsgnv.c ../demo/searchv.c .
./ln-if-absent ../network/entrez/server/*.* .
set: No match.
make[2]: [makenet.unx:579: copy] Error 1 (ignored)
./ln-if-absent ../network/suggest/server/*.* .
chmod -R ug+rw,o+r .
echo Waiting...go
Waiting...go
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \""  ni_lib_.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ni_lib_.c:76:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_debug.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_debug.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_service.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ni_service.c:125:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ni_service.c: In function ‘s_GenericGetService’:
ni_service.c:201:19: warning: unused variable ‘c’ [-Wunused-variable]
  201 |     CONNECTOR     c;
      |                   ^
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ni_error.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from ../include/ni_error.h:76,
                 from ni_error.c:72:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
rm -f libnetcli.a
ar cru libnetcli.a ni_lib_.o ni_debug.o ni_service.o ni_error.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetcli.a ../lib
ranlib ../lib/libnetcli.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from netentr.c:161:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netentr.c: In function ‘s_NetEntTLEvalCount’:
netentr.c:798:5: warning: "/*" within comment [-Wcomment]
  798 |     /*MsgSetReadTimeout(Entrez_ni, 60);*/
      |      
netentr.c: In function ‘s_NetDocSumListGet’:
netentr.c:856:18: warning: variable ‘amp’ set but not used [-Wunused-but-set-variable]
  856 |     AsnModulePtr amp;
      |                  ^~~
netentr.c: In function ‘s_NetTermListByTerm’:
netentr.c:1212:9: warning: variable ‘terms_to_read’ set but not used [-Wunused-but-set-variable]
 1212 |     int terms_to_read;
      |         ^~~~~~~~~~~~~
netentr.c:1200:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1200 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘s_NetTermListByPage’:
netentr.c:1343:14: warning: unused variable ‘asnout’ [-Wunused-variable]
 1343 |     AsnIoPtr asnout = Entrez_asnout;
      |              ^~~~~~
netentr.c: In function ‘NetEntTLEval’:
netentr.c:675:12: warning: ‘lsp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  675 |     return lsp;
      |            ^~~
netentr.c: In function ‘NetEntTLEvalCount’:
netentr.c:800:8: warning: ‘atp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  800 |     if (atp == ENTREZ_BACK_eval_count)
      |        ^
netentr.c:782:16: note: ‘atp’ was declared here
  782 |     AsnTypePtr atp;
      |                ^~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netlib.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from netlib.c:82:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netlib.c: In function ‘BoolExprAsnWrite’:
netlib.c:307:16: warning: unused variable ‘n’ [-Wunused-variable]
  307 |     static int n = 0;
      |                ^
At top level:
netlib.c:307:16: warning: ‘n’ defined but not used [-Wunused-variable]
netlib.c:96:16: warning: ‘loaded’ defined but not used [-Wunused-variable]
   96 | static Boolean loaded = FALSE;
      |                ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objneten.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/asnneten.h:9,
                 from objneten.c:86:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objneten.c: In function ‘NetEntAsnLoad’:
objneten.c:106:5: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
  106 |     if (loaded)
      |     ^~
objneten.c:108:9: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
  108 |         loaded = TRUE;
      |         ^~~~~~
objneten.c: In function ‘EntrezNeighborTextAsnRead’:
objneten.c:2938:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2938 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘ChildLinkAsnRead’:
objneten.c:3148:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3148 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘EntrezHierarchyAsnRead’:
objneten.c:3442:15: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3442 |   AsnReadFunc func;
      |               ^~~~
objneten.c: In function ‘EntrezBlastreqAsnRead’:
objneten.c:3705:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3705 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3704:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3704 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘EntrezExtraInfoAsnRead’:
objneten.c:3911:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3911 |    AsnReadFunc func;
      |                ^~~~
objneten.c:3910:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3910 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterArticlesAsnRead’:
objneten.c:4262:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4262 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4261:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4261 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘ClusterRespAsnRead’:
objneten.c:4455:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4455 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateConstraintsAsnRead’:
objneten.c:4622:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4622 |    AsnReadFunc func;
      |                ^~~~
objneten.c: In function ‘DateVectorAsnRead’:
objneten.c:4785:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4785 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4784:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4784 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetByFidAsnRead’:
objneten.c:4963:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4963 |    AsnReadFunc func;
      |                ^~~~
objneten.c:4962:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4962 |    Boolean isError = FALSE;
      |            ^~~~~~~
objneten.c: In function ‘GetFeatIdsAsnRead’:
objneten.c:5133:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 5133 |    AsnReadFunc func;
      |                ^~~~
objneten.c:5132:12: warning: unused variable ‘isError’ [-Wunused-variable]
 5132 |    Boolean isError = FALSE;
      |            ^~~~~~~
rm -f libnetentr.a
ar cru libnetentr.a netentr.o netlib.o objneten.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetentr.a ../lib
ranlib ../lib/libnetentr.a
./ln-if-absent accentr.c Naccentr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NETENT_ Naccentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Naccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Naccentr.c: In function ‘EntrezDocSumListGet’:
Naccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Naccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Naccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Naccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
Naccentr.c: In function ‘EntrezMedlineEntryGet’:
Naccentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Naccentr.c: In function ‘EntrezSeqEntryGet’:
Naccentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Naccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiNacc.a
ar cru libncbiNacc.a Naccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiNacc.a ../lib
ranlib ../lib/libncbiNacc.a
./ln-if-absent accentr.c Caccentr.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -D_NET_AND_CD_ Caccentr.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
Caccentr.c:357:93: warning: missing braces around initializer [-Wmissing-braces]
  357 | Uint1 AdaptiveDocSumMatrix[MAX_CHUNK_IN_ADAPTIVE_MATRIX+1][MAX_SECS_IN_ADAPTIVE_MATRIX+1] = {
      |                                                                                             ^
  358 |   8,  6,  3,  3,
      |   {            }
  359 |   8,  6,  3,  3,
      |   {            }
  360 |   8,  6,  3,  3,
      |   {            }
  361 |   8,  6,  3,  3,
      |   {            }
  362 |   9,  7,  4,  3,
      |   {            }
  363 |   9,  8,  5,  3,
      |   {            }
  364 |  10,  9,  5,  3,
      |  {             }
  365 |  10, 10,  5,  3,
      |  {             }
  366 |  11, 10,  5,  3,
      |  {             }
  367 |  11, 11,  5,  3,
      |  {             }
  368 |  12, 11,  5,  3,
      |  {             }
  369 |  12, 11,  5,  3,
      |  {             }
  370 |  12, 11,  5,  3
      |  {
  371 | };
      | }
Caccentr.c: In function ‘EntrezDocSumListGet’:
Caccentr.c:1409:14: warning: variable ‘actual’ set but not used [-Wunused-but-set-variable]
 1409 |   Int2       actual;
      |              ^~~~~~
Caccentr.c: In function ‘EntrezGIForSeqIdFunc’:
Caccentr.c:3283:9: warning: this ‘if’ clause does not guard... [-Wmisleading-indentation]
 3283 |         if (! gi) return OM_MSG_RET_OK;
      |         ^~
Caccentr.c:3285:5: note: ...this statement, but the latter is misleadingly indented as if it were guarded by the ‘if’
 3285 |     sip2 = ValNodeNew(NULL);
      |     ^~~~
Caccentr.c: In function ‘EntrezMedlineEntryGet’:
Caccentr.c:1978:58: warning: ‘)’ directive writing 1 byte into a region of size between 0 and 10 [-Wformat-overflow=]
 1978 |         sprintf(errorString, "(EntrezMedlineEntryGet: %ld)",(long)uid);
      |                                                          ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 27 and 37 bytes into a destination of size 35
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
Caccentr.c: In function ‘EntrezSeqEntryGet’:
Caccentr.c:2383:55: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 2383 |         sprintf(errorString, "(EntrezSeqEntryGet: %ld)",(long)uid);
      |                                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/accentr.h:125,
                 from Caccentr.c:297:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 23 and 33 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbiCacc.a
ar cru libncbiCacc.a Caccentr.o accutils.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiCacc.a ../lib
ranlib ../lib/libncbiCacc.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netcnfg.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netcnfg.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netcnfg.c: In function ‘ShowNetConfigForm’:
netcnfg.c:319:23: warning: variable ‘ppt1’ set but not used [-Wunused-but-set-variable]
  319 |   PrompT        ppt0, ppt1;
      |                       ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" trmlst.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from trmlst.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trmlst.c: In function ‘FetchFromTermList’:
trmlst.c:1048:16: warning: variable ‘numRead’ set but not used [-Wunused-but-set-variable]
 1048 |   Int2         numRead;
      |                ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" docsum.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
docsum.c: In function ‘ImportDocSumForm’:
docsum.c:2298:21: warning: unused variable ‘sephead’ [-Wunused-variable]
 2298 |   SeqEntryPtr       sephead = NULL;
      |                     ^~~~~~~
docsum.c:2296:21: warning: unused variable ‘is_na’ [-Wunused-variable]
 2296 |   Boolean           is_na = TRUE;
      |                     ^~~~~
docsum.c:2290:21: warning: unused variable ‘choice’ [-Wunused-variable]
 2290 |   Uint1             choice = 0;
      |                     ^~~~~~
docsum.c: In function ‘SaveDocsumProject’:
docsum.c:3042:16: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
 3042 |   SummFormPtr  sfp;
      |                ^~~
docsum.c: In function ‘LaunchStructureViewer’:
docsum.c:4192:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 4192 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
docsum.c:439:15: warning: ‘checkmark’ defined but not used [-Wunused-variable]
  439 | static Uint1  checkmark [] = {
      |               ^~~~~~~~~
docsum.c: In function ‘SetDefaultFailureMessage’:
docsum.c:687:48: warning: ‘ in ’ directive writing 4 bytes into a region of size between 3 and 42 [-Wformat-overflow=]
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                                                ^~~~
docsum.c:687:21: note: assuming directive output of 3 bytes
  687 |       sprintf (tmp, "%sProblem with sequence %s in %s database", prefix, buf, dbname);
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 78) into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
docsum.c: In function ‘FetchLocalBioseq’:
docsum.c:1223:6: warning: ‘str’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1223 |   if (str == NULL) return failed;
      |      ^
docsum.c: In function ‘LaunchStructureViewer.isra.0’:
docsum.c:4191:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 4091 [-Wformat-overflow=]
 4191 |   sprintf (cmmd, "Cn3D %s &", path);
      |                        ^~     ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from docsum.c:252:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 8 and 4103 bytes into a destination of size 4096
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libvibnet.a
ar cru libvibnet.a netcnfg.o trmlst.o docsum.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libvibnet.a ../lib
ranlib ../lib/libvibnet.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objtax1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objtax1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objtax1.c: In function ‘Taxon1ReqFree’:
objtax1.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:92:12: warning: unused variable ‘isError’ [-Wunused-variable]
   92 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1InfoAsnRead’:
objtax1.c:502:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  502 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:501:12: warning: unused variable ‘isError’ [-Wunused-variable]
  501 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1ErrorAsnRead’:
objtax1.c:1131:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1131 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1130:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1130 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1NameAsnRead’:
objtax1.c:1296:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1296 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1295:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1295 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon1DataAsnRead’:
objtax1.c:1482:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1482 |    AsnReadFunc func;
      |                ^~~~
objtax1.c:1481:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1481 |    Boolean isError = FALSE;
      |            ^~~~~~~
objtax1.c: In function ‘Taxon2DataAsnRead’:
objtax1.c:1670:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1670 |    AsnReadFunc func;
      |                ^~~~
objtax1.c: In function ‘Taxon1ReqAsnRead’:
objtax1.c:284:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  284 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objtax1.c: In function ‘Taxon1RespAsnRead’:
objtax1.c:920:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  920 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/utilpub.h:4,
                 from taxutil.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxutil.c: In function ‘taxname_match’:
taxutil.c:66:24: warning: unused variable ‘taxstr’ [-Wunused-variable]
   66 |    CharPtr             taxstr = NULL;
      |                        ^~~~~~
taxutil.c: In function ‘get_lineage’:
taxutil.c:140:28: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  140 |   return Nlm_StringSave(onp->lineage);
      |                         ~~~^~~~~~~~~
taxutil.c: In function ‘get_gcode’:
taxutil.c:160:23: warning: ‘onp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  160 |    gclp->genomic = onp->gcode;
      |                    ~~~^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o tc2dproc.o -DTAXSERVICE tc2proc.c
tc2proc.c: In function ‘getIdByOrgRef’:
tc2proc.c:407:17: warning: unused variable ‘om_flag’ [-Wunused-variable]
  407 |         Boolean om_flag= FALSE;
      |                 ^~~~~~~
tc2proc.c: In function ‘bldLineage’:
tc2proc.c:1095:10: warning: unused variable ‘rank’ [-Wunused-variable]
 1095 |     Int2 rank= 0;
      |          ^~~~
tc2proc.c: In function ‘storedTaxId’:
tc2proc.c:2114:17: warning: unused variable ‘object_id’ [-Wunused-variable]
 2114 |     ObjectIdPtr object_id;
      |                 ^~~~~~~~~
tc2proc.c: In function ‘tax1e_needUpdate’:
tc2proc.c:2181:13: warning: unused variable ‘hit_name’ [-Wunused-variable]
 2181 |     CharPtr hit_name;
      |             ^~~~~~~~
tc2proc.c:2180:13: warning: unused variable ‘need_search_name’ [-Wunused-variable]
 2180 |     Boolean need_search_name= TRUE;
      |             ^~~~~~~~~~~~~~~~
tc2proc.c:2179:9: warning: unused variable ‘is_species’ [-Wunused-variable]
 2179 |     int is_species;
      |         ^~~~~~~~~~
tc2proc.c:2176:19: warning: unused variable ‘res’ [-Wunused-variable]
 2176 |     Taxon1DataPtr res;
      |                   ^~~
At top level:
tc2proc.c:403:13: warning: ‘getIdByOrgRef’ defined but not used [-Wunused-function]
  403 | static Int4 getIdByOrgRef(CharPtr sname, OrgNamePtr orNm)
      |             ^~~~~~~~~~~~~
tc2proc.c: In function ‘mergeOrgMod’:
tc2proc.c:1611:22: warning: ‘lst’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1611 |             lst->next= dst= OrgModNew();
      |             ~~~~~~~~~^~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -c -o txcdproc.o -DTAXSERVICE txcdproc.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from txcdproc.c:116:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" parttree.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/txclient.h:73,
                 from parttree.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
parttree.c: In function ‘tax_ptree_addSubtree’:
parttree.c:392:13: warning: unused variable ‘need_remove’ [-Wunused-variable]
  392 |     Boolean need_remove= FALSE;
      |             ^~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxcs.c
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" taxblast.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast.c: In function ‘TXBHtmlReportInternal’:
taxblast.c:1359:37: warning: variable ‘linlines’ set but not used [-Wunused-but-set-variable]
 1359 |     Int2 numtaxa, numorgs, numhits, linlines, longname;
      |                                     ^~~~~~~~
taxblast.c: In function ‘RDTaxLookupReset’:
taxblast.c:2050:1: warning: control reaches end of non-void function [-Wreturn-type]
 2050 | }
      | ^
At top level:
taxblast.c:1967:13: warning: ‘getTotalTaxIdCount’ defined but not used [-Wunused-function]
 1967 | static Int4 getTotalTaxIdCount(TreeCursorPtr cursor)
      |             ^~~~~~~~~~~~~~~~~~
taxblast.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast.c,v 6.31 2015/07/06 19:25:47 madden Exp $";
      |                   ^~~~~
taxblast.c: In function ‘TXBGetTargetGi.isra.0’:
taxblast.c:504:12: warning: ‘gi’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  504 |     return gi;
      |            ^~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from taxblast.c:161:
In function ‘strncpy’,
    inlined from ‘TXBHtmlReportInternal’ at taxblast.c:1491:17,
    inlined from ‘TXBHtmlReport’ at taxblast.c:1803:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 128 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
rm -f libncbitxc2.a
ar cru libncbitxc2.a objtax1.o taxutil.o tc2dproc.o txcdproc.o parttree.o taxcs.o taxblast.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbitxc2.a ../lib
ranlib ../lib/libncbitxc2.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1gen.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from id1gen.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1gen.c: In function ‘ID1serverRequestFree’:
id1gen.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverMaxcomplexAsnRead’:
id1gen.c:348:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  348 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:347:12: warning: unused variable ‘isError’ [-Wunused-variable]
  347 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqHistAsnRead’:
id1gen.c:530:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  530 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:529:12: warning: unused variable ‘isError’ [-Wunused-variable]
  529 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1SeqEntryInfoAsnRead’:
id1gen.c:979:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  979 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:978:12: warning: unused variable ‘isError’ [-Wunused-variable]
  978 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1blobInfoAsnRead’:
id1gen.c:1147:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1147 |    AsnReadFunc func;
      |                ^~~~
id1gen.c:1146:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1146 |    Boolean isError = FALSE;
      |            ^~~~~~~
id1gen.c: In function ‘ID1serverDebugAsnRead’:
id1gen.c:1368:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1368 |    AsnReadFunc func;
      |                ^~~~
id1gen.c: In function ‘ID1serverBackAsnRead’:
id1gen.c:811:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  811 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
id1gen.c: In function ‘ID1serverRequestAsnRead’:
id1gen.c:186:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  186 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" id1arch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
id1arch.c: In function ‘ID1ArchSeqEntryGet’:
id1arch.c:173:7: warning: unused variable ‘retval’ [-Wunused-variable]
  173 |  Int4 retval = 0;
      |       ^~~~~~
id1arch.c: In function ‘ID1ArchGIGet’:
id1arch.c:486:10: warning: unused variable ‘retval’ [-Wunused-variable]
  486 |     Int4 retval = 0;
      |          ^~~~~~
id1arch.c: In function ‘SeqHistPrintTable’:
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
  553 |                                         sprintf(repl_date,"%0.2d/%0.2d/%0.4d",
      |                                                           ^~~~~~~~~~~~~~~~~~~
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:553:59: warning: '0' flag ignored with precision and ‘%d’ gnu_printf format [-Wformat=]
id1arch.c:563:47: warning: spurious trailing ‘%’ in format [-Wformat=]
  563 |                         fprintf(fp,"%-20d%-20s%",old_gi,repl_date);
      |                                               ^
id1arch.c:558:65: warning: ‘__builtin___sprintf_chk’ writing a terminating nul past the end of the destination [-Wformat-overflow=]
  558 |                                         sprintf(repl_date,"%-20s",shp->replace_date->str);
      |                                                                 ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from id1arch.c:31:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 21 or more bytes into a destination of size 20
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" accid1.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objmgr.h:51,
                 from ../include/seqmgr.h:48,
                 from accid1.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
accid1.c: In function ‘s_ID1BioseqFetchFunc’:
accid1.c:262:9: warning: unused variable ‘retcode’ [-Wunused-variable]
  262 |  Int2   retcode=0;
      |         ^~~~~~~
rm -f libncbiid1.a
ar cru libncbiid1.a id1gen.o id1arch.o accid1.o 
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbiid1.a ../lib
ranlib ../lib/libncbiid1.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" objblst3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objblst3.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objblst3.c: In function ‘BlastSearchAsnRead’:
objblst3.c:91:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
   91 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:90:12: warning: unused variable ‘isError’ [-Wunused-variable]
   90 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastRequestFree’:
objblst3.c:287:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  287 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:337:12: warning: unused variable ‘isError’ [-Wunused-variable]
  337 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff2_cutoff2Free’:
objblst3.c:999:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
  999 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1027:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1027 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘Cutoff2_cutoff2AsnRead’:
objblst3.c:1422:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1422 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffAsnRead’:
objblst3.c:1788:12: warning: unused variable ‘isError’ [-Wunused-variable]
 1788 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘Cutoff_cutoffFree’:
objblst3.c:1871:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
 1871 |    Pointer pnt;
      |            ^~~
objblst3.c: In function ‘BlastMatrixAsnRead’:
objblst3.c:1936:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 1936 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoAsnRead’:
objblst3.c:2153:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2153 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2152:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2152 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastMaskAsnRead’:
objblst3.c:2357:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2357 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastKABlkAsnRead’:
objblst3.c:2517:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2517 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2516:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2516 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastErrorAsnRead’:
objblst3.c:2697:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2697 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:2696:12: warning: unused variable ‘isError’ [-Wunused-variable]
 2696 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPhialignAsnRead’:
objblst3.c:2861:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 2861 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastDbinfoGetAsnRead’:
objblst3.c:3022:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3022 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3021:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3021 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSeqIdAsnRead’:
objblst3.c:3187:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3187 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3186:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3186 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastSequenceAsnRead’:
objblst3.c:3364:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3364 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3363:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3363 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastPartsAsnRead’:
objblst3.c:3532:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3532 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastQueuedAsnRead’:
objblst3.c:3694:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3694 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3693:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3693 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastProgressAsnRead’:
objblst3.c:3846:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 3846 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3845:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3845 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastDeflineAsnRead’:
objblst3.c:4000:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4000 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:3999:12: warning: unused variable ‘isError’ [-Wunused-variable]
 3999 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘BlastVersionAsnRead’:
objblst3.c:4168:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4168 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4167:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4167 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastHitAsnRead’:
objblst3.c:4335:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4335 |    AsnReadFunc func;
      |                ^~~~
objblst3.c:4334:12: warning: unused variable ‘isError’ [-Wunused-variable]
 4334 |    Boolean isError = FALSE;
      |            ^~~~~~~
objblst3.c: In function ‘MegaBlastResultsAsnRead’:
objblst3.c:4546:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
 4546 |    AsnReadFunc func;
      |                ^~~~
objblst3.c: In function ‘BlastRequestAsnRead’:
objblst3.c:430:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  430 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastResponseAsnRead’:
objblst3.c:791:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  791 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c: In function ‘BlastParametersAsnRead’:
objblst3.c:1474:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1474 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1421:10: note: ‘choice’ was declared here
 1421 |    Uint1 choice;
      |          ^~~~~~
objblst3.c:1840:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1840 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objblst3.c:1787:10: note: ‘choice’ was declared here
 1787 |    Uint1 choice;
      |          ^~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" netblap3.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from netblap3.c:359:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
netblap3.c: In function ‘BlastNetBioseqFetchFunc’:
netblap3.c:1835:16: warning: variable ‘omdp’ set but not used [-Wunused-but-set-variable]
 1835 |  OMUserDataPtr omdp;
      |                ^~~~
netblap3.c: In function ‘MegaBlastSeqLocNetCore’:
netblap3.c:2049:8: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 2049 |  Uint2 entityID = 0;
      |        ^~~~~~~~
In file included from ../include/netblap3.h:135,
                 from netblap3.c:364:
netblap3.c: At top level:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
netblap3.c:452:1: warning: ‘BlastResetOldHook’ defined but not used [-Wunused-function]
  452 | BlastResetOldHook(void)
      | ^~~~~~~~~~~~~~~~~
netblap3.c:445:1: warning: ‘BlastGetErrorStatus’ defined but not used [-Wunused-function]
  445 | BlastGetErrorStatus(void)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:438:1: warning: ‘BlastSetErrorStatus’ defined but not used [-Wunused-function]
  438 | BlastSetErrorStatus(Boolean status)
      | ^~~~~~~~~~~~~~~~~~~
netblap3.c:430:1: warning: ‘BlastSetErrorHook’ defined but not used [-Wunused-function]
  430 | BlastSetErrorHook(void)
      | ^~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from netblap3.c:364:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
netblap3.c: In function ‘BlastNetMatrixToBlastMatrix’:
netblap3.c:1212:35: warning: ‘index2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1212 |  if (index1 != blast_matrix->rows || index2 != blast_matrix->columns)
      |      ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
netblap3.c: In function ‘SubmitRequest’:
netblap3.c:1763:18: warning: ‘bllist’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1763 |     bllist->next = blresp;
      |     ~~~~~~~~~~~~~^~~~~~~~
netblap3.c:1698:19: note: ‘bllist’ was declared here
 1698 |  BlastResponsePtr bllist, blresp, head;
      |                   ^~~~~~
netblap3.c: In function ‘TraditionalBlastReportEngine’:
netblap3.c:2570:11: warning: ‘next_seqalign’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2570 |     while (seqalign) {
      |           ^
rm -f libnetblast.a
ar cru libnetblast.a objblst3.o netblap3.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libnetblast.a ../lib
ranlib ../lib/libnetblast.a
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -DNLM_OBJ_INCL=\"mapmla.h\" objmla.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from objmla.c:1:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
objmla.c: In function ‘MlaRequestFree’:
objmla.c:49:12: warning: variable ‘pnt’ set but not used [-Wunused-but-set-variable]
   49 |    Pointer pnt;
      |            ^~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:96:12: warning: unused variable ‘isError’ [-Wunused-variable]
   96 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgAsnRead’:
objmla.c:447:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  447 |    AsnReadFunc func;
      |                ^~~~
objmla.c:446:12: warning: unused variable ‘isError’ [-Wunused-variable]
  446 |    Boolean isError = FALSE;
      |            ^~~~~~~
objmla.c: In function ‘TitleMsgListAsnRead’:
objmla.c:612:16: warning: variable ‘func’ set but not used [-Wunused-but-set-variable]
  612 |    AsnReadFunc func;
      |                ^~~~
objmla.c: In function ‘MlaRequestAsnRead’:
objmla.c:249:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  249 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
objmla.c: In function ‘MlaBackAsnRead’:
objmla.c:902:16: warning: ‘choice’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  902 |    anp->choice = choice;
      |    ~~~~~~~~~~~~^~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medarch.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/ni_types.h:84,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medarch.c:758:8: warning: ‘s_MedArchPubSetEntryGetUid’ defined but not used [-Wunused-function]
  758 | /*FCN*/s_MedArchPubSetEntryGetUid (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c:710:8: warning: ‘s_MedArchPubSetEntryGetPmId’ defined but not used [-Wunused-function]
  710 | /*FCN*/s_MedArchPubSetEntryGetPmId (
      |        ^~~~~~~~~~~~~~~~~~~~~~~~~~~
medarch.c: In function ‘MedArchPubSetCreate’:
medarch.c:1693:9: warning: ‘pubSetEAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1693 |         MedlineEntryAsnWrite (lastmep, aip, pubSetEAtp);
      |         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/ni_types.h:85,
                 from ../include/ncbinet.h:84,
                 from medarch.c:122:
../include/asn.h:495:27: warning: ‘pubSetAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  495 | #define AsnEndStruct(x,y) AsnCloseStruct(x, y, NULL)
      |                           ^~~~~~~~~~~~~~
medarch.c:1625:16: note: ‘pubSetAtp’ was declared here
 1625 |     AsnTypePtr pubSetAtp;
      |                ^~~~~~~~~
medarch.c:1655:5: warning: ‘startAtp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 1655 |     AsnWrite (aip, startAtp, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" medutil.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/medutil.h:79,
                 from medutil.c:58:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
medutil.c: In function ‘FixPubEquiv’:
medutil.c:1134:16: warning: variable ‘got’ set but not used [-Wunused-but-set-variable]
 1134 |     Boolean    got;
      |                ^~~
rm -f libncbimla.a
ar cru libncbimla.a objmla.o medarch.o medutil.o
ar: `u' modifier ignored since `D' is the default (see `U')
cp -p libncbimla.a ../lib
ranlib ../lib/libncbimla.a
s390x-linux-gnu-gcc -o Psequin -I. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sequin1.c sequin2.c sequin3.c sequin4.c sequin5.c sequin6.c sequin7.c sequin8.c sequin9.c sequin10.c sequinx.c \
-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \
-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lconnssl -lncbi \
  -lm
sequin1.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   46 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sequin1.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   47 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin1.c: In function ‘SQACT_GuessWhatIAm’:
sequin1.c:4884:76: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 4884 |       if ((Int4)(*cp) < 0 || (Int4)(*cp) >= 256 || ! isprint ((Int4)(*cp)) && ! isspace ((Int4)(*cp)))
      |                                                                            ^
sequin1.c: In function ‘FinishAlignmentRead’:
sequin1.c:5196:16: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable]
 5196 |   Boolean      rsult;
      |                ^~~~~
sequin1.c: In function ‘BioseqViewFormMenus’:
sequin1.c:8357:18: warning: variable ‘mssgext’ set but not used [-Wunused-but-set-variable]
 8357 |   Int2           mssgext;
      |                  ^~~~~~~
sequin1.c: In function ‘DeleteSelectedFeatureOrDescriptor’:
sequin1.c:8894:19: warning: variable ‘itemtype’ set but not used [-Wunused-but-set-variable]
 8894 |   Uint2           itemtype;
      |                   ^~~~~~~~
sequin1.c:8893:19: warning: variable ‘itemID’ set but not used [-Wunused-but-set-variable]
 8893 |   Uint4           itemID;
      |                   ^~~~~~
sequin1.c:8891:19: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 8891 |   Uint2           entityID;
      |                   ^~~~~~~~
sequin1.c: In function ‘IsolationSourceOk’:
sequin1.c:14815:11: warning: unused variable ‘specific_bad_fmt’ [-Wunused-variable]
14815 |   CharPtr specific_bad_fmt = "isolation-source should have a value like seawater, soil, etc. '%s' is not a valid isolation-source.";
      |           ^~~~~~~~~~~~~~~~
sequin1.c:14811:11: warning: unused variable ‘is_ambiguous’ [-Wunused-variable]
14811 |   Boolean is_ambiguous = FALSE;
      |           ^~~~~~~~~~~~
sequin1.c: In function ‘WizardTrackerFree’:
sequin1.c:15809:20: warning: variable ‘sep_next’ set but not used [-Wunused-but-set-variable]
15809 |   SeqEntryPtr sep, sep_next;
      |                    ^~~~~~~~
sequin1.c: In function ‘AddCodingRegionFromWizard’:
sequin1.c:15881:33: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
15881 |   SeqEntryPtr        old, psep, nsep;
      |                                 ^~~~
sequin1.c: In function ‘SetWizardTrackerBaseSrcQuals’:
sequin1.c:16157:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
16157 |       switch (wiz->virus_class) {
      |       ^~~~~~
sequin1.c:16204:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
16204 |       switch (wiz->cultured_kingdom) {
      |       ^~~~~~
sequin1.c:16140:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
16140 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘SetWizardTrackerExtraSrcQuals’:
sequin1.c:16328:7: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
16328 |       switch (wiz->virus_class) {
      |       ^~~~~~
sequin1.c:16354:7: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
16354 |       switch (wiz->cultured_kingdom) {
      |       ^~~~~~
sequin1.c:16321:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
16321 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘AddWizardFeatureCallback’:
sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_None’ not handled in switch [-Wswitch]
16687 |   switch (wiz->virus_feat) {
      |   ^~~~~~
sequin1.c:16687:3: warning: enumeration value ‘eVirusFeat_CDS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘GetWGSNote’:
sequin1.c:17010:11: warning: unused variable ‘fmt’ [-Wunused-variable]
17010 |   CharPtr fmt = "[%s][WGS wizard]";
      |           ^~~
sequin1.c: In function ‘FinishWizardAndLaunchSequin’:
sequin1.c:17052:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
17052 |     switch (wiz->wizard_type) {
      |     ^~~~~~
sequin1.c: In function ‘HaveUniqueCombinationOfQuals’:
sequin1.c:17401:15: warning: variable ‘num_quals’ set but not used [-Wunused-but-set-variable]
17401 |   Int4        num_quals;
      |               ^~~~~~~~~
sequin1.c: In function ‘GetWizardQualifierProblems’:
sequin1.c:20626:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
20626 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:20626:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘VirusQualsOk’:
sequin1.c:20931:5: warning: enumeration value ‘eVirusClass_Unknown’ not handled in switch [-Wswitch]
20931 |     switch (wiz->virus_class) {
      |     ^~~~~~
sequin1.c: In function ‘CulturedSamplesOk’:
sequin1.c:21036:5: warning: enumeration value ‘eCulturedKingdom_Unknown’ not handled in switch [-Wswitch]
21036 |     switch (wiz->cultured_kingdom) {
      |     ^~~~~~
sequin1.c: In function ‘WizardSrcQualsOk’:
sequin1.c:21347:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
21347 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c: In function ‘CreateWizardSrcQualsForm’:
sequin1.c:22401:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
22401 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:22401:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘CheckFeatureQualsUniqueness’:
sequin1.c:22719:8: warning: variable ‘num_rows’ set but not used [-Wunused-but-set-variable]
22719 |   Int4 num_rows, row_num;
      |        ^~~~~~~~
sequin1.c: In function ‘WizardFeatureQualsOk’:
sequin1.c:22810:11: warning: variable ‘num_features’ set but not used [-Wunused-but-set-variable]
22810 |   Int4    num_features;
      |           ^~~~~~~~~~~~
sequin1.c: In function ‘TabTableToMultiModTabTable’:
sequin1.c:23178:16: warning: unused variable ‘bsp’ [-Wunused-variable]
23178 |   BioseqPtr    bsp = NULL;
      |                ^~~
sequin1.c: In function ‘MultiModTableToTabTable’:
sequin1.c:23257:21: warning: variable ‘fq’ set but not used [-Wunused-but-set-variable]
23257 |   WizardFeatQualPtr fq;
      |                     ^~
sequin1.c: In function ‘ShowAllFeatureQualSequences’:
sequin1.c:23777:15: warning: variable ‘show_all’ set but not used [-Wunused-but-set-variable]
23777 |   Boolean     show_all = TRUE;
      |               ^~~~~~~~
sequin1.c: In function ‘TabTableLineFromFeature’:
sequin1.c:24725:14: warning: unused variable ‘vals’ [-Wunused-variable]
24725 |   ValNodePtr vals = NULL, q_vnp;
      |              ^~~~
sequin1.c: In function ‘PregenerateFeatures’:
sequin1.c:24775:22: warning: unused variable ‘problems’ [-Wunused-variable]
24775 |   CharPtr       PNTR problems = NULL;
      |                      ^~~~~~~~
sequin1.c: In function ‘SetQualForSequencesFromWizardList’:
sequin1.c:26026:20: warning: unused variable ‘rval’ [-Wunused-variable]
26026 |   Boolean          rval = FALSE;
      |                    ^~~~
sequin1.c: In function ‘CollectWizardSetType’:
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
27538 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:27538:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘SequencingMethodToDialog’:
sequin1.c:28361:27: warning: variable ‘info’ set but not used [-Wunused-but-set-variable]
28361 |   SequencingMethodInfoPtr info;
      |                           ^~~~
sequin1.c: In function ‘CollectWizardSourceType’:
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
28943 |     switch (wiz->wizard_type) {
      |     ^~~~~~
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:28943:5: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘HaveWizardSourceType’:
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
28976 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:28976:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardSourceTypeForm’:
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
29038 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_DLoop’ not handled in switch [-Wswitch]
sequin1.c:29038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘PopulateAAPopup’:
sequin1.c:29856:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
29856 |   Uint1            first;
      |                    ^~~~~
sequin1.c: In function ‘CountAmbiProc’:
sequin1.c:31452:11: warning: unused variable ‘normal’ [-Wunused-variable]
31452 |   Int4    normal = 0;
      |           ^~~~~~
sequin1.c: In function ‘OkToTrimAmbiguous’:
sequin1.c:31765:25: warning: variable ‘p2’ set but not used [-Wunused-but-set-variable]
31765 |   GrouP                 p2 = NULL;
      |                         ^~
sequin1.c:31764:25: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable]
31764 |   PrompT                p1, title = NULL, pr = NULL, pt = NULL;
      |                         ^~
sequin1.c: In function ‘WGSVectorScreen’:
sequin1.c:32753:15: warning: unused variable ‘reasons’ [-Wunused-variable]
32753 |   CharPtr     reasons[] = {"Low Quality", "Vector Contamination", "Low Quality and Vector Contamination"};
      |               ^~~~~~~
sequin1.c: In function ‘WGSSequenceAdjustment’:
sequin1.c:32916:31: warning: too many arguments for format [-Wformat-extra-args]
32916 |             fprintf (lip->fp, "%s (too short)\n", a->id, "Low Quality");
      |                               ^~~~~~~~~~~~~~~~~~
sequin1.c:32841:15: warning: unused variable ‘quit_problems’ [-Wunused-variable]
32841 |   CharPtr     quit_problems = NULL;
      |               ^~~~~~~~~~~~~
sequin1.c:32839:15: warning: unused variable ‘max_dist’ [-Wunused-variable]
32839 |   Int4        max_dist = 20;
      |               ^~~~~~~~
sequin1.c: In function ‘SetFastaText’:
sequin1.c:33423:15: warning: unused variable ‘intro’ [-Wunused-variable]
33423 |   CharPtr     intro = NULL;
      |               ^~~~~
sequin1.c: In function ‘ImportSeqCallback’:
sequin1.c:33567:11: warning: variable ‘x’ set but not used [-Wunused-but-set-variable]
33567 |   Int4    x = 0;
      |           ^
sequin1.c: In function ‘ExportWizardFASTA’:
sequin1.c:33590:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
33590 |   Boolean       rval = FALSE;
      |                 ^~~~
sequin1.c: In function ‘ImportWizardFASTA’:
sequin1.c:33624:15: warning: unused variable ‘changed’ [-Wunused-variable]
33624 |   Boolean     changed = FALSE;
      |               ^~~~~~~
sequin1.c: In function ‘WizardFASTAFwd’:
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
33916 |   switch (frm->wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_UnculturedSamples’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Viruses’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_CulturedSamples’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_IGS’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_Microsatellite’ not handled in switch [-Wswitch]
sequin1.c:33916:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardFASTABack’:
sequin1.c:34038:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
34038 |   switch (frm->wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:34038:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
sequin1.c: In function ‘WizardFastaHelpBtn’:
sequin1.c:34089:3: warning: enumeration value ‘eWizardType_NormalDialogs’ not handled in switch [-Wswitch]
34089 |   switch (wiz->wizard_type) {
      |   ^~~~~~
sequin1.c:34089:3: warning: enumeration value ‘eWizardType_WGS’ not handled in switch [-Wswitch]
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
sequin1.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from ../include/accutils.h:119,
                 from sequin1.c:78:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from sequin1.c:84:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:135,
                 from ../include/ingenwin.h:62,
                 from sequin1.c:89:
../include/objblst3.h:180:35: warning: ‘Cutoff2_cutoff2Free’ declared ‘static’ but never defined [-Wunused-function]
  180 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2Free PROTO ((Cutoff2_cutoff2Ptr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objblst3.h:181:35: warning: ‘Cutoff2_cutoff2AsnRead’ declared ‘static’ but never defined [-Wunused-function]
  181 | static Cutoff2_cutoff2Ptr LIBCALL Cutoff2_cutoff2AsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:182:24: warning: ‘Cutoff2_cutoff2AsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  182 | static Boolean LIBCALL Cutoff2_cutoff2AsnWrite PROTO (( Cutoff2_cutoff2Ptr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:199:33: warning: ‘Cutoff_cutoffFree’ declared ‘static’ but never defined [-Wunused-function]
  199 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffFree PROTO ((Cutoff_cutoffPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objblst3.h:200:33: warning: ‘Cutoff_cutoffAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  200 | static Cutoff_cutoffPtr LIBCALL Cutoff_cutoffAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objblst3.h:201:24: warning: ‘Cutoff_cutoffAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  201 | static Boolean LIBCALL Cutoff_cutoffAsnWrite PROTO (( Cutoff_cutoffPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin1.c:92:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
In file included from sequin1.c:117:
../include/objmime.h:145:29: warning: ‘Data_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  145 | static Data_dataPtr LIBCALL Data_dataFree PROTO ((Data_dataPtr ));
      |                             ^~~~~~~~~~~~~
../include/objmime.h:146:29: warning: ‘Data_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  146 | static Data_dataPtr LIBCALL Data_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                             ^~~~~~~~~~~~~~~~
../include/objmime.h:147:24: warning: ‘Data_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  147 | static Boolean LIBCALL Data_dataAsnWrite PROTO (( Data_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~
../include/objmime.h:285:47: warning: ‘SeqAlignData_seq_align_dataFree’ declared ‘static’ but never defined [-Wunused-function]
  285 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataFree PROTO ((SeqAlignData_seq_align_dataPtr ));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:286:47: warning: ‘SeqAlignData_seq_align_dataAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  286 | static SeqAlignData_seq_align_dataPtr LIBCALL SeqAlignData_seq_align_dataAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                               ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmime.h:287:24: warning: ‘SeqAlignData_seq_align_dataAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Boolean LIBCALL SeqAlignData_seq_align_dataAsnWrite PROTO (( SeqAlignData_seq_align_dataPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c: In function ‘LaunchedGoogleEarth’:
sequin1.c:1504:11: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1504 |           system (cmmd);
      |           ^~~~~~~~~~~~~
sequin1.c: In function ‘Entrez2QueryProc’:
sequin1.c:9715:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 9715 |   system ("entrez2 &");
      |   ^~~~~~~~~~~~~~~~~~~~
At top level:
sequin1.c:33848:16: warning: ‘IsSequencingMethodOkForTSA’ defined but not used [-Wunused-function]
33848 | static Boolean IsSequencingMethodOkForTSA (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:33103:16: warning: ‘s_TSAFastaExample’ defined but not used [-Wunused-variable]
33103 | static CharPtr s_TSAFastaExample[] = {
      |                ^~~~~~~~~~~~~~~~~
sequin1.c:32740:13: warning: ‘WGSVectorScreen’ defined but not used [-Wunused-function]
32740 | static void WGSVectorScreen (WizardTrackerPtr wiz, ValNodeBlockPtr block, Int4 min_length, Int4 max_dist)
      |             ^~~~~~~~~~~~~~~
sequin1.c:32059:13: warning: ‘TrimTSABases’ defined but not used [-Wunused-function]
32059 | static void TrimTSABases (SeqEntryPtr PNTR sequences)
      |             ^~~~~~~~~~~~
sequin1.c:29180:16: warning: ‘WizardAssemblyDescriptionForm’ defined but not used [-Wunused-function]
29180 | static Boolean WizardAssemblyDescriptionForm (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:29123:16: warning: ‘WizardCommentForm’ defined but not used [-Wunused-function]
29123 | static Boolean WizardCommentForm (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~~~~~
sequin1.c:21709:16: warning: ‘s_TSASrcTblHelpMsgs’ defined but not used [-Wunused-variable]
21709 | static CharPtr s_TSASrcTblHelpMsgs[] = {
      |                ^~~~~~~~~~~~~~~~~~~
sequin1.c:21228:16: warning: ‘TSASrcQualsOk’ defined but not used [-Wunused-function]
21228 | static Boolean TSASrcQualsOk (WizardTrackerPtr wiz)
      |                ^~~~~~~~~~~~~
sequin1.c:20543:21: warning: ‘GetTSAQualifiersProblems’ defined but not used [-Wunused-function]
20543 | static CharPtr PNTR GetTSAQualifiersProblems (WizardTrackerPtr wiz)
      |                     ^~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c:10760:13: warning: ‘ObjMgrReport’ defined but not used [-Wunused-function]
10760 | static void ObjMgrReport (IteM i)
      |             ^~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from ../include/ingenwin.h:62,
                 from sequin1.c:89:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
sequin1.c: In function ‘LaunchedGoogleEarth.constprop’:
sequin1.c:1503:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
 1503 |           sprintf (cmmd, "open %s", path);
      |                                ^~   ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin1.c: In function ‘SubtoolDoneFuncEx’:
sequin1.c:2000:5: warning: ‘bfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 2000 |     SeqMgrClearFeatureIndexes (bfp->input_entityID, NULL);
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:133,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin1.c:53:
sequin1.c: In function ‘BioseqViewFormMenus’:
../include/vibforms.h:522:25: warning: ‘mssgupd_idx’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  522 | #define SetFormMenuItem Nlm_SetFormMenuItem
      |                         ^~~~~~~~~~~~~~~~~~~
sequin1.c:8356:27: note: ‘mssgupd_idx’ was declared here
 8356 |   Int2           mssgupd, mssgupd_idx;
      |                           ^~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin2.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin2.c: In function ‘ValidateModifierTableSequenceIDs’:
sequin2.c:2847:16: warning: variable ‘deleted_rows’ set but not used [-Wunused-but-set-variable]
 2847 |   Int4         deleted_rows;
      |                ^~~~~~~~~~~~
sequin2.c: In function ‘ImportFastaDialog’:
sequin2.c:4587:17: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 4587 |   SeqEntryPtr   sep, new_sep_list, new_sep, test_sep;
      |                 ^~~
sequin2.c: In function ‘ExportOneRawSequence’:
sequin2.c:4859:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
 4859 |   Char        buffer [EXPORT_PAGE_WIDTH + 1];
      |               ^~~~~~
sequin2.c: In function ‘ExportOneDeltaBioseq’:
sequin2.c:4958:15: warning: variable ‘buffer’ set but not used [-Wunused-but-set-variable]
 4958 |   Char        buffer [EXPORT_PAGE_WIDTH + 1];
      |               ^~~~~~
sequin2.c: In function ‘FindBioseqWithValue’:
sequin2.c:7807:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
 7807 |   BioseqPtr     bsp = NULL;
      |                 ^~~
sequin2.c: In function ‘CollectNucleotideProteinAssociations’:
sequin2.c:9174:73: warning: variable ‘p_msg’ set but not used [-Wunused-but-set-variable]
 9174 |   GrouP                 h, title_grp, all_gene_grp, all_prot_grp, k, c, p_msg;
      |                                                                         ^~~~~
sequin2.c: In function ‘AddCDSToSeqEntry’:
sequin2.c:9713:37: warning: unused variable ‘scope’ [-Wunused-variable]
 9713 |   SeqEntryPtr        setsep = NULL, scope, old_scope;
      |                                     ^~~~~
sequin2.c: In function ‘GetModNameStartFromEqLoc’:
sequin2.c:11770:11: warning: variable ‘match_quote’ set but not used [-Wunused-but-set-variable]
11770 |   Char    match_quote;
      |           ^~~~~~~~~~~
sequin2.c: In function ‘GetValueFromTitle’:
sequin2.c:12334:15: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable]
12334 |   Boolean     is_nontext;
      |               ^~~~~~~~~~
sequin2.c: In function ‘PrepareSourceAssistantTableData’:
sequin2.c:13585:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable]
13585 |   Int4               column_width, num_columns = 0;
      |                                    ^~~~~~~~~~~
sequin2.c: In function ‘SetOrganismText’:
sequin2.c:13787:30: warning: variable ‘changed_val’ set but not used [-Wunused-but-set-variable]
13787 |   Boolean                    changed_val = FALSE;
      |                              ^~~~~~~~~~~
sequin2.c: In function ‘ApplyRowListToIDAndTitleEdit’:
sequin2.c:15438:32: warning: variable ‘next_org’ set but not used [-Wunused-but-set-variable]
15438 |   CharPtr    org_loc, org_end, next_org;
      |                                ^~~~~~~~
sequin2.c: In function ‘EditOrgModColumn’:
sequin2.c:16349:26: warning: variable ‘row_list’ set but not used [-Wunused-but-set-variable]
16349 |   ValNodePtr             row_list = NULL;
      |                          ^~~~~~~~
sequin2.c: In function ‘ApplyOrgModColumn’:
sequin2.c:17198:11: warning: variable ‘is_nontext’ set but not used [-Wunused-but-set-variable]
17198 |   Boolean is_nontext;
      |           ^~~~~~~~~~
sequin2.c: In function ‘PrepareSequenceAssistantTableData’:
sequin2.c:18172:36: warning: variable ‘num_columns’ set but not used [-Wunused-but-set-variable]
18172 |   Int4               column_width, num_columns = 0;
      |                                    ^~~~~~~~~~~
sequin2.c: In function ‘UpdateIdAndTitleEditDialog’:
sequin2.c:19591:50: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable]
19591 |   Boolean    has_dups, has_missing, has_bracket, has_space, has_unrec_mods = FALSE;
      |                                                  ^~~~~~~~~
sequin2.c: In function ‘SetIDAndTitleEditDialogErrorColumn’:
sequin2.c:19741:74: warning: variable ‘has_space’ set but not used [-Wunused-but-set-variable]
19741 |   Boolean    has_dups, has_missing, has_bracket, has_unrec_mods = FALSE, has_space;
      |                                                                          ^~~~~~~~~
sequin2.c: In function ‘GetDiffDlgCoord’:
sequin2.c:20911:19: warning: variable ‘start_col’ set but not used [-Wunused-but-set-variable]
20911 |   Int4 start_row, start_col;
      |                   ^~~~~~~~~
sequin2.c:20911:8: warning: variable ‘start_row’ set but not used [-Wunused-but-set-variable]
20911 |   Int4 start_row, start_col;
      |        ^~~~~~~~~
sequin2.c: In function ‘DownloadAndDisplay’:
sequin2.c:26575:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable]
26575 |   CharPtr       dbname;
      |                 ^~~~~~
sequin2.c: In function ‘DownloadProc’:
sequin2.c:26725:17: warning: variable ‘dbname’ set but not used [-Wunused-but-set-variable]
26725 |   CharPtr       dbname;
      |                 ^~~~~~
sequin2.c: In function ‘LoadSecondaryAccessionNumbersPlusHistFromFile’:
sequin2.c:27908:17: warning: variable ‘need_seqid’ set but not used [-Wunused-but-set-variable]
27908 |   Boolean       need_seqid;
      |                 ^~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from sequin2.c:66:
sequin2.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin2.c:26330:13: warning: ‘GetRawBsps’ defined but not used [-Wunused-function]
26330 | static void GetRawBsps (BioseqPtr bsp, Pointer userdata)
      |             ^~~~~~~~~~
sequin2.c:24919:1: warning: ‘SequenceAssistantValidateSegments’ defined but not used [-Wunused-function]
24919 | SequenceAssistantValidateSegments
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:10685:17: warning: ‘GetSeqIdFromSeqEntryPtr’ defined but not used [-Wunused-function]
10685 | static SeqIdPtr GetSeqIdFromSeqEntryPtr (SeqEntryPtr sep)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:8106:20: warning: ‘FindSeqEntryWithTranscriptID’ defined but not used [-Wunused-function]
 8106 | static SeqEntryPtr FindSeqEntryWithTranscriptID (SeqEntryPtr sep, CharPtr transcript_id)
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin2.c:6863:13: warning: ‘ParseDeflineToBiop’ defined but not used [-Wunused-function]
 6863 | static void ParseDeflineToBiop(CharPtr defline, BioSourcePtr biop)
      |             ^~~~~~~~~~~~~~~~~~
sequin2.c:3922:1: warning: ‘ReadOneSegSet’ defined but not used [-Wunused-function]
 3922 | ReadOneSegSet
      | ^~~~~~~~~~~~~
sequin2.c: In function ‘InsertMostUsedFeatureValNodes’:
sequin2.c:28184:22: warning: ‘new_item’ may be used uninitialized in this function [-Wmaybe-uninitialized]
28184 |       new_item->next = old_list;
      |       ~~~~~~~~~~~~~~~^~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin3.c: In function ‘FarToNearProc’:
sequin3.c:542:12: warning: variable ‘olddelta’ set but not used [-Wunused-but-set-variable]
  542 |   Pointer  olddelta;
      |            ^~~~~~~~
sequin3.c: In function ‘FixLocus’:
sequin3.c:1019:15: warning: variable ‘embl_code’ set but not used [-Wunused-but-set-variable]
 1019 |  CharPtr ptr, embl_code;
      |               ^~~~~~~~~
sequin3.c: In function ‘RemoveGeneXrefsOnBioseqs’:
sequin3.c:2237:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 2237 |   Int2               count;
      |                      ^~~~~
sequin3.c: In function ‘MakeCDS’:
sequin3.c:7040:27: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
 7040 |   SeqEntryPtr       psep, nsep, old, topsep;
      |                           ^~~~
sequin3.c: In function ‘ConvertOneCDSToMiscFeat’:
sequin3.c:9217:26: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
 9217 |       || must_have_stops && !HasInternalStops (sfp))
      |          ~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c: In function ‘SuppressGenesOnFeatures’:
sequin3.c:11108:20: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
11108 |   ButtoN           b;
      |                    ^
sequin3.c: In function ‘CheckForExistingMolInfo’:
sequin3.c:12443:17: warning: variable ‘bsp’ set but not used [-Wunused-but-set-variable]
12443 |   BioseqPtr     bsp;
      |                 ^~~
sequin3.c: In function ‘RemoveNthCDS’:
sequin3.c:19694:17: warning: variable ‘segCount’ set but not used [-Wunused-but-set-variable]
19694 |   Int4          segCount;
      |                 ^~~~~~~~
sequin3.c: In function ‘InstantiateGapFeatCallback’:
sequin3.c:20956:15: warning: variable ‘fuzz’ set but not used [-Wunused-but-set-variable]
20956 |   IntFuzzPtr  fuzz;
      |               ^~~~
sequin3.c: In function ‘GlobalDisableStrainForwarding’:
sequin3.c:23530:14: warning: unused variable ‘lip’ [-Wunused-variable]
23530 |   LogInfoPtr lip;
      |              ^~~
In file included from ../include/tax3api.h:51,
                 from sequin3.c:71:
sequin3.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin3.c:73:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin3.c:23279:16: warning: ‘SummarizeFieldDiff’ defined but not used [-Wunused-function]
23279 | static CharPtr SummarizeFieldDiff (FieldDiffPtr diff)
      |                ^~~~~~~~~~~~~~~~~~
sequin3.c:22333:13: warning: ‘TestSegregateByList’ defined but not used [-Wunused-function]
22333 | static void TestSegregateByList (IteM i)
      |             ^~~~~~~~~~~~~~~~~~~
sequin3.c:21921:13: warning: ‘LabelFungalRNAs’ defined but not used [-Wunused-function]
21921 | static void LabelFungalRNAs (IteM i)
      |             ^~~~~~~~~~~~~~~
sequin3.c:21906:13: warning: ‘WriteAccessionsCallback’ defined but not used [-Wunused-function]
21906 | static void WriteAccessionsCallback (BioseqPtr bsp, Pointer data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:21398:13: warning: ‘ModernizeGenes’ defined but not used [-Wunused-function]
21398 | static void ModernizeGenes (IteM i)
      |             ^~~~~~~~~~~~~~
sequin3.c:21371:13: warning: ‘ModernizeRNAs’ defined but not used [-Wunused-function]
21371 | static void ModernizeRNAs (IteM i)
      |             ^~~~~~~~~~~~~
sequin3.c:21344:13: warning: ‘ModernizePCRs’ defined but not used [-Wunused-function]
21344 | static void ModernizePCRs (IteM i)
      |             ^~~~~~~~~~~~~
sequin3.c:21234:13: warning: ‘TestTax3B’ defined but not used [-Wunused-function]
21234 | static void TestTax3B (IteM i)
      |             ^~~~~~~~~
sequin3.c:21228:13: warning: ‘TestTax3A’ defined but not used [-Wunused-function]
21228 | static void TestTax3A (IteM i)
      |             ^~~~~~~~~
sequin3.c:21095:13: warning: ‘NewAligmentViewer’ defined but not used [-Wunused-function]
21095 | static void NewAligmentViewer (IteM i)
      |             ^~~~~~~~~~~~~~~~~
sequin3.c:21064:13: warning: ‘AddAllDbxrefsMenuItem’ defined but not used [-Wunused-function]
21064 | static void AddAllDbxrefsMenuItem (IteM i)
      |             ^~~~~~~~~~~~~~~~~~~~~
sequin3.c:17134:16: warning: ‘s_NextQualifies’ defined but not used [-Wunused-function]
17134 | static Boolean s_NextQualifies (SeqFeatPtr sfp,
      |                ^~~~~~~~~~~~~~~
sequin3.c:14836:25: warning: ‘FsaStreamProc’ defined but not used [-Wunused-function]
14836 | static void LIBCALLBACK FsaStreamProc (
      |                         ^~~~~~~~~~~~~
sequin3.c:13705:13: warning: ‘PrepareTaxListProc’ defined but not used [-Wunused-function]
13705 | static void PrepareTaxListProc (IteM i)
      |             ^~~~~~~~~~~~~~~~~~
sequin3.c:11155:19: warning: ‘CopyGeneRef’ defined but not used [-Wunused-function]
11155 | static GeneRefPtr CopyGeneRef (GeneRefPtr srcGrp)
      |                   ^~~~~~~~~~~
sequin3.c:5388:13: warning: ‘InstantiateAssemblyGapFeats’ defined but not used [-Wunused-function]
 5388 | static void InstantiateAssemblyGapFeats (BioseqPtr bsp)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:5310:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function]
 5310 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:5268:13: warning: ‘linkEvValues’ defined but not used [-Wunused-variable]
 5268 | static Int4 linkEvValues [] = {
      |             ^~~~~~~~~~~~
sequin3.c:5253:16: warning: ‘linkEvStrings’ defined but not used [-Wunused-variable]
 5253 | static CharPtr linkEvStrings [] = {
      |                ^~~~~~~~~~~~~
sequin3.c:5237:13: warning: ‘gapTypeValues’ defined but not used [-Wunused-variable]
 5237 | static Int4 gapTypeValues [] = {
      |             ^~~~~~~~~~~~~
sequin3.c:5220:16: warning: ‘gapTypeStrings’ defined but not used [-Wunused-variable]
 5220 | static CharPtr gapTypeStrings [] = {
      |                ^~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
sequin3.c: In function ‘AddMissingFieldsFromBioSample’:
../include/vibdefns.h:318:18: warning: ‘summ’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  318 | #define CheckBox Nlm_CheckBox
      |                  ^~~~~~~~~~~~
sequin3.c:23379:14: note: ‘summ’ was declared here
23379 |   CharPtr    summ, prev = NULL;
      |              ^~~~
sequin3.c: In function ‘MakeBioSampleUpdateTable’:
sequin3.c:22980:30: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
22980 |   FieldDiffPtr sdiff, ddiff, diff;
      |                              ^~~~
sequin3.c: In function ‘CompareWithBioSampleEx’:
sequin3.c:23104:30: warning: ‘diff’ may be used uninitialized in this function [-Wmaybe-uninitialized]
23104 |   FieldDiffPtr sdiff, ddiff, diff;
      |                              ^~~~
sequin3.c: In function ‘DoFixupSegSet’:
sequin3.c:1126:18: warning: ‘%s’ directive writing up to 127 bytes into a region of size 32 [-Wformat-overflow=]
 1126 |   sprintf (str, "%sS%s", prefix, digs);
      |                  ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 144 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin3.c:1226:22: warning: ‘%s’ directive writing up to 127 bytes into a region of size 28 [-Wformat-overflow=]
 1226 |   sprintf (str, "SEG_%sS", prefix);
      |                      ^~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin3.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 133 bytes into a destination of size 32
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin4.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin4.c: In function ‘SplitSegmentedFeatsOnOneSet’:
sequin4.c:1621:20: warning: variable ‘set_sep’ set but not used [-Wunused-but-set-variable]
 1621 |   SeqEntryPtr sep, set_sep;
      |                    ^~~~~~~
sequin4.c: In function ‘RemoveOneSegSet’:
sequin4.c:2295:30: warning: variable ‘seg_bssp’ set but not used [-Wunused-but-set-variable]
 2295 |   BioseqSetPtr seg_nuc_prot, seg_bssp;
      |                              ^~~~~~~~
sequin4.c: In function ‘NewUpdateSeqAlign’:
sequin4.c:3142:20: warning: variable ‘bssp’ set but not used [-Wunused-but-set-variable]
 3142 |   BioseqSetPtr     bssp;
      |                    ^~~~
sequin4.c: In function ‘LaunchOrfViewer’:
sequin4.c:7256:9: warning: variable ‘qu’ set but not used [-Wunused-but-set-variable]
 7256 |  ButtoN qu, b1;
      |         ^~
sequin4.c: In function ‘MRnaFromCdsCallback’:
sequin4.c:7624:17: warning: variable ‘entityID’ set but not used [-Wunused-but-set-variable]
 7624 |   Uint2         entityID;
      |                 ^~~~~~~~
sequin4.c: In function ‘FindNonACGT’:
sequin4.c:8773:21: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8773 |   Int4              len;
      |                     ^~~
sequin4.c: In function ‘GetPubStatus’:
sequin4.c:10801:14: warning: variable ‘csp’ set but not used [-Wunused-but-set-variable]
10801 |   CitSubPtr  csp;
      |              ^~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sequin4.c:72:
sequin4.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin4.c:14157:13: warning: ‘CleanupTruncateByProtAlignForm’ defined but not used [-Wunused-function]
14157 | static void CleanupTruncateByProtAlignForm (GraphiC g, VoidPtr data)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:13699:25: warning: ‘FeatToDeltaSeq’ defined but not used [-Wunused-function]
13699 | static Int2 LIBCALLBACK FeatToDeltaSeq (Pointer data)
      |                         ^~~~~~~~~~~~~~
sequin4.c:13659:16: warning: ‘ListRawSequencesInAlignments’ defined but not used [-Wunused-function]
13659 | static Boolean ListRawSequencesInAlignments (GatherContextPtr gcp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:9889:13: warning: ‘PubConstraintClearText’ defined but not used [-Wunused-function]
 9889 | static void PubConstraintClearText (PubConstraintPtr pcp)
      |             ^~~~~~~~~~~~~~~~~~~~~~
sequin4.c:8853:18: warning: ‘RevStringUpper’ defined but not used [-Wunused-function]
 8853 | static void NEAR RevStringUpper (CharPtr str)
      |                  ^~~~~~~~~~~~~~
sequin4.c:8504:13: warning: ‘MakeGeneXref’ defined but not used [-Wunused-function]
 8504 | static void MakeGeneXref (SeqFeatPtr sfpr, SeqFeatPtr sfpg)
      |             ^~~~~~~~~~~~
sequin4.c:6747:13: warning: ‘AddOrfListToDoc’ defined but not used [-Wunused-function]
 6747 | static void AddOrfListToDoc(DoC doc, ValNodePtr list)
      |             ^~~~~~~~~~~~~~~
sequin4.c:3264:17: warning: ‘CorrectIDsForSeqHistAlign’ defined but not used [-Wunused-function]
 3264 | static SeqIdPtr CorrectIDsForSeqHistAlign (TAlignmentFilePtr afp, SeqEntryPtr sep)
      |                 ^~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:3237:18: warning: ‘FindBioseqForSeqHist’ defined but not used [-Wunused-function]
 3237 | static BioseqPtr FindBioseqForSeqHist (SeqAlignPtr salp)
      |                  ^~~~~~~~~~~~~~~~~~~~
In file included from ../include/asn2ff6.h:142,
                 from ../include/asn2ffp.h:50,
                 from sequin4.c:55:
../include/asnprt.h:61:21: warning: ‘amp’ defined but not used [-Wunused-variable]
   61 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnprt.h:60:19: warning: ‘at’ defined but not used [-Wunused-variable]
   60 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnprt.h:59:23: warning: ‘avn’ defined but not used [-Wunused-variable]
   59 | static AsnValxNodePtr avn = NULL;
      |                       ^~~
../include/asnprt.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnprt.h60";
      |               ^~~~~~~~~~~
sequin4.c: In function ‘MakeExonsFromFeatureIntervalsVisitFunc’:
sequin4.c:5910:16: warning: ‘strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5910 |       intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5801:15: note: ‘strand’ was declared here
 5801 |   Uint1       strand;
      |               ^~~~~~
sequin4.c:5910:16: warning: ‘stop’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5910 |       intron = AddIntronForInterval (bsp->length, stop, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5800:15: note: ‘stop’ was declared here
 5800 |   Int4        stop;
      |               ^~~~
sequin4.c:5908:16: warning: ‘start’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5908 |       intron = AddIntronForInterval (start, -1, last, strand, bsp, fuzz_from, fuzz_to, part_number);
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin4.c:5799:15: note: ‘start’ was declared here
 5799 |   Int4        start;
      |               ^~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin5.c: In function ‘GeneExtendFunc’:
sequin5.c:247:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
  247 |   GeneRefPtr     grp;
      |                  ^~~
sequin5.c: In function ‘RemoveGBIDsProc’:
sequin5.c:1372:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1372 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘RemoveGBProtIDsProc’:
sequin5.c:1422:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1422 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘RemoveGIProc’:
sequin5.c:1473:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
 1473 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
sequin5.c: In function ‘SetmRNAFieldString’:
sequin5.c:6548:17: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 6548 |   Int4          field_choice;
      |                 ^~~~~~~~~~~~
sequin5.c: In function ‘GetCDSGeneProtField’:
sequin5.c:7233:11: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 7233 |   Int4    field_choice;
      |           ^~~~~~~~~~~~
sequin5.c: In function ‘GetRNAFieldString’:
sequin5.c:7628:21: warning: variable ‘field_choice’ set but not used [-Wunused-but-set-variable]
 7628 |   Int4              field_choice;
      |                     ^~~~~~~~~~~~
sequin5.c:7622:14: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable]
 7622 |   RnaRefPtr  rrp;
      |              ^~~
sequin5.c: In function ‘SetRNAFieldString’:
sequin5.c:7863:17: warning: variable ‘rrp’ set but not used [-Wunused-but-set-variable]
 7863 |   RnaRefPtr     rrp;
      |                 ^~~
sequin5.c: In function ‘BioseqConstrainedFeaturesCallback’:
sequin5.c:11293:21: warning: variable ‘cop’ set but not used [-Wunused-but-set-variable]
11293 |   ConstraintOpPtr   cop;
      |                     ^~~
sequin5.c: In function ‘SampleDialogCopy’:
sequin5.c:13545:53: warning: variable ‘last_col’ set but not used [-Wunused-but-set-variable]
13545 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                                     ^~~~~~~~
sequin5.c:13545:42: warning: variable ‘first_col’ set but not used [-Wunused-but-set-variable]
13545 |   Int2       start_col = 0, end_col = 0, first_col, last_col;
      |                                          ^~~~~~~~~
sequin5.c: In function ‘TestFeatureFieldChoice’:
sequin5.c:14066:31: warning: variable ‘dlg’ set but not used [-Wunused-but-set-variable]
14066 |   FeatureFieldChoiceDialogPtr dlg;
      |                               ^~~
sequin5.c: In function ‘CreateClickableListForSourceFeats’:
sequin5.c:14854:27: warning: variable ‘insertion_seq_txt’ set but not used [-Wunused-but-set-variable]
14854 |   CharPtr transposon_txt, insertion_seq_txt, note_txt;
      |                           ^~~~~~~~~~~~~~~~~
sequin5.c:14854:11: warning: variable ‘transposon_txt’ set but not used [-Wunused-but-set-variable]
14854 |   CharPtr transposon_txt, insertion_seq_txt, note_txt;
      |           ^~~~~~~~~~~~~~
sequin5.c: In function ‘CDSToMiscFeatConvertFunc’:
sequin5.c:15014:24: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
15014 |   Boolean              rval = FALSE;
      |                        ^~~~
sequin5.c: In function ‘GetRegionOpts’:
sequin5.c:15152:25: warning: unused variable ‘rval’ [-Wunused-variable]
15152 |   Boolean               rval = FALSE;
      |                         ^~~~
sequin5.c: In function ‘NewConvertFeaturesByList’:
sequin5.c:15322:14: warning: unused variable ‘only_pseudo’ [-Wunused-variable]
15322 |   Boolean    only_pseudo = FALSE;
      |              ^~~~~~~~~~~
sequin5.c: In function ‘FeatureRemoveOrConvertAction’:
sequin5.c:15588:25: warning: variable ‘sfp’ set but not used [-Wunused-but-set-variable]
15588 |   SeqFeatPtr            sfp;
      |                         ^~~
sequin5.c: In function ‘CDSGeneProtAECRDialog’:
sequin5.c:18564:25: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
18564 |   SeqEntryPtr           sep;
      |                         ^~~
sequin5.c: In function ‘CDSGeneProtConvert’:
sequin5.c:18931:18: warning: unused variable ‘str_dst’ [-Wunused-variable]
18931 |   CharPtr        str_dst = NULL;
      |                  ^~~~~~~
sequin5.c: In function ‘CDSGeneProtParse’:
sequin5.c:19141:18: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable]
19141 |   ApplyValueData avd;
      |                  ^~~
sequin5.c: In function ‘RNAQualListDialog’:
sequin5.c:21603:22: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
21603 |   SeqEntryPtr        sep;
      |                      ^~~
sequin5.c: In function ‘GetRNAFeatureList’:
sequin5.c:21792:14: warning: variable ‘matches’ set but not used [-Wunused-but-set-variable]
21792 |   Boolean    matches;
      |              ^~~~~~~
sequin5.c: In function ‘RNAQualConvertSwapParseList’:
sequin5.c:21924:26: warning: variable ‘avd’ set but not used [-Wunused-but-set-variable]
21924 |   ApplyValueData         avd;
      |                          ^~~
sequin5.c: In function ‘RNAQualEditRemoveList’:
sequin5.c:22021:20: warning: unused variable ‘rval’ [-Wunused-variable]
22021 |   Boolean          rval = TRUE;
      |                    ^~~~
sequin5.c: In function ‘GetGBQualSampleName’:
sequin5.c:22729:14: warning: variable ‘num_feature_choices’ set but not used [-Wunused-but-set-variable]
22729 |   Int4       num_feature_choices;
      |              ^~~~~~~~~~~~~~~~~~~
sequin5.c: In function ‘ConvertGeneLocusTagToOldLocusTagCallback’:
sequin5.c:22964:28: warning: variable ‘mp’ set but not used [-Wunused-but-set-variable]
22964 |   LocusTagToOldLocusTagPtr mp;
      |                            ^~
sequin5.c: In function ‘NewSegregateBioseqSet’:
sequin5.c:26425:22: warning: variable ‘p’ set but not used [-Wunused-but-set-variable]
26425 |   PrompT             p, p2;
      |                      ^
sequin5.c: In function ‘CompareBulkRows’:
sequin5.c:27910:8: warning: variable ‘col’ set but not used [-Wunused-but-set-variable]
27910 |   Int4 col;
      |        ^~~
sequin5.c: In function ‘ResortBulkEditorRows’:
sequin5.c:28177:20: warning: unused variable ‘matches’ [-Wunused-variable]
28177 |   ValNodePtr       matches = NULL, vnp;
      |                    ^~~~~~~
sequin5.c:28174:26: warning: unused variable ‘last_inserted’ [-Wunused-variable]
28174 |   Int4 row_num, sub_num, last_inserted = 0, comp, col;
      |                          ^~~~~~~~~~~~~
sequin5.c: In function ‘UpdateBulkEdDisplay’:
sequin5.c:29258:17: warning: unused variable ‘text_len’ [-Wunused-variable]
29258 |   Int4       i, text_len = 0, sub_num;
      |                 ^~~~~~~~
sequin5.c: In function ‘AddColumnToRowList’:
sequin5.c:29993:11: warning: unused variable ‘m’ [-Wunused-variable]
29993 |   Int4 i, m = 0, f = 0, num_columns = 1;
      |           ^
sequin5.c: In function ‘ApplyBulkEditCommon’:
sequin5.c:30418:23: warning: unused variable ‘need_redraw’ [-Wunused-variable]
30418 |   Boolean             need_redraw = FALSE;
      |                       ^~~~~~~~~~~
sequin5.c: In function ‘CopyAllFieldsFromList’:
sequin5.c:30773:8: warning: unused variable ‘num_full’ [-Wunused-variable]
30773 |   Int4 num_full = 0;
      |        ^~~~~~~~
sequin5.c: In function ‘BulkEditorObjectList’:
sequin5.c:32741:22: warning: unused variable ‘subtype’ [-Wunused-variable]
32741 |   Uint1              subtype = 0;
      |                      ^~~~~~~
sequin5.c: In function ‘BulkEditorBaseForm’:
sequin5.c:32798:22: warning: variable ‘field_list’ set but not used [-Wunused-but-set-variable]
32798 |   BulkEdFieldPtr     field_list = NULL;
      |                      ^~~~~~~~~~
sequin5.c: In function ‘GetSpecificHostCorrectionCategory’:
sequin5.c:33567:22: warning: unused variable ‘fmt’ [-Wunused-variable]
33567 |   CharPtr            fmt = "Unable to suggest correction for '%s'";
      |                      ^~~
In file included from ../include/tax3api.h:51,
                 from sequin5.c:78:
sequin5.c: At top level:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin5.c:32057:13: warning: ‘BulkSrcSetOrgModDescTF’ defined but not used [-Wunused-function]
32057 | static void BulkSrcSetOrgModDescTF (Pointer target, Pointer data, Uint2 mod_type)
      |             ^~~~~~~~~~~~~~~~~~~~~~
sequin5.c:32036:16: warning: ‘BulkSrcGetOrgModDescTF’ defined but not used [-Wunused-function]
32036 | static Pointer BulkSrcGetOrgModDescTF (Uint1 data_choice, Pointer data, Uint2 mod_type)
      |                ^~~~~~~~~~~~~~~~~~~~~~
sequin5.c:31734:23: warning: ‘GetBulkEditorFieldListForFeature’ defined but not used [-Wunused-function]
31734 | static BulkEdFieldPtr GetBulkEditorFieldListForFeature (SeqFeatPtr sfp)
      |                       ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c:31268:16: warning: ‘BulkGetPseudo’ defined but not used [-Wunused-function]
31268 | static Pointer BulkGetPseudo (Pointer data)
      |                ^~~~~~~~~~~~~
sequin5.c:31257:13: warning: ‘BulkSetPseudo’ defined but not used [-Wunused-function]
31257 | static void BulkSetPseudo (Pointer target, Pointer val)
      |             ^~~~~~~~~~~~~
sequin5.c:31246:16: warning: ‘BulkReleaseTrueFalse’ defined but not used [-Wunused-function]
31246 | static Pointer BulkReleaseTrueFalse (Pointer p)
      |                ^~~~~~~~~~~~~~~~~~~~
sequin5.c:31080:15: warning: ‘BulkNucLocationDialog’ defined but not used [-Wunused-function]
31080 | static DialoG BulkNucLocationDialog (GrouP g, CharPtr name, SeqEntryPtr sep)
      |               ^~~~~~~~~~~~~~~~~~~~~
sequin5.c:28858:28: warning: ‘TwoFieldBulkEditNew’ defined but not used [-Wunused-function]
28858 | static TwoFieldBulkEditPtr TwoFieldBulkEditNew (void)
      |                            ^~~~~~~~~~~~~~~~~~~
sequin5.c:28605:28: warning: ‘OneFieldBulkEditNew’ defined but not used [-Wunused-function]
28605 | static OneFieldBulkEditPtr OneFieldBulkEditNew (void)
      |                            ^~~~~~~~~~~~~~~~~~~
sequin5.c:28101:13: warning: ‘FlatCopyRows’ defined but not used [-Wunused-function]
28101 | static Int4 FlatCopyRows (BulkEditorRowPtr new_rows, BulkEditorRowPtr orig_rows, BulkEdFieldPtr field_list)
      |             ^~~~~~~~~~~~
sequin5.c:27569:13: warning: ‘FreeBulkEditorValuesList’ defined but not used [-Wunused-function]
27569 | static void FreeBulkEditorValuesList (ValNodePtr PNTR values_list, Int4 num_rows, BulkEdFieldPtr field_list)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c:21287:23: warning: ‘AECRRNAQualFree’ defined but not used [-Wunused-function]
21287 | static AECRRNAQualPtr AECRRNAQualFree (AECRRNAQualPtr ap)
      |                       ^~~~~~~~~~~~~~~
sequin5.c:12796:25: warning: ‘ParseFieldSrcFree’ defined but not used [-Wunused-function]
12796 | static ParseFieldSrcPtr ParseFieldSrcFree (ParseFieldSrcPtr pfsp)
      |                         ^~~~~~~~~~~~~~~~~
sequin5.c:438:13: warning: ‘ProcessOligo’ defined but not used [-Wunused-function]
  438 | static void ProcessOligo (SeqEntryPtr sep, CharPtr sequence, CharPtr title)
      |             ^~~~~~~~~~~~
sequin5.c:171:16: warning: ‘GetSequenceString’ defined but not used [-Wunused-function]
  171 | static CharPtr GetSequenceString (BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~
sequin5.c:88:13: warning: ‘CommonLaunchBioseqViewer’ defined but not used [-Wunused-function]
   88 | static void CommonLaunchBioseqViewer (SeqEntryPtr sep, CharPtr path, Boolean directToEditor)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/netblap3.h:134,
                 from sequin5.c:53:
../include/blstspc.h:229:21: warning: ‘amp’ defined but not used [-Wunused-variable]
  229 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/blstspc.h:228:19: warning: ‘at’ defined but not used [-Wunused-variable]
  228 | static AsnTypePtr at = atx;
      |                   ^~
../include/blstspc.h:227:23: warning: ‘avn’ defined but not used [-Wunused-variable]
  227 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/blstspc.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "blstspc.h23";
      |               ^~~~~~~~~~~
sequin5.c: In function ‘EditLocusActnProc’:
sequin5.c:605:28: warning: ‘%s’ directive writing up to 15 bytes into a region of size between 13 and 76 [-Wformat-overflow=]
  605 |           sprintf (tmp, "%s%s", str, num);
      |                            ^~        ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 1 and 79 bytes into a destination of size 76
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin5.c: In function ‘ConvertDescriptorFieldCallback’:
sequin5.c:5784:18: warning: ‘dst_text’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5784 |     avd.new_text = dst_text;
      |     ~~~~~~~~~~~~~^~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin5.c:47:
sequin5.c: In function ‘ApplyEditConvertRemoveCombo.constprop’:
../include/vibdefns.h:535:22: warning: ‘m’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
sequin5.c:17563:42: note: ‘m’ was declared here
17563 |   GrouP                     h, g1, k, n, m;
      |                                          ^
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin6.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin6.c: In function ‘RemoveOrgModText’:
sequin6.c:3069:35: warning: variable ‘next_mod’ set but not used [-Wunused-but-set-variable]
 3069 |   OrgModPtr mod, prev_mod = NULL, next_mod;
      |                                   ^~~~~~~~
sequin6.c: In function ‘TrimCodingRegionsFoNsCallback’:
sequin6.c:4576:31: warning: unused variable ‘cut’ [-Wunused-variable]
 4576 |   SeqLocPtr          slp, sp, cut;
      |                               ^~~
sequin6.c:4576:22: warning: unused variable ‘slp’ [-Wunused-variable]
 4576 |   SeqLocPtr          slp, sp, cut;
      |                      ^~~
sequin6.c: In function ‘GapLocationsFromNs’:
sequin6.c:4750:15: warning: variable ‘seq_ext’ set but not used [-Wunused-but-set-variable]
 4750 |   ValNodePtr  seq_ext;
      |               ^~~~~~~
sequin6.c:4749:15: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 4749 |   Int4        len;
      |               ^~~
sequin6.c: In function ‘ApplyBioFeatToList’:
sequin6.c:6400:23: warning: variable ‘oldscope’ set but not used [-Wunused-but-set-variable]
 6400 |   SeqEntryPtr   nsep, oldscope;
      |                       ^~~~~~~~
sequin6.c: In function ‘RNAWordsFromString’:
sequin6.c:13298:32: warning: variable ‘last_pos’ set but not used [-Wunused-but-set-variable]
13298 |   CharPtr     last_hit = NULL, last_pos = NULL;
      |                                ^~~~~~~~
sequin6.c:13298:15: warning: variable ‘last_hit’ set but not used [-Wunused-but-set-variable]
13298 |   CharPtr     last_hit = NULL, last_pos = NULL;
      |               ^~~~~~~~
sequin6.c: In function ‘FeatureEditorActionGroup’:
sequin6.c:14382:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
14382 |   SeqEntryPtr sep;
      |               ^~~
sequin6.c: In function ‘DoPartialFeatureProc’:
sequin6.c:14631:16: warning: variable ‘dash_at_end’ set but not used [-Wunused-but-set-variable]
14631 |   Boolean      dash_at_end = FALSE;
      |                ^~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from sequin6.c:60:
sequin6.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
sequin6.c:9215:13: warning: ‘LongestMatch’ defined but not used [-Wunused-function]
 9215 | static Int2 LongestMatch (
      |             ^~~~~~~~~~~~
sequin6.c:9121:13: warning: ‘RevcompString’ defined but not used [-Wunused-function]
 9121 | static void RevcompString (
      |             ^~~~~~~~~~~~~
sequin6.c:9093:13: warning: ‘ExtractString’ defined but not used [-Wunused-function]
 9093 | static void ExtractString (
      |             ^~~~~~~~~~~~~
sequin6.c:5459:1: warning: ‘RemoveTerminalNsFromLocation’ defined but not used [-Wunused-function]
 5459 | RemoveTerminalNsFromLocation
      | ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin6.c:5046:13: warning: ‘AppendFirstToFeat’ defined but not used [-Wunused-function]
 5046 | static void AppendFirstToFeat (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~
sequin6.c: In function ‘MakeFluCommentIdList’:
sequin6.c:13116:28: warning: ‘id_len’ may be used uninitialized in this function [-Wmaybe-uninitialized]
13116 |         list_len += id_len + 2;
      |                     ~~~~~~~^~~
sequin6.c: In function ‘ParseHelpFile.part.0’:
sequin6.c:11607:33: warning: ‘%s’ directive writing up to 511 bytes into a region of size between 0 and 511 [-Wformat-overflow=]
11607 |               sprintf (str, "%s|%s", heading, section);
      |                                 ^~            ~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin6.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 2 and 1024 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin6.c:45:
sequin6.c: In function ‘CreateFieldSubfieldDlg.constprop’:
../include/vibdefns.h:535:22: warning: ‘g2’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  535 | #define AlignObjects Nlm_AlignObjects
      |                      ^~~~~~~~~~~~~~~~
sequin6.c:430:29: note: ‘g2’ was declared here
  430 |   GrouP               p, g, g2;
      |                             ^~
sequin7.c:46:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   46 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sequin7.c:47:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   47 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin7.c:53:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin7.c: In function ‘GeneExtendFunc’:
sequin7.c:959:18: warning: variable ‘grp’ set but not used [-Wunused-but-set-variable]
  959 |   GeneRefPtr     grp;
      |                  ^~~
sequin7.c: In function ‘FinishConvertingToCDS’:
sequin7.c:2771:17: warning: variable ‘nsep’ set but not used [-Wunused-but-set-variable]
 2771 |   SeqEntryPtr   nsep;
      |                 ^~~~
sequin7.c: In function ‘SetBestFrame’:
sequin7.c:5218:26: warning: variable ‘seq_str2’ set but not used [-Wunused-but-set-variable]
 5218 |   CharPtr      seq_str1, seq_str2;
      |                          ^~~~~~~~
sequin7.c:5218:16: warning: variable ‘seq_str1’ set but not used [-Wunused-but-set-variable]
 5218 |   CharPtr      seq_str1, seq_str2;
      |                ^~~~~~~~
sequin7.c: In function ‘RemoveProteinsAndOptionallyRenormalize’:
sequin7.c:5679:18: warning: unused variable ‘tmp’ [-Wunused-variable]
 5679 |   ValNodePtr     tmp;
      |                  ^~~
sequin7.c:5675:18: warning: unused variable ‘ompc’ [-Wunused-variable]
 5675 |   OMProcControl  ompc;
      |                  ^~~~
sequin7.c:5672:18: warning: unused variable ‘itemID’ [-Wunused-variable]
 5672 |   Uint4          itemID;
      |                  ^~~~~~
sequin7.c:5671:18: warning: unused variable ‘bsp’ [-Wunused-variable]
 5671 |   BioseqPtr      bsp;
      |                  ^~~
sequin7.c: In function ‘RNABlastOptionNew’:
sequin7.c:7045:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
 7045 |  Int2           rval;
      |                 ^~~~
sequin7.c: In function ‘GetSubListForRNAStrandCorrection’:
sequin7.c:7325:27: warning: variable ‘found_id’ set but not used [-Wunused-but-set-variable]
 7325 |   Boolean                 found_id;
      |                           ^~~~~~~~
sequin7.c: In function ‘ShowClickableItemListEx’:
sequin7.c:9473:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9473 |   SeqEntryPtr              sep;
      |                            ^~~
sequin7.c: In function ‘ChooseFeaturesForConversion’:
sequin7.c:9614:28: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9614 |   SeqEntryPtr              sep;
      |                            ^~~
sequin7.c: In function ‘GetTableOptions’:
sequin7.c:13793:30: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
13793 |   SeqEntryPtr                sep;
      |                              ^~~
sequin7.c: In function ‘RemoveCDSandmRNAForGene’:
sequin7.c:14076:27: warning: variable ‘prev_xref’ set but not used [-Wunused-but-set-variable]
14076 |   SeqFeatXrefPtr    xref, prev_xref, next_xref;
      |                           ^~~~~~~~~
sequin7.c: In function ‘CombineToCreatePseudoGene’:
sequin7.c:14159:48: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘TrimTaxFix’:
sequin7.c:15679:46: warning: suggest parentheses around ‘&&’ within ‘||’ [-Wparentheses]
15679 |       || word_break - t->suggested_fix == 10 && StringNICmp (t->suggested_fix, "uncultured ", 11) == 0) {
      |          ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘FindBestNTrimSites’:
sequin7.c:16522:21: warning: unused variable ‘trim_list’ [-Wunused-variable]
16522 |   ValNodePtr        trim_list = NULL;
      |                     ^~~~~~~~~
sequin7.c: In function ‘BarcodeBlastOptionNew’:
sequin7.c:16791:17: warning: variable ‘rval’ set but not used [-Wunused-but-set-variable]
16791 |  Int2           rval;
      |                 ^~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin7.c:74:
sequin7.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin7.c:77:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘GetSubListForRNAStrandCorrection’:
sequin7.c:7390:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 7390 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
sequin7.c:14322:13: warning: ‘FindBadLatLonSourceFeat’ defined but not used [-Wunused-function]
14322 | static void FindBadLatLonSourceFeat (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:12208:13: warning: ‘RemoveBarcodeKeywordsFromLowTrace’ defined but not used [-Wunused-function]
12208 | static void RemoveBarcodeKeywordsFromLowTrace (ButtoN b)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:6629:16: warning: ‘DoesBioseqMatchStringConstraint’ defined but not used [-Wunused-function]
 6629 | static Boolean DoesBioseqMatchStringConstraint (BioseqPtr bsp, StringConstraintXPtr scp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:4781:13: warning: ‘RemoveMultipleTitles’ defined but not used [-Wunused-function]
 4781 | static void RemoveMultipleTitles (SeqEntryPtr sep, Pointer mydata, Int4 index, Int2 indent)
      |             ^~~~~~~~~~~~~~~~~~~~
sequin7.c:47:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable]
   47 | static char *time_of_compilation = __TIME__;
      |              ^~~~~~~~~~~~~~~~~~~
sequin7.c: In function ‘CombineToCreatePseudoGene’:
sequin7.c:14273:27: warning: ‘int_strand’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14273 |     first_sfp->location = SeqLocIntNew (int_left, int_right, int_strand, sip);
      |                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:14159:48: warning: ‘best_right’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                     ~~~~~~~~~~~~~~~~~~~~~~~~~~~^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin7.c:14159:18: warning: ‘best_left’ may be used uninitialized in this function [-Wmaybe-uninitialized]
14157 |       } else if (feat_list == NULL
      |                  ~~~~~~~~~~~~~~~~~
14158 |                  || best_left > fcontext.left
      |                  ~~~~~~~~~~~~~~~~~~~~~~~~~~~~
14159 |                  || best_left == fcontext.left && best_right < fcontext.right) {
      |                  ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin8.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin8.c: In function ‘PopulateAAPopup’:
sequin8.c:1198:20: warning: variable ‘first’ set but not used [-Wunused-but-set-variable]
 1198 |   Uint1            first;
      |                    ^~~~~
sequin8.c: In function ‘SelectBestRepeatsFromList’:
sequin8.c:7867:18: warning: variable ‘best_len’ set but not used [-Wunused-but-set-variable]
 7867 |   Int4           best_len;
      |                  ^~~~~~~~
sequin8.c:7862:18: warning: variable ‘strand2’ set but not used [-Wunused-but-set-variable]
 7862 |   Uint1 strand1, strand2;
      |                  ^~~~~~~
sequin8.c:7862:9: warning: variable ‘strand1’ set but not used [-Wunused-but-set-variable]
 7862 |   Uint1 strand1, strand2;
      |         ^~~~~~~
sequin8.c: In function ‘ExamineAln’:
sequin8.c:8328:8: warning: variable ‘len’ set but not used [-Wunused-but-set-variable]
 8328 |   Int4 len, num_aln = 0;
      |        ^~~
sequin8.c: In function ‘FindIntervalConflict’:
sequin8.c:10165:39: warning: self-comparison always evaluates to true [-Wtautological-compare]
10165 |   } else if (left2 <= left1 && right2 >= right2) {
      |                                       ^~
sequin8.c: In function ‘BuildConflictLists’:
sequin8.c:10507:69: warning: self-comparison always evaluates to false [-Wtautological-compare]
10507 |         if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) {
      |                                                                     ^~
sequin8.c:10513:69: warning: self-comparison always evaluates to false [-Wtautological-compare]
10513 |         if (tpa_conflict != eIntervalConflict_none || prim_conflict != prim_conflict) {
      |                                                                     ^~
sequin8.c: In function ‘ScrollToDiscrepancyItem’:
sequin8.c:14861:17: warning: variable ‘special_flag’ set but not used [-Wunused-but-set-variable]
14861 |   Boolean       special_flag = FALSE;
      |                 ^~~~~~~~~~~~
sequin8.c: In function ‘SortVnpByLinkStatus’:
sequin8.c:17767:33: warning: self-comparison always evaluates to false [-Wtautological-compare]
17767 |     } else if (fcontext2.itemID < fcontext2.itemID) {
      |                                 ^
sequin8.c: In function ‘SortVnpBymRNAPos’:
sequin8.c:17784:22: warning: variable ‘mrna2’ set but not used [-Wunused-but-set-variable]
17784 |   SeqFeatPtr  mrna1, mrna2;
      |                      ^~~~~
sequin8.c:17784:15: warning: variable ‘mrna1’ set but not used [-Wunused-but-set-variable]
17784 |   SeqFeatPtr  mrna1, mrna2;
      |               ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin8.c:57:
sequin8.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin8.c:63:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin8.c:18941:19: warning: ‘DivideClickableItemListByEntityID’ defined but not used [-Wunused-function]
18941 | static ValNodePtr DivideClickableItemListByEntityID (ValNodePtr clickable_list)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:14351:13: warning: ‘VisitFeaturesInViewedBioseqs’ defined but not used [-Wunused-function]
14351 | static void VisitFeaturesInViewedBioseqs (Pointer userdata, VisitFeaturesFunc callback)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:12559:13: warning: ‘MakeProteinTitlesInSequinStyle’ defined but not used [-Wunused-function]
12559 | static void MakeProteinTitlesInSequinStyle (Uint2 entityID, SeqEntryPtr sep)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:12367:13: warning: ‘ShowAssemblyAlignment’ defined but not used [-Wunused-function]
12367 | static void ShowAssemblyAlignment (SeqAlignPtr salp)
      |             ^~~~~~~~~~~~~~~~~~~~~
sequin8.c:8326:13: warning: ‘ExamineAln’ defined but not used [-Wunused-function]
 8326 | static void ExamineAln (SeqAlignPtr sap)
      |             ^~~~~~~~~~
sequin8.c:7262:16: warning: ‘DoesFirstRepeatContainAllOtherRepeats’ defined but not used [-Wunused-function]
 7262 | static Boolean DoesFirstRepeatContainAllOtherRepeats (ValNodePtr start, ValNodePtr stop)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:6810:16: warning: ‘DoesRowContainPoint’ defined but not used [-Wunused-function]
 6810 | static Boolean DoesRowContainPoint (SeqAlignRowPtr row, Int4 point)
      |                ^~~~~~~~~~~~~~~~~~~
sequin8.c:6475:13: warning: ‘CKA_ShowAln’ defined but not used [-Wunused-function]
 6475 | static void CKA_ShowAln(SeqAlignPtr sap, CKA_AccPtr acc_head)
      |             ^~~~~~~~~~~
sequin8.c:6269:16: warning: ‘CKA_ValidateSeqAlign’ defined but not used [-Wunused-function]
 6269 | static Boolean CKA_ValidateSeqAlign(SeqAlignPtr sap, CKA_AccPtr acc_head, Int4 bioseqlen, ValNodePtr PNTR errors)
      |                ^~~~~~~~~~~~~~~~~~~~
sequin8.c:1538:18: warning: ‘SqnGetBioseqGivenSeqLoc’ defined but not used [-Wunused-function]
 1538 | static BioseqPtr SqnGetBioseqGivenSeqLoc (SeqLocPtr slp, Uint2 entityID)
      |                  ^~~~~~~~~~~~~~~~~~~~~~~
sequin8.c:536:13: warning: ‘FixReadingFrame’ defined but not used [-Wunused-function]
  536 | static void FixReadingFrame (
      |             ^~~~~~~~~~~~~~~
sequin8.c:309:13: warning: ‘ExtendOnePartialFeatureToEndOrGap’ defined but not used [-Wunused-function]
  309 | static void ExtendOnePartialFeatureToEndOrGap (SeqFeatPtr sfp, Pointer userdata)
      |             ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin8.c: In function ‘RecomputeSuggestedIntervalsForCDS’:
sequin8.c:606:50: warning: ‘%s’ directive writing up to 255 bytes into a region of size between 223 and 233 [-Wformat-overflow=]
  606 |           sprintf (str, "Processing sequence %d [%s]", *count, tmp);
      |                                                  ^~            ~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin8.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 290 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin9.c: In function ‘DoVecScreens’:
sequin9.c:629:19: warning: variable ‘hits’ set but not used [-Wunused-but-set-variable]
  629 |   Int2            hits;
      |                   ^~~~
sequin9.c: In function ‘AcceptArgumentFormProc’:
sequin9.c:1529:18: warning: variable ‘choice’ set but not used [-Wunused-but-set-variable]
 1529 |   Int2           choice;
      |                  ^~~~~~
sequin9.c: In function ‘ExtendBothEnds’:
sequin9.c:4838:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4838 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘Extend5Prime’:
sequin9.c:4906:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4906 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘Extend3Prime’:
sequin9.c:4966:17: warning: variable ‘oldbsp’ set but not used [-Wunused-but-set-variable]
 4966 |   BioseqPtr     oldbsp;
      |                 ^~~~~~
sequin9.c: In function ‘FixProteinString’:
sequin9.c:5177:16: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5177 |   Int4         start, stop, new_stop, prot_len;
      |                ^~~~~
sequin9.c: In function ‘ShiftStopForLengthChange’:
sequin9.c:5254:13: warning: variable ‘start’ set but not used [-Wunused-but-set-variable]
 5254 |   Int4      start, stop, new_stop;
      |             ^~~~~
sequin9.c: In function ‘ExtendProtein5’:
sequin9.c:5447:23: warning: variable ‘new_stop’ set but not used [-Wunused-but-set-variable]
 5447 |   Int4          stop, new_stop;
      |                       ^~~~~~~~
sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’:
sequin9.c:5975:17: warning: variable ‘changed_frame’ set but not used [-Wunused-but-set-variable]
 5975 |   Boolean       changed_frame;
      |                 ^~~~~~~~~~~~~
sequin9.c: In function ‘DrawAlignDiffs’:
sequin9.c:7468:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable]
 7468 |   Int4       len1, len2, i;
      |                    ^~~~
sequin9.c:7468:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable]
 7468 |   Int4       len1, len2, i;
      |              ^~~~
sequin9.c: In function ‘MakeAlignDetails’:
sequin9.c:7603:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable]
 7603 |   Int4     aln_length;
      |            ^~~~~~~~~~
sequin9.c: In function ‘MakeAlignSequence’:
sequin9.c:7652:56: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
 7652 |   Int4       aln_length, len, lens, start, stop, from, to, i, j;
      |                                                        ^~
sequin9.c:7652:50: warning: variable ‘from’ set but not used [-Wunused-but-set-variable]
 7652 |   Int4       aln_length, len, lens, start, stop, from, to, i, j;
      |                                                  ^~~~
sequin9.c: In function ‘DrawUpdateAlignmentDiffs’:
sequin9.c:12920:20: warning: variable ‘len2’ set but not used [-Wunused-but-set-variable]
12920 |   Int4       len1, len2, i;
      |                    ^~~~
sequin9.c:12920:14: warning: variable ‘len1’ set but not used [-Wunused-but-set-variable]
12920 |   Int4       len1, len2, i;
      |              ^~~~
sequin9.c: In function ‘MakeAlignmentDetailsPicture’:
sequin9.c:13005:12: warning: variable ‘aln_length’ set but not used [-Wunused-but-set-variable]
13005 |   Int4     aln_length;
      |            ^~~~~~~~~~
sequin9.c: In function ‘MakeUpdateAlignmentSequenceString’:
sequin9.c:13087:44: warning: variable ‘to’ set but not used [-Wunused-but-set-variable]
13087 |   Int4       len, lens, start, stop, from, to, i, j;
      |                                            ^~
sequin9.c:13087:38: warning: variable ‘from’ set but not used [-Wunused-but-set-variable]
13087 |   Int4       len, lens, start, stop, from, to, i, j;
      |                                      ^~~~
sequin9.c: In function ‘SetPreviewSequenceSelectionByPosition’:
sequin9.c:15261:46: warning: variable ‘curr_scroll’ set but not used [-Wunused-but-set-variable]
15261 |   Int4                              prevrow, curr_scroll, max_scroll;
      |                                              ^~~~~~~~~~~
sequin9.c: In function ‘DoTestUpdateOneSequence’:
sequin9.c:16366:30: warning: variable ‘update_bsp’ set but not used [-Wunused-but-set-variable]
16366 |   BioseqPtr                  update_bsp = NULL;
      |                              ^~~~~~~~~~
sequin9.c:16365:30: warning: variable ‘update_entityID’ set but not used [-Wunused-but-set-variable]
16365 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c: In function ‘UpdateAllSequences’:
sequin9.c:16656:30: warning: unused variable ‘update_entityID’ [-Wunused-variable]
16656 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c:16655:30: warning: unused variable ‘update_bsp’ [-Wunused-variable]
16655 |   BioseqPtr                  update_bsp = NULL;
      |                              ^~~~~~~~~~
sequin9.c: In function ‘CleanupUpdateMultiSequence’:
sequin9.c:16976:30: warning: unused variable ‘entityIDList’ [-Wunused-variable]
16976 |   ValNodePtr                 entityIDList = NULL;
      |                              ^~~~~~~~~~~~
sequin9.c: In function ‘RemoveIdenticalUpdates’:
sequin9.c:17219:30: warning: unused variable ‘update_entityID’ [-Wunused-variable]
17219 |   Uint2                      update_entityID = 0;
      |                              ^~~~~~~~~~~~~~~
sequin9.c: In function ‘UpdateSequenceViaDownload’:
sequin9.c:18323:15: warning: variable ‘is_na’ set but not used [-Wunused-but-set-variable]
18323 |   Boolean     is_na;
      |               ^~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from sequin9.c:47:
sequin9.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from sequin9.c:50:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
In file included from ../include/sqnutils.h:51,
                 from ../include/alignmgr2.h:111,
                 from ../include/actutils.h:105,
                 from sequin9.c:56:
../include/objentgene.h:177:33: warning: ‘Method_methodFree’ declared ‘static’ but never defined [-Wunused-function]
  177 | static Method_methodPtr LIBCALL Method_methodFree PROTO ((Method_methodPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objentgene.h:178:33: warning: ‘Method_methodAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  178 | static Method_methodPtr LIBCALL Method_methodAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objentgene.h:179:24: warning: ‘Method_methodAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  179 | static Boolean LIBCALL Method_methodAsnWrite PROTO (( Method_methodPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
sequin9.c:215:13: warning: ‘TruncateCDS’ declared ‘static’ but never defined [-Wunused-function]
  215 | static void TruncateCDS (SeqFeatPtr sfp, Uint1 frame, BioseqPtr pbsp);
      |             ^~~~~~~~~~~
sequin9.c:16618:29: warning: ‘FeatureUpdateNew’ defined but not used [-Wunused-function]
16618 | static FeatureUpdateInfoPtr FeatureUpdateNew (BioseqPtr orig_bsp, BioseqPtr update_bsp)
      |                             ^~~~~~~~~~~~~~~~
sequin9.c:1466:16: warning: ‘StrSaveNoNullEncodeSpaces’ defined but not used [-Wunused-function]
 1466 | static CharPtr StrSaveNoNullEncodeSpaces (CharPtr from)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c: In function ‘ListIds’:
sequin9.c:16197:14: warning: ‘bssp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
16197 |       for (s = bssp->seq_set; s != NULL; s = s->next) {
      |            ~~^~~~~~~~~~~~~~~
sequin9.c: In function ‘TruncateSeqGraphValues’:
sequin9.c:3192:14: warning: ‘fmax’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3192 |           if (((FloatHiPtr)new_values)[newpos] > fmax) {
      |              ^
sequin9.c:3195:14: warning: ‘fmin’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 3195 |           if (((FloatHiPtr)new_values)[newpos] < fmin) {
      |              ^
sequin9.c: In function ‘AcceptArgumentFormProc’:
sequin9.c:1670:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1670 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1684:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1684 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1635:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1635 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1649:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1649 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1600:39: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1600 |                   sprintf (cpy, "%s=%s", upp->param, last);
      |                                       ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c:1614:37: warning: ‘__builtin___sprintf_chk’ may write a terminating nul past the end of the destination [-Wformat-overflow=]
 1614 |                 sprintf (cpy, "%s=%s", upp->param, last);
      |                                     ^
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/objsub.h:76,
                 from ../include/subutil.h:50,
                 from sequin9.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 257) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin9.c: In function ‘PrepareUpdateAlignmentForProtein’:
sequin9.c:5884:41: warning: ‘gene_sfp’ may be used uninitialized in this function [-Wmaybe-uninitialized]
 5884 |   if (fp == NULL || gene == NULL || gene->location == NULL) return;
      |                                     ~~~~^~~~~~~~~~
sequin9.c:5981:17: note: ‘gene_sfp’ was declared here
 5981 |   SeqFeatPtr    gene_sfp;
      |                 ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin10.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sequin10.c: In function ‘DoAutoDefLine’:
sequin10.c:198:17: warning: unused variable ‘uop’ [-Wunused-variable]
  198 |   UserObjectPtr uop;
      |                 ^~~
sequin10.c: In function ‘ApplyTableQuals’:
sequin10.c:4576:26: warning: variable ‘fqtd’ set but not used [-Wunused-but-set-variable]
 4576 |   FeatureQualTableData   fqtd;
      |                          ^~~~
sequin10.c: In function ‘OkCancelTellMeMore’:
sequin10.c:4937:10: warning: variable ‘p1’ set but not used [-Wunused-but-set-variable]
 4937 |   PrompT p1;
      |          ^~
sequin10.c: In function ‘LookupJournalTitlesInObjectTable’:
sequin10.c:5094:11: warning: unused variable ‘rval’ [-Wunused-variable]
 5094 |   Boolean rval = TRUE;
      |           ^~~~
sequin10.c: In function ‘EraseAllFieldsWhenBlank’:
sequin10.c:5874:19: warning: unused variable ‘columns’ [-Wunused-variable]
 5874 |   ValNodePtr      columns = NULL;
      |                   ^~~~~~~
sequin10.c: In function ‘ExternalSourceQualifierTableReader’:
sequin10.c:6812:22: warning: variable ‘any_valid’ set but not used [-Wunused-but-set-variable]
 6812 |   Boolean            any_valid = FALSE;
      |                      ^~~~~~~~~
sequin10.c: In function ‘LoadFeatureFieldTable’:
sequin10.c:9115:24: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 9115 |   SeqEntryPtr          sep;
      |                        ^~~
sequin10.c: In function ‘OrgModListsMatch’:
sequin10.c:10856:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
10856 |   Boolean    found;
      |              ^~~~~
sequin10.c: In function ‘SubtypeListsMatch’:
sequin10.c:11049:14: warning: variable ‘found’ set but not used [-Wunused-but-set-variable]
11049 |   Boolean    found;
      |              ^~~~~
sequin10.c: In function ‘TrimSequencesByAlignment’:
sequin10.c:12402:25: warning: variable ‘b’ set but not used [-Wunused-but-set-variable]
12402 |   ButtoN                b;
      |                         ^
sequin10.c: In function ‘AddOneFeatureBetween’:
sequin10.c:12809:14: warning: variable ‘seqfeattype’ set but not used [-Wunused-but-set-variable]
12809 |   Int4       seqfeattype;
      |              ^~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from sequin10.c:63:
sequin10.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from sequin10.c:68:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
sequin10.c:14399:13: warning: ‘PrintTPAHistErrors’ defined but not used [-Wunused-function]
14399 | static void PrintTPAHistErrors (LogInfoPtr lip, ValNodePtr errors)
      |             ^~~~~~~~~~~~~~~~~~
sequin10.c:12050:19: warning: ‘FindGeneInSeqEntryByLocusTag’ defined but not used [-Wunused-function]
12050 | static SeqFeatPtr FindGeneInSeqEntryByLocusTag (SeqEntryPtr sep, CharPtr locus_tag)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~
sequin10.c:9201:16: warning: ‘GetRevSectionInterval’ defined but not used [-Wunused-function]
 9201 | static Pointer GetRevSectionInterval (Uint1 data_choice, Pointer data, Pointer metadata)
      |                ^~~~~~~~~~~~~~~~~~~~~
sequin10.c:9183:16: warning: ‘GetRevSectionSequence’ defined but not used [-Wunused-function]
 9183 | static Pointer GetRevSectionSequence (Uint1 data_choice, Pointer data, Pointer metadata)
      |                ^~~~~~~~~~~~~~~~~~~~~
sequin10.c:3058:19: warning: ‘FreeTableData’ defined but not used [-Wunused-function]
 3058 | static ValNodePtr FreeTableData (ValNodePtr lines)
      |                   ^~~~~~~~~~~~~
sequin10.c:1495:19: warning: ‘OrgModTableColumnListFree’ defined but not used [-Wunused-function]
 1495 | static ValNodePtr OrgModTableColumnListFree (ValNodePtr vnp)
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/vibrant.h:130,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequin10.c:45:
sequin10.c: In function ‘AutoDefBaseFormCommon’:
../include/vibdefns.h:318:18: warning: ‘k’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  318 | #define CheckBox Nlm_CheckBox
      |                  ^~~~~~~~~~~~
sequin10.c:726:24: note: ‘k’ was declared here
  726 |   GrouP p, g1, s1, s2, k, k2;
      |                        ^
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sequinx.c:46:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
: Psequin
s390x-linux-gnu-gcc -o sbtedit -I. -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF -UINTERNAL_NCBI_SEQUIN sbtedit.c \
-lncbicn3d -lddvlib -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb \
-lncbitxc2 -lncbiid1 -lnetblast -lncbitool -lblastcompadj -lncbimla \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbiobj -lncbi  -lm
sbtedit.c:48:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   48 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
sbtedit.c:49:36: warning: macro "__TIME__" might prevent reproducible builds [-Wdate-time]
   49 | static char *time_of_compilation = __TIME__;
      |                                    ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from ../include/dlogutil.h:48,
                 from sequin.h:82,
                 from sbtedit.c:55:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
sbtedit.c: In function ‘LookupTaxonomyFunc’:
sbtedit.c:604:15: warning: variable ‘rsult’ set but not used [-Wunused-but-set-variable]
  604 |   Int4        rsult;
      |               ^~~~~
At top level:
sbtedit.c:49:14: warning: ‘time_of_compilation’ defined but not used [-Wunused-variable]
   49 | static char *time_of_compilation = __TIME__;
      |              ^~~~~~~~~~~~~~~~~~~
sbtedit.c:48:14: warning: ‘date_of_compilation’ defined but not used [-Wunused-variable]
   48 | static char *date_of_compilation = __DATE__;
      |              ^~~~~~~~~~~~~~~~~~~
: sbtedit
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" udvmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/explore.h:49,
                 from ../include/udviewer.h:209,
                 from udvmain.c:80:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
udvmain.c: In function ‘Nlm_Main’:
udvmain.c:232:8: warning: unused variable ‘rcL’ [-Wunused-variable]
  232 | RecT   rcL;
      |        ^~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
udvmain.c: At top level:
../include/objmmdb1.h:206:57: warning: ‘VersionOfDatabase_version_of_databaseFree’ declared ‘static’ but never defined [-Wunused-function]
  206 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseFree PROTO ((VersionOfDatabase_version_of_databasePtr ));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:72,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb1.h:207:57: warning: ‘VersionOfDatabase_version_of_databaseAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  207 | static VersionOfDatabase_version_of_databasePtr LIBCALL VersionOfDatabase_version_of_databaseAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                                         ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb1.h:208:24: warning: ‘VersionOfDatabase_version_of_databaseAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  208 | static Boolean LIBCALL VersionOfDatabase_version_of_databaseAsnWrite PROTO (( VersionOfDatabase_version_of_databasePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:73,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb2.h:151:43: warning: ‘Coordinates_coordinatesFree’ declared ‘static’ but never defined [-Wunused-function]
  151 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesFree PROTO ((Coordinates_coordinatesPtr ));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:152:43: warning: ‘Coordinates_coordinatesAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  152 | static Coordinates_coordinatesPtr LIBCALL Coordinates_coordinatesAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                           ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:153:24: warning: ‘Coordinates_coordinatesAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  153 | static Boolean LIBCALL Coordinates_coordinatesAsnWrite PROTO (( Coordinates_coordinatesPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:247:35: warning: ‘Surface_surfaceFree’ declared ‘static’ but never defined [-Wunused-function]
  247 | static Surface_surfacePtr LIBCALL Surface_surfaceFree PROTO ((Surface_surfacePtr ));
      |                                   ^~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:248:35: warning: ‘Surface_surfaceAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  248 | static Surface_surfacePtr LIBCALL Surface_surfaceAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                   ^~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb2.h:249:24: warning: ‘Surface_surfaceAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  249 | static Boolean LIBCALL Surface_surfaceAsnWrite PROTO (( Surface_surfacePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~
In file included from ../include/strimprt.h:74,
                 from ../include/mmdbapi1.h:234,
                 from ../include/accentr.h:143,
                 from udvmain.c:81:
../include/objmmdb3.h:287:37: warning: ‘Location_locationFree’ declared ‘static’ but never defined [-Wunused-function]
  287 | static Location_locationPtr LIBCALL Location_locationFree PROTO ((Location_locationPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:288:37: warning: ‘Location_locationAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  288 | static Location_locationPtr LIBCALL Location_locationAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:289:24: warning: ‘Location_locationAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  289 | static Boolean LIBCALL Location_locationAsnWrite PROTO (( Location_locationPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:310:37: warning: ‘Property_propertyFree’ declared ‘static’ but never defined [-Wunused-function]
  310 | static Property_propertyPtr LIBCALL Property_propertyFree PROTO ((Property_propertyPtr ));
      |                                     ^~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:311:37: warning: ‘Property_propertyAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  311 | static Property_propertyPtr LIBCALL Property_propertyAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                     ^~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:312:24: warning: ‘Property_propertyAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  312 | static Boolean LIBCALL Property_propertyAsnWrite PROTO (( Property_propertyPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:419:33: warning: ‘Region_regionFree’ declared ‘static’ but never defined [-Wunused-function]
  419 | static Region_regionPtr LIBCALL Region_regionFree PROTO ((Region_regionPtr ));
      |                                 ^~~~~~~~~~~~~~~~~
../include/objmmdb3.h:420:33: warning: ‘Region_regionAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  420 | static Region_regionPtr LIBCALL Region_regionAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                                 ^~~~~~~~~~~~~~~~~~~~
../include/objmmdb3.h:421:24: warning: ‘Region_regionAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  421 | static Boolean LIBCALL Region_regionAsnWrite PROTO (( Region_regionPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o udv -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF udvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant \
-lncbitool -lblastcompadj -lncbiobj \
-lncbi  -lm
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" ddvmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ddvmain.c:138:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
ddvmain.c:147:13: warning: ‘DDV_myargs’ initialized and declared ‘extern’
  147 | extern Args DDV_myargs[NUMARGS] = {
      |             ^~~~~~~~~~
ddvmain.c:267:16: warning: ‘DDV_UseNetwork’ defined but not used [-Wunused-function]
  267 | static Boolean DDV_UseNetwork(void)
      |                ^~~~~~~~~~~~~~
ddvmain.c: In function ‘Nlm_Main’:
ddvmain.c:441:5: warning: ‘UseNetwork’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  441 |  if (UseNetwork && EntrezIsInited()) EntrezBioseqFetchDisable();
      |     ^
s390x-linux-gnu-gcc -o ddv -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF ddvmain.o -lncbiid1 -lvibnet -lncbidesk -lblastapi -lblast -lncbimmdb -lddvlib \
-lncbiNacc -lnetentr -lnetcli -lncbicdr -lvibrant -lncbitool \
-lblastcompadj -lncbiobj -lncbi \
 -lm
s390x-linux-gnu-gcc -g -o taxblast -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF taxblast_main.c \
	-lblastapi -lblast -lnetblast -lncbiid1 -lncbitxc2 -lncbitool -lblastcompadj \
	-lnetcli -lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from taxblast_main.c:35:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
taxblast_main.c:1:19: warning: ‘rcsid’ defined but not used [-Wunused-const-variable=]
    1 | static char const rcsid[] = "$Id: taxblast_main.c,v";
      |                   ^~~~~
s390x-linux-gnu-gcc -g -o idfetch -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF idfetch.c -lncbiid1 -lnetcli -lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
idfetch.c: In function ‘Nlm_Main’:
idfetch.c:358:46: warning: variable ‘any_type’ set but not used [-Wunused-but-set-variable]
  358 |       found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
      |                                              ^~~~~~~~
idfetch.c:358:28: warning: variable ‘dna_type’ set but not used [-Wunused-but-set-variable]
  358 |       found_colon = FALSE, dna_type = FALSE, any_type = FALSE;
      |                            ^~~~~~~~
idfetch.c: In function ‘ProcessOneDocSum’:
idfetch.c:803:25: warning: unused variable ‘e2ry’ [-Wunused-variable]
  803 |   Entrez2ReplyPtr       e2ry;
      |                         ^~~~
idfetch.c:802:25: warning: unused variable ‘e2rq’ [-Wunused-variable]
  802 |   Entrez2RequestPtr     e2rq;
      |                         ^~~~
idfetch.c: In function ‘IdFetch_func’:
idfetch.c:852:13: warning: missing braces around initializer [-Wmissing-braces]
  852 |   SeqId  si={SEQID_GI,0,0};
      |             ^
      |                         {}
idfetch.c:859:10: warning: variable ‘group_segs’ set but not used [-Wunused-but-set-variable]
  859 |   Uint1  group_segs;
      |          ^~~~~~~~~~
idfetch.c: In function ‘BEGetUidsFromQuery’:
idfetch.c:1113:14: warning: unused variable ‘e2rp’ [-Wunused-variable]
 1113 |   E2ReplyPtr e2rp;
      |              ^~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
In function ‘strncpy’,
    inlined from ‘GetIntervalAccession’ at idfetch.c:1401:5:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 64 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
idfetch.c: In function ‘IdFetch_func’:
idfetch.c:961:5: warning: ‘gi_state’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  961 |     id_print_gi_state(gi_state,buf,sizeof(buf));
      |     ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/string.h:494,
                 from ../include/ncbilcl.h:156,
                 from ../include/ncbi.h:57,
                 from idfetch.c:30:
In function ‘strncpy’,
    inlined from ‘CreateMaxPlexParam’ at idfetch.c:1313:5,
    inlined from ‘Nlm_Main’ at idfetch.c:170:8:
/usr/s390x-linux-gnu/include/bits/string_fortified.h:106:10: warning: ‘__builtin_strncpy’ specified bound 1024 equals destination size [-Wstringop-truncation]
  106 |   return __builtin___strncpy_chk (__dest, __src, __len, __bos (__dest));
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
idfetch.c: In function ‘Nlm_Main’:
idfetch.c:501:19: warning: ‘type_int’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  501 |        Int4 tgi = TryGetGi( type_int, tacc, NULL, 0);
      |                   ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o asn2gb -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2gb.c -lncbiid1 -lnetcli \
    -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2gb.c: In function ‘HandleMultipleRecords’:
asn2gb.c:1748:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1748 |   system (cmmd);
      |   ^~~~~~~~~~~~~
asn2gb.c: In function ‘CompareFlatFiles’:
asn2gb.c:1185:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1185 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1192:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1192 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1217:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1217 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1243:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1243 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1246:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1246 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1251:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1251 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c:1254:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1254 |       system (cmmd);
      |       ^~~~~~~~~~~~~
asn2gb.c: In function ‘ReportDiffs’:
asn2gb.c:1072:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1072 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1075:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1075 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1078:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1078 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1081:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1081 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1084:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1084 |     system (cmmd);
      |     ^~~~~~~~~~~~~
asn2gb.c:1097:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 1097 |     system (cmmd);
      |     ^~~~~~~~~~~~~
At top level:
asn2gb.c:1291:13: warning: ‘CheckOrder’ defined but not used [-Wunused-function]
 1291 | static void CheckOrder (
      |             ^~~~~~~~~~
asn2gb.c:968:13: warning: ‘FreeUnpubAffil’ defined but not used [-Wunused-function]
  968 | static void FreeUnpubAffil (
      |             ^~~~~~~~~~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
In function ‘sprintf’,
    inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1626:9:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
In function ‘sprintf’,
    inlined from ‘HandleMultipleRecords.constprop’ at asn2gb.c:1628:9:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: warning: ‘%s’ directive argument is null [-Wformat-overflow=]
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c: In function ‘HandleMultipleRecords.constprop’:
asn2gb.c:1250:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
 1250 |       sprintf (cmmd, "./oldasn2gb -f p -i %s -o %s", path3, path1);
      |                                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1253:43: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 236 [-Wformat-overflow=]
 1253 |       sprintf (cmmd, "./newasn2gb -f p -i %s -o %s", path3, path2);
      |                                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 25 and 8215 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1242:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=]
 1242 |       sprintf (cmmd, "./oldasn2gb -i %s -o %s", path3, path1);
      |                                      ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1245:38: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 241 [-Wformat-overflow=]
 1245 |       sprintf (cmmd, "./newasn2gb -i %s -o %s", path3, path2);
      |                                      ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 20 and 8210 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1258:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 248 [-Wformat-overflow=]
 1258 |     sprintf (cmmd, "diff -b %s %s > %s", path1, path2, path3);
      |                             ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                             ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1268:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 252 [-Wformat-overflow=]
 1268 |       sprintf (cmmd, "cat %s", path3);
      |                           ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 4100 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1216:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 124 and 251 [-Wformat-overflow=]
 1216 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8327) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1184:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 124 and 251 [-Wformat-overflow=]
 1184 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path1);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8327) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1191:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 124 and 251 [-Wformat-overflow=]
 1191 |     sprintf (cmmd, "%s %s -i %s -o %s", asn2flat, arguments, path3, path2);
      |                              ^~
......
 1661 |           CompareFlatFiles (path1, path2, path3, sep, ofp,
      |                                           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8327) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2gb.c:1747:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 253 [-Wformat-overflow=]
 1747 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2gb.c:41:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o tbl2asn -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF tbl2asn.c -lncbitool -lblastcompadj \
    -lncbiobj -lnetcli -lconnssl -lncbi  -lm
tbl2asn.c:45:36: warning: macro "__DATE__" might prevent reproducible builds [-Wdate-time]
   45 | static char *date_of_compilation = __DATE__;
      |                                    ^~~~~~~~
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
tbl2asn.c: In function ‘HasTaxon’:
tbl2asn.c:872:11: warning: comparison between pointer and zero character constant [-Wpointer-compare]
  872 |   if (orp == FALSE) return FALSE;
      |           ^~
tbl2asn.c:872:7: note: did you mean to dereference the pointer?
  872 |   if (orp == FALSE) return FALSE;
      |       ^
tbl2asn.c: In function ‘ProcessOneAnnot’:
tbl2asn.c:2566:15: warning: variable ‘sep’ set but not used [-Wunused-but-set-variable]
 2566 |   SeqEntryPtr sep;
      |               ^~~
tbl2asn.c: In function ‘WarnAboutIncompleteFileRead’:
tbl2asn.c:4297:16: warning: variable ‘str’ set but not used [-Wunused-but-set-variable]
 4297 |   CharPtr      str;
      |                ^~~
tbl2asn.c: In function ‘MakeOneRnaTitle’:
tbl2asn.c:5536:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable]
 5536 |   SeqFeatPtr         cds;
      |                      ^~~
tbl2asn.c: In function ‘FindSingleNucleotideOrNucProtSetInBioseqInSet’:
tbl2asn.c:6986:30: warning: variable ‘single_result’ set but not used [-Wunused-but-set-variable]
 6986 |   SeqEntryPtr single = NULL, single_result;
      |                              ^~~~~~~~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr.h:266,
                 from ../include/aliparse.h:15,
                 from tbl2asn.c:66:
tbl2asn.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
In file included from ../include/tax3api.h:51,
                 from tbl2asn.c:69:
../include/objtax3.h:183:31: warning: ‘Value_valueFree’ declared ‘static’ but never defined [-Wunused-function]
  183 | static Value_valuePtr LIBCALL Value_valueFree PROTO ((Value_valuePtr ));
      |                               ^~~~~~~~~~~~~~~
../include/objtax3.h:184:31: warning: ‘Value_valueAsnRead’ declared ‘static’ but never defined [-Wunused-function]
  184 | static Value_valuePtr LIBCALL Value_valueAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                               ^~~~~~~~~~~~~~~~~~
../include/objtax3.h:185:24: warning: ‘Value_valueAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
  185 | static Boolean LIBCALL Value_valueAsnWrite PROTO (( Value_valuePtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~~~~~
tbl2asn.c:6580:16: warning: ‘ValidateAssemblyGapFeat’ defined but not used [-Wunused-function]
 6580 | static Boolean ValidateAssemblyGapFeat (SeqFeatPtr sfp, BioseqPtr bsp)
      |                ^~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:6005:20: warning: ‘GetDescriptorTypeAlreadyInList’ defined but not used [-Wunused-function]
 6005 | static SeqDescrPtr GetDescriptorTypeAlreadyInList (
      |                    ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:5901:13: warning: ‘ParseOneOrgLabel’ defined but not used [-Wunused-function]
 5901 | static void ParseOneOrgLabel (
      |             ^~~~~~~~~~~~~~~~
tbl2asn.c:2654:16: warning: ‘ExceptionExplainsMismatch’ defined but not used [-Wunused-function]
 2654 | static Boolean ExceptionExplainsMismatch (CharPtr except_text)
      |                ^~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c: In function ‘MakeNucProtCDS’:
tbl2asn.c:4960:28: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=]
 4960 |         sprintf (lcl, "lcl|%s", id);
      |                            ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
tbl2asn.c:4945:26: warning: ‘%s’ directive writing up to 63 bytes into a region of size 60 [-Wformat-overflow=]
 4945 |       sprintf (lcl, "lcl|%s", id);
      |                          ^~   ~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from tbl2asn.c:47:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 5 and 68 bytes into a destination of size 64
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o gene2xml -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF gene2xml.c -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gene2xml.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
gene2xml.c: In function ‘ProcessOneRecord’:
gene2xml.c:364:9: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
  364 |         system (cmmd);
      |         ^~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o entrez2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF entrez2.c -lncbiid1 -lnetcli -lncbidesk \
	-lblastapi -lblast -lncbimmdb -lncbitool -lblastcompadj \
	-lncbiobj -lvibrant -lconnssl -lncbi \
	  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from entrez2.c:49:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
entrez2.c: In function ‘Nlm_Main’:
entrez2.c:868:12: warning: variable ‘server’ set but not used [-Wunused-but-set-variable]
  868 |   CharPtr  server = "www.ncbi.nlm.nih.gov";
      |            ^~~~~~
entrez2.c:866:12: warning: variable ‘port’ set but not used [-Wunused-but-set-variable]
  866 |   Uint2    port = 2441;
      |            ^~~~
entrez2.c:865:12: warning: variable ‘path’ set but not used [-Wunused-but-set-variable]
  865 |   CharPtr  path = "/entrez/utils/entrez2server.fcgi";
      |            ^~~~
At top level:
entrez2.c:726:13: warning: ‘AboutProc’ defined but not used [-Wunused-function]
  726 | static void AboutProc (IteM i)
      |             ^~~~~~~~~
: entrez2
s390x-linux-gnu-gcc -g -o gbseqget -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF gbseqget.c -lncbiid1 -lnetcli \
	-lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from gbseqget.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -g -o asn2all -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2all.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2all.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2all.c: In function ‘DoLockFarComponents’:
asn2all.c:68:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
   68 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asn2all.c:68:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
   68 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
s390x-linux-gnu-gcc -o asn2asn -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2asn.c -lncbiid1 -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/asn.h:54,
                 from ../include/objsset.h:48,
                 from ../include/sequtil.h:43,
                 from ../include/seqport.h:47,
                 from asn2asn.c:17:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -g -o asn2fsa -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asn2fsa.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asn2fsa.c: In function ‘AddBspToList’:
asn2fsa.c:217:15: warning: variable ‘vnp’ set but not used [-Wunused-but-set-variable]
  217 |   ValNodePtr  vnp;
      |               ^~~
asn2fsa.c: In function ‘DoLockFarComponents’:
asn2fsa.c:408:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
  408 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asn2fsa.c:408:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
  408 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
asn2fsa.c: In function ‘ProcessMultipleRecord’:
asn2fsa.c:793:32: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 251 [-Wformat-overflow=]
  793 |           sprintf (cmmd, "zcat %s", path);
      |                                ^~   ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 6 and 4101 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2fsa.c:786:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 250 [-Wformat-overflow=]
  786 |         sprintf (cmmd, "gzcat %s", path);
      |                               ^~   ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 7 and 4102 bytes into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
asn2fsa.c:782:26: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 255 [-Wformat-overflow=]
  782 |       sprintf (cmmd, "%s %s", gzcatprog, path);
      |                          ^~              ~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from asn2fsa.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 2 or more bytes (assuming 4097) into a destination of size 256
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o asndisc -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asndisc.c ncbithr.o -lncbiid1 \
	-lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm -lpthread
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asndisc.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asndisc.c: In function ‘ProcessMultipleRecord’:
asndisc.c:735:19: warning: variable ‘memory_usage’ set but not used [-Wunused-but-set-variable]
  735 |   Boolean         memory_usage = FALSE;
      |                   ^~~~~~~~~~~~
asndisc.c:733:19: warning: variable ‘detailed_report’ set but not used [-Wunused-but-set-variable]
  733 |   Boolean         detailed_report = FALSE;
      |                   ^~~~~~~~~~~~~~~
asndisc.c:729:19: warning: variable ‘subcit’ set but not used [-Wunused-but-set-variable]
  729 |   SeqDescrPtr     subcit = NULL;
      |                   ^~~~~~
s390x-linux-gnu-gcc -o asnmacro -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asnmacro.c -lblastapi -lblast -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnmacro.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from asnmacro.c:54:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
asnmacro.c:147:20: warning: ‘GlobalAlign2Seq’ defined but not used [-Wunused-function]
  147 | static SeqAlignPtr GlobalAlign2Seq (BioseqPtr bsp1, BioseqPtr bsp2, BoolPtr revcomp)
      |                    ^~~~~~~~~~~~~~~
In file included from asnmacro.c:57:
../include/asnmacro.h:1376:21: warning: ‘amp’ defined but not used [-Wunused-variable]
 1376 | static AsnModulePtr amp = ampx;
      |                     ^~~
../include/asnmacro.h:1375:19: warning: ‘at’ defined but not used [-Wunused-variable]
 1375 | static AsnTypePtr at = atx;
      |                   ^~
../include/asnmacro.h:1374:23: warning: ‘avn’ defined but not used [-Wunused-variable]
 1374 | static AsnValxNodePtr avn = avnx;
      |                       ^~~
../include/asnmacro.h:12:15: warning: ‘asnfilename’ defined but not used [-Wunused-variable]
   12 | static char * asnfilename = "asnmacro.h11";
      |               ^~~~~~~~~~~
asnmacro.c: In function ‘AsnIoFromOutputStream’:
asnmacro.c:233:14: warning: ‘aip’ may be used uninitialized in this function [-Wmaybe-uninitialized]
  233 |   AsnIoPtr   aip;
      |              ^~~
s390x-linux-gnu-gcc -g -o asnval -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF asnval.c ncbithr.o -lncbiid1 \
    -lnetcli -lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
     -lm -lpthread
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from asnval.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
asnval.c: In function ‘DoLockFarComponents’:
asnval.c:558:27: warning: variable ‘stop_time’ set but not used [-Wunused-but-set-variable]
  558 |   time_t      start_time, stop_time;
      |                           ^~~~~~~~~
asnval.c:558:15: warning: variable ‘start_time’ set but not used [-Wunused-but-set-variable]
  558 |   time_t      start_time, stop_time;
      |               ^~~~~~~~~~
s390x-linux-gnu-gcc -o cleanasn -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF cleanasn.c -lblastapi -lblast -lncbiid1 \
    -lncbitool -lblastcompadj -lnetcli -lncbiobj -lconnssl -lncbi \
     -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cleanasn.c: In function ‘FindISOJTA’:
cleanasn.c:2186:17: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable]
 2186 |   Boolean       is_issn = FALSE;
      |                 ^~~~~~~
cleanasn.c: In function ‘JournalIsPresent’:
cleanasn.c:10641:14: warning: variable ‘is_issn’ set but not used [-Wunused-but-set-variable]
10641 |   Boolean    is_issn = FALSE;
      |              ^~~~~~~
cleanasn.c: In function ‘RemoveGIProc’:
cleanasn.c:10946:18: warning: variable ‘nextid’ set but not used [-Wunused-but-set-variable]
10946 |   SeqIdPtr       nextid, sip;
      |                  ^~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/actutils.h:105,
                 from cleanasn.c:66:
cleanasn.c: At top level:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
cleanasn.c: In function ‘ReportAsnDiffs’:
cleanasn.c:3907:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 3907 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c: In function ‘DoGBFFReport’:
cleanasn.c:8330:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8330 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8333:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8333 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8359:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8359 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8388:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8388 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8446:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8446 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c:8449:5: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8449 |     system (cmmd);
      |     ^~~~~~~~~~~~~
cleanasn.c: In function ‘DoValidatorReport’:
cleanasn.c:8505:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8505 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:8508:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8508 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:8536:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
 8536 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c: In function ‘CppBasicCleanup’:
cleanasn.c:11556:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11556 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:11560:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11560 |   system (cmmd);
      |   ^~~~~~~~~~~~~
cleanasn.c:11586:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11586 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11588:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11588 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11590:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11590 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11592:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11592 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11594:7: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11594 |       system (cmmd);
      |       ^~~~~~~~~~~~~
cleanasn.c:11604:3: warning: ignoring return value of ‘system’, declared with attribute warn_unused_result [-Wunused-result]
11604 |   system (cmmd);
      |   ^~~~~~~~~~~~~
At top level:
cleanasn.c:14106:13: warning: ‘AccessionToGi’ defined but not used [-Wunused-function]
14106 | static Int4 AccessionToGi (CharPtr string)
      |             ^~~~~~~~~~~~~
cleanasn.c:14065:16: warning: ‘PvtStrToLong’ defined but not used [-Wunused-function]
14065 | static Boolean PvtStrToLong (CharPtr str, Int4Ptr longval)
      |                ^~~~~~~~~~~~
cleanasn.c:12099:20: warning: ‘MakeVirtualProtein’ defined but not used [-Wunused-function]
12099 | static SeqEntryPtr MakeVirtualProtein (void)
      |                    ^~~~~~~~~~~~~~~~~~
cleanasn.c:10401:13: warning: ‘CheckPubmedSI’ defined but not used [-Wunused-function]
10401 | static void CheckPubmedSI (
      |             ^~~~~~~~~~~~~
cleanasn.c:10219:13: warning: ‘DoUnpublishedReport’ defined but not used [-Wunused-function]
10219 | static void DoUnpublishedReport (
      |             ^~~~~~~~~~~~~~~~~~~
cleanasn.c:9089:19: warning: ‘DuplicateStringList’ defined but not used [-Wunused-function]
 9089 | static ValNodePtr DuplicateStringList (
      |                   ^~~~~~~~~~~~~~~~~~~
cleanasn.c:6073:16: warning: ‘IsStopWord’ defined but not used [-Wunused-function]
 6073 | static Boolean IsStopWord (
      |                ^~~~~~~~~~
cleanasn.c:5235:13: warning: ‘FindOneCds’ defined but not used [-Wunused-function]
 5235 | static void FindOneCds (
      |             ^~~~~~~~~~
cleanasn.c:5214:13: warning: ‘PrintSegSeqTitleAfter’ defined but not used [-Wunused-function]
 5214 | static void PrintSegSeqTitleAfter (
      |             ^~~~~~~~~~~~~~~~~~~~~
cleanasn.c:5193:13: warning: ‘PrintSegSeqTitleBefore’ defined but not used [-Wunused-function]
 5193 | static void PrintSegSeqTitleBefore (
      |             ^~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:5178:13: warning: ‘PrintPartsTitle’ defined but not used [-Wunused-function]
 5178 | static void PrintPartsTitle (
      |             ^~~~~~~~~~~~~~~
cleanasn.c:4899:13: warning: ‘CountParts’ defined but not used [-Wunused-function]
 4899 | static void CountParts (
      |             ^~~~~~~~~~
cleanasn.c:4848:13: warning: ‘NormalizeSegSetTitle’ defined but not used [-Wunused-function]
 4848 | static void NormalizeSegSetTitle (
      |             ^~~~~~~~~~~~~~~~~~~~
cleanasn.c:1910:13: warning: ‘FindSegSeq’ defined but not used [-Wunused-function]
 1910 | static void FindSegSeq (
      |             ^~~~~~~~~~
cleanasn.c: In function ‘DoValidatorReport’:
cleanasn.c:8504:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8504 |   sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path3, path1);
      |                         ^~                                            ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8507:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8507 |   sprintf (cmmd, "%s -i %s -o stdout -Q 1 -r -l | sort > %s", asnval, path4, path2);
      |                         ^~                                            ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 36 or more bytes (assuming 8226) into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8510:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=]
 8510 |   sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path5);
      |                           ^~           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8535:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8535 |   sprintf (cmmd, "rm %s; rm %s; rm %s; rm %s; rm %s", path1, path2, path3, path4, path5);
      |                      ^~                               ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 24 and 20499 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘CppBasicCleanup’:
cleanasn.c:11553:25: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 447 [-Wformat-overflow=]
11553 |   sprintf (cmmd, "%s -i %s | cleanasn -a e -o %s",
      |                         ^~
11554 |            "~/ncbi_cxx/compilers/xCode/build/bin/Debug/test_basic_cleanup",
11555 |            path1, path2);
      |            ~~~~~         
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 86 and 8276 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11558:31: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 500 [-Wformat-overflow=]
11558 |   sprintf (cmmd, "cleanasn -i %s -o %s -K b",
      |                               ^~
11559 |            path1, path3);
      |            ~~~~~               
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 22 and 8212 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11593:28: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 507 [-Wformat-overflow=]
11593 |       sprintf (cmmd, "diff %s %s >> ~/Desktop/diffclean.txt", path3, path2);
      |                            ^~                                 ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 34 and 8224 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:11603:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
11603 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘DoGBFFReport’:
cleanasn.c:8445:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8445 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                           ^~                            ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 8212) into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8448:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8448 |     sprintf (cmmd, "rm %s; rm %s", path1, path2);
      |                        ^~          ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8358:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size between 380 and 507 [-Wformat-overflow=]
 8358 |     sprintf (cmmd, "%s %s -i %s -o %s", cfp->asn2flat, arguments, path3, path2);
      |                              ^~                                   ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 10 or more bytes (assuming 8327) into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8361:29: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 504 [-Wformat-overflow=]
 8361 |     sprintf (cmmd, "diff -h %s %s > %s", path1, path2, path3);
      |                             ^~           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 13 and 12298 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8387:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8387 |     sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                        ^~                 ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8329:27: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 508 [-Wformat-overflow=]
 8329 |     sprintf (cmmd, "%s -o %s -n %s -d %s", cfp->ffdiff, path1, path2, rep);
      |                           ^~                            ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output 20 or more bytes (assuming 8212) into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:8332:24: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 8332 |     sprintf (cmmd, "rm %s; rm %s", path1, path2);
      |                        ^~          ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 9 and 8199 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c: In function ‘ReportAsnDiffs’:
cleanasn.c:3872:30: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 501 [-Wformat-overflow=]
 3872 |   sprintf (cmmd, "diff -b -h %s %s > %s", path1, path2, path3);
      |                              ^~           ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 16 and 12301 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
cleanasn.c:3906:22: warning: ‘%s’ directive writing up to 4095 bytes into a region of size 509 [-Wformat-overflow=]
 3906 |   sprintf (cmmd, "rm %s; rm %s; rm %s", path1, path2, path3);
      |                      ^~                 ~~~~~
In file included from /usr/s390x-linux-gnu/include/stdio.h:867,
                 from ../include/ncbilcl.h:154,
                 from ../include/ncbi.h:57,
                 from cleanasn.c:45:
/usr/s390x-linux-gnu/include/bits/stdio2.h:36:10: note: ‘__builtin___sprintf_chk’ output between 14 and 12299 bytes into a destination of size 512
   36 |   return __builtin___sprintf_chk (__s, __USE_FORTIFY_LEVEL - 1,
      |          ^~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
   37 |       __bos (__s), __fmt, __va_arg_pack ());
      |       ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o insdseqget -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF insdseqget.c -lncbiid1 -lnetcli \
	-lncbitool -lblastcompadj -lncbiobj -lconnssl -lncbi \
	 -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from insdseqget.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -g -o nps2gps -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF nps2gps.c -lncbitool -lblastcompadj \
	-lncbiobj -lconnssl -lncbi  -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from nps2gps.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
nps2gps.c: In function ‘LclMakeOneRnaTitle’:
nps2gps.c:422:22: warning: variable ‘cds’ set but not used [-Wunused-but-set-variable]
  422 |   SeqFeatPtr         cds;
      |                      ^~~
nps2gps.c: In function ‘MakeIdFromLocation’:
nps2gps.c:706:16: warning: variable ‘altid’ set but not used [-Wunused-but-set-variable]
  706 |     ValNodePtr altid;
      |                ^~~~~
nps2gps.c: In function ‘LoopThroughCDSs’:
nps2gps.c:1221:22: warning: variable ‘count’ set but not used [-Wunused-but-set-variable]
 1221 |   Int2               count;
      |                      ^~~~~
nps2gps.c: In function ‘NPStoGPS’:
nps2gps.c:1891:39: warning: variable ‘lastmrna’ set but not used [-Wunused-but-set-variable]
 1891 |   SeqFeatPtr         cds, gene, mrna, lastmrna, sfp, lastsfp;
      |                                       ^~~~~~~~
At top level:
nps2gps.c:589:17: warning: ‘MakeIdFromLocusTag’ defined but not used [-Wunused-function]
  589 | static SeqIdPtr MakeIdFromLocusTag (
      |                 ^~~~~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -o spidey -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF spideymain.c -lncbiid1 -lncbitool \
	-lblastcompadj -lnetcli -lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from spideymain.c:79:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
In file included from ../include/samutil.h:234,
                 from ../include/alignmgr2.h:114,
                 from ../include/spidey.h:103,
                 from spideymain.c:80:
../include/objalignloc.h:80:27: warning: ‘Loc_locFree’ declared ‘static’ but never defined [-Wunused-function]
   80 | static Loc_locPtr LIBCALL Loc_locFree PROTO ((Loc_locPtr ));
      |                           ^~~~~~~~~~~
../include/objalignloc.h:81:27: warning: ‘Loc_locAsnRead’ declared ‘static’ but never defined [-Wunused-function]
   81 | static Loc_locPtr LIBCALL Loc_locAsnRead PROTO (( AsnIoPtr, AsnTypePtr));
      |                           ^~~~~~~~~~~~~~
../include/objalignloc.h:82:24: warning: ‘Loc_locAsnWrite’ declared ‘static’ but never defined [-Wunused-function]
   82 | static Boolean LIBCALL Loc_locAsnWrite PROTO (( Loc_locPtr , AsnIoPtr, AsnTypePtr));
      |                        ^~~~~~~~~~~~~~~
s390x-linux-gnu-gcc -g -o trna2sap -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF trna2sap.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from trna2sap.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
trna2sap.c: In function ‘ProcessOneRecord’:
trna2sap.c:290:28: warning: unused variable ‘entityID’ [-Wunused-variable]
  290 |   Uint2          datatype, entityID = 0;
      |                            ^~~~~~~~
trna2sap.c: In function ‘Nlm_Main’:
trna2sap.c:460:12: warning: variable ‘tsp’ set but not used [-Wunused-but-set-variable]
  460 |   T2SPtr   tsp;
      |            ^~~
s390x-linux-gnu-gcc -g -o trna2tbl -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF trna2tbl.c -lncbitool -lblastcompadj \
	-lncbiobj -lncbi -lm
trna2tbl.c: In function ‘RunTrnaScan’:
trna2tbl.c:142:13: warning: unused variable ‘str’ [-Wunused-variable]
  142 |   Char      str [80];
      |             ^~~
trna2tbl.c:139:13: warning: unused variable ‘speed’ [-Wunused-variable]
  139 |   CharPtr   speed;
      |             ^~~~~
trna2tbl.c:127:13: warning: unused variable ‘cmmd’ [-Wunused-variable]
  127 |   Char      cmmd [256];
      |             ^~~~
trna2tbl.c: At top level:
trna2tbl.c:232:1: warning: return type defaults to ‘int’ [-Wimplicit-int]
  232 | main (int argc, char *argv[])
      | ^~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" cn3dmain.c
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from cn3dmain.c:210:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
cn3dmain.c: In function ‘OpenMimeFile’:
cn3dmain.c:237:5: warning: "/*" within comment [-Wcomment]
  237 |     /* the Web browsers on other platforms get upset if you delete the file, */
      |      
cn3dmain.c: In function ‘NetConfigureProc’:
cn3dmain.c:267:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable]
  267 |     Boolean netCurrentlyOn = FALSE;
      |             ^~~~~~~~~~~~~~
cn3dmain.c: In function ‘Cn3D_PrintImage’:
cn3dmain.c:288:10: warning: variable ‘pmldVec’ set but not used [-Wunused-but-set-variable]
  288 |     PMLD pmldVec = NULL;
      |          ^~~~~~~
cn3dmain.c:284:11: warning: unused variable ‘pdnmlFirst’ [-Wunused-variable]
  284 |     PDNML pdnmlFirst = NULL;
      |           ^~~~~~~~~~
cn3dmain.c: In function ‘Nlm_Main’:
cn3dmain.c:334:13: warning: unused variable ‘netCurrentlyOn’ [-Wunused-variable]
  334 |     Boolean netCurrentlyOn = FALSE;
      |             ^~~~~~~~~~~~~~
At top level:
cn3dmain.c:246:25: warning: ‘seqedprocs’ defined but not used [-Wunused-variable]
  246 | static SeqEditViewProcs seqedprocs;
      |                         ^~~~~~~~~~
s390x-linux-gnu-gcc -c -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -I../include -DWIN_MOTIF -DNETENTREZVERSION="\"2.02c2ASN1SPEC6 \"" -Wdate-time -D_FORTIFY_SOURCE=2 -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF  netentcf.c   -o netentcf
In file included from /usr/s390x-linux-gnu/include/sys/types.h:25,
                 from ../include/ncbilcl.h:150,
                 from ../include/ncbi.h:57,
                 from ../include/vibtypes.h:94,
                 from ../include/vibrant.h:124,
                 from netentcf.c:41:
/usr/s390x-linux-gnu/include/features.h:185:3: warning: #warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE" [-Wcpp]
  185 | # warning "_BSD_SOURCE and _SVID_SOURCE are deprecated, use _DEFAULT_SOURCE"
      |   ^~~~~~~
s390x-linux-gnu-gcc -o Cn3D -g -O2 -fdebug-prefix-map=/<<PKGBUILDDIR>>=. -fstack-protector-strong -Wformat -Werror=format-security -Wall -Wdate-time -D_FORTIFY_SOURCE=2 -Wl,-z,relro -Wl,-z,now -Wl,--as-needed -Wl,-rpath-link,../shlib -I../include  -L../shlib -DWIN_MOTIF cn3dmain.o -lvibnet -lncbicn3dOGL -lncbidesk \
	-lddvlib -lncbimmdb -lncbiNacc -lnetentr \
	-lvibrantOGL -lncbiobj -lncbi  
make[2]: Leaving directory '/<<PKGBUILDDIR>>/build'
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   create-stamp debian/debhelper-build-stamp
   dh_testroot -a
   dh_prep -a
   debian/rules override_dh_auto_install-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
install -d debian/tmp/usr/lib/s390x-linux-gnu
install -m 644 lib/* shlib/*.so.6.1.20170106 debian/tmp/usr/lib/s390x-linux-gnu
for x in ncbiacc ncbiCacc netentr; do \
    rm -f debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so.6.1.20170106 && \
    ln -s libncbiNacc.so.6 \
        debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so.6 && \
    ln -s libncbiNacc.so debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so; \
done
for x in ncbicn3d vibrant; do \
    rm -f debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so.6.1.20170106 && \
    ln -s lib${x}OGL.so.6 \
        debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so.6 && \
    ln -s lib${x}OGL.so debian/tmp/usr/lib/s390x-linux-gnu/lib$x.so; \
done
rm -f debian/tmp/usr/lib/s390x-linux-gnu/libregexp.*
cd debian/tmp/usr/lib/s390x-linux-gnu && \
for f in *.so.6.1.20170106; do \
    base=`basename $f .so.6.1.20170106` && \
    ln -s $f $base.so.6 && \
    ln -s $f $base.so; \
done
install -d debian/tmp/usr/include/ncbi
cp -LRp include/* debian/tmp/usr/include/ncbi
cd debian/tmp/usr/include/ncbi && \
            rm -f FSpCompat.h FullPath.h More*.h Optimization*.h pcre*.h
find debian/tmp/usr/include -type f | xargs chmod 644
install -d debian/tmp/usr/bin
install `find build -type f -perm /111 -print` debian/tmp/usr/bin
rm -f debian/tmp/usr/bin/*test*
rm -f debian/tmp/usr/bin/*demo*
rm -f debian/tmp/usr/bin/dosimple
rm -f debian/tmp/usr/bin/ncbisort
rm -f debian/tmp/usr/bin/cdscan
rm -f debian/tmp/usr/bin/entrcmd
mv debian/tmp/usr/bin/Cn3D debian/tmp/usr/bin/Cn3D-3.0
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_install -a
   debian/rules override_dh_installdocs-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installdocs
install -m 644 config/README \
    debian/libncbi6/usr/share/doc/libncbi6/README.config
install -m 644 network/nsclilib/readme \
    debian/libncbi6/usr/share/doc/libncbi6/README.net-cfg
install -m 644 doc/fa2htgs/README \
    debian/ncbi-tools-bin/usr/share/doc/ncbi-tools-bin/README.fa2htgs
install -m 644 sequin/README \
    debian/ncbi-tools-x11/usr/share/doc/ncbi-tools-x11/README.sequin
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installchangelogs
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_installchangelogs -k README
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installexamples -a
   debian/rules override_dh_installman
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_link # otherwise runs too late to influence debian/installman
chmod +x debian/installman
debian/installman ncbi-cn3d
debian/installman ncbi-tools-bin
debian/installman ncbi-tools-x11
dh_installman
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   debian/rules override_dh_installmenu-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
chmod +x debian/makemenu
debian/makemenu debian/ncbi-cn3d.install
debian/makemenu debian/ncbi-tools-x11.install
dh_installmenu
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_installmime -a
   dh_lintian -a
   dh_perl -a
   dh_link -a
   dh_strip_nondeterminism -a
   dh_compress -a
   dh_fixperms -a
   dh_missing -a
   dh_strip -a
   debian/rules override_dh_makeshlibs-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_makeshlibs -V
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_shlibdeps -a
   dh_installdeb -a
   debian/rules override_dh_gencontrol-arch
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_gencontrol  -pncbi-cn3d -- -v3.0.20170106+dfsg1-7
dh_gencontrol  -Nncbi-cn3d
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
   dh_md5sums -a
   debian/rules override_dh_builddeb
make[1]: Entering directory '/<<PKGBUILDDIR>>'
dh_builddeb -pncbi-rrna-data -- -Zxz -z7 -Sextreme
dh_builddeb: All requested packages have been excluded (e.g. via a Build-Profile or due to architecture restrictions).
dh_builddeb -Nncbi-rrna-data
dpkg-deb: building package 'libncbi6' in '../libncbi6_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'libncbi6-dbgsym' in '../libncbi6-dbgsym_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'libncbi6-dev' in '../libncbi6-dev_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-tools-bin' in '../ncbi-tools-bin_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-tools-bin-dbgsym' in '../ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-tools-x11' in '../ncbi-tools-x11_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-tools-x11-dbgsym' in '../ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-cn3d' in '../ncbi-cn3d_3.0.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'ncbi-cn3d-dbgsym' in '../ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'libvibrant6b' in '../libvibrant6b_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'libvibrant6b-dbgsym' in '../libvibrant6b-dbgsym_6.1.20170106+dfsg1-7_s390x.deb'.
dpkg-deb: building package 'libvibrant6-dev' in '../libvibrant6-dev_6.1.20170106+dfsg1-7_s390x.deb'.
make[1]: Leaving directory '/<<PKGBUILDDIR>>'
 dpkg-genbuildinfo --build=any
 dpkg-genchanges --build=any >../ncbi-tools6_6.1.20170106+dfsg1-7_s390x.changes
dpkg-genchanges: info: binary-only arch-specific upload (source code and arch-indep packages not included)
 dpkg-source --after-build .
dpkg-source: info: using options from ncbi-tools6-6.1.20170106+dfsg1/debian/source/options: --single-debian-patch
dpkg-buildpackage: info: binary-only upload (no source included)
--------------------------------------------------------------------------------
Build finished at 2019-09-15T13:59:58Z

Finished
--------

I: Built successfully

+------------------------------------------------------------------------------+
| Changes                                                                      |
+------------------------------------------------------------------------------+


ncbi-tools6_6.1.20170106+dfsg1-7_s390x.changes:
-----------------------------------------------

Format: 1.8
Date: Sat, 14 Sep 2019 20:53:39 -0400
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dbgsym libncbi6-dev libvibrant6-dev libvibrant6b libvibrant6b-dbgsym ncbi-cn3d ncbi-cn3d-dbgsym ncbi-tools-bin ncbi-tools-bin-dbgsym ncbi-tools-x11 ncbi-tools-x11-dbgsym
Built-For-Profiles: cross nocheck
Architecture: s390x
Version: 6.1.20170106+dfsg1-7
Distribution: unstable
Urgency: medium
Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
Changed-By: Aaron M. Ucko <ucko@debian.org>
Description:
 libncbi6   - NCBI libraries for biology applications
 libncbi6-dev - NCBI libraries for biology applications (development files)
 libvibrant6-dev - NCBI libraries for graphic biology applications (development file
 libvibrant6b - NCBI libraries for graphic biology applications
 ncbi-cn3d  - 3-dimensional viewer for biological molecules
 ncbi-tools-bin - NCBI libraries for biology applications (text-based utilities)
 ncbi-tools-x11 - NCBI libraries for biology applications (X-based utilities)
Closes: 940210
Changes:
 ncbi-tools6 (6.1.20170106+dfsg1-7) unstable; urgency=medium
 .
   * debian/control: Broaden ncbi-cn3d Breaks/Replaces on ncbi-tools-x11 to
     (<= 6.1.20170106+dfsg1-5~) per delayed split.  (Closes: #940210.)
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+------------------------------------------------------------------------------+
| Buildinfo                                                                    |
+------------------------------------------------------------------------------+

Format: 1.0
Source: ncbi-tools6
Binary: libncbi6 libncbi6-dev ncbi-data ncbi-rrna-data ncbi-tools-bin ncbi-tools-x11 ncbi-cn3d libvibrant6b libvibrant6-dev
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 d2ba1635c3463eeb9b91b052f93c7a6c0490e631df07ea1bb0566748a29b766c 1161124 libvibrant6b_6.1.20170106+dfsg1-7_s390x.deb
 9b8cd54359ea8e81c4472f232a9ed54f2cf6224a46585cf908e84de8ea26c455 22488 ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-7_s390x.deb
 be2d0461f0c2e02330eb85a161f738842e037d691c1008755f0e7e33e87592bb 46928 ncbi-cn3d_3.0.20170106+dfsg1-7_s390x.deb
 7d26cad90fdeb25a646de2d19069d7cd12890d4bed4d47017691ad7ff7a7721a 1393196 ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
 3d79b59b6b3cd3e129db790aa89813f3fa2cf3e91ec30046c754cf8bab9f0ec0 1904784 ncbi-tools-bin_6.1.20170106+dfsg1-7_s390x.deb
 b371c6491d9fa98ed9b7f3e2b16ea111d869de052f9a5db36957cab498221b4f 2919328 ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
 b9fd55e0cdd0f83a11013a0d718a117f7b829f6538cd61d0f24fc4951819b7bb 1046612 ncbi-tools-x11_6.1.20170106+dfsg1-7_s390x.deb
Build-Origin: Debian
Build-Architecture: amd64
Build-Date: Sun, 15 Sep 2019 13:59:57 +0000
Build-Path: /<<PKGBUILDDIR>>
Installed-Build-Depends:
 autoconf (= 2.69-11),
 automake (= 1:1.16.1-4),
 autopoint (= 0.19.8.1-9),
 autotools-dev (= 20180224.1),
 base-files (= 11),
 base-passwd (= 3.5.46),
 bash (= 5.0-4),
 binutils (= 2.32.51.20190909-1),
 binutils-common (= 2.32.51.20190909-1),
 binutils-x86-64-linux-gnu (= 2.32.51.20190909-1),
 bsdmainutils (= 11.1.2+b1),
 bsdutils (= 1:2.34-0.1),
 build-essential (= 12.8),
 bzip2 (= 1.0.8-2),
 coreutils (= 8.30-3+b1),
 cpp (= 4:9.2.1-3.1),
 cpp-8 (= 8.3.0-22),
 cpp-9 (= 9.2.1-8),
 csh (= 20110502-4+b1),
 dash (= 0.5.10.2-6),
 debconf (= 1.5.73),
 debhelper (= 12.5.4),
 debianutils (= 4.9),
 dh-autoreconf (= 19),
 dh-strip-nondeterminism (= 1.6.0-1),
 diffutils (= 1:3.7-3),
 dpkg (= 1.19.7),
 dpkg-dev (= 1.19.7),
 dwz (= 0.13-1),
 fdisk (= 2.34-0.1),
 file (= 1:5.37-5),
 findutils (= 4.7.0-1),
 fontconfig-config (= 2.13.1-2),
 fonts-dejavu-core (= 2.37-1),
 g++ (= 4:9.2.1-3.1),
 g++-9 (= 9.2.1-8),
 gcc (= 4:9.2.1-3.1),
 gcc-8 (= 8.3.0-22),
 gcc-8-base (= 8.3.0-22),
 gcc-9 (= 9.2.1-8),
 gcc-9-base (= 9.2.1-8),
 gettext (= 0.19.8.1-9),
 gettext-base (= 0.19.8.1-9),
 grep (= 3.3-1),
 groff-base (= 1.22.4-3),
 gzip (= 1.9-3+b1),
 hostname (= 3.22+b1),
 init-system-helpers (= 1.57),
 intltool-debian (= 0.35.0+20060710.5),
 libacl1 (= 2.2.53-4),
 libarchive-zip-perl (= 1.65-1),
 libasan5 (= 9.2.1-8),
 libatomic1 (= 9.2.1-8),
 libattr1 (= 1:2.4.48-4),
 libaudit-common (= 1:2.8.5-2),
 libaudit1 (= 1:2.8.5-2),
 libbinutils (= 2.32.51.20190909-1),
 libblkid1 (= 2.34-0.1),
 libbsd0 (= 0.10.0-1),
 libbz2-1.0 (= 1.0.8-2),
 libc-bin (= 2.29-1),
 libc-dev-bin (= 2.29-1),
 libc6 (= 2.29-1),
 libc6-dev (= 2.29-1),
 libcap-ng0 (= 0.7.9-2+b1),
 libcc1-0 (= 9.2.1-8),
 libcroco3 (= 0.6.13-1),
 libdb5.3 (= 5.3.28+dfsg1-0.6),
 libdebconfclient0 (= 0.249),
 libdpkg-perl (= 1.19.7),
 libdrm-amdgpu1 (= 2.4.99-1),
 libdrm-common (= 2.4.99-1),
 libdrm-dev (= 2.4.99-1),
 libdrm-nouveau2 (= 2.4.99-1),
 libdrm-radeon1 (= 2.4.99-1),
 libdrm2 (= 2.4.99-1),
 libedit2 (= 3.1-20190324-1),
 libegl-mesa0 (= 19.1.6-1),
 libegl1 (= 1.1.0-1+b1),
 libelf1 (= 0.176-1.1),
 libevent-2.1-6 (= 2.1.8-stable-4),
 libexpat1 (= 2.2.7-2),
 libexpat1-dev (= 2.2.7-2),
 libfdisk1 (= 2.34-0.1),
 libffi6 (= 3.2.1-9),
 libfile-stripnondeterminism-perl (= 1.6.0-1),
 libfontconfig1 (= 2.13.1-2+b1),
 libfontconfig1-dev (= 2.13.1-2+b1),
 libfreetype6 (= 2.9.1-4),
 libfreetype6-dev (= 2.9.1-4),
 libgbm1 (= 19.1.6-1),
 libgcc-8-dev (= 8.3.0-22),
 libgcc-9-dev (= 9.2.1-8),
 libgcc1 (= 1:9.2.1-8),
 libgcrypt20 (= 1.8.5-2),
 libgdbm-compat4 (= 1.18.1-5),
 libgdbm6 (= 1.18.1-5),
 libgl1 (= 1.1.0-1+b1),
 libgl1-mesa-dev (= 19.1.6-1),
 libgl1-mesa-dri (= 19.1.6-1),
 libglapi-mesa (= 19.1.6-1),
 libgles1 (= 1.1.0-1+b1),
 libgles2 (= 1.1.0-1+b1),
 libglib2.0-0 (= 2.60.6-2),
 libglu1-mesa (= 9.0.0-2.1+b3),
 libglu1-mesa-dev (= 9.0.0-2.1+b3),
 libglvnd-core-dev (= 1.1.0-1+b1),
 libglvnd-dev (= 1.1.0-1+b1),
 libglvnd0 (= 1.1.0-1+b1),
 libglx-mesa0 (= 19.1.6-1),
 libglx0 (= 1.1.0-1+b1),
 libgmp-dev (= 2:6.1.2+dfsg-4),
 libgmp10 (= 2:6.1.2+dfsg-4),
 libgmpxx4ldbl (= 2:6.1.2+dfsg-4),
 libgnutls-dane0 (= 3.6.9-5),
 libgnutls-openssl27 (= 3.6.9-5),
 libgnutls28-dev (= 3.6.9-5),
 libgnutls30 (= 3.6.9-5),
 libgnutlsxx28 (= 3.6.9-5),
 libgomp1 (= 9.2.1-8),
 libgpg-error0 (= 1.36-7),
 libhogweed4 (= 3.5.1+really3.4.1-1),
 libice-dev (= 2:1.0.9-2),
 libice6 (= 2:1.0.9-2),
 libicu63 (= 63.2-2),
 libidn2-0 (= 2.2.0-2),
 libidn2-dev (= 2.2.0-2),
 libisl21 (= 0.21-2),
 libitm1 (= 9.2.1-8),
 libjpeg62-turbo (= 1:1.5.2-2+b1),
 libllvm8 (= 1:8.0.1-3+b1),
 liblsan0 (= 9.2.1-8),
 liblz4-1 (= 1.8.3-1+b1),
 liblzma5 (= 5.2.4-1+b1),
 libmagic-mgc (= 1:5.37-5),
 libmagic1 (= 1:5.37-5),
 libmotif-common (= 2.3.8-2),
 libmotif-dev (= 2.3.8-2),
 libmount1 (= 2.34-0.1),
 libmpc3 (= 1.1.0-1),
 libmpfr6 (= 4.0.2-1),
 libmpx2 (= 8.3.0-22),
 libmrm4 (= 2.3.8-2),
 libncurses6 (= 6.1+20190803-1),
 libncursesw6 (= 6.1+20190803-1),
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 libopengl0 (= 1.1.0-1+b1),
 libp11-kit-dev (= 0.23.16.1-2),
 libp11-kit0 (= 0.23.16.1-2),
 libpam-modules (= 1.3.1-5),
 libpam-modules-bin (= 1.3.1-5),
 libpam-runtime (= 1.3.1-5),
 libpam0g (= 1.3.1-5),
 libpcre16-3 (= 2:8.39-12+b1),
 libpcre2-8-0 (= 10.32-5+b1),
 libpcre3 (= 2:8.39-12+b1),
 libpcre3-dev (= 2:8.39-12+b1),
 libpcre32-3 (= 2:8.39-12+b1),
 libpcrecpp0v5 (= 2:8.39-12+b1),
 libperl5.28 (= 5.28.1-6),
 libpipeline1 (= 1.5.1-2),
 libpng-dev (= 1.6.37-1),
 libpng16-16 (= 1.6.37-1),
 libpthread-stubs0-dev (= 0.4-1),
 libquadmath0 (= 9.2.1-8),
 libseccomp2 (= 2.4.1-2),
 libselinux1 (= 2.9-2+b2),
 libsensors-config (= 1:3.5.0-3),
 libsensors5 (= 1:3.5.0-3),
 libsigsegv2 (= 2.12-2),
 libsm-dev (= 2:1.2.3-1),
 libsm6 (= 2:1.2.3-1),
 libsmartcols1 (= 2.34-0.1),
 libstdc++-9-dev (= 9.2.1-8),
 libstdc++6 (= 9.2.1-8),
 libsub-override-perl (= 0.09-2),
 libsystemd0 (= 242-7),
 libtasn1-6 (= 4.14-3),
 libtasn1-6-dev (= 4.14-3),
 libtinfo6 (= 6.1+20190803-1),
 libtool (= 2.4.6-11),
 libtsan0 (= 9.2.1-8),
 libubsan1 (= 9.2.1-8),
 libuchardet0 (= 0.0.6-3),
 libudev1 (= 242-7),
 libuil4 (= 2.3.8-2),
 libunbound8 (= 1.9.3-1+b1),
 libunistring2 (= 0.9.10-2),
 libuuid1 (= 2.34-0.1),
 libwayland-client0 (= 1.17.0-1),
 libwayland-server0 (= 1.17.0-1),
 libx11-6 (= 2:1.6.7-1),
 libx11-data (= 2:1.6.7-1),
 libx11-dev (= 2:1.6.7-1),
 libx11-xcb-dev (= 2:1.6.7-1),
 libx11-xcb1 (= 2:1.6.7-1),
 libxau-dev (= 1:1.0.8-1+b2),
 libxau6 (= 1:1.0.8-1+b2),
 libxcb-dri2-0 (= 1.13.1-2),
 libxcb-dri2-0-dev (= 1.13.1-2),
 libxcb-dri3-0 (= 1.13.1-2),
 libxcb-dri3-dev (= 1.13.1-2),
 libxcb-glx0 (= 1.13.1-2),
 libxcb-glx0-dev (= 1.13.1-2),
 libxcb-present-dev (= 1.13.1-2),
 libxcb-present0 (= 1.13.1-2),
 libxcb-randr0 (= 1.13.1-2),
 libxcb-randr0-dev (= 1.13.1-2),
 libxcb-render0 (= 1.13.1-2),
 libxcb-render0-dev (= 1.13.1-2),
 libxcb-shape0 (= 1.13.1-2),
 libxcb-shape0-dev (= 1.13.1-2),
 libxcb-sync-dev (= 1.13.1-2),
 libxcb-sync1 (= 1.13.1-2),
 libxcb-xfixes0 (= 1.13.1-2),
 libxcb-xfixes0-dev (= 1.13.1-2),
 libxcb1 (= 1.13.1-2),
 libxcb1-dev (= 1.13.1-2),
 libxdamage-dev (= 1:1.1.5-1),
 libxdamage1 (= 1:1.1.5-1),
 libxdmcp-dev (= 1:1.1.2-3),
 libxdmcp6 (= 1:1.1.2-3),
 libxext-dev (= 2:1.3.3-1+b2),
 libxext6 (= 2:1.3.3-1+b2),
 libxfixes-dev (= 1:5.0.3-1),
 libxfixes3 (= 1:5.0.3-1),
 libxft-dev (= 2.3.2-2),
 libxft2 (= 2.3.2-2),
 libxm4 (= 2.3.8-2),
 libxml2 (= 2.9.4+dfsg1-7+b3),
 libxmu-dev (= 2:1.1.2-2+b3),
 libxmu-headers (= 2:1.1.2-2),
 libxmu6 (= 2:1.1.2-2+b3),
 libxrender-dev (= 1:0.9.10-1),
 libxrender1 (= 1:0.9.10-1),
 libxshmfence-dev (= 1.3-1),
 libxshmfence1 (= 1.3-1),
 libxt-dev (= 1:1.1.5-1+b3),
 libxt6 (= 1:1.1.5-1+b3),
 libxxf86vm-dev (= 1:1.1.4-1+b2),
 libxxf86vm1 (= 1:1.1.4-1+b2),
 linux-libc-dev (= 5.2.9-2),
 login (= 1:4.7-2),
 lsb-base (= 11.1.0),
 m4 (= 1.4.18-2),
 make (= 4.2.1-1.2),
 man-db (= 2.8.7-3),
 mawk (= 1.3.3-17+b3),
 mesa-common-dev (= 19.1.6-1),
 ncurses-base (= 6.1+20190803-1),
 ncurses-bin (= 6.1+20190803-1),
 nettle-dev (= 3.5.1+really3.4.1-1),
 patch (= 2.7.6-6),
 perl (= 5.28.1-6),
 perl-base (= 5.28.1-6),
 perl-modules-5.28 (= 5.28.1-6),
 pkg-config (= 0.29-6),
 po-debconf (= 1.0.21),
 sed (= 4.7-1),
 sensible-utils (= 0.0.12),
 sysvinit-utils (= 2.96~beta-1),
 tar (= 1.30+dfsg-6+b1),
 ucf (= 3.0038+nmu1),
 uil (= 2.3.8-2),
 util-linux (= 2.34-0.1),
 uuid-dev (= 2.34-0.1),
 x11-common (= 1:7.7+19),
 x11proto-core-dev (= 2018.4-4),
 x11proto-damage-dev (= 1:2018.4-4),
 x11proto-dev (= 2018.4-4),
 x11proto-fixes-dev (= 1:2018.4-4),
 x11proto-xext-dev (= 2018.4-4),
 x11proto-xf86vidmode-dev (= 2018.4-4),
 xorg-sgml-doctools (= 1:1.11-1),
 xtrans-dev (= 1.3.5-1),
 xz-utils (= 5.2.4-1+b1),
 zlib1g (= 1:1.2.11.dfsg-1+b1),
 zlib1g-dev (= 1:1.2.11.dfsg-1+b1)
Environment:
 DEB_BUILD_OPTIONS="nocheck parallel=1"
 DEB_BUILD_PROFILES="cross nocheck"
 LANG="en_US.UTF-8"
 LC_ALL="C.UTF-8"
 SOURCE_DATE_EPOCH="1568508819"


+------------------------------------------------------------------------------+
| Package contents                                                             |
+------------------------------------------------------------------------------+


libncbi6-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 11657460 bytes: control archive=1316 bytes.
    1037 bytes,    13 lines      control              
    1696 bytes,    16 lines      md5sums              
 Package: libncbi6-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 12184
 Depends: libncbi6 (= 6.1.20170106+dfsg1-7)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libncbi6
 Build-Ids: 1a51d217ad2b16cc4c2335a43178c20388a2000a 23b61f580c8a491d337ff8a1885b38cee42d8bcb 2726b3552e7c5edf3a4de6b0714d4060cf8aa44c 2c8dff5448002a5f06fda135e18bc66570809f3f 467157c3cd87e5735b750225ade3f33c86fa2b78 4b1268baa5e0c5f9196b8c0304bbd85efa63c0db 5add5d9145ef30d4b1652dd72f3c417aa8f96516 76ed6c5d7eafabdc922cfbdc293c7b1405877255 7a60c9193139fbfab85c6711f15a03bedc79c31f 806b03169ef4acd8bddcdf7aa14db51158fd42d3 82ea16485b22398fda079bd62f9554488e384a24 bd059230bbb8991c4b6f7103497606a746e7b46d c732a06642dd7296ea73cd924c37ecb9e555faf6 d0070d472a47b935eb989122526ddc6273647a4f d87bbd8244f64245f84f7e4cfdfcf7ba8b2de990 da976df922ce7e8edd85ecd0bcccd1a345ca8c96

drwxr-xr-x root/root         0 2019-09-15 00:53 ./
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/1a/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/2c/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/76/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/c7/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/d0/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/da/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libncbi6-dbgsym -> libncbi6


libncbi6-dev_6.1.20170106+dfsg1-7_s390x.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 5043424 bytes: control archive=12740 bytes.
     597 bytes,    16 lines      control              
   34592 bytes,   513 lines      md5sums              
 Package: libncbi6-dev
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 25949
 Depends: libncbi6 (= 6.1.20170106+dfsg1-7)
 Recommends: ncbi-tools-bin
 Provides: ncbi-tools-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (development files)
  This package supplies development versions of NCBI's non-graphical C
  libraries, along with the corresponding header files.

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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/include/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/include/ncbi/algo/blast/
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiid1.so -> libncbiid1.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiobj.so -> libncbiobj.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbitxc2.so -> libncbitxc2.so.6.1.20170106
-rw-r--r-- root/root    158382 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetblast.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetblast.so -> libnetblast.so.6.1.20170106
-rw-r--r-- root/root     31572 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetcli.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetcli.so -> libnetcli.so.6.1.20170106
-rw-r--r-- root/root    238132 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetentr.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetentr.so -> libncbiNacc.so
-rw-r--r-- root/root     95464 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/ncbithr.o
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-rw-r--r-- root/root       178 2019-09-15 00:53 ./usr/share/doc/libncbi6-dev/README.Debian
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libncbi6-dev/README.gz -> changelog.gz
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-rw-r--r-- root/root    367300 2019-07-29 01:01 ./usr/share/doc/libncbi6-dev/sdk.doc.gz


libncbi6_6.1.20170106+dfsg1-7_s390x.deb
---------------------------------------

 new Debian package, version 2.0.
 size 3710208 bytes: control archive=65176 bytes.
     662 bytes,    15 lines      control              
    2569 bytes,    33 lines      md5sums              
     740 bytes,    16 lines      shlibs               
  442869 bytes, 11649 lines      symbols              
      67 bytes,     2 lines      triggers             
 Package: libncbi6
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 14174
 Depends: ncbi-data (= 6.1.20170106+dfsg1-7), libc6 (>= 2.29), libgnutls30 (>= 3.6.6)
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications
  The NCBI Software Development Toolkit was developed for the production and
  distribution of GenBank, Entrez, BLAST, and related services by NCBI.  It
  allows you to read and write NCBI ASN.1 files, builds Blast or Entrez, etc.

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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libblast.so.6 -> libblast.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libblastapi.so.6 -> libblastapi.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbi.so.6 -> libncbi.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiCacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiNacc.so.6 -> libncbiNacc.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiacc.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicdr.so.6 -> libncbicdr.so.6.1.20170106
-rw-r--r-- root/root    139616 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicdr.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiid1.so.6 -> libncbiid1.so.6.1.20170106
-rw-r--r-- root/root     44264 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiid1.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbimla.so.6 -> libncbimla.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbimmdb.so.6 -> libncbimmdb.so.6.1.20170106
-rw-r--r-- root/root    803680 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbimmdb.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbiobj.so.6 -> libncbiobj.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbitool.so.6 -> libncbitool.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbitxc2.so.6 -> libncbitxc2.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetblast.so.6 -> libnetblast.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetcli.so.6 -> libnetcli.so.6.1.20170106
-rw-r--r-- root/root     23208 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetcli.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libnetentr.so.6 -> libncbiNacc.so.6
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibgif.so.6 -> libvibgif.so.6.1.20170106
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc-base/
-rw-r--r-- root/root       580 2019-09-15 00:53 ./usr/share/doc-base/ncbi-tools-dispatcher
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/libncbi6/
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libncbi6/README.gz -> changelog.gz
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-rw-r--r-- root/root       392 2019-09-15 00:53 ./usr/share/doc/libncbi6/README.net-cfg
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-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libncbi6/changelog.gz
-rw-r--r-- root/root     10340 2019-09-15 00:53 ./usr/share/doc/libncbi6/copyright
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-rw-r--r-- root/root        50 2019-09-15 00:53 ./usr/share/doc/libncbi6/spacer10.gif


libvibrant6-dev_6.1.20170106+dfsg1-7_s390x.deb
----------------------------------------------

 new Debian package, version 2.0.
 size 1450512 bytes: control archive=3912 bytes.
     632 bytes,    14 lines      control              
    7680 bytes,   123 lines      md5sums              
     337 bytes,    13 lines   *  postinst             #!/bin/sh
 Package: libvibrant6-dev
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 8577
 Depends: libglu1-mesa-dev | libglu-dev, libmotif-dev, libncbi6-dev (= 6.1.20170106+dfsg1-7), libvibrant6b (= 6.1.20170106+dfsg1-7), libxmu-dev
 Section: libdevel
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for graphic biology applications (development files)
  Vibrant allows you to develop portable (Motif, MS-Windows, Mac-OS) graphic
  biological applications.

drwxr-xr-x root/root         0 2019-09-15 00:53 ./
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libddvlib.so -> libddvlib.so.6.1.20170106
-rw-r--r-- root/root    328994 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3d.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3d.so -> libncbicn3dOGL.so
-rw-r--r-- root/root    337994 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3dOGL.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3dOGL.so -> libncbicn3dOGL.so.6.1.20170106
-rw-r--r-- root/root   4315126 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbidesk.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbidesk.so -> libncbidesk.so.6.1.20170106
-rw-r--r-- root/root    194320 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibgif.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibgif.so -> libvibgif.so.6.1.20170106
-rw-r--r-- root/root    190742 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibnet.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibnet.so -> libvibnet.so.6.1.20170106
-rw-r--r-- root/root   1118618 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrant.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrant.so -> libvibrantOGL.so
-rw-r--r-- root/root   1185970 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrantOGL.a
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrantOGL.so -> libvibrantOGL.so.6.1.20170106
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/libvibrant6-dev/
-rw-r--r-- root/root       507 2019-09-15 00:53 ./usr/share/doc/libvibrant6-dev/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libvibrant6-dev/README.gz -> changelog.gz
-rw-r--r-- root/root     18062 2019-09-15 00:53 ./usr/share/doc/libvibrant6-dev/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libvibrant6-dev/changelog.gz
-rw-r--r-- root/root     10340 2019-09-15 00:53 ./usr/share/doc/libvibrant6-dev/copyright


libvibrant6b-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
--------------------------------------------------

 new Debian package, version 2.0.
 size 4403752 bytes: control archive=792 bytes.
     597 bytes,    13 lines      control              
     530 bytes,     5 lines      md5sums              
 Package: libvibrant6b-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 4683
 Depends: libvibrant6b (= 6.1.20170106+dfsg1-7)
 Section: debug
 Priority: optional
 Multi-Arch: same
 Description: debug symbols for libvibrant6b
 Build-Ids: 1261afc0f7139f3f6ffaa1feeef5817fc8a452ae 1ca73e4602a597bdd5d89c01940fcfc4ac383067 6e8792d252587e070b032ba8519001ee5fe0875f c4f795d364d25d6c82554f4734b9db683d147657 e5f090fcb289a48e0d26cd3f9f08f1933b418dc7

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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/12/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/debug/.build-id/1c/
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drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/doc/
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libvibrant6b-dbgsym -> libvibrant6b


libvibrant6b_6.1.20170106+dfsg1-7_s390x.deb
-------------------------------------------

 new Debian package, version 2.0.
 size 1161124 bytes: control archive=15988 bytes.
     847 bytes,    18 lines      control              
     808 bytes,    10 lines      md5sums              
     256 bytes,     5 lines      shlibs               
   91711 bytes,  2469 lines      symbols              
      67 bytes,     2 lines      triggers             
 Package: libvibrant6b
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3691
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29), libgl1, libglu1-mesa | libglu1, libpng16-16 (>= 1.6.2-1), libx11-6, libxm4 (>= 2.3.4), libxmu6, libxt6
 Recommends: sensible-utils
 Conflicts: libvibrant6, libvibrant6a
 Replaces: libvibrant6, libvibrant6a
 Section: libs
 Priority: optional
 Multi-Arch: same
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for graphic biology applications
  This is the library for those who just want to run Vibrant applications.
  It also includes a wrapper (vibrate) that allows many NCBI applications to
  provide a GUI for selecting options.

drwxr-xr-x root/root         0 2019-09-15 00:53 ./
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libddvlib.so.6 -> libddvlib.so.6.1.20170106
-rw-r--r-- root/root    120888 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libddvlib.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3d.so.6 -> libncbicn3dOGL.so.6
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3dOGL.so.6 -> libncbicn3dOGL.so.6.1.20170106
-rw-r--r-- root/root    192168 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbicn3dOGL.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libncbidesk.so.6 -> libncbidesk.so.6.1.20170106
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibnet.so.6 -> libvibnet.so.6.1.20170106
-rw-r--r-- root/root    126456 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibnet.so.6.1.20170106
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrant.so.6 -> libvibrantOGL.so.6
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrantOGL.so.6 -> libvibrantOGL.so.6.1.20170106
-rw-r--r-- root/root    753072 2019-09-15 00:53 ./usr/lib/s390x-linux-gnu/libvibrantOGL.so.6.1.20170106
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-rw-r--r-- root/root       507 2019-09-15 00:53 ./usr/share/doc/libvibrant6b/NEWS.Debian.gz
lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/libvibrant6b/README.gz -> changelog.gz
-rw-r--r-- root/root     18062 2019-09-15 00:53 ./usr/share/doc/libvibrant6b/changelog.Debian.gz
-rw-r--r-- root/root     18160 2019-07-29 01:01 ./usr/share/doc/libvibrant6b/changelog.gz
-rw-r--r-- root/root     10340 2019-09-15 00:53 ./usr/share/doc/libvibrant6b/copyright
drwxr-xr-x root/root         0 2019-09-15 00:53 ./usr/share/lintian/
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-rw-r--r-- root/root        48 2019-09-15 00:53 ./usr/share/lintian/overrides/libvibrant6b


ncbi-cn3d-dbgsym_3.0.20170106+dfsg1-7_s390x.deb
-----------------------------------------------

 new Debian package, version 2.0.
 size 22488 bytes: control archive=560 bytes.
     428 bytes,    12 lines      control              
     106 bytes,     1 lines      md5sums              
 Package: ncbi-cn3d-dbgsym
 Source: ncbi-tools6 (6.1.20170106+dfsg1-7)
 Version: 3.0.20170106+dfsg1-7
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 37
 Depends: ncbi-cn3d (= 3.0.20170106+dfsg1-7)
 Section: debug
 Priority: optional
 Description: debug symbols for ncbi-cn3d
 Build-Ids: 9f5d7545445eab46109f75d34f32d028bcfe8d03

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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/ncbi-cn3d-dbgsym -> ncbi-cn3d


ncbi-cn3d_3.0.20170106+dfsg1-7_s390x.deb
----------------------------------------

 new Debian package, version 2.0.
 size 46928 bytes: control archive=1096 bytes.
     836 bytes,    17 lines      control              
     548 bytes,     8 lines      md5sums              
     194 bytes,     8 lines   *  postinst             #!/bin/sh
      68 bytes,     5 lines   *  prerm                #!/bin/sh
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 Source: ncbi-tools6 (6.1.20170106+dfsg1-7)
 Version: 3.0.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 81
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), libc6 (>= 2.4)
 Suggests: ncbi-tools-bin, ncbi-tools-x11
 Breaks: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~)
 Replaces: ncbi-tools-x11 (<< 6.1.20170106+dfsg1-5~)
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: 3-dimensional viewer for biological molecules
  Cn3D is a helper application for your web browser that allows you to
  view 3-dimensional structures from NCBI's Entrez retrieval service.

drwxr-xr-x root/root         0 2019-09-15 00:53 ./
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/ncbi-cn3d/README.gz -> changelog.gz
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-rw-r--r-- root/root       522 2019-09-15 00:53 ./usr/share/man/man1/Cn3D-3.0.1.gz


ncbi-tools-bin-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
----------------------------------------------------

 new Debian package, version 2.0.
 size 1393196 bytes: control archive=2192 bytes.
    1857 bytes,    12 lines      control              
    3816 bytes,    36 lines      md5sums              
 Package: ncbi-tools-bin-dbgsym
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 Version: 6.1.20170106+dfsg1-7
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
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lrwxrwxrwx root/root         0 2019-09-15 00:53 ./usr/share/doc/ncbi-tools-bin-dbgsym -> ncbi-tools-bin


ncbi-tools-bin_6.1.20170106+dfsg1-7_s390x.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 1904784 bytes: control archive=3428 bytes.
    1021 bytes,    21 lines      control              
    6642 bytes,   101 lines      md5sums              
 Package: ncbi-tools-bin
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3672
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libc6 (>= 2.29)
 Suggests: libvibrant6b, ncbi-blast+, ncbi-cn3d, ncbi-tools-x11
 Breaks: blast2 (<< 1:2.2.26.20160908)
 Replaces: blast2 (<< 1:2.2.26.20160908)
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (text-based utilities)
  This package includes various utilities distributed with the NCBI C SDK,
  including the development tools asntool and errhdr (formerly of
  libncbi6-dev).  None of the programs in this package require X; you can
  find the X-based utilities in the ncbi-tools-x11 package.  BLAST and
  related tools now come from a separate source base, corresponding to the
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ncbi-tools-x11-dbgsym_6.1.20170106+dfsg1-7_s390x.deb
----------------------------------------------------

 new Debian package, version 2.0.
 size 2919328 bytes: control archive=772 bytes.
     586 bytes,    12 lines      control              
     530 bytes,     5 lines      md5sums              
 Package: ncbi-tools-x11-dbgsym
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Auto-Built-Package: debug-symbols
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 3139
 Depends: ncbi-tools-x11 (= 6.1.20170106+dfsg1-7)
 Section: debug
 Priority: optional
 Description: debug symbols for ncbi-tools-x11
 Build-Ids: 43c5131cb445391480dc20fb4adf5ec95a6b4706 9a1f06b54ccb041fe314242e2d93178dfad23645 a14884e22339809790756640b7299c9d0d659fc4 ae252ada1d074c3386d19286afc0eeb227fa0ae0 f0199a9d5e11f45c640a5831d3a986b1462d9d13

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ncbi-tools-x11_6.1.20170106+dfsg1-7_s390x.deb
---------------------------------------------

 new Debian package, version 2.0.
 size 1046612 bytes: control archive=2244 bytes.
     815 bytes,    17 lines      control              
    4177 bytes,    56 lines      md5sums              
 Package: ncbi-tools-x11
 Source: ncbi-tools6
 Version: 6.1.20170106+dfsg1-7
 Architecture: s390x
 Maintainer: Debian Med Packaging Team <debian-med-packaging@lists.alioth.debian.org>
 Installed-Size: 2897
 Depends: libncbi6 (<< 6.1.20170106+dfsg1.1), libncbi6 (>= 6.1.20170106+dfsg1), libvibrant6b (<< 6.1.20170106+dfsg1.1), libvibrant6b (>= 6.1.20170106+dfsg1), ncbi-cn3d, libc6 (>= 2.7)
 Suggests: ncbi-tools-bin
 Section: science
 Priority: optional
 Multi-Arch: foreign
 Homepage: http://www.ncbi.nlm.nih.gov/IEB/ToolBox/
 Description: NCBI libraries for biology applications (X-based utilities)
  This package includes some X-based utilities distributed with the
  NCBI C SDK: Network Entrez, Sequin, ddv, and udv.  These programs
  are not part of ncbi-tools-bin because they depend on several
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  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl
  liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common t1utils
Suggested packages:
  libdata-dump-perl ca-certificates libscalar-number-perl
  libbareword-filehandles-perl libindirect-perl libmultidimensional-perl
  libdevel-lexalias-perl libdevel-stacktrace-perl libwww-perl
  binutils-multiarch libtext-template-perl readline-doc
Recommended packages:
  gnupg libcgi-fast-perl libhttp-message-perl libasync-mergepoint-perl
  libsereal-perl libtest-fatal-perl libtest-refcount-perl
  libclass-xsaccessor-perl libdigest-bubblebabble-perl libnet-dns-sec-perl
  libnet-libidn-perl libauthen-sasl-perl libunicode-utf8-perl libref-util-perl
  libtype-tiny-xs-perl libperlio-gzip-perl
The following NEW packages will be installed:
  diffstat gpg gpgconf libapt-pkg-perl libassuan0 libb-hooks-op-check-perl
  libcapture-tiny-perl libcgi-pm-perl libclass-accessor-perl
  libclass-method-modifiers-perl libclone-perl libdevel-callchecker-perl
  libdevel-globaldestruction-perl libdigest-hmac-perl
  libdynaloader-functions-perl libemail-valid-perl libexporter-tiny-perl
  libfile-basedir-perl libfile-find-rule-perl libfuture-perl
  libhtml-parser-perl libhtml-tagset-perl libimport-into-perl
  libio-async-loop-epoll-perl libio-async-perl libio-pty-perl
  libio-socket-ssl-perl libipc-run-perl libipc-system-simple-perl
  liblinux-epoll-perl liblist-compare-perl liblist-moreutils-perl
  libmailtools-perl libmodule-runtime-perl libmoo-perl libnet-dns-perl
  libnet-domain-tld-perl libnet-ip-perl libnet-smtp-ssl-perl
  libnet-ssleay-perl libnumber-compare-perl libparams-classify-perl
  libpath-tiny-perl libreadline8 librole-tiny-perl libsqlite3-0 libssl1.1
  libstrictures-perl libstruct-dumb-perl libsub-exporter-progressive-perl
  libsub-name-perl libsub-quote-perl libtext-glob-perl
  libtext-levenshtein-perl libtimedate-perl libtry-tiny-perl libtype-tiny-perl
  liburi-perl libyaml-0-2 libyaml-libyaml-perl lintian netbase patchutils
  perl-openssl-defaults readline-common
  sbuild-build-depends-lintian-dummy:s390x t1utils
0 upgraded, 67 newly installed, 0 to remove and 0 not upgraded.
Need to get 8521 kB of archives.
After this operation, 23.8 MB of additional disk space will be used.
Get:1 copy:/<<RESOLVERDIR>>/apt_archive ./ sbuild-build-depends-lintian-dummy 0.invalid.0 [848 B]
Get:2 http://debian.oregonstate.edu/debian unstable/main amd64 readline-common all 8.0-3 [72.5 kB]
Get:3 http://debian.oregonstate.edu/debian unstable/main amd64 libreadline8 amd64 8.0-3 [160 kB]
Get:4 http://debian.oregonstate.edu/debian unstable/main amd64 netbase all 5.6 [19.4 kB]
Get:5 http://debian.oregonstate.edu/debian unstable/main amd64 diffstat amd64 1.62-1+b1 [33.6 kB]
Get:6 http://debian.oregonstate.edu/debian unstable/main amd64 libassuan0 amd64 2.5.3-7 [50.4 kB]
Get:7 http://debian.oregonstate.edu/debian unstable/main amd64 gpgconf amd64 2.2.17-3 [524 kB]
Get:8 http://debian.oregonstate.edu/debian unstable/main amd64 libsqlite3-0 amd64 3.29.0-2 [646 kB]
Get:9 http://debian.oregonstate.edu/debian unstable/main amd64 gpg amd64 2.2.17-3 [881 kB]
Get:10 http://debian.oregonstate.edu/debian unstable/main amd64 libapt-pkg-perl amd64 0.1.36+b1 [71.2 kB]
Get:11 http://debian.oregonstate.edu/debian unstable/main amd64 libb-hooks-op-check-perl amd64 0.22-1+b1 [11.4 kB]
Get:12 http://debian.oregonstate.edu/debian unstable/main amd64 libcapture-tiny-perl all 0.48-1 [26.0 kB]
Get:13 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-tagset-perl all 3.20-3 [12.7 kB]
Get:14 http://debian.oregonstate.edu/debian unstable/main amd64 liburi-perl all 1.76-1 [89.9 kB]
Get:15 http://debian.oregonstate.edu/debian unstable/main amd64 libhtml-parser-perl amd64 3.72-3+b3 [105 kB]
Get:16 http://debian.oregonstate.edu/debian unstable/main amd64 libcgi-pm-perl all 4.44-1 [223 kB]
Get:17 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-name-perl amd64 0.21-1+b3 [13.6 kB]
Get:18 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-accessor-perl all 0.51-1 [23.2 kB]
Get:19 http://debian.oregonstate.edu/debian unstable/main amd64 libclass-method-modifiers-perl all 2.13-1 [19.2 kB]
Get:20 http://debian.oregonstate.edu/debian unstable/main amd64 libclone-perl amd64 0.41-1+b1 [14.6 kB]
Get:21 http://debian.oregonstate.edu/debian unstable/main amd64 libdynaloader-functions-perl all 0.003-1 [12.6 kB]
Get:22 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-callchecker-perl amd64 0.008-1 [15.7 kB]
Get:23 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-exporter-progressive-perl all 0.001013-1 [7588 B]
Get:24 http://debian.oregonstate.edu/debian unstable/main amd64 libdevel-globaldestruction-perl all 0.14-1 [8084 B]
Get:25 http://debian.oregonstate.edu/debian unstable/main amd64 libdigest-hmac-perl all 1.03+dfsg-2 [10.6 kB]
Get:26 http://debian.oregonstate.edu/debian unstable/main amd64 libssl1.1 amd64 1.1.1d-1 [1533 kB]
Get:27 http://debian.oregonstate.edu/debian unstable/main amd64 perl-openssl-defaults amd64 3 [6782 B]
Get:28 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ssleay-perl amd64 1.88-1 [320 kB]
Get:29 http://debian.oregonstate.edu/debian unstable/main amd64 libio-socket-ssl-perl all 2.066-1 [210 kB]
Get:30 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-smtp-ssl-perl all 1.04-1 [6184 B]
Get:31 http://debian.oregonstate.edu/debian unstable/main amd64 libtimedate-perl all 2.3000-2 [42.2 kB]
Get:32 http://debian.oregonstate.edu/debian unstable/main amd64 libmailtools-perl all 2.21-1 [95.5 kB]
Get:33 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-ip-perl all 1.26-2 [29.0 kB]
Get:34 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-dns-perl all 1.20-1 [367 kB]
Get:35 http://debian.oregonstate.edu/debian unstable/main amd64 libnet-domain-tld-perl all 1.75-1 [33.3 kB]
Get:36 http://debian.oregonstate.edu/debian unstable/main amd64 libemail-valid-perl all 1.202-1 [23.0 kB]
Get:37 http://debian.oregonstate.edu/debian unstable/main amd64 libexporter-tiny-perl all 1.002001-1 [36.9 kB]
Get:38 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-system-simple-perl all 1.25-4 [26.5 kB]
Get:39 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-basedir-perl all 0.08-1 [17.7 kB]
Get:40 http://debian.oregonstate.edu/debian unstable/main amd64 libnumber-compare-perl all 0.03-1 [7642 B]
Get:41 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-glob-perl all 0.10-1 [8362 B]
Get:42 http://debian.oregonstate.edu/debian unstable/main amd64 libfile-find-rule-perl all 0.34-1 [30.6 kB]
Get:43 http://debian.oregonstate.edu/debian unstable/main amd64 libfuture-perl all 0.41-1 [79.0 kB]
Get:44 http://debian.oregonstate.edu/debian unstable/main amd64 libparams-classify-perl amd64 0.015-1+b1 [25.5 kB]
Get:45 http://debian.oregonstate.edu/debian unstable/main amd64 libmodule-runtime-perl all 0.016-1 [19.4 kB]
Get:46 http://debian.oregonstate.edu/debian unstable/main amd64 libimport-into-perl all 1.002005-1 [11.6 kB]
Get:47 http://debian.oregonstate.edu/debian unstable/main amd64 libstruct-dumb-perl all 0.09-1 [11.1 kB]
Get:48 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-perl all 0.74-1 [268 kB]
Get:49 http://debian.oregonstate.edu/debian unstable/main amd64 liblinux-epoll-perl amd64 0.016-1+b1 [17.0 kB]
Get:50 http://debian.oregonstate.edu/debian unstable/main amd64 libio-async-loop-epoll-perl all 0.20-1 [11.9 kB]
Get:51 http://debian.oregonstate.edu/debian unstable/main amd64 libio-pty-perl amd64 1:1.08-1.1+b5 [33.7 kB]
Get:52 http://debian.oregonstate.edu/debian unstable/main amd64 libipc-run-perl all 20180523.0-1 [101 kB]
Get:53 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-compare-perl all 0.53-1 [68.9 kB]
Get:54 http://debian.oregonstate.edu/debian unstable/main amd64 liblist-moreutils-perl amd64 0.416-1+b4 [64.2 kB]
Get:55 http://debian.oregonstate.edu/debian unstable/main amd64 librole-tiny-perl all 2.000006-1 [19.4 kB]
Get:56 http://debian.oregonstate.edu/debian unstable/main amd64 libstrictures-perl all 2.000006-1 [18.6 kB]
Get:57 http://debian.oregonstate.edu/debian unstable/main amd64 libsub-quote-perl all 2.006003-1 [19.7 kB]
Get:58 http://debian.oregonstate.edu/debian unstable/main amd64 libmoo-perl all 2.003004-2 [57.4 kB]
Get:59 http://debian.oregonstate.edu/debian unstable/main amd64 libpath-tiny-perl all 0.108-1 [53.3 kB]
Get:60 http://debian.oregonstate.edu/debian unstable/main amd64 libtext-levenshtein-perl all 0.13-1 [11.1 kB]
Get:61 http://debian.oregonstate.edu/debian unstable/main amd64 libtry-tiny-perl all 0.30-1 [23.3 kB]
Get:62 http://debian.oregonstate.edu/debian unstable/main amd64 libtype-tiny-perl all 1.004004-1 [266 kB]
Get:63 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-0-2 amd64 0.2.2-1 [49.6 kB]
Get:64 http://debian.oregonstate.edu/debian unstable/main amd64 libyaml-libyaml-perl amd64 0.80+repack-1 [34.5 kB]
Get:65 http://debian.oregonstate.edu/debian unstable/main amd64 patchutils amd64 0.3.4-2+b1 [91.4 kB]
Get:66 http://debian.oregonstate.edu/debian unstable/main amd64 t1utils amd64 1.41-3 [62.3 kB]
Get:67 http://debian.oregonstate.edu/debian unstable/main amd64 lintian all 2.21.0 [1258 kB]
debconf: delaying package configuration, since apt-utils is not installed
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Setting up libapt-pkg-perl (0.1.36+b1) ...
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Setting up libclass-method-modifiers-perl (2.13-1) ...
Setting up liblist-compare-perl (0.53-1) ...
Setting up libio-pty-perl (1:1.08-1.1+b5) ...
Setting up libclone-perl (0.41-1+b1) ...
Setting up libyaml-0-2:amd64 (0.2.2-1) ...
Setting up libssl1.1:amd64 (1.1.1d-1) ...
Setting up libhtml-tagset-perl (3.20-3) ...
Setting up libsqlite3-0:amd64 (3.29.0-2) ...
Setting up libfuture-perl (0.41-1) ...
Setting up libyaml-libyaml-perl (0.80+repack-1) ...
Setting up libtry-tiny-perl (0.30-1) ...
Setting up perl-openssl-defaults:amd64 (3) ...
Setting up libtext-levenshtein-perl (0.13-1) ...
Setting up libassuan0:amd64 (2.5.3-7) ...
Setting up libnumber-compare-perl (0.03-1) ...
Setting up libio-async-perl (0.74-1) ...
Setting up patchutils (0.3.4-2+b1) ...
Setting up libfile-find-rule-perl (0.34-1) ...
Setting up libdigest-hmac-perl (1.03+dfsg-2) ...
Setting up libipc-system-simple-perl (1.25-4) ...
Setting up libnet-domain-tld-perl (1.75-1) ...
Setting up t1utils (1.41-3) ...
Setting up liblinux-epoll-perl (0.016-1+b1) ...
Setting up diffstat (1.62-1+b1) ...
Setting up libb-hooks-op-check-perl (0.22-1+b1) ...
Setting up libipc-run-perl (20180523.0-1) ...
Setting up libsub-exporter-progressive-perl (0.001013-1) ...
Setting up libcapture-tiny-perl (0.48-1) ...
Setting up libtimedate-perl (2.3000-2) ...
Setting up libsub-name-perl (0.21-1+b3) ...
Setting up libpath-tiny-perl (0.108-1) ...
Setting up librole-tiny-perl (2.000006-1) ...
Setting up libdevel-globaldestruction-perl (0.14-1) ...
Setting up netbase (5.6) ...
Setting up libstrictures-perl (2.000006-1) ...
Setting up libsub-quote-perl (2.006003-1) ...
Setting up libexporter-tiny-perl (1.002001-1) ...
Setting up libclass-accessor-perl (0.51-1) ...
Setting up libnet-ip-perl (1.26-2) ...
Setting up readline-common (8.0-3) ...
Setting up liburi-perl (1.76-1) ...
Setting up libnet-ssleay-perl (1.88-1) ...
Setting up libfile-basedir-perl (0.08-1) ...
Setting up liblist-moreutils-perl (0.416-1+b4) ...
Setting up libreadline8:amd64 (8.0-3) ...
Setting up libtype-tiny-perl (1.004004-1) ...
Setting up libnet-dns-perl (1.20-1) ...
Setting up libdevel-callchecker-perl (0.008-1) ...
Setting up libio-async-loop-epoll-perl (0.20-1) ...
Setting up libhtml-parser-perl (3.72-3+b3) ...
Setting up gpgconf (2.2.17-3) ...
Setting up libio-socket-ssl-perl (2.066-1) ...
Setting up gpg (2.2.17-3) ...
Setting up libparams-classify-perl (0.015-1+b1) ...
Setting up libcgi-pm-perl (4.44-1) ...
Setting up libnet-smtp-ssl-perl (1.04-1) ...
Setting up libmodule-runtime-perl (0.016-1) ...
Setting up libmailtools-perl (2.21-1) ...
Setting up libemail-valid-perl (1.202-1) ...
Setting up libimport-into-perl (1.002005-1) ...
Setting up libmoo-perl (2.003004-2) ...
Setting up lintian (2.21.0) ...
Setting up sbuild-build-depends-lintian-dummy:s390x (0.invalid.0) ...
Processing triggers for man-db (2.8.7-3) ...
Not building database; man-db/auto-update is not 'true'.
Processing triggers for libc-bin (2.29-1) ...

I: Lintian run was successful.

+------------------------------------------------------------------------------+
| Post Build                                                                   |
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+------------------------------------------------------------------------------+
| Cleanup                                                                      |
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Purging /<<BUILDDIR>>
Not cleaning session: cloned chroot in use

+------------------------------------------------------------------------------+
| Summary                                                                      |
+------------------------------------------------------------------------------+

Build Architecture: amd64
Build Profiles: cross nocheck
Build Type: any
Build-Space: 1194476
Build-Time: 1320
Distribution: unstable
Foreign Architectures: s390x
Host Architecture: s390x
Install-Time: 30
Job: ncbi-tools6_6.1.20170106+dfsg1-7
Lintian: pass
Machine Architecture: amd64
Package: ncbi-tools6
Package-Time: 1369
Source-Version: 6.1.20170106+dfsg1-7
Space: 1194476
Status: successful
Version: 6.1.20170106+dfsg1-7
--------------------------------------------------------------------------------
Finished at 2019-09-15T13:59:58Z
Build needed 00:22:49, 1194476k disk space